Multiple sequence alignment - TraesCS5A01G469000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G469000 chr5A 100.000 3892 0 0 1 3892 646202315 646198424 0.000000e+00 7188.0
1 TraesCS5A01G469000 chr5A 91.484 411 19 6 1111 1513 646201001 646200599 5.680000e-153 551.0
2 TraesCS5A01G469000 chr5A 91.484 411 19 6 1315 1717 646201205 646200803 5.680000e-153 551.0
3 TraesCS5A01G469000 chr5A 95.652 207 9 0 1111 1317 646200805 646200599 2.240000e-87 333.0
4 TraesCS5A01G469000 chr5A 95.652 207 9 0 1511 1717 646201205 646200999 2.240000e-87 333.0
5 TraesCS5A01G469000 chr5A 91.795 195 15 1 500 693 646201719 646201525 1.780000e-68 270.0
6 TraesCS5A01G469000 chr5A 91.795 195 15 1 597 791 646201816 646201623 1.780000e-68 270.0
7 TraesCS5A01G469000 chr5A 90.526 95 8 1 500 593 646201621 646201527 1.470000e-24 124.0
8 TraesCS5A01G469000 chr5A 90.526 95 8 1 695 789 646201816 646201723 1.470000e-24 124.0
9 TraesCS5A01G469000 chr5B 92.227 1994 103 28 1316 3267 654485128 654483145 0.000000e+00 2776.0
10 TraesCS5A01G469000 chr5B 90.240 707 53 12 597 1297 654485997 654485301 0.000000e+00 909.0
11 TraesCS5A01G469000 chr5B 89.371 715 52 11 1 693 654486516 654485804 0.000000e+00 878.0
12 TraesCS5A01G469000 chr5B 93.250 563 26 6 961 1513 654485278 654484718 0.000000e+00 819.0
13 TraesCS5A01G469000 chr5B 96.117 206 8 0 1512 1717 654485128 654484923 1.730000e-88 337.0
14 TraesCS5A01G469000 chr5B 95.263 190 7 1 1510 1697 654485490 654485301 2.270000e-77 300.0
15 TraesCS5A01G469000 chr5B 89.474 190 10 4 1314 1493 654485490 654485301 8.410000e-57 231.0
16 TraesCS5A01G469000 chr5B 91.753 97 8 0 695 791 654485997 654485901 6.780000e-28 135.0
17 TraesCS5A01G469000 chr5B 89.474 95 8 2 500 593 654485899 654485806 6.830000e-23 119.0
18 TraesCS5A01G469000 chr5D 89.991 2208 116 46 1315 3455 519641001 519638832 0.000000e+00 2756.0
19 TraesCS5A01G469000 chr5D 89.236 929 64 20 597 1513 519641494 519640590 0.000000e+00 1129.0
20 TraesCS5A01G469000 chr5D 89.328 759 60 7 1 744 519642006 519641254 0.000000e+00 933.0
21 TraesCS5A01G469000 chr5D 95.652 207 8 1 1511 1717 519641001 519640796 8.060000e-87 331.0
22 TraesCS5A01G469000 chr5D 88.627 255 9 7 3561 3800 519638726 519638477 3.800000e-75 292.0
23 TraesCS5A01G469000 chr5D 92.617 149 9 2 500 646 519641402 519641254 3.050000e-51 213.0
24 TraesCS5A01G469000 chr5D 87.611 113 10 2 3454 3564 519638799 519638689 1.140000e-25 128.0
25 TraesCS5A01G469000 chr5D 83.505 97 10 1 695 791 519641494 519641404 6.930000e-13 86.1
26 TraesCS5A01G469000 chr5D 92.157 51 2 2 500 548 519641304 519641254 1.940000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G469000 chr5A 646198424 646202315 3891 True 1082.666667 7188 93.212667 1 3892 9 chr5A.!!$R1 3891
1 TraesCS5A01G469000 chr5B 654483145 654486516 3371 True 722.666667 2776 91.907667 1 3267 9 chr5B.!!$R1 3266
2 TraesCS5A01G469000 chr5D 519638477 519642006 3529 True 659.933333 2756 89.858222 1 3800 9 chr5D.!!$R1 3799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 643 0.033366 GTGCTCCCGTTTTGCCATTT 59.967 50.0 0.0 0.0 0.0 2.32 F
2342 2598 0.394899 CCCCAAAGCTGACATCCCTC 60.395 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2579 2835 1.106944 CAGGGTTGTTGTCCGCCTTT 61.107 55.0 0.0 0.0 0.00 3.11 R
3284 3554 0.321475 TGCGATCAACCAGCATCACA 60.321 50.0 0.0 0.0 35.81 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 5.140747 ACTGGTACTGATTGAGAGTGTTC 57.859 43.478 0.00 0.00 0.00 3.18
152 155 9.528018 GAATTTCACAAAATAGGAACAAAGACA 57.472 29.630 0.00 0.00 33.93 3.41
163 166 4.984161 AGGAACAAAGACAATGAATTTGCG 59.016 37.500 12.33 0.00 39.03 4.85
168 171 4.582701 AAGACAATGAATTTGCGGTTGA 57.417 36.364 0.00 0.00 39.03 3.18
219 222 3.118112 GCTCTTCCTCTGGATTTCATGGA 60.118 47.826 0.00 0.00 0.00 3.41
228 231 3.095332 TGGATTTCATGGATTTTCGGCA 58.905 40.909 0.00 0.00 0.00 5.69
229 232 3.705579 TGGATTTCATGGATTTTCGGCAT 59.294 39.130 0.00 0.00 0.00 4.40
231 234 4.746611 GGATTTCATGGATTTTCGGCATTC 59.253 41.667 0.00 0.00 0.00 2.67
232 235 5.452356 GGATTTCATGGATTTTCGGCATTCT 60.452 40.000 0.00 0.00 0.00 2.40
233 236 6.239008 GGATTTCATGGATTTTCGGCATTCTA 60.239 38.462 0.00 0.00 0.00 2.10
236 241 2.650322 TGGATTTTCGGCATTCTACCC 58.350 47.619 0.00 0.00 0.00 3.69
325 340 2.787473 TCTGCCGATCTTTGGTTCAT 57.213 45.000 0.00 0.00 0.00 2.57
342 362 8.417780 TTGGTTCATGTGTTTATGTGAAAAAG 57.582 30.769 0.00 0.00 32.93 2.27
449 469 6.149308 TGCATGATCTTCAAGTTGTCGTATTT 59.851 34.615 2.11 0.00 0.00 1.40
471 491 4.081406 TGACATGTCTTGCCATAAAAGCT 58.919 39.130 25.55 0.00 0.00 3.74
473 493 5.355071 TGACATGTCTTGCCATAAAAGCTAG 59.645 40.000 25.55 0.00 34.88 3.42
497 520 6.069963 AGCTTCCTGAGTTACTGAACCAATAT 60.070 38.462 0.00 0.00 36.08 1.28
555 579 2.400399 TCTGAAGCTGTAACGGTTTCG 58.600 47.619 0.00 0.00 43.02 3.46
572 596 0.942410 TCGCGACTGTTAAGGTGCAC 60.942 55.000 8.80 8.80 0.00 4.57
573 597 1.218875 CGCGACTGTTAAGGTGCACA 61.219 55.000 20.43 0.00 0.00 4.57
574 598 0.234884 GCGACTGTTAAGGTGCACAC 59.765 55.000 20.43 8.70 0.00 3.82
575 599 1.865865 CGACTGTTAAGGTGCACACT 58.134 50.000 20.43 10.61 0.00 3.55
576 600 2.210116 CGACTGTTAAGGTGCACACTT 58.790 47.619 20.43 20.08 0.00 3.16
577 601 3.386486 CGACTGTTAAGGTGCACACTTA 58.614 45.455 20.43 19.10 0.00 2.24
578 602 3.183775 CGACTGTTAAGGTGCACACTTAC 59.816 47.826 20.43 15.96 30.66 2.34
579 603 3.473625 ACTGTTAAGGTGCACACTTACC 58.526 45.455 20.43 15.48 37.23 2.85
580 604 2.478894 CTGTTAAGGTGCACACTTACCG 59.521 50.000 20.43 10.00 41.85 4.02
581 605 2.102757 TGTTAAGGTGCACACTTACCGA 59.897 45.455 20.43 6.53 41.85 4.69
582 606 2.443887 TAAGGTGCACACTTACCGAC 57.556 50.000 20.43 0.00 41.85 4.79
583 607 0.466543 AAGGTGCACACTTACCGACA 59.533 50.000 20.43 0.00 41.85 4.35
584 608 0.466543 AGGTGCACACTTACCGACAA 59.533 50.000 20.43 0.00 41.85 3.18
585 609 1.071699 AGGTGCACACTTACCGACAAT 59.928 47.619 20.43 0.00 41.85 2.71
586 610 1.877443 GGTGCACACTTACCGACAATT 59.123 47.619 20.43 0.00 0.00 2.32
587 611 3.068560 GGTGCACACTTACCGACAATTA 58.931 45.455 20.43 0.00 0.00 1.40
588 612 3.124636 GGTGCACACTTACCGACAATTAG 59.875 47.826 20.43 0.00 0.00 1.73
589 613 3.744426 GTGCACACTTACCGACAATTAGT 59.256 43.478 13.17 0.00 0.00 2.24
590 614 4.925054 GTGCACACTTACCGACAATTAGTA 59.075 41.667 13.17 0.00 0.00 1.82
591 615 5.579511 GTGCACACTTACCGACAATTAGTAT 59.420 40.000 13.17 0.00 0.00 2.12
592 616 5.579119 TGCACACTTACCGACAATTAGTATG 59.421 40.000 0.00 0.00 0.00 2.39
593 617 5.501897 GCACACTTACCGACAATTAGTATGC 60.502 44.000 0.00 0.00 32.91 3.14
594 618 5.006358 CACACTTACCGACAATTAGTATGCC 59.994 44.000 0.00 0.00 0.00 4.40
595 619 5.113383 CACTTACCGACAATTAGTATGCCA 58.887 41.667 0.00 0.00 0.00 4.92
596 620 5.758296 CACTTACCGACAATTAGTATGCCAT 59.242 40.000 0.00 0.00 0.00 4.40
597 621 6.926826 CACTTACCGACAATTAGTATGCCATA 59.073 38.462 0.00 0.00 0.00 2.74
598 622 7.602644 CACTTACCGACAATTAGTATGCCATAT 59.397 37.037 0.00 0.00 0.00 1.78
599 623 8.154856 ACTTACCGACAATTAGTATGCCATATT 58.845 33.333 0.00 0.00 0.00 1.28
600 624 6.801539 ACCGACAATTAGTATGCCATATTG 57.198 37.500 0.00 0.00 33.55 1.90
601 625 6.296026 ACCGACAATTAGTATGCCATATTGT 58.704 36.000 3.76 3.76 40.88 2.71
602 626 6.204688 ACCGACAATTAGTATGCCATATTGTG 59.795 38.462 7.99 0.00 38.97 3.33
603 627 6.079763 CGACAATTAGTATGCCATATTGTGC 58.920 40.000 7.99 1.49 38.97 4.57
604 628 6.073058 CGACAATTAGTATGCCATATTGTGCT 60.073 38.462 7.99 0.00 38.97 4.40
605 629 7.206981 ACAATTAGTATGCCATATTGTGCTC 57.793 36.000 3.38 0.00 37.85 4.26
606 630 6.207417 ACAATTAGTATGCCATATTGTGCTCC 59.793 38.462 3.38 0.00 37.85 4.70
607 631 3.146104 AGTATGCCATATTGTGCTCCC 57.854 47.619 0.00 0.00 0.00 4.30
608 632 1.806542 GTATGCCATATTGTGCTCCCG 59.193 52.381 0.00 0.00 0.00 5.14
609 633 0.183492 ATGCCATATTGTGCTCCCGT 59.817 50.000 0.00 0.00 0.00 5.28
610 634 0.034574 TGCCATATTGTGCTCCCGTT 60.035 50.000 0.00 0.00 0.00 4.44
611 635 1.102978 GCCATATTGTGCTCCCGTTT 58.897 50.000 0.00 0.00 0.00 3.60
612 636 1.476488 GCCATATTGTGCTCCCGTTTT 59.524 47.619 0.00 0.00 0.00 2.43
613 637 2.735126 GCCATATTGTGCTCCCGTTTTG 60.735 50.000 0.00 0.00 0.00 2.44
614 638 2.529151 CATATTGTGCTCCCGTTTTGC 58.471 47.619 0.00 0.00 0.00 3.68
615 639 0.885196 TATTGTGCTCCCGTTTTGCC 59.115 50.000 0.00 0.00 0.00 4.52
616 640 1.112315 ATTGTGCTCCCGTTTTGCCA 61.112 50.000 0.00 0.00 0.00 4.92
617 641 1.112315 TTGTGCTCCCGTTTTGCCAT 61.112 50.000 0.00 0.00 0.00 4.40
618 642 1.112315 TGTGCTCCCGTTTTGCCATT 61.112 50.000 0.00 0.00 0.00 3.16
619 643 0.033366 GTGCTCCCGTTTTGCCATTT 59.967 50.000 0.00 0.00 0.00 2.32
620 644 0.755686 TGCTCCCGTTTTGCCATTTT 59.244 45.000 0.00 0.00 0.00 1.82
621 645 1.147473 GCTCCCGTTTTGCCATTTTG 58.853 50.000 0.00 0.00 0.00 2.44
622 646 1.540146 GCTCCCGTTTTGCCATTTTGT 60.540 47.619 0.00 0.00 0.00 2.83
623 647 2.134346 CTCCCGTTTTGCCATTTTGTG 58.866 47.619 0.00 0.00 0.00 3.33
624 648 1.482593 TCCCGTTTTGCCATTTTGTGT 59.517 42.857 0.00 0.00 0.00 3.72
625 649 2.693591 TCCCGTTTTGCCATTTTGTGTA 59.306 40.909 0.00 0.00 0.00 2.90
626 650 3.322254 TCCCGTTTTGCCATTTTGTGTAT 59.678 39.130 0.00 0.00 0.00 2.29
627 651 4.523173 TCCCGTTTTGCCATTTTGTGTATA 59.477 37.500 0.00 0.00 0.00 1.47
628 652 5.186021 TCCCGTTTTGCCATTTTGTGTATAT 59.814 36.000 0.00 0.00 0.00 0.86
629 653 5.518487 CCCGTTTTGCCATTTTGTGTATATC 59.482 40.000 0.00 0.00 0.00 1.63
630 654 6.329496 CCGTTTTGCCATTTTGTGTATATCT 58.671 36.000 0.00 0.00 0.00 1.98
631 655 6.253298 CCGTTTTGCCATTTTGTGTATATCTG 59.747 38.462 0.00 0.00 0.00 2.90
632 656 7.026562 CGTTTTGCCATTTTGTGTATATCTGA 58.973 34.615 0.00 0.00 0.00 3.27
633 657 7.701924 CGTTTTGCCATTTTGTGTATATCTGAT 59.298 33.333 0.00 0.00 0.00 2.90
634 658 9.023967 GTTTTGCCATTTTGTGTATATCTGATC 57.976 33.333 0.00 0.00 0.00 2.92
635 659 8.523915 TTTGCCATTTTGTGTATATCTGATCT 57.476 30.769 0.00 0.00 0.00 2.75
636 660 7.500720 TGCCATTTTGTGTATATCTGATCTG 57.499 36.000 0.00 0.00 0.00 2.90
637 661 7.281841 TGCCATTTTGTGTATATCTGATCTGA 58.718 34.615 4.63 4.63 0.00 3.27
638 662 7.774625 TGCCATTTTGTGTATATCTGATCTGAA 59.225 33.333 6.37 0.00 0.00 3.02
639 663 8.288208 GCCATTTTGTGTATATCTGATCTGAAG 58.712 37.037 6.37 0.00 0.00 3.02
640 664 8.288208 CCATTTTGTGTATATCTGATCTGAAGC 58.712 37.037 6.37 0.00 0.00 3.86
641 665 9.053840 CATTTTGTGTATATCTGATCTGAAGCT 57.946 33.333 6.37 0.00 0.00 3.74
642 666 8.429493 TTTTGTGTATATCTGATCTGAAGCTG 57.571 34.615 6.37 0.00 0.00 4.24
643 667 6.721704 TGTGTATATCTGATCTGAAGCTGT 57.278 37.500 6.37 0.00 0.00 4.40
644 668 7.823745 TGTGTATATCTGATCTGAAGCTGTA 57.176 36.000 6.37 0.00 0.00 2.74
645 669 8.237811 TGTGTATATCTGATCTGAAGCTGTAA 57.762 34.615 6.37 0.00 0.00 2.41
646 670 8.138074 TGTGTATATCTGATCTGAAGCTGTAAC 58.862 37.037 6.37 1.50 0.00 2.50
647 671 7.324856 GTGTATATCTGATCTGAAGCTGTAACG 59.675 40.741 6.37 0.00 0.00 3.18
648 672 4.727507 ATCTGATCTGAAGCTGTAACGT 57.272 40.909 6.37 0.00 0.00 3.99
649 673 4.521130 TCTGATCTGAAGCTGTAACGTT 57.479 40.909 5.88 5.88 0.00 3.99
650 674 4.883083 TCTGATCTGAAGCTGTAACGTTT 58.117 39.130 5.91 0.00 0.00 3.60
651 675 5.297547 TCTGATCTGAAGCTGTAACGTTTT 58.702 37.500 5.91 0.00 0.00 2.43
652 676 5.405571 TCTGATCTGAAGCTGTAACGTTTTC 59.594 40.000 5.91 4.27 0.00 2.29
653 677 5.297547 TGATCTGAAGCTGTAACGTTTTCT 58.702 37.500 5.91 0.00 0.00 2.52
654 678 5.405571 TGATCTGAAGCTGTAACGTTTTCTC 59.594 40.000 5.91 0.00 0.00 2.87
655 679 4.689071 TCTGAAGCTGTAACGTTTTCTCA 58.311 39.130 5.91 0.66 0.00 3.27
656 680 5.113383 TCTGAAGCTGTAACGTTTTCTCAA 58.887 37.500 5.91 0.00 0.00 3.02
657 681 5.006358 TCTGAAGCTGTAACGTTTTCTCAAC 59.994 40.000 5.91 0.00 0.00 3.18
658 682 4.034742 TGAAGCTGTAACGTTTTCTCAACC 59.965 41.667 5.91 0.00 0.00 3.77
659 683 2.542595 AGCTGTAACGTTTTCTCAACCG 59.457 45.455 5.91 0.00 0.00 4.44
722 746 2.545106 CTCCTGTTTTGCCATTTTGTGC 59.455 45.455 0.00 0.00 0.00 4.57
755 779 3.251571 GAAGCTGTAACGGTTTCTCGAT 58.748 45.455 0.00 0.00 29.41 3.59
761 785 5.462398 GCTGTAACGGTTTCTCGATCATTAT 59.538 40.000 0.00 0.00 0.00 1.28
772 796 4.340950 TCTCGATCATTATGGTGCACACTA 59.659 41.667 20.43 6.34 0.00 2.74
819 843 2.808543 CAGCCACTTACACCAGACTTTC 59.191 50.000 0.00 0.00 0.00 2.62
820 844 2.438021 AGCCACTTACACCAGACTTTCA 59.562 45.455 0.00 0.00 0.00 2.69
836 860 0.925558 TTCATCATAGGGCCTGCCAA 59.074 50.000 18.53 0.00 37.98 4.52
904 930 5.996513 TGCATATTGGCAAGTCAATTTTTGT 59.003 32.000 5.96 0.00 41.65 2.83
922 948 4.734398 TTGTCATCAAACCAAACAGCTT 57.266 36.364 0.00 0.00 0.00 3.74
934 961 5.548406 ACCAAACAGCTTCGTAGTCTTAAT 58.452 37.500 0.00 0.00 0.00 1.40
1015 1042 7.410120 AATTGGGATATGAGTTGTTTCCTTC 57.590 36.000 0.00 0.00 0.00 3.46
1114 1149 0.678048 CCTAAAGGGGCTGCAGTGAC 60.678 60.000 16.64 6.12 0.00 3.67
1144 1179 6.481313 TCTTTCATGTCTGAGTTGTCTTTCAG 59.519 38.462 0.00 0.00 41.67 3.02
1190 1225 6.241645 AGCTTCAAGTTTGCTAACCTATCTT 58.758 36.000 7.43 0.00 35.05 2.40
1206 1241 7.976135 ACCTATCTTGCAAAAGCATATCTAG 57.024 36.000 0.00 0.00 0.00 2.43
1243 1278 1.664016 CGTGTTTTGAGCATGAGTGGC 60.664 52.381 0.00 0.00 0.00 5.01
1246 1281 2.034939 TGTTTTGAGCATGAGTGGCAAG 59.965 45.455 0.00 0.00 0.00 4.01
1274 1311 7.441760 ACTCAATATTCATGAGCAGAGTGATTC 59.558 37.037 13.82 0.00 46.56 2.52
1305 1348 2.802816 GGGTCTGCATCTATTAGTTGCG 59.197 50.000 17.59 13.51 42.31 4.85
1306 1349 2.221981 GGTCTGCATCTATTAGTTGCGC 59.778 50.000 17.59 0.00 42.31 6.09
1311 1354 2.838736 CATCTATTAGTTGCGCTGGGT 58.161 47.619 9.73 0.00 0.00 4.51
1313 1356 2.627945 TCTATTAGTTGCGCTGGGTTG 58.372 47.619 9.73 0.00 0.00 3.77
1349 1540 4.060900 TCATGTCTGAGTTGTCTTTCAGC 58.939 43.478 0.00 0.00 40.44 4.26
1393 1584 7.392494 AAGCTTTAAGTTTGCTAACCTATCC 57.608 36.000 7.43 0.00 35.85 2.59
1408 1606 6.620877 AACCTATCCGCATATCTAATTCCA 57.379 37.500 0.00 0.00 0.00 3.53
1433 1631 2.606308 GGTGCAGATGTGTTTTGAGCAG 60.606 50.000 0.00 0.00 0.00 4.24
1434 1632 2.033801 GTGCAGATGTGTTTTGAGCAGT 59.966 45.455 0.00 0.00 0.00 4.40
1443 1641 2.357637 TGTTTTGAGCAGTAGTGGCAAC 59.642 45.455 0.00 0.00 0.00 4.17
1482 1681 3.165875 AGAGTGATTCTGGTTTCGAGGA 58.834 45.455 0.00 0.00 33.93 3.71
1549 1750 2.435805 TCTGAGTTGCCTTTCAGTGACT 59.564 45.455 0.00 0.00 41.21 3.41
1614 1815 7.986085 AGCAAAAGCATATCTAATTCCGTAT 57.014 32.000 0.00 0.00 0.00 3.06
1795 1999 8.590719 ACTGAAGCTTAGTTAGTCAAGTTAAC 57.409 34.615 0.00 0.00 0.00 2.01
1798 2002 9.204570 TGAAGCTTAGTTAGTCAAGTTAACATC 57.795 33.333 8.61 0.00 34.28 3.06
1800 2004 8.764524 AGCTTAGTTAGTCAAGTTAACATCTG 57.235 34.615 8.61 2.37 34.28 2.90
1801 2005 7.332182 AGCTTAGTTAGTCAAGTTAACATCTGC 59.668 37.037 8.61 0.00 34.28 4.26
1816 2036 3.525199 ACATCTGCTTCCCTCCTAAATGT 59.475 43.478 0.00 0.00 0.00 2.71
1851 2071 1.668826 TTCAGCTACTTCCCCCATGT 58.331 50.000 0.00 0.00 0.00 3.21
1890 2110 4.501400 GCTTTGGGAACTTGCAACTTACAT 60.501 41.667 0.00 0.00 0.00 2.29
2112 2338 1.604278 AGGTTGAAAAGAAGTCAGCGC 59.396 47.619 0.00 0.00 0.00 5.92
2126 2352 1.956170 AGCGCACGTGAAGGTTGAG 60.956 57.895 22.23 0.27 0.00 3.02
2137 2363 5.244178 ACGTGAAGGTTGAGAAGAACTCTAT 59.756 40.000 0.00 0.00 45.13 1.98
2144 2370 5.335740 GGTTGAGAAGAACTCTATGTCGACA 60.336 44.000 22.48 22.48 45.13 4.35
2154 2380 4.278669 ACTCTATGTCGACAACTGTGAAGT 59.721 41.667 24.13 15.11 0.00 3.01
2204 2430 4.622701 AAAGAATTCTATGTCGGCAAGC 57.377 40.909 8.75 0.00 0.00 4.01
2255 2511 6.133356 TGATTCCAAAGTCCAAGTTAAGGTT 58.867 36.000 0.00 0.00 0.00 3.50
2342 2598 0.394899 CCCCAAAGCTGACATCCCTC 60.395 60.000 0.00 0.00 0.00 4.30
2396 2652 1.493311 GGAGCTTCTTGTTGACGCG 59.507 57.895 3.53 3.53 43.65 6.01
2453 2709 9.295825 GATGACAGAGAGGAAATAAGAGATCTA 57.704 37.037 0.00 0.00 0.00 1.98
2537 2793 2.683933 AGGATCGGGCGTTCCACT 60.684 61.111 0.00 0.00 36.67 4.00
2579 2835 4.084287 ACAGGTCGATACTGTTCAACCTA 58.916 43.478 16.95 0.00 46.38 3.08
2657 2913 1.708993 GGAGCCTGGTGGATATGCCA 61.709 60.000 0.00 0.00 46.96 4.92
2780 3036 3.726517 CAGTTCAAGTGCGGGCGG 61.727 66.667 0.00 0.00 0.00 6.13
2783 3039 4.555709 TTCAAGTGCGGGCGGTGT 62.556 61.111 0.00 0.00 0.00 4.16
2819 3075 0.101399 CCTACTACCAGCTGCAGACG 59.899 60.000 20.43 6.89 0.00 4.18
2849 3105 1.736645 CGAGCCCATGACGACGTTT 60.737 57.895 0.13 0.00 0.00 3.60
2896 3152 1.375268 GGAAGTTCTGCTGAGCGCT 60.375 57.895 11.27 11.27 40.11 5.92
2898 3154 2.238071 GAAGTTCTGCTGAGCGCTGC 62.238 60.000 18.48 14.85 40.11 5.25
2899 3155 2.728443 AAGTTCTGCTGAGCGCTGCT 62.728 55.000 18.48 2.68 43.88 4.24
2911 3167 3.782244 GCTGCTGCGGACTTGTCG 61.782 66.667 13.72 0.00 0.00 4.35
2912 3168 3.114616 CTGCTGCGGACTTGTCGG 61.115 66.667 1.17 4.30 0.00 4.79
2913 3169 3.573772 CTGCTGCGGACTTGTCGGA 62.574 63.158 1.17 0.86 0.00 4.55
2915 3171 2.432628 CTGCGGACTTGTCGGACC 60.433 66.667 5.55 0.00 0.00 4.46
2916 3172 4.351938 TGCGGACTTGTCGGACCG 62.352 66.667 7.84 7.84 46.74 4.79
2918 3174 4.052229 CGGACTTGTCGGACCGCT 62.052 66.667 9.66 0.00 38.98 5.52
2920 3176 1.139095 GGACTTGTCGGACCGCTAG 59.861 63.158 9.66 12.80 0.00 3.42
2921 3177 1.516603 GACTTGTCGGACCGCTAGC 60.517 63.158 9.66 4.06 0.00 3.42
2938 3200 1.589803 AGCGCGTTTTTCCTGTTAGT 58.410 45.000 8.43 0.00 0.00 2.24
2947 3209 2.380084 TTCCTGTTAGTGATGCCGTC 57.620 50.000 0.00 0.00 0.00 4.79
2966 3228 3.158676 GTCTCAGTCTTGACAGGTAGGT 58.841 50.000 3.49 0.00 33.75 3.08
2967 3229 3.574826 GTCTCAGTCTTGACAGGTAGGTT 59.425 47.826 3.49 0.00 33.75 3.50
2968 3230 3.574396 TCTCAGTCTTGACAGGTAGGTTG 59.426 47.826 3.49 0.00 0.00 3.77
2969 3231 2.632996 TCAGTCTTGACAGGTAGGTTGG 59.367 50.000 3.49 0.00 0.00 3.77
2970 3232 1.978580 AGTCTTGACAGGTAGGTTGGG 59.021 52.381 3.49 0.00 0.00 4.12
2971 3233 1.697982 GTCTTGACAGGTAGGTTGGGT 59.302 52.381 0.00 0.00 0.00 4.51
2978 3240 0.104090 AGGTAGGTTGGGTTGGTCCT 60.104 55.000 0.00 0.00 36.25 3.85
2979 3241 0.037734 GGTAGGTTGGGTTGGTCCTG 59.962 60.000 0.00 0.00 36.25 3.86
3001 3263 5.741011 TGTTTTTCGTATGCTTAGGAGGAT 58.259 37.500 2.76 0.00 37.70 3.24
3092 3361 5.105392 ACCGCATAAATGTTGTTGGATGAAT 60.105 36.000 0.00 0.00 0.00 2.57
3111 3380 5.953183 TGAATTCATGTTGCCTGATGTAAC 58.047 37.500 3.38 0.00 39.72 2.50
3125 3395 7.882791 TGCCTGATGTAACTTTTATGAAGAGAA 59.117 33.333 0.00 0.00 0.00 2.87
3142 3412 8.589335 TGAAGAGAATGTTCAGTGTTAGTTAC 57.411 34.615 0.00 0.00 44.04 2.50
3181 3451 9.368416 ACATAGTGGTACTGTGATAGTAATGAT 57.632 33.333 11.81 0.00 43.24 2.45
3201 3471 4.873827 TGATTATTTAGGAACAGACGGTGC 59.126 41.667 0.00 0.00 0.00 5.01
3203 3473 2.922740 TTTAGGAACAGACGGTGCTT 57.077 45.000 0.00 0.00 0.00 3.91
3209 3479 0.039074 AACAGACGGTGCTTCTCTCG 60.039 55.000 0.00 0.00 0.00 4.04
3212 3482 2.049063 ACGGTGCTTCTCTCGTGC 60.049 61.111 0.00 0.00 34.40 5.34
3219 3489 0.174389 GCTTCTCTCGTGCAGATGGA 59.826 55.000 0.00 0.00 0.00 3.41
3239 3509 0.249657 GACATGAGGCCATCGGAGTC 60.250 60.000 5.01 1.05 0.00 3.36
3240 3510 1.070445 CATGAGGCCATCGGAGTCC 59.930 63.158 5.01 0.00 0.00 3.85
3244 3514 2.187946 GGCCATCGGAGTCCAGTG 59.812 66.667 10.49 6.89 0.00 3.66
3274 3544 9.542462 TTGAGTTGTTAGATTATACATACAGGC 57.458 33.333 0.00 0.00 0.00 4.85
3275 3545 8.148351 TGAGTTGTTAGATTATACATACAGGCC 58.852 37.037 0.00 0.00 0.00 5.19
3276 3546 8.263854 AGTTGTTAGATTATACATACAGGCCT 57.736 34.615 0.00 0.00 0.00 5.19
3277 3547 8.150945 AGTTGTTAGATTATACATACAGGCCTG 58.849 37.037 31.60 31.60 0.00 4.85
3278 3548 6.464222 TGTTAGATTATACATACAGGCCTGC 58.536 40.000 33.06 12.03 0.00 4.85
3279 3549 6.270000 TGTTAGATTATACATACAGGCCTGCT 59.730 38.462 33.06 21.13 0.00 4.24
3280 3550 5.413309 AGATTATACATACAGGCCTGCTC 57.587 43.478 33.06 14.13 0.00 4.26
3281 3551 4.223923 AGATTATACATACAGGCCTGCTCC 59.776 45.833 33.06 9.71 0.00 4.70
3282 3552 0.681733 ATACATACAGGCCTGCTCCG 59.318 55.000 33.06 20.11 0.00 4.63
3283 3553 2.028125 TACATACAGGCCTGCTCCGC 62.028 60.000 33.06 0.00 0.00 5.54
3284 3554 2.765807 ATACAGGCCTGCTCCGCT 60.766 61.111 33.06 14.68 0.00 5.52
3285 3555 3.099211 ATACAGGCCTGCTCCGCTG 62.099 63.158 33.06 7.84 0.00 5.18
3296 3566 1.376424 CTCCGCTGTGATGCTGGTT 60.376 57.895 0.00 0.00 0.00 3.67
3298 3568 1.672030 CCGCTGTGATGCTGGTTGA 60.672 57.895 0.00 0.00 0.00 3.18
3312 3582 3.785486 CTGGTTGATCGCATAGTGAAGA 58.215 45.455 0.00 0.00 0.00 2.87
3316 3586 4.184629 GTTGATCGCATAGTGAAGAACCT 58.815 43.478 0.00 0.00 0.00 3.50
3335 3605 3.200165 ACCTAAGGAGTTATTCTGGTGCC 59.800 47.826 0.00 0.00 0.00 5.01
3356 3636 1.691196 TTGGAAGAAGTGGGTGCAAG 58.309 50.000 0.00 0.00 0.00 4.01
3392 3672 6.334102 TCTCGAGCCTTATTTCTCCTATTC 57.666 41.667 7.81 0.00 0.00 1.75
3420 3703 5.721960 TCTTCTTCTACCTAATGCACCTTCT 59.278 40.000 0.00 0.00 0.00 2.85
3425 3708 3.252974 ACCTAATGCACCTTCTTCTCG 57.747 47.619 0.00 0.00 0.00 4.04
3430 3713 0.039437 TGCACCTTCTTCTCGACGTC 60.039 55.000 5.18 5.18 0.00 4.34
3432 3715 0.454620 CACCTTCTTCTCGACGTCCG 60.455 60.000 10.58 5.50 40.25 4.79
3449 3732 2.124278 GGCCGGGGATGACCTTTC 60.124 66.667 2.18 0.00 40.03 2.62
3451 3734 1.303282 GCCGGGGATGACCTTTCTT 59.697 57.895 2.18 0.00 40.03 2.52
3472 3789 3.731652 TTTTGCCACATGGACTGAAAG 57.268 42.857 0.87 0.00 37.39 2.62
3506 3823 7.607991 CCATATGTACAAGTCTGAAGTTCCTTT 59.392 37.037 0.00 0.00 0.00 3.11
3508 3825 5.047847 TGTACAAGTCTGAAGTTCCTTTCG 58.952 41.667 0.00 0.00 0.00 3.46
3513 3830 4.372656 AGTCTGAAGTTCCTTTCGTCTTG 58.627 43.478 0.00 0.00 0.00 3.02
3523 3840 3.258372 TCCTTTCGTCTTGCAGTATCAGT 59.742 43.478 0.00 0.00 0.00 3.41
3528 3845 7.115520 CCTTTCGTCTTGCAGTATCAGTATATG 59.884 40.741 0.00 0.00 0.00 1.78
3530 3847 7.039313 TCGTCTTGCAGTATCAGTATATGTT 57.961 36.000 0.00 0.00 0.00 2.71
3531 3848 7.139392 TCGTCTTGCAGTATCAGTATATGTTC 58.861 38.462 0.00 0.00 0.00 3.18
3532 3849 7.013369 TCGTCTTGCAGTATCAGTATATGTTCT 59.987 37.037 0.00 0.00 0.00 3.01
3533 3850 7.114106 CGTCTTGCAGTATCAGTATATGTTCTG 59.886 40.741 0.00 0.00 0.00 3.02
3534 3851 7.923344 GTCTTGCAGTATCAGTATATGTTCTGT 59.077 37.037 0.00 0.00 33.89 3.41
3535 3852 8.478066 TCTTGCAGTATCAGTATATGTTCTGTT 58.522 33.333 0.00 0.00 33.89 3.16
3536 3853 8.648557 TTGCAGTATCAGTATATGTTCTGTTC 57.351 34.615 0.00 0.00 33.89 3.18
3537 3854 7.210174 TGCAGTATCAGTATATGTTCTGTTCC 58.790 38.462 0.00 0.00 33.89 3.62
3538 3855 6.363626 GCAGTATCAGTATATGTTCTGTTCCG 59.636 42.308 0.00 0.00 33.89 4.30
3539 3856 7.426410 CAGTATCAGTATATGTTCTGTTCCGT 58.574 38.462 0.00 0.00 33.89 4.69
3540 3857 7.591795 CAGTATCAGTATATGTTCTGTTCCGTC 59.408 40.741 0.00 0.00 33.89 4.79
3541 3858 5.907866 TCAGTATATGTTCTGTTCCGTCA 57.092 39.130 0.00 0.00 33.89 4.35
3542 3859 6.275494 TCAGTATATGTTCTGTTCCGTCAA 57.725 37.500 0.00 0.00 33.89 3.18
3543 3860 6.693466 TCAGTATATGTTCTGTTCCGTCAAA 58.307 36.000 0.00 0.00 33.89 2.69
3544 3861 6.811665 TCAGTATATGTTCTGTTCCGTCAAAG 59.188 38.462 0.00 0.00 33.89 2.77
3545 3862 4.946784 ATATGTTCTGTTCCGTCAAAGC 57.053 40.909 0.00 0.00 0.00 3.51
3546 3863 1.305201 TGTTCTGTTCCGTCAAAGCC 58.695 50.000 0.00 0.00 0.00 4.35
3547 3864 1.134220 TGTTCTGTTCCGTCAAAGCCT 60.134 47.619 0.00 0.00 0.00 4.58
3548 3865 1.947456 GTTCTGTTCCGTCAAAGCCTT 59.053 47.619 0.00 0.00 0.00 4.35
3549 3866 1.878953 TCTGTTCCGTCAAAGCCTTC 58.121 50.000 0.00 0.00 0.00 3.46
3550 3867 0.875059 CTGTTCCGTCAAAGCCTTCC 59.125 55.000 0.00 0.00 0.00 3.46
3551 3868 0.536460 TGTTCCGTCAAAGCCTTCCC 60.536 55.000 0.00 0.00 0.00 3.97
3552 3869 0.536460 GTTCCGTCAAAGCCTTCCCA 60.536 55.000 0.00 0.00 0.00 4.37
3553 3870 0.404040 TTCCGTCAAAGCCTTCCCAT 59.596 50.000 0.00 0.00 0.00 4.00
3554 3871 0.322456 TCCGTCAAAGCCTTCCCATG 60.322 55.000 0.00 0.00 0.00 3.66
3555 3872 1.508088 CGTCAAAGCCTTCCCATGC 59.492 57.895 0.00 0.00 0.00 4.06
3556 3873 1.893062 GTCAAAGCCTTCCCATGCC 59.107 57.895 0.00 0.00 0.00 4.40
3557 3874 0.613012 GTCAAAGCCTTCCCATGCCT 60.613 55.000 0.00 0.00 0.00 4.75
3558 3875 0.323725 TCAAAGCCTTCCCATGCCTC 60.324 55.000 0.00 0.00 0.00 4.70
3559 3876 1.000866 AAAGCCTTCCCATGCCTCC 59.999 57.895 0.00 0.00 0.00 4.30
3560 3877 1.803453 AAAGCCTTCCCATGCCTCCA 61.803 55.000 0.00 0.00 0.00 3.86
3561 3878 1.587522 AAGCCTTCCCATGCCTCCAT 61.588 55.000 0.00 0.00 0.00 3.41
3562 3879 0.698886 AGCCTTCCCATGCCTCCATA 60.699 55.000 0.00 0.00 0.00 2.74
3563 3880 0.407139 GCCTTCCCATGCCTCCATAT 59.593 55.000 0.00 0.00 0.00 1.78
3564 3881 1.889699 GCCTTCCCATGCCTCCATATG 60.890 57.143 0.00 0.00 0.00 1.78
3565 3882 1.426598 CCTTCCCATGCCTCCATATGT 59.573 52.381 1.24 0.00 0.00 2.29
3566 3883 2.158415 CCTTCCCATGCCTCCATATGTT 60.158 50.000 1.24 0.00 0.00 2.71
3567 3884 2.957402 TCCCATGCCTCCATATGTTC 57.043 50.000 1.24 0.00 0.00 3.18
3571 3888 3.181436 CCCATGCCTCCATATGTTCTCTT 60.181 47.826 1.24 0.00 0.00 2.85
3585 3902 5.048846 TGTTCTCTTCTACCAAAGCCTTT 57.951 39.130 0.00 0.00 0.00 3.11
3594 3911 0.906282 CCAAAGCCTTTCCCATGCCT 60.906 55.000 0.00 0.00 0.00 4.75
3612 3929 0.769873 CTCCCTATTGGCTGGATGCT 59.230 55.000 0.00 0.00 42.39 3.79
3655 3972 0.682532 TGCCACTTCAACTTGTGCCA 60.683 50.000 0.00 0.00 33.26 4.92
3670 3999 5.529800 ACTTGTGCCACTTCTTACGTATTTT 59.470 36.000 0.00 0.00 0.00 1.82
3734 4063 9.732130 AAGTCCTGGCTTATGAAGATTATTATC 57.268 33.333 2.19 0.00 0.00 1.75
3773 4105 1.319541 GGAGGTGAGCGATGCTACTA 58.680 55.000 0.00 0.00 39.88 1.82
3795 4127 4.600012 ACAACAGCTTATGCATAACGTC 57.400 40.909 15.21 7.61 42.74 4.34
3800 4132 3.121944 CAGCTTATGCATAACGTCGGATC 59.878 47.826 15.21 0.00 42.74 3.36
3801 4133 3.005897 AGCTTATGCATAACGTCGGATCT 59.994 43.478 15.21 0.00 42.74 2.75
3802 4134 3.121944 GCTTATGCATAACGTCGGATCTG 59.878 47.826 15.21 3.20 39.41 2.90
3803 4135 2.154854 ATGCATAACGTCGGATCTGG 57.845 50.000 0.00 0.00 0.00 3.86
3804 4136 0.821517 TGCATAACGTCGGATCTGGT 59.178 50.000 0.62 0.00 0.00 4.00
3805 4137 2.025898 TGCATAACGTCGGATCTGGTA 58.974 47.619 0.62 0.00 0.00 3.25
3806 4138 2.034179 TGCATAACGTCGGATCTGGTAG 59.966 50.000 0.62 0.00 0.00 3.18
3807 4139 2.034305 GCATAACGTCGGATCTGGTAGT 59.966 50.000 0.62 0.00 0.00 2.73
3808 4140 3.251729 GCATAACGTCGGATCTGGTAGTA 59.748 47.826 0.62 0.00 0.00 1.82
3809 4141 4.082895 GCATAACGTCGGATCTGGTAGTAT 60.083 45.833 0.62 0.00 0.00 2.12
3810 4142 3.984508 AACGTCGGATCTGGTAGTATG 57.015 47.619 0.62 0.00 0.00 2.39
3811 4143 2.228059 ACGTCGGATCTGGTAGTATGG 58.772 52.381 0.62 0.00 0.00 2.74
3812 4144 1.540267 CGTCGGATCTGGTAGTATGGG 59.460 57.143 0.62 0.00 0.00 4.00
3813 4145 2.812983 CGTCGGATCTGGTAGTATGGGA 60.813 54.545 0.62 0.00 0.00 4.37
3814 4146 3.432378 GTCGGATCTGGTAGTATGGGAT 58.568 50.000 0.62 0.00 0.00 3.85
3815 4147 3.833070 GTCGGATCTGGTAGTATGGGATT 59.167 47.826 0.62 0.00 0.00 3.01
3816 4148 5.014858 GTCGGATCTGGTAGTATGGGATTA 58.985 45.833 0.62 0.00 0.00 1.75
3817 4149 5.479375 GTCGGATCTGGTAGTATGGGATTAA 59.521 44.000 0.62 0.00 0.00 1.40
3818 4150 6.154706 GTCGGATCTGGTAGTATGGGATTAAT 59.845 42.308 0.62 0.00 0.00 1.40
3819 4151 6.154534 TCGGATCTGGTAGTATGGGATTAATG 59.845 42.308 0.62 0.00 0.00 1.90
3820 4152 6.070767 CGGATCTGGTAGTATGGGATTAATGT 60.071 42.308 0.00 0.00 0.00 2.71
3821 4153 7.527196 CGGATCTGGTAGTATGGGATTAATGTT 60.527 40.741 0.00 0.00 0.00 2.71
3822 4154 8.822805 GGATCTGGTAGTATGGGATTAATGTTA 58.177 37.037 0.00 0.00 0.00 2.41
3890 4222 8.610248 TGTTTTATACGAAGAAACTTGATGGA 57.390 30.769 0.00 0.00 35.04 3.41
3891 4223 8.717821 TGTTTTATACGAAGAAACTTGATGGAG 58.282 33.333 0.00 0.00 35.04 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 1.620323 TGTCCATCATAGGCGGATCAG 59.380 52.381 0.00 0.00 0.00 2.90
152 155 2.627699 ACCAGTCAACCGCAAATTCATT 59.372 40.909 0.00 0.00 0.00 2.57
163 166 2.331265 GGTGCAAGACCAGTCAACC 58.669 57.895 0.00 0.00 45.34 3.77
219 222 4.170468 AGATGGGTAGAATGCCGAAAAT 57.830 40.909 0.00 0.00 44.50 1.82
228 231 3.969976 TGCTAGCAGAAGATGGGTAGAAT 59.030 43.478 14.93 0.00 37.30 2.40
229 232 3.374764 TGCTAGCAGAAGATGGGTAGAA 58.625 45.455 14.93 0.00 37.30 2.10
231 234 3.133721 ACTTGCTAGCAGAAGATGGGTAG 59.866 47.826 20.69 12.62 37.97 3.18
232 235 3.107601 ACTTGCTAGCAGAAGATGGGTA 58.892 45.455 20.69 1.15 0.00 3.69
233 236 1.912043 ACTTGCTAGCAGAAGATGGGT 59.088 47.619 20.69 7.77 0.00 4.51
236 241 6.047870 AGTTATGACTTGCTAGCAGAAGATG 58.952 40.000 20.69 9.92 29.87 2.90
325 340 8.877779 CCAAATCAACTTTTTCACATAAACACA 58.122 29.630 0.00 0.00 0.00 3.72
342 362 4.219033 CACGCTTCACTTACCAAATCAAC 58.781 43.478 0.00 0.00 0.00 3.18
425 445 5.725110 ATACGACAACTTGAAGATCATGC 57.275 39.130 0.00 0.00 0.00 4.06
460 480 3.545703 TCAGGAAGCTAGCTTTTATGGC 58.454 45.455 29.84 16.07 36.26 4.40
471 491 4.157246 TGGTTCAGTAACTCAGGAAGCTA 58.843 43.478 0.00 0.00 38.28 3.32
473 493 3.402628 TGGTTCAGTAACTCAGGAAGC 57.597 47.619 0.00 0.00 38.03 3.86
497 520 4.662468 TGGCAAAACAGAGCACAATAAA 57.338 36.364 0.00 0.00 0.00 1.40
555 579 0.234884 GTGTGCACCTTAACAGTCGC 59.765 55.000 15.69 0.00 0.00 5.19
572 596 5.113383 TGGCATACTAATTGTCGGTAAGTG 58.887 41.667 0.00 0.00 0.00 3.16
573 597 5.347620 TGGCATACTAATTGTCGGTAAGT 57.652 39.130 0.00 0.00 0.00 2.24
574 598 8.443160 CAATATGGCATACTAATTGTCGGTAAG 58.557 37.037 9.83 0.00 0.00 2.34
575 599 7.934665 ACAATATGGCATACTAATTGTCGGTAA 59.065 33.333 16.73 0.00 36.33 2.85
576 600 7.386573 CACAATATGGCATACTAATTGTCGGTA 59.613 37.037 18.71 0.00 38.39 4.02
577 601 6.204688 CACAATATGGCATACTAATTGTCGGT 59.795 38.462 18.71 1.17 38.39 4.69
578 602 6.602179 CACAATATGGCATACTAATTGTCGG 58.398 40.000 18.71 9.05 38.39 4.79
579 603 6.073058 AGCACAATATGGCATACTAATTGTCG 60.073 38.462 18.71 15.57 38.39 4.35
580 604 7.206981 AGCACAATATGGCATACTAATTGTC 57.793 36.000 18.71 14.51 38.39 3.18
581 605 6.207417 GGAGCACAATATGGCATACTAATTGT 59.793 38.462 16.73 16.73 40.44 2.71
582 606 6.349611 GGGAGCACAATATGGCATACTAATTG 60.350 42.308 9.83 13.46 34.48 2.32
583 607 5.711976 GGGAGCACAATATGGCATACTAATT 59.288 40.000 9.83 0.00 0.00 1.40
584 608 5.256474 GGGAGCACAATATGGCATACTAAT 58.744 41.667 9.83 0.00 0.00 1.73
585 609 4.651778 GGGAGCACAATATGGCATACTAA 58.348 43.478 9.83 0.00 0.00 2.24
586 610 3.306710 CGGGAGCACAATATGGCATACTA 60.307 47.826 9.83 0.00 0.00 1.82
587 611 2.550855 CGGGAGCACAATATGGCATACT 60.551 50.000 9.83 1.57 0.00 2.12
588 612 1.806542 CGGGAGCACAATATGGCATAC 59.193 52.381 9.83 0.00 0.00 2.39
589 613 1.419762 ACGGGAGCACAATATGGCATA 59.580 47.619 10.07 10.07 0.00 3.14
590 614 0.183492 ACGGGAGCACAATATGGCAT 59.817 50.000 4.88 4.88 0.00 4.40
591 615 0.034574 AACGGGAGCACAATATGGCA 60.035 50.000 0.00 0.00 0.00 4.92
592 616 1.102978 AAACGGGAGCACAATATGGC 58.897 50.000 0.00 0.00 0.00 4.40
593 617 2.735126 GCAAAACGGGAGCACAATATGG 60.735 50.000 0.00 0.00 0.00 2.74
594 618 2.529151 GCAAAACGGGAGCACAATATG 58.471 47.619 0.00 0.00 0.00 1.78
595 619 1.476488 GGCAAAACGGGAGCACAATAT 59.524 47.619 0.00 0.00 0.00 1.28
596 620 0.885196 GGCAAAACGGGAGCACAATA 59.115 50.000 0.00 0.00 0.00 1.90
597 621 1.112315 TGGCAAAACGGGAGCACAAT 61.112 50.000 0.00 0.00 0.00 2.71
598 622 1.112315 ATGGCAAAACGGGAGCACAA 61.112 50.000 0.00 0.00 0.00 3.33
599 623 1.112315 AATGGCAAAACGGGAGCACA 61.112 50.000 0.00 0.00 0.00 4.57
600 624 0.033366 AAATGGCAAAACGGGAGCAC 59.967 50.000 0.00 0.00 0.00 4.40
601 625 0.755686 AAAATGGCAAAACGGGAGCA 59.244 45.000 0.00 0.00 0.00 4.26
602 626 1.147473 CAAAATGGCAAAACGGGAGC 58.853 50.000 0.00 0.00 0.00 4.70
603 627 2.134346 CACAAAATGGCAAAACGGGAG 58.866 47.619 0.00 0.00 0.00 4.30
604 628 1.482593 ACACAAAATGGCAAAACGGGA 59.517 42.857 0.00 0.00 0.00 5.14
605 629 1.946745 ACACAAAATGGCAAAACGGG 58.053 45.000 0.00 0.00 0.00 5.28
606 630 6.253298 CAGATATACACAAAATGGCAAAACGG 59.747 38.462 0.00 0.00 0.00 4.44
607 631 7.026562 TCAGATATACACAAAATGGCAAAACG 58.973 34.615 0.00 0.00 0.00 3.60
608 632 8.931385 ATCAGATATACACAAAATGGCAAAAC 57.069 30.769 0.00 0.00 0.00 2.43
609 633 8.970020 AGATCAGATATACACAAAATGGCAAAA 58.030 29.630 0.00 0.00 0.00 2.44
610 634 8.407832 CAGATCAGATATACACAAAATGGCAAA 58.592 33.333 0.00 0.00 0.00 3.68
611 635 7.774625 TCAGATCAGATATACACAAAATGGCAA 59.225 33.333 0.00 0.00 0.00 4.52
612 636 7.281841 TCAGATCAGATATACACAAAATGGCA 58.718 34.615 0.00 0.00 0.00 4.92
613 637 7.734924 TCAGATCAGATATACACAAAATGGC 57.265 36.000 0.00 0.00 0.00 4.40
614 638 8.288208 GCTTCAGATCAGATATACACAAAATGG 58.712 37.037 0.00 0.00 0.00 3.16
615 639 9.053840 AGCTTCAGATCAGATATACACAAAATG 57.946 33.333 0.00 0.00 0.00 2.32
616 640 9.053840 CAGCTTCAGATCAGATATACACAAAAT 57.946 33.333 0.00 0.00 0.00 1.82
617 641 8.043113 ACAGCTTCAGATCAGATATACACAAAA 58.957 33.333 0.00 0.00 0.00 2.44
618 642 7.559486 ACAGCTTCAGATCAGATATACACAAA 58.441 34.615 0.00 0.00 0.00 2.83
619 643 7.117285 ACAGCTTCAGATCAGATATACACAA 57.883 36.000 0.00 0.00 0.00 3.33
620 644 6.721704 ACAGCTTCAGATCAGATATACACA 57.278 37.500 0.00 0.00 0.00 3.72
621 645 7.324856 CGTTACAGCTTCAGATCAGATATACAC 59.675 40.741 0.00 0.00 0.00 2.90
622 646 7.013369 ACGTTACAGCTTCAGATCAGATATACA 59.987 37.037 0.00 0.00 0.00 2.29
623 647 7.364200 ACGTTACAGCTTCAGATCAGATATAC 58.636 38.462 0.00 0.00 0.00 1.47
624 648 7.511959 ACGTTACAGCTTCAGATCAGATATA 57.488 36.000 0.00 0.00 0.00 0.86
625 649 6.398234 ACGTTACAGCTTCAGATCAGATAT 57.602 37.500 0.00 0.00 0.00 1.63
626 650 5.836821 ACGTTACAGCTTCAGATCAGATA 57.163 39.130 0.00 0.00 0.00 1.98
627 651 4.727507 ACGTTACAGCTTCAGATCAGAT 57.272 40.909 0.00 0.00 0.00 2.90
628 652 4.521130 AACGTTACAGCTTCAGATCAGA 57.479 40.909 0.00 0.00 0.00 3.27
629 653 5.406780 AGAAAACGTTACAGCTTCAGATCAG 59.593 40.000 0.00 0.00 0.00 2.90
630 654 5.297547 AGAAAACGTTACAGCTTCAGATCA 58.702 37.500 0.00 0.00 0.00 2.92
631 655 5.405571 TGAGAAAACGTTACAGCTTCAGATC 59.594 40.000 0.00 0.00 0.00 2.75
632 656 5.297547 TGAGAAAACGTTACAGCTTCAGAT 58.702 37.500 0.00 0.00 0.00 2.90
633 657 4.689071 TGAGAAAACGTTACAGCTTCAGA 58.311 39.130 0.00 0.00 0.00 3.27
634 658 5.198274 GTTGAGAAAACGTTACAGCTTCAG 58.802 41.667 0.00 0.00 0.00 3.02
635 659 4.034742 GGTTGAGAAAACGTTACAGCTTCA 59.965 41.667 0.00 0.00 0.00 3.02
636 660 4.524749 GGTTGAGAAAACGTTACAGCTTC 58.475 43.478 0.00 0.86 0.00 3.86
637 661 3.001939 CGGTTGAGAAAACGTTACAGCTT 59.998 43.478 0.00 0.00 0.00 3.74
638 662 2.542595 CGGTTGAGAAAACGTTACAGCT 59.457 45.455 0.00 0.00 0.00 4.24
639 663 2.286025 ACGGTTGAGAAAACGTTACAGC 59.714 45.455 0.00 2.41 35.90 4.40
640 664 4.525411 AACGGTTGAGAAAACGTTACAG 57.475 40.909 12.16 0.00 46.25 2.74
641 665 7.344222 ACCTTAACGGTTGAGAAAACGTTACA 61.344 38.462 18.08 10.49 46.37 2.41
642 666 5.006649 ACCTTAACGGTTGAGAAAACGTTAC 59.993 40.000 18.08 0.00 46.37 2.50
643 667 5.006552 CACCTTAACGGTTGAGAAAACGTTA 59.993 40.000 15.31 15.31 46.37 3.18
644 668 3.940852 ACCTTAACGGTTGAGAAAACGTT 59.059 39.130 17.16 17.16 46.37 3.99
645 669 3.310501 CACCTTAACGGTTGAGAAAACGT 59.689 43.478 13.62 0.00 46.37 3.99
646 670 3.847105 GCACCTTAACGGTTGAGAAAACG 60.847 47.826 13.62 0.00 46.37 3.60
647 671 3.065648 TGCACCTTAACGGTTGAGAAAAC 59.934 43.478 13.62 2.15 46.37 2.43
648 672 3.065648 GTGCACCTTAACGGTTGAGAAAA 59.934 43.478 13.62 0.00 46.37 2.29
649 673 2.614983 GTGCACCTTAACGGTTGAGAAA 59.385 45.455 13.62 0.00 46.37 2.52
650 674 2.215196 GTGCACCTTAACGGTTGAGAA 58.785 47.619 13.62 0.00 46.37 2.87
651 675 1.139256 TGTGCACCTTAACGGTTGAGA 59.861 47.619 15.69 0.00 46.37 3.27
652 676 1.263217 GTGTGCACCTTAACGGTTGAG 59.737 52.381 15.69 4.55 46.37 3.02
653 677 1.134340 AGTGTGCACCTTAACGGTTGA 60.134 47.619 15.69 0.00 46.37 3.18
654 678 1.305201 AGTGTGCACCTTAACGGTTG 58.695 50.000 15.69 0.00 46.37 3.77
655 679 1.944709 GAAGTGTGCACCTTAACGGTT 59.055 47.619 15.69 0.00 46.37 4.44
657 681 0.872388 GGAAGTGTGCACCTTAACGG 59.128 55.000 15.69 0.00 39.35 4.44
658 682 0.872388 GGGAAGTGTGCACCTTAACG 59.128 55.000 15.69 0.00 0.00 3.18
659 683 0.872388 CGGGAAGTGTGCACCTTAAC 59.128 55.000 15.69 5.58 0.00 2.01
722 746 5.632764 CCGTTACAGCTTCAGATCAGATATG 59.367 44.000 0.00 0.00 0.00 1.78
755 779 2.419436 CGGGTAGTGTGCACCATAATGA 60.419 50.000 15.69 0.00 37.84 2.57
761 785 1.687297 TTGTCGGGTAGTGTGCACCA 61.687 55.000 15.69 0.00 37.84 4.17
772 796 4.400251 TCGAAGACATACTAATTGTCGGGT 59.600 41.667 0.00 0.00 46.39 5.28
819 843 1.616865 CATTTGGCAGGCCCTATGATG 59.383 52.381 8.02 0.00 31.82 3.07
820 844 1.481802 CCATTTGGCAGGCCCTATGAT 60.482 52.381 18.05 0.90 31.82 2.45
904 930 2.948979 ACGAAGCTGTTTGGTTTGATGA 59.051 40.909 0.00 0.00 39.30 2.92
1015 1042 1.726791 GCACTTATGTCTGTGTCCACG 59.273 52.381 0.00 0.00 36.63 4.94
1114 1149 7.646314 AGACAACTCAGACATGAAAGAAATTG 58.354 34.615 0.00 4.39 34.23 2.32
1144 1179 5.920840 GCTTTCTAAATTGAAACCCAGTCAC 59.079 40.000 0.00 0.00 33.11 3.67
1171 1206 5.627499 TGCAAGATAGGTTAGCAAACTTG 57.373 39.130 0.00 0.00 35.81 3.16
1206 1241 2.030805 ACACGTCTACACCTTACGGAAC 60.031 50.000 0.00 0.00 40.81 3.62
1219 1254 3.740832 CACTCATGCTCAAAACACGTCTA 59.259 43.478 0.00 0.00 0.00 2.59
1223 1258 1.664016 GCCACTCATGCTCAAAACACG 60.664 52.381 0.00 0.00 0.00 4.49
1243 1278 5.296035 TCTGCTCATGAATATTGAGTGCTTG 59.704 40.000 0.00 0.00 42.12 4.01
1246 1281 4.815308 ACTCTGCTCATGAATATTGAGTGC 59.185 41.667 12.54 4.03 42.12 4.40
1274 1311 0.036010 ATGCAGACCCTCGAAACCAG 60.036 55.000 0.00 0.00 0.00 4.00
1305 1348 1.963515 AGAAATTGTCACCAACCCAGC 59.036 47.619 0.00 0.00 32.26 4.85
1306 1349 4.099266 TGAAAGAAATTGTCACCAACCCAG 59.901 41.667 0.00 0.00 32.26 4.45
1311 1354 6.320926 TCAGACATGAAAGAAATTGTCACCAA 59.679 34.615 0.00 0.00 40.69 3.67
1313 1356 6.016777 ACTCAGACATGAAAGAAATTGTCACC 60.017 38.462 0.00 0.00 40.69 4.02
1349 1540 5.048713 AGCTTTCTAAATTGAAACCCAGTCG 60.049 40.000 0.00 0.00 33.11 4.18
1375 1566 4.475051 TGCGGATAGGTTAGCAAACTTA 57.525 40.909 0.00 0.00 36.60 2.24
1393 1584 5.643348 TGCACCTTATGGAATTAGATATGCG 59.357 40.000 0.81 0.00 32.55 4.73
1408 1606 4.082571 GCTCAAAACACATCTGCACCTTAT 60.083 41.667 0.00 0.00 0.00 1.73
1433 1631 5.621197 TGAATATTGTGTGTTGCCACTAC 57.379 39.130 0.00 0.00 42.34 2.73
1434 1632 5.942826 TCATGAATATTGTGTGTTGCCACTA 59.057 36.000 0.00 0.00 42.34 2.74
1443 1641 5.583457 TCACTCTGCTCATGAATATTGTGTG 59.417 40.000 13.67 10.97 0.00 3.82
1444 1642 5.737860 TCACTCTGCTCATGAATATTGTGT 58.262 37.500 13.67 2.22 0.00 3.72
1445 1643 6.862711 ATCACTCTGCTCATGAATATTGTG 57.137 37.500 0.00 4.37 0.00 3.33
1446 1644 7.226918 CAGAATCACTCTGCTCATGAATATTGT 59.773 37.037 0.00 0.00 45.11 2.71
1482 1681 3.744942 CAGCGCAACTAATAGATGCAGAT 59.255 43.478 19.88 10.23 43.20 2.90
1549 1750 8.700973 ACTTAAAGCTTTCTAAATTGAAACCCA 58.299 29.630 16.57 0.00 33.11 4.51
1614 1815 1.337703 GCTCAAAACACATCTGCACCA 59.662 47.619 0.00 0.00 0.00 4.17
1683 1884 3.741075 CGCAACTAATAGATGCAGACCCA 60.741 47.826 19.88 0.00 43.20 4.51
1740 1943 9.793252 AAGACAATATTTTACTTAGCAATGCAG 57.207 29.630 8.35 0.00 0.00 4.41
1795 1999 4.162040 ACATTTAGGAGGGAAGCAGATG 57.838 45.455 0.00 0.00 0.00 2.90
1798 2002 6.681368 GCAATAAACATTTAGGAGGGAAGCAG 60.681 42.308 0.00 0.00 0.00 4.24
1800 2004 5.360999 AGCAATAAACATTTAGGAGGGAAGC 59.639 40.000 0.00 0.00 0.00 3.86
1801 2005 7.410120 AAGCAATAAACATTTAGGAGGGAAG 57.590 36.000 0.00 0.00 0.00 3.46
1851 2071 4.770010 CCCAAAGCCCTATGAAAACAACTA 59.230 41.667 0.00 0.00 0.00 2.24
1890 2110 6.591834 CCAACCTGACAAAACAAAACACAATA 59.408 34.615 0.00 0.00 0.00 1.90
2112 2338 3.458189 AGTTCTTCTCAACCTTCACGTG 58.542 45.455 9.94 9.94 0.00 4.49
2126 2352 5.343593 CACAGTTGTCGACATAGAGTTCTTC 59.656 44.000 20.80 0.76 0.00 2.87
2137 2363 2.425668 TCAGACTTCACAGTTGTCGACA 59.574 45.455 15.76 15.76 36.01 4.35
2144 2370 5.357878 TGCATTCTTTTCAGACTTCACAGTT 59.642 36.000 0.00 0.00 31.22 3.16
2154 2380 5.589855 TCTTCACAGTTGCATTCTTTTCAGA 59.410 36.000 0.00 0.00 0.00 3.27
2204 2430 2.343843 CGCAGTCTTCTCAATCTTCACG 59.656 50.000 0.00 0.00 0.00 4.35
2255 2511 5.531287 GCTAACTTCCTTTGAAACCTTCTCA 59.469 40.000 0.00 0.00 0.00 3.27
2396 2652 2.567985 TCCTTGGAAACCTTGACGAAC 58.432 47.619 0.00 0.00 0.00 3.95
2453 2709 2.726821 CATGCATTTACCTGGTCCAGT 58.273 47.619 17.85 8.44 0.00 4.00
2579 2835 1.106944 CAGGGTTGTTGTCCGCCTTT 61.107 55.000 0.00 0.00 0.00 3.11
2651 2907 1.363807 CATCTCGTCCGCTGGCATA 59.636 57.895 0.00 0.00 0.00 3.14
2657 2913 3.893763 CTCGCCATCTCGTCCGCT 61.894 66.667 0.00 0.00 0.00 5.52
2780 3036 4.030452 GTCTTGCGCTGCCCACAC 62.030 66.667 9.73 0.00 0.00 3.82
2828 3084 2.579787 GTCGTCATGGGCTCGTCG 60.580 66.667 0.00 0.00 0.00 5.12
2837 3093 3.613975 CGTCACAAACGTCGTCATG 57.386 52.632 0.00 3.88 46.42 3.07
2896 3152 3.611674 TCCGACAAGTCCGCAGCA 61.612 61.111 0.00 0.00 0.00 4.41
2898 3154 2.432628 GGTCCGACAAGTCCGCAG 60.433 66.667 0.00 0.00 0.00 5.18
2899 3155 4.351938 CGGTCCGACAAGTCCGCA 62.352 66.667 4.91 0.00 36.68 5.69
2901 3157 2.594119 CTAGCGGTCCGACAAGTCCG 62.594 65.000 17.49 0.00 44.86 4.79
2903 3159 1.516603 GCTAGCGGTCCGACAAGTC 60.517 63.158 17.49 0.00 0.00 3.01
2904 3160 2.572284 GCTAGCGGTCCGACAAGT 59.428 61.111 17.49 0.00 0.00 3.16
2905 3161 2.579787 CGCTAGCGGTCCGACAAG 60.580 66.667 29.29 9.46 35.56 3.16
2906 3162 4.789075 GCGCTAGCGGTCCGACAA 62.789 66.667 35.86 0.00 40.19 3.18
2916 3172 0.237498 AACAGGAAAAACGCGCTAGC 59.763 50.000 5.73 4.06 40.74 3.42
2918 3174 2.477375 CACTAACAGGAAAAACGCGCTA 59.523 45.455 5.73 0.00 0.00 4.26
2920 3176 1.262151 TCACTAACAGGAAAAACGCGC 59.738 47.619 5.73 0.00 0.00 6.86
2921 3177 3.479006 CATCACTAACAGGAAAAACGCG 58.521 45.455 3.53 3.53 0.00 6.01
2938 3200 1.067565 GTCAAGACTGAGACGGCATCA 60.068 52.381 0.00 0.00 30.14 3.07
2947 3209 3.306364 CCAACCTACCTGTCAAGACTGAG 60.306 52.174 8.44 2.46 32.81 3.35
2966 3228 1.751924 CGAAAAACAGGACCAACCCAA 59.248 47.619 0.00 0.00 40.05 4.12
2967 3229 1.341187 ACGAAAAACAGGACCAACCCA 60.341 47.619 0.00 0.00 40.05 4.51
2968 3230 1.395635 ACGAAAAACAGGACCAACCC 58.604 50.000 0.00 0.00 40.05 4.11
2969 3231 3.610821 GCATACGAAAAACAGGACCAACC 60.611 47.826 0.00 0.00 39.35 3.77
2970 3232 3.252458 AGCATACGAAAAACAGGACCAAC 59.748 43.478 0.00 0.00 0.00 3.77
2971 3233 3.482436 AGCATACGAAAAACAGGACCAA 58.518 40.909 0.00 0.00 0.00 3.67
2978 3240 5.155278 TCCTCCTAAGCATACGAAAAACA 57.845 39.130 0.00 0.00 0.00 2.83
2979 3241 6.985059 AGTATCCTCCTAAGCATACGAAAAAC 59.015 38.462 0.00 0.00 0.00 2.43
3092 3361 6.403866 AAAAGTTACATCAGGCAACATGAA 57.596 33.333 0.00 0.00 41.41 2.57
3131 3401 9.166173 TGTGAGTGTATATACGTAACTAACACT 57.834 33.333 24.32 24.32 46.30 3.55
3181 3451 4.546829 AGCACCGTCTGTTCCTAAATAA 57.453 40.909 0.00 0.00 0.00 1.40
3182 3452 4.222145 AGAAGCACCGTCTGTTCCTAAATA 59.778 41.667 0.00 0.00 0.00 1.40
3184 3454 2.367567 AGAAGCACCGTCTGTTCCTAAA 59.632 45.455 0.00 0.00 0.00 1.85
3185 3455 1.968493 AGAAGCACCGTCTGTTCCTAA 59.032 47.619 0.00 0.00 0.00 2.69
3186 3456 1.544691 GAGAAGCACCGTCTGTTCCTA 59.455 52.381 0.00 0.00 0.00 2.94
3193 3463 1.581954 CACGAGAGAAGCACCGTCT 59.418 57.895 0.00 0.00 32.50 4.18
3194 3464 2.089349 GCACGAGAGAAGCACCGTC 61.089 63.158 0.00 0.00 36.13 4.79
3201 3471 1.747924 TCTCCATCTGCACGAGAGAAG 59.252 52.381 0.00 0.00 32.80 2.85
3203 3473 1.098869 GTCTCCATCTGCACGAGAGA 58.901 55.000 0.00 0.00 33.43 3.10
3209 3479 1.950828 CCTCATGTCTCCATCTGCAC 58.049 55.000 0.00 0.00 0.00 4.57
3212 3482 0.835276 TGGCCTCATGTCTCCATCTG 59.165 55.000 3.32 0.00 0.00 2.90
3219 3489 0.689080 ACTCCGATGGCCTCATGTCT 60.689 55.000 3.32 0.00 32.98 3.41
3229 3499 0.826715 ACATCACTGGACTCCGATGG 59.173 55.000 13.20 0.00 39.64 3.51
3230 3500 2.094026 TCAACATCACTGGACTCCGATG 60.094 50.000 8.97 8.97 40.84 3.84
3239 3509 6.808008 AATCTAACAACTCAACATCACTGG 57.192 37.500 0.00 0.00 0.00 4.00
3278 3548 1.376424 AACCAGCATCACAGCGGAG 60.376 57.895 0.00 0.00 40.15 4.63
3279 3549 1.672030 CAACCAGCATCACAGCGGA 60.672 57.895 0.00 0.00 40.15 5.54
3280 3550 1.028330 ATCAACCAGCATCACAGCGG 61.028 55.000 0.00 0.00 40.15 5.52
3281 3551 0.376152 GATCAACCAGCATCACAGCG 59.624 55.000 0.00 0.00 40.15 5.18
3282 3552 0.376152 CGATCAACCAGCATCACAGC 59.624 55.000 0.00 0.00 0.00 4.40
3283 3553 0.376152 GCGATCAACCAGCATCACAG 59.624 55.000 0.00 0.00 0.00 3.66
3284 3554 0.321475 TGCGATCAACCAGCATCACA 60.321 50.000 0.00 0.00 35.81 3.58
3285 3555 2.470156 TGCGATCAACCAGCATCAC 58.530 52.632 0.00 0.00 35.81 3.06
3296 3566 5.451937 CCTTAGGTTCTTCACTATGCGATCA 60.452 44.000 0.00 0.00 0.00 2.92
3298 3568 4.649674 TCCTTAGGTTCTTCACTATGCGAT 59.350 41.667 0.00 0.00 0.00 4.58
3312 3582 4.324331 GGCACCAGAATAACTCCTTAGGTT 60.324 45.833 0.00 0.00 0.00 3.50
3316 3586 5.253330 CAAAGGCACCAGAATAACTCCTTA 58.747 41.667 0.00 0.00 31.60 2.69
3335 3605 1.691196 TGCACCCACTTCTTCCAAAG 58.309 50.000 0.00 0.00 0.00 2.77
3392 3672 7.675062 AGGTGCATTAGGTAGAAGAAGATATG 58.325 38.462 0.00 0.00 0.00 1.78
3432 3715 2.124278 GAAAGGTCATCCCCGGCC 60.124 66.667 0.00 0.00 0.00 6.13
3451 3734 3.450457 ACTTTCAGTCCATGTGGCAAAAA 59.550 39.130 0.00 0.00 34.44 1.94
3460 3777 4.136796 TGGTTTCAGACTTTCAGTCCATG 58.863 43.478 0.09 0.00 46.18 3.66
3472 3789 7.097192 TCAGACTTGTACATATGGTTTCAGAC 58.903 38.462 7.80 0.00 0.00 3.51
3506 3823 6.635030 ACATATACTGATACTGCAAGACGA 57.365 37.500 0.00 0.00 37.43 4.20
3508 3825 7.923344 ACAGAACATATACTGATACTGCAAGAC 59.077 37.037 0.00 0.00 36.05 3.01
3513 3830 6.363626 CGGAACAGAACATATACTGATACTGC 59.636 42.308 0.00 0.00 37.54 4.40
3523 3840 4.873827 GGCTTTGACGGAACAGAACATATA 59.126 41.667 0.00 0.00 0.00 0.86
3528 3845 1.594331 AGGCTTTGACGGAACAGAAC 58.406 50.000 0.00 0.00 0.00 3.01
3530 3847 1.542547 GGAAGGCTTTGACGGAACAGA 60.543 52.381 0.00 0.00 0.00 3.41
3531 3848 0.875059 GGAAGGCTTTGACGGAACAG 59.125 55.000 0.00 0.00 0.00 3.16
3532 3849 0.536460 GGGAAGGCTTTGACGGAACA 60.536 55.000 0.00 0.00 0.00 3.18
3533 3850 0.536460 TGGGAAGGCTTTGACGGAAC 60.536 55.000 0.00 0.00 0.00 3.62
3534 3851 0.404040 ATGGGAAGGCTTTGACGGAA 59.596 50.000 0.00 0.00 0.00 4.30
3535 3852 0.322456 CATGGGAAGGCTTTGACGGA 60.322 55.000 0.00 0.00 0.00 4.69
3536 3853 1.937546 GCATGGGAAGGCTTTGACGG 61.938 60.000 0.00 0.00 0.00 4.79
3537 3854 1.508088 GCATGGGAAGGCTTTGACG 59.492 57.895 0.00 0.00 0.00 4.35
3538 3855 0.613012 AGGCATGGGAAGGCTTTGAC 60.613 55.000 0.00 0.00 38.98 3.18
3539 3856 0.323725 GAGGCATGGGAAGGCTTTGA 60.324 55.000 0.00 0.00 42.47 2.69
3540 3857 1.325476 GGAGGCATGGGAAGGCTTTG 61.325 60.000 0.00 0.00 42.47 2.77
3541 3858 1.000866 GGAGGCATGGGAAGGCTTT 59.999 57.895 0.00 0.00 42.47 3.51
3542 3859 1.587522 ATGGAGGCATGGGAAGGCTT 61.588 55.000 0.00 0.00 42.47 4.35
3543 3860 0.698886 TATGGAGGCATGGGAAGGCT 60.699 55.000 0.00 0.00 45.38 4.58
3544 3861 0.407139 ATATGGAGGCATGGGAAGGC 59.593 55.000 0.00 0.00 0.00 4.35
3545 3862 1.426598 ACATATGGAGGCATGGGAAGG 59.573 52.381 7.80 0.00 0.00 3.46
3546 3863 2.965671 ACATATGGAGGCATGGGAAG 57.034 50.000 7.80 0.00 0.00 3.46
3547 3864 2.785269 AGAACATATGGAGGCATGGGAA 59.215 45.455 7.80 0.00 0.00 3.97
3548 3865 2.373169 GAGAACATATGGAGGCATGGGA 59.627 50.000 7.80 0.00 0.00 4.37
3549 3866 2.374504 AGAGAACATATGGAGGCATGGG 59.625 50.000 7.80 0.00 0.00 4.00
3550 3867 3.784511 AGAGAACATATGGAGGCATGG 57.215 47.619 7.80 0.00 0.00 3.66
3551 3868 4.970711 AGAAGAGAACATATGGAGGCATG 58.029 43.478 7.80 0.00 0.00 4.06
3552 3869 5.012561 GGTAGAAGAGAACATATGGAGGCAT 59.987 44.000 7.80 0.00 0.00 4.40
3553 3870 4.345257 GGTAGAAGAGAACATATGGAGGCA 59.655 45.833 7.80 0.00 0.00 4.75
3554 3871 4.345257 TGGTAGAAGAGAACATATGGAGGC 59.655 45.833 7.80 0.00 0.00 4.70
3555 3872 6.485830 TTGGTAGAAGAGAACATATGGAGG 57.514 41.667 7.80 0.00 0.00 4.30
3556 3873 6.481644 GCTTTGGTAGAAGAGAACATATGGAG 59.518 42.308 7.80 0.00 0.00 3.86
3557 3874 6.349300 GCTTTGGTAGAAGAGAACATATGGA 58.651 40.000 7.80 0.00 0.00 3.41
3558 3875 5.529060 GGCTTTGGTAGAAGAGAACATATGG 59.471 44.000 7.80 0.00 0.00 2.74
3559 3876 6.352516 AGGCTTTGGTAGAAGAGAACATATG 58.647 40.000 0.00 0.00 0.00 1.78
3560 3877 6.567602 AGGCTTTGGTAGAAGAGAACATAT 57.432 37.500 0.00 0.00 0.00 1.78
3561 3878 6.374417 AAGGCTTTGGTAGAAGAGAACATA 57.626 37.500 0.00 0.00 0.00 2.29
3562 3879 4.917906 AGGCTTTGGTAGAAGAGAACAT 57.082 40.909 0.00 0.00 0.00 2.71
3563 3880 4.706842 AAGGCTTTGGTAGAAGAGAACA 57.293 40.909 0.00 0.00 0.00 3.18
3564 3881 4.456222 GGAAAGGCTTTGGTAGAAGAGAAC 59.544 45.833 18.79 0.00 0.00 3.01
3565 3882 4.506802 GGGAAAGGCTTTGGTAGAAGAGAA 60.507 45.833 18.79 0.00 0.00 2.87
3566 3883 3.009143 GGGAAAGGCTTTGGTAGAAGAGA 59.991 47.826 18.79 0.00 0.00 3.10
3567 3884 3.244911 TGGGAAAGGCTTTGGTAGAAGAG 60.245 47.826 18.79 0.00 0.00 2.85
3571 3888 2.883888 GCATGGGAAAGGCTTTGGTAGA 60.884 50.000 18.79 0.00 31.20 2.59
3585 3902 2.555633 CCAATAGGGAGGCATGGGA 58.444 57.895 0.00 0.00 40.01 4.37
3626 3943 3.343617 GTTGAAGTGGCAACCTAGCATA 58.656 45.455 0.00 0.00 41.69 3.14
3678 4007 1.547372 GCAATCCCTGTGTGCAAGAAT 59.453 47.619 0.00 0.00 38.19 2.40
3679 4008 0.961019 GCAATCCCTGTGTGCAAGAA 59.039 50.000 0.00 0.00 38.19 2.52
3692 4021 4.458295 CAGGACTTGGATATGATGCAATCC 59.542 45.833 8.02 8.02 44.73 3.01
3734 4063 3.511540 TCCCGGATCATATGACTAAGCAG 59.488 47.826 7.78 0.00 0.00 4.24
3773 4105 4.435518 CGACGTTATGCATAAGCTGTTGTT 60.436 41.667 19.41 0.00 42.74 2.83
3795 4127 5.995565 TTAATCCCATACTACCAGATCCG 57.004 43.478 0.00 0.00 0.00 4.18
3864 4196 9.226606 TCCATCAAGTTTCTTCGTATAAAACAT 57.773 29.630 0.00 0.00 35.77 2.71
3865 4197 8.610248 TCCATCAAGTTTCTTCGTATAAAACA 57.390 30.769 0.00 0.00 35.77 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.