>input_sequence_41605
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGAGTTGTTTCCT
TCGTGGACACAGACATAAGTGCCATGGGGCATTGAGCGTAACAAACAATAATTCTGAAACAGTTTCTAGGAGTCTAGGC-
-------CTCCTAAAGGGGCTGCAGTGACAATTTCTTTCATGTCTGAGTTGTCTTTCAGTGACTGGGTTTCAATTTAGAA
AGCTTCAAGTTTGCTAACCTATCTTGCAAAAGCATATCTAGTTCCGTAAGGTGTAGACGTGTTTTGAGCATGAGTGGCAA
GCACTCAATATTCATGAGCAG--AGTGATTCTGGTTTCGAGGGTCTGCATCTA------TTAGTTGCGCTGGGTTGG---
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGACAATTTCTTTCA
TGTCTGAGTTGTCTTTCAGCGACTGGGTTTCAATTTAGAAAGCTTTAAGTTTGCTAACCTATCC-------GCATATCTA
ATTCCATAAGGTGCAGATGTGTTTTGAGCAGTAGTGGCAACACA-CAATATTCATGAGCAGAGTGATTCTGGTTTCGAGG
ATCTGCATCTATTAGTTGCGCTGGGTTGGTGACAATTTCTTTCATGTC--TGAGTTGCCTTTCAGTGACTGGGTTTCAAT
TTAGAAAGCTTTAAGTTTGCTAACCTATCTAGCAAAAGCATATCTAATTCCGTATGGTGCAGATGTGTTTTGAGCATGAG
TGGCAAACACTCAATATTCATGAGCAGAGTGATTCTGGTTTCGTGGGTCTGCATCTATTAGT--TGCGCTGGGTTGGTGG
TTTGTGAAACATCTTTTGTTAACTGCATTGCTAAGTAAAATATTGTC-TTTTTACTGAAGCTTAGTTAGTCAAGTTAACA
TCTGC----------------TTCCCTCCTAAATGTTTATTGCTTATTTCATTCAGCTACTTCCCCCATGTAGTTGTTTT
CATAGGGCTTTGGGAACTTGCAACTTACATATTGTGTTTTGTTTTGTCAGGTTGGCAAACGTCTTCGGTACCTGACGAAG
CACCCTAACTCAGACATACAGGCGGTGGCTGCAGACCTTTTTGGGTACTGGAAGAAGGTTGTTATTGAAGAGACAGGAAA
GAAAAACGGCACACCAGCGAATGGAAAATCAGATAACTCTGCAGCTAAGGCTGAGAAACCTCAGCCCATGAAGGTTGAAA
AGAAGTCA------GCGCACGTGAAGGTTGAGAAGAACTCTATGTCGACAACTGTGAAGTCTGAAAAGAATGCAACTGTG
AAGACTGAAAAGAATTCTATGTCGGCAAGCGTG---------------------------AAGATTGAGAAGACTGCGAA
TAATGATTCCAAAGTCCAA---GTTAAGGTTGAGAAGGTTTCAAAGGAAGTTAGCAGAACATCTGAAACAAAGAAACCAT
CTTCTGTTCCAAATGGTCCCCCAAAGCTGACATCCCTCGTCAGATGCAACGATGCTGCTCGAGATAAATACAGGGAGCTT
CTTGTTGACGCGTTCGTCAAGGTTTCCAAGGAAACTAGCGAGGATGACAGAGAGGAAATAAGAGATCTACTGGACCAGGT
AAATGCATGCGACCCATATAGAGTTGCTGTGACAGTGGAGTCGGCCTTGTTTGAGAGGATCGGGCGTTCCACTGGGACCC
ACAAGGTGAAATACAGGTCGATACTGTTCAACCTAAAGGCGGACAACAACCCTGACTTCCGGCGGAGGGTGCTGCTGGGC
GAGGTGAGGCCCGGGAGCCTGGTGGATATGCCAGCGGACGAGATGGCGAGCGACGCTCGGAAGCTGGAGAACCAGCAGAT
CAAGGAGAAGGCCCTGTTTGACTGCGAGCGCGCGTCGGCGCCCAAGGCGTCGACGGACCAGTTCAAGTGCGGGCGGTGTG
GGCAGCGCAAGACGACCTACTACCAGCTGCAGACGCGGAGTGCCGACGAGCCCATGACGACGTTTGTGACGTGCGTCAAC
TGCAACAACCACTGGAAGTTCTGCTGA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr5A_1_TraesCS5A01G469000
AAACACTGTAAATTCATGGACTGGTACT-GATTGAGAGTGTTCTGATCCGCCTATGATGG-ACAGTTTTACAATTTGGCT
GGAGAACATGTGATAACTAATTTATCTATAACATGAAACCTATGTTTTGAATTTCACAAAATAGGAACAAAGACAATGAA
TTTGCGGTTGACTGGTCTTGCACCAGCATGTAATCAATGGCTCTTCCTCTGGATTTCATGGATTTTCGGCATTCTA--CC
CATCTTCTGCTAGCAAGTC----------ATAACTTTGCCTTGATGAATGGACTCTATTTCTGCCAGTTCCCTAAAAAAA
TCTGCCGATCTTTGGTTCATGTGTTTATGTG-----AAAAAGTTGATTTGGTAAGTGAAGCGTGCAGAACGTGAGCAGTT
TAGATGAAAGAAATATTCTATATAATTTGGGCAAGTCATAACTTGCATGATCTTCAAGTTGTCGTATTTGACATGTCTTG
CCATAAAAGCTAGCTTCCTGAGTTA---CTGAACCAATATTTATTGTGCT-CTGTTTTGCCATTTTGTGTATATCTGATC
TGAAGCTGTAACGGTTTCGCGACTGTTAAGGTGCACACTTACCGACAATTAGTATGCCATATTGTGCTCCCGTTTTGCCA
TTTTGTGTATATCTGATCTGAAGCTGTAACGTTTTCTCAACCGTTAAGGTGCACACTTCCCGACAATTAGTATGTCATAT
TGTGCTCCTGTTTTGCCATTTTGTGCATATCTGATCTGAAGCTGTAACGGTTTCTCGATCATTATGGTGCACACTACCCG
ACAATTAGTATGTCTTCGAGCCAGCCACTTACACCAGACTTTCATCATAGGGCCTGCCAAATGGCAACTCCAGAAGTCGA
TAAAGCC-G-TTTTTTTGGCTTGCCTGCATATTGGCAAGTCAATTTTTGTCATCAAACCAAACAGCTTCGTAGTCTT-AA
TGTTTACTTTTAGTTTTAACACCTTAATGATTTATAAAACTAGGTAAGGTCCTCTGTAATTGGGATATGAGTTGTTTCCT
TCGTGGACACAGACATAAGTGCCATGGGGCATTGAGCGTAACAAACAATAATTCTGAAACAGTTTCTAGGAGTCTAGGC-
-------CTCCTAAAGGGGCTGCAGTGACAATTTCTTTCATGTCTGAGTTGTCTTTCAGTGACTGGGTTTCAATTTAGAA
AGCTTCAAGTTTGCTAACCTATCTTGCAAAAGCATATCTAGTTCCGTAAGGTGTAGACGTGTTTTGAGCATGAGTGGCAA
GCACTCAATATTCATGAGCAG--AGTGATTCTGGTTTCGAGGGTCTGCATCTA------TTAGTTGCGCTGGGTTGG---
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGACAATTTCTTTCA
TGTCTGAGTTGTCTTTCAGCGACTGGGTTTCAATTTAGAAAGCTTTAAGTTTGCTAACCTATCC-------GCATATCTA
ATTCCATAAGGTGCAGATGTGTTTTGAGCAGTAGTGGCAACACA-CAATATTCATGAGCAGAGTGATTCTGGTTTCGAGG
ATCTGCATCTATTAGTTGCGCTGGGTTGGTGACAATTTCTTTCATGTC--TGAGTTGCCTTTCAGTGACTGGGTTTCAAT
TTAGAAAGCTTTAAGTTTGCTAACCTATCTAGCAAAAGCATATCTAATTCCGTATGGTGCAGATGTGTTTTGAGCATGAG
TGGCAAACACTCAATATTCATGAGCAGAGTGATTCTGGTTTCGTGGGTCTGCATCTATTAGT--TGCGCTGGGTTGGTGG
TTTGTGAAACATCTTTTGTTAACTGCATTGCTAAGTAAAATATTGTC-TTTTTACTGAAGCTTAGTTAGTCAAGTTAACA
TCTGC----------------TTCCCTCCTAAATGTTTATTGCTTATTTCATTCAGCTACTTCCCCCATGTAGTTGTTTT
CATAGGGCTTTGGGAACTTGCAACTTACATATTGTGTTTTGTTTTGTCAGGTTGGCAAACGTCTTCGGTACCTGACGAAG
CACCCTAACTCAGACATACAGGCGGTGGCTGCAGACCTTTTTGGGTACTGGAAGAAGGTTGTTATTGAAGAGACAGGAAA
GAAAAACGGCACACCAGCGAATGGAAAATCAGATAACTCTGCAGCTAAGGCTGAGAAACCTCAGCCCATGAAGGTTGAAA
AGAAGTCA------GCGCACGTGAAGGTTGAGAAGAACTCTATGTCGACAACTGTGAAGTCTGAAAAGAATGCAACTGTG
AAGACTGAAAAGAATTCTATGTCGGCAAGCGTG---------------------------AAGATTGAGAAGACTGCGAA
TAATGATTCCAAAGTCCAA---GTTAAGGTTGAGAAGGTTTCAAAGGAAGTTAGCAGAACATCTGAAACAAAGAAACCAT
CTTCTGTTCCAAATGGTCCCCCAAAGCTGACATCCCTCGTCAGATGCAACGATGCTGCTCGAGATAAATACAGGGAGCTT
CTTGTTGACGCGTTCGTCAAGGTTTCCAAGGAAACTAGCGAGGATGACAGAGAGGAAATAAGAGATCTACTGGACCAGGT
AAATGCATGCGACCCATATAGAGTTGCTGTGACAGTGGAGTCGGCCTTGTTTGAGAGGATCGGGCGTTCCACTGGGACCC
ACAAGGTGAAATACAGGTCGATACTGTTCAACCTAAAGGCGGACAACAACCCTGACTTCCGGCGGAGGGTGCTGCTGGGC
GAGGTGAGGCCCGGGAGCCTGGTGGATATGCCAGCGGACGAGATGGCGAGCGACGCTCGGAAGCTGGAGAACCAGCAGAT
CAAGGAGAAGGCCCTGTTTGACTGCGAGCGCGCGTCGGCGCCCAAGGCGTCGACGGACCAGTTCAAGTGCGGGCGGTGTG
GGCAGCGCAAGACGACCTACTACCAGCTGCAGACGCGGAGTGCCGACGAGCCCATGACGACGTTTGTGACGTGCGTCAAC
TGCAACAACCACTGGAAGTTCTGCTGAGCGCTGCTGCGGACTTGTCGGACCGCTAGCGC------GTTTTTCCTGTTAGT
GATGCCGTCTCAGTCTTGACAGGTAGGTTGGGTTGGTCCTGTTTTTCGTATGCTTAGGAGGATACTGTTTTCGTCTGTTG
TTTTTTCTGTGTTTGG---GAACCCTGATTTATTCAGATTGTGTACTAGTTGACCGCATAAATGTTGT----TGGATGAA
TTCATGTTGCCTGATGTAACTTTTATGAA-GAGAATGTTCAGTGTTAGTTACGTATATACACTCACATAGTGGTACTGTG
ATAGTAATGATTATTTAGGAACAGACGGTGCTTCTCTCGTGCAGATGGAGACATGAGGCCATCGGAGTCCAGTGATGTTG
AGTTGTTAGATTATACATACAGGCCTGCTCCGCTGTGATGCTGGTTGATCGCATAGTGAAGAACCTAAGGAGTTATTCTG
GTGCCTTTGGA----------AGAAGTGGGTGCAAGGGATGGATCTCTTCTCGAGCCTTATTTCTCCTATTCATATCTTC
TTCT---ACCTAATGCACCTTCTTCTCGACGTCCGGCCGGGGATGACCTTTCTTT-------------------------
---------TTTGCCACATGGACTGAAAGTCTGAAACCATATGTACAAGTCTGAAGTTCCTTTCGTCTTGCAGTATCAGT
ATATGTTCTGTTCCGTCAAAGCCTTCCCATGCCTCCATATGTTCTCTTCTACCAAAGCCTTTCCCATGCCTCCCTATTGG
CTGGATGCTTCATTTCATTTTTTATGCTAGGTTGCCACTTCAACTTGTGCCA------------CTTCTTACGTATTTTT
TTTTATATTCTTGCACACAGGGATTGCATCATATCCAAGTCCTGGCTTATGAAGATTATTATCTGC---TTAGTCATATG
ATCCGGGAGGTGAGCGATGCTACTAACAACAGCTTATGCATAACGTCGGATCTGGTAGTATGGGATTAATGTTAATAAAC
TTAACCAGAAAAAAAGGAAAATGAAAGTTAGTAGTATGTTTTATACGAAGAAACTTGATGGAG
>chr5B_1
AAACACTGTAAATTCATGGACTGGTACTTGATTGAGAGTGTTTTGATCTGCCTGTGATAGCACGATTTTACGA-TTGGCT
GGAGAACATGTGATAACTAATTTATCTATAACATGATATCTATGTTTTGAATTTCACAAAATAGGAACAAAGACTATGAA
TTTGCAGTTGGCTGGTCTTGCACCAGCATCTAATCAATGGCTCTTCCTCTGGATTTCATGGGTTTTCGGCG-TTGTACCC
TATCTTCTGCTAGCAAGTCCTTTGTGTGTACAACTTTGCCTTGATGAATGGACTCTATTTCGGCCAGTTCCCTAAAGAAA
TCTGCCGATCTTTGGTTCACGTGTTTATTTATGTAAAAAAACTTGATTTGGTAAGTGAAACATGCAGAACGTGAGCAGTT
TAGATGAAAGAAATATTCTATATAAGTTGGGCAATTTATAACTTACATGATCTTTAAGTTGTCGTATTCGACATGTCTTT
CCATAAAACCCACCTTCCTGAGTTATTACTGAACCAAAAATTATTGTGCTCCTGTTTTGCCATTTTGTGTATATCTGATC
TGAAGCTGTTTCGGTTTCTCGACCC-------------------------------------------------------
-------------------------------------------TTAAGGTGCACACTTCCCTACAATTAGTATGTCATAT
TCTGCTCCTGTTTTGCCATTTTGTGTATATCTGATCTGAAGCTGT-ACGGTTTCTCGACCATTAAGGTATACACTTCCTG
ACAATTAGTATGTCTTCGAGCCAGCCACTTACATCAGACTTTGGTCATAGGGCCTGCCAGATGGCAACTCCAGAATATAT
AAAGCTCGG-TTTTTTTGGCTTGCCTGCATATTGGCAAGTCAATTTTTGGCATCAAACCAAACAGCTCGGTAGTCTTTAA
AGTTTACTTTTAGTTTTAACGCCTTTATGA--TATAAAACCAGGTAAGGTCCTCTGTAATTGGGATACGAGTTGTTTCCT
TTGTGTACACCGACATAAGTGCCATGGGGCATTGAGT-------------ATTCTGAAACAGTTTCTAGGAGTCTAGGCG
ACTAGGCCTCCTAAAGGGGCTGCGGTGAAAATTTCTTTCATGTCTGAGTTGTCTTTCAATGACTGGGTTTCAATTTAGAA
AGCTTTAAGTTTGCTAACCTATCTAGCAAAAGCATATCTAATTCCGTAAGGTGCAGATGTGTTTTGAGCATGAGTGGTAA
ACACTCAATATTCATGAGCAGTAAGTGATTTTGGTTTCGAGGGTCTGCATCTAGATCTATTAGTTGCATTGGGATATGAG
TTATAAAACTAGCTAAGGTCCTCTGTAATTGGGATATGAGTTGTTTCCTTCGTGGACACGACATAAGTGCCATGGGGCAT
TGAGCGTAACAAATAATAATTCTGAAACAGTTTCTAGGAGTCTAGGCCTCCTAAAGTGGCTGCATTGACAATTTCTTTCA
TGTCTGAGTTGTCTTTCAGTGACTGGGTTTCAGTTTAGAAAGCTTCAAGTTTGCTAACCTATCTAGCAAAAGCATATCTA
ATTCTGTAAGGTGCAGATGTGTTTTGAGCATGAGTGGCAAGCATTCAATATTCATGAGCAGAGTGATTCTGGTTTCGAGG
GTCTGCATCTATTAGTTGCGCTGGGTTGGTGACAATTTCTTTCATGTCTTTGAGTTGCCTTTCAGTGACCGGGTTTCAAT
TTAGAAAGCTTTAAGTTTGCTAACCTATCTAGCAAAAGGATATCTAATTCCGTAAGGTGCAGACGTGTTTTGAGCATGAG
TGTCAAACACTCAATATTGATGAGCAGAGTGATTCTGGTTTCGCGGGTCTGCATCTATTAGTTGCACT---GGTTGGTGG
TTTGTGAAACATCTTTTGTGAATTGCATTGCTAAGTAAAATTTTGTCTTTTTTACTGAAGCTTAGTTAGTTAAGTTAATA
TGTTGTTACTAAACATCTGCTTTCCCTCCTAAATGGTTGTTGCTTATTTCATTCAGCTACTTTCCCCATGCAGTTGTTTT
CATAGGGCTTTGGGAACTTGCAACTTACAGATTGTGTTTTGTTTTGTCAGGTTGGCAAACGTCTTCGGTACCTGACGAAG
CACCCTAACTCAGACATACAGGCGGTGGCTGCAGACCTTTTTGGGTACTGGAAGAAGGTTGTTATTGAAGAGACAGGAAA
GAAAAACGGCACACCAGCAAATGGAAAATCAAACAACTCTGCAGCTAAGGCTGAGAAACCTCAGCCCATGAAGGTTGAAA
GGAAGTCA------GCGAACGTGAAGGTTGAAAAGAACTCTACGTCGACGACTGTGAAGACTGAAAAGAATGCAACTGTG
AAGACTGAAAAGGATTCTATGTCGGCAAGTGTG---------------------------AAGATTGAGAAGACTGTGAA
TAGTGATTCCAAAGTCCAA---GTTAAGGTAGAGAAGGTTTCAAAGGAAGTTAGCAGAACATCTGAAACAAAGAAACCAT
CTTCTGTTCCAAATGGTCCCCCAAAGCTGACATCCCTTGTCAGATGCAACGATGCTGCTCGAGATAAATACAGGGAGCTT
CTTGTTGACGCCTTCGTCAAGGTTTCCAAGGAAACTAGTGATGATGACAGAGAGGAAATAAGAGATCTCCTGGACCAGGT
AAATGCATGCGACCCATATAGAGTTGCTGTGACAGTGGAGTCGGCGCTGTTTGAGAGGATAGGGCGTTCCACCGGGACCC
ACAAGGTGAAATACAGGTCGATACTGTTCAACCTGAAAGCCGACAACAACCCCGACTTCCGGCGGAGGGTGCTGCTGGGC
GAGGTGAGGCCCGGGAGCCTGGTGGACATGCCCGCGGACGAGATGGCGAGCGACGCTCGGAAGCTGGAGAACCAGCAGAT
CAAGGAGAAGGCCCTGTTTGACTGCGAGCGCGCGTCGGCGCCCAAGGCGTCGACGGACCAGTTCAAGTGCGGGCGTTGCG
GGCAGCGCAAGACGACCTACTACCAGCTGCAGACCCGGAGTGCGGACGAGCCGATGACGACGTTCGTGACGTGCGTCAAC
TGCAACAACCACTGGAAGTTCTGCTGAGCGCGGGGGAGCGACTCTGCTGCAACAACTGCTAGCGTGTTTTTCCTGTTAGC
GATGCCGTTTCAGTCTTGACAGGTAGGC-----TGGTCCGTTTTTTCGTATGCTTAGGAGGAGACTGTTTTCTTGTGTTG
TTTTTTCTGTGGTTATTAAGAACCCTGATTTATTCAGATTGTGTACTAGTTGACCGCATAAATGTTGTTCGCTGGATGAA
CTCATGTTGCCTGATGTAAGTTTTATGAAAGAGATTGTTCTGTGGTCGTTATGTATATACACTCACATAGTGATACTGTG
ATAGTAATTAAGA---AGAAACGAACGGTGTTGCTCTCATGGAGATGGGGACATGTAGGTATCGGAGTTGAGTCATGTTG
AGTTGTTAGATTATAC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>chr5D_1
AAACACTGTAAATTCATGAACCGGTACT-GATTGAGAGTGTTTTGATCCGCCTATGATGACACAGTTTTACAATTTGGCT
GGAGAACACGTCATAACTAGTTTATCTGTAACATGAAATCTATGTTTTGAATTTCACAAAATAGGAACAAAGACTATGAA
TTTGCAGTTGGCTCGTCTTGCACCAGCATGTAATTAATGTCTCTTACTATGAATTTCATGGGGTTTTCATGATTGTGCCC
TATGTTCTGCTAGCAAGTCCTTTGTGTATATAACTTTGCCTTGATGAATGGACTGTATTTCTGCCAGTTCCCTAAAAAAA
TCTGCCGATCTTTGGTTCACATGTTTATGTGT-----AAAACTTGACTTGGTAAGTAAAGCGTGCAGAGCGTGAGCAGTT
TAGATCAAAGAAATATTCTATATAATTTGGGCAAGTCATAACTTACAGGATCTTTAAGTTGTCGTATTCGACATGTCTTT
CCATAAAAGTCACCTCCCTGAGTTA---CTGAACCAATAATTATTGTGCTCCTGTTTTGCCATTTTGTGT------GATC
TGAAGCTGTAATGATTTCTCAACTGTTAAGGTGCAT--------------------------------------------
------------------------------------------------------ACTTCCCGACAGTTAGTATGTCATAT
TGTGCCCCCGTTTTGCCATTTTGTGTATATCTGATCTGAAGCTGCAACGGTTTCTCGACCGTTAAGGTGCACACTTCCCG
ACAATTCGTATGTCATATTGTGCTCCCGTTTTGCCATTTTGTGTATATCTGAT-----------------CTGAAGTTGA
TAAAGCC-GTTTTTTTGGGCTTGCCTGCATATTGGCAAGTCAATTTTTGCCATCAAACCAAACAGCTCCGTAGTCTTTAA
AGTTTACTTATAGTTTTAACACCTTAATGATTTATAAAACTAGGTAAGGTCCTCTGTAATTGGGATATGAGTTGTTTCCT
TAGTGGACACCGACATAAGTGCCATGGGGAATTGAGCGTAACAAATAATAATTCTTGAACAGTTTCTATGAGTCTAGGC-
-------CTCGTAAAAGGGCTGCA--------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------G---
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGACAATTTCTTTCA
TGTCTGAGTTGTCTTTCAGTGACTGGGTTTCAATTTAGAAAGCTTCAAGTTTGCTAACCTATATACCAAAAGCATATCTA
ATTCCGTAAGGTGCTGATGTGTTTTGAGCATGAGTGGCAAGCACT-AATATTCATGAGCAGAGTGATTCTGGTTTCGAGG
GTCTGCATCTATTAGTTGCGCTGGGTTGGTGACAATTTCTTTCATGTC--TGAGTTGCCTTTCAGTGACCGGGTTTCAAT
TTAGAAAGCTTTAAGTTTGCTAACCTATCTAGCAAAAGCATATCTAATTCCGTAAGGTGCAGATGTGTTTTGAGCATGAG
TGGCAAACACTCAATATCGATGAGCAGAGTGATTCTGGTTTCGCGGGTCTGCATCTATTAGTTGTGCGCTGGGTTGGTGG
TTTGTGAAACATCTTTTGTGAATTGCATTGCTAAGTAAAATATTGTC-TTTTTACTGAAGCTTAGTTAATCAATTTAATA
TGTTGTTACTAAACATCCGCTTTCCCTCCTAAATGGTTATTGCTTATTTCATTCAGCTACTTCCCCCATGCAGTTGTTCT
CATAGGGCTTTGAGAACTTGCAACTTACAGATTGTGTTTTGTTTTGTCAGGTTGGCAAACGTCTTCGGTACCTGACGAAG
CACCCTAACTCAGACATACAGGCGGTGGCTGCAGACCTTTTTGGGTACTGGAAGAAGGTTGTTATTGAAGAGACAGGAAA
GAAAAACGGCACACCAGCGAATGGAAAATCAGATAACTCTGCAGCTAAGGCTGAGAAACCTCAGCCCATGAAGATTGAAA
AGAATTCTATGCCGGCAAAGGTGAAGGTTGAAAAGAATTCTACATCA------------------------GCAACTGTG
AAGACTGAAAAGAGTTCCATGTCGGCAAGTGTGAAGATTGAGAAAAAAGATGGGAGTGTCAAGGTTGAGAAGACTGCGAA
TAATGATTCCAAAGTCCAGCATGTTAAGGTAGAGAAGGTTTCAAAGGAATCTAGCAGAACAACTGATACGAAGAAGCCAT
CGTCTGTTCCAAGTGGCCCCCCAAAGCTGACATCCCTTGTCAGATGCAACGATGCTGCTCGAGATAAATACAGGGAGCTT
CTTGTTGACGCCTTCGTCAAGGTTTCCAAGGAAACTAGCGAGGATGACAGAGAGGAAATAAGAGATCTCCTGGACCAGGT
AAATGCATGCGACCCATATAGAGTTGCTGTGACAGTGGAGTCGGCCTTGTTTGAGAGGATCGGGCGTTCCACCGGGACCC
ACAAGGTGAAATACAGGTCGATACTGTTCAACCTGAAGGCGGACAACAACCCTGACTTCCGGCGGAGGGTGCTGCTGGGC
GAGGTGAGGCCCGGGAGCCTGGTGGACATGCCCGCAGACGAGATGGCCAGCGACGCTCGGAAGCTGGAGAACCAGCAGAT
CAAGGAGAAGGCCCTGTTTGACTGCGAGCGCGCGTCGGCGCCCAAGGCGTCGACGGACCAGTTCAAGTGCGGGCGTTGCG
GGCAGCGCAAGACGACCTACTACCAGCTGCAGACCCGGAGTGCGGACGAGCCGATGACGACGTTCGTGACGTGCGTCAAC
TGCAACAACCACTGGAAGTTCTGCTGAGCGCCG----GCGACTCTGCTG---CAACTGCTAGCGTGTTTTTCCTGTTAGC
GATGCCGTTTCAGTCTTGACAGGTAGGC-----TGGTCCGTTTTTTCATATGCTTAGGAGGAGACTGTTTTCTTGTGTTG
TTTTTAATGTGGTTATTAAGAACCCTGATTTATTCAGATTGTGTACTAGTTGACCGCATAAATGTTGTTCGCTGGATGAA
CTGATGTTGCCTGATGTAAGTTTTATGAAAGAGATTGTTCTGTGTTAGTTATGTATATACACTCACATAGTGATACTGTG
ATAGTAATGAAGAAACAGGCT------GTGTTGCTCTCATGGAGATGGGGACATGAGGGTATCGGAG------CATGTTG
AGTTGTTAGATTATACGGTGCTGTG-----------GATGCTGGTGGGTCGCATAGTGAAGGACCGAAGGAGTTATTCTG
GTGCATTTGGAATGCTTCAGCAGAAGTGGGTGCAATGGATGGATCTCTTCTCGAGCCTTATTTCTCCTATTTATATCTTC
TTCTTCTACCTAATGCACCTTCCTCTCAACGTGCTGCCGGGGATGAGCTTTATATTTGGGCTTTGGGTTGGGTGAGGTTC
ATTGTCATATTTGCCAGATGGACTGAAACTCTGAAACCATATGTACAAGTCTGAAGTTCCTTGCCTCTTACAGTATCAGG
ATATATGT------------------------------------TCTCCTACCAAAGCCTT-CCCATGCCCCCCTATTGG
CTGGATGCCTCATTTCATTTTTGATGATAGGTTGCCACTTCAACTTGTGCCGCCGTGTTTATGTCTTCTTACGTATTTAT
TTTTAT--TCTTGCACACAGAGATTGCATCATATCCAAGTCCTGGCTTATGAAGATTATTATTTGCTTATTAGTCATATG
ATCCGGGAGGTGAGCGATGCTACTCACAACAGCTTATGCATAACGTTGGAT-----------------------------
---------------------------------------------------------------
>SNPs
------------------------------------------S-------------------------------------
--------------------------------------S-----------------------------------S-----
-----S----S--------------------------------------------------S--------SS-SSS----
S-------------------------------------------------------------------------------
-------------------S---------------------S--------------------------------------
--------------------------------------------S---------S-------------S----------S
----------S-S--------------------------S----------------------------------------
------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
-------------------------S--------------------------------S-----S----------S----
------------------------------------------SS---------------S-----------------S--
-------------------------------------------------S-----------------S------------
S-------------------------------------------------------------------------------
-S--------S----------------------------------S----------------------------------
----------------------------S-----------------------------S---------------------
-----S------------------S---------------S------------S---S-------------------S--
S-----------------------------S------------------------------------SS----S-S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S-------------------------S-----------------S----------------
-----S------------------------SS--------SSSS------------------------------------
S--------------------------------------------------------------------S----------
------------------------------------------------------S-------------------------
------------------S------------------------S------------------------------------
-------------------S--S-------------------------------------------------------S-
-S-SS------------------------------S----------------------------------S---------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S-------------S----------S------S---------S--------------------
-----------------------------S--------------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------S------------------------------------------
-----------S--------------------------------------------------------S-----------
------------------------------------------------------------------------S-------
----------------------------------S---------------------------------------------
--------------------------S-----S-----------------------------------------------
---------------------------------------------------------------------------S--S-
----------------------------------S--------S--------S-----------S---------------
-------------------------------S-SS-S-SSSS-S-SSSS-SS-S-SS----------------------S
--------S------------------SSSSSS------SS---------------------S---------S-S-----
-----------S--SS----------------------------------------------------------------
S------------------S--------------S-----S----------S--------------------S-------
----------SS-SSS------SS------S-S-----S--S------S---------SS--------SS---S------
----------------SSSSSS-SSSSSSSSSSSSS---------S-S-------------S---S--------------
----S------------------------------S-----------------------------------S--------
----------------------S----S----S-S-----------S----S-S--------------------------
----------------S-----------S---------------------------------S-S----S---------S
----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------S--------S---------
--------S-------------S---S------------------------S--------------------------S-
------SS------------S-----------------------------------------S-----------------
------------------------S---------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_643
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GTGCTCCCGTTTTGCCA
TTT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2835
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAAGGCGGACAACAACCCTG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_2598
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CCCCAAAGCTGACATCCCTC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_3554
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------TGTGATGCTGGTTGATCGCA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
