Multiple sequence alignment - TraesCS5A01G452100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G452100 chr5A 100.000 2393 0 0 1 2393 633754953 633752561 0.000000e+00 4420
1 TraesCS5A01G452100 chr5A 78.628 1502 251 45 332 1805 633049877 633051336 0.000000e+00 931
2 TraesCS5A01G452100 chr5A 78.577 1363 254 24 348 1686 633635780 633634432 0.000000e+00 865
3 TraesCS5A01G452100 chr5A 78.999 1338 196 51 352 1645 633109767 633111063 0.000000e+00 835
4 TraesCS5A01G452100 chr5B 92.959 1264 81 5 335 1595 636541504 636540246 0.000000e+00 1834
5 TraesCS5A01G452100 chr5B 80.645 1395 227 31 348 1718 636349132 636347757 0.000000e+00 1040
6 TraesCS5A01G452100 chr5B 80.103 1362 215 34 332 1645 635767877 635769230 0.000000e+00 963
7 TraesCS5A01G452100 chr5B 91.022 401 26 4 1625 2020 636540244 636539849 1.260000e-147 532
8 TraesCS5A01G452100 chr5B 88.189 254 24 4 2009 2260 636510512 636510263 5.000000e-77 298
9 TraesCS5A01G452100 chr5B 92.424 132 10 0 2260 2391 636506799 636506668 3.140000e-44 189
10 TraesCS5A01G452100 chr5B 76.000 350 54 21 1557 1890 635795856 635796191 1.150000e-33 154
11 TraesCS5A01G452100 chr5D 81.015 1359 225 21 348 1686 505935579 505934234 0.000000e+00 1050
12 TraesCS5A01G452100 chr5D 79.868 1361 216 40 332 1645 505739042 505740391 0.000000e+00 942
13 TraesCS5A01G452100 chr5D 81.499 1081 172 16 353 1413 505779701 505780773 0.000000e+00 863
14 TraesCS5A01G452100 chr5D 85.535 159 21 2 136 293 438324298 438324455 5.290000e-37 165
15 TraesCS5A01G452100 chr2D 88.636 88 9 1 185 272 547767805 547767891 3.250000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G452100 chr5A 633752561 633754953 2392 True 4420.0 4420 100.0000 1 2393 1 chr5A.!!$R2 2392
1 TraesCS5A01G452100 chr5A 633049877 633051336 1459 False 931.0 931 78.6280 332 1805 1 chr5A.!!$F1 1473
2 TraesCS5A01G452100 chr5A 633634432 633635780 1348 True 865.0 865 78.5770 348 1686 1 chr5A.!!$R1 1338
3 TraesCS5A01G452100 chr5A 633109767 633111063 1296 False 835.0 835 78.9990 352 1645 1 chr5A.!!$F2 1293
4 TraesCS5A01G452100 chr5B 636539849 636541504 1655 True 1183.0 1834 91.9905 335 2020 2 chr5B.!!$R3 1685
5 TraesCS5A01G452100 chr5B 636347757 636349132 1375 True 1040.0 1040 80.6450 348 1718 1 chr5B.!!$R1 1370
6 TraesCS5A01G452100 chr5B 635767877 635769230 1353 False 963.0 963 80.1030 332 1645 1 chr5B.!!$F1 1313
7 TraesCS5A01G452100 chr5B 636506668 636510512 3844 True 243.5 298 90.3065 2009 2391 2 chr5B.!!$R2 382
8 TraesCS5A01G452100 chr5D 505934234 505935579 1345 True 1050.0 1050 81.0150 348 1686 1 chr5D.!!$R1 1338
9 TraesCS5A01G452100 chr5D 505739042 505740391 1349 False 942.0 942 79.8680 332 1645 1 chr5D.!!$F2 1313
10 TraesCS5A01G452100 chr5D 505779701 505780773 1072 False 863.0 863 81.4990 353 1413 1 chr5D.!!$F3 1060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.032403 TGCAACAAAGGTCATGCTGC 59.968 50.0 0.0 0.0 39.65 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 2334 0.027979 CGCCTTATGTGTCGGCAATG 59.972 55.0 0.0 0.0 43.95 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.918810 AAAAGCGAACAAAACCATCTCT 57.081 36.364 0.00 0.00 0.00 3.10
24 25 4.918810 AAAGCGAACAAAACCATCTCTT 57.081 36.364 0.00 0.00 0.00 2.85
25 26 4.918810 AAGCGAACAAAACCATCTCTTT 57.081 36.364 0.00 0.00 0.00 2.52
26 27 6.385649 AAAGCGAACAAAACCATCTCTTTA 57.614 33.333 0.00 0.00 29.18 1.85
27 28 6.575162 AAGCGAACAAAACCATCTCTTTAT 57.425 33.333 0.00 0.00 0.00 1.40
28 29 6.183309 AGCGAACAAAACCATCTCTTTATC 57.817 37.500 0.00 0.00 0.00 1.75
29 30 5.940470 AGCGAACAAAACCATCTCTTTATCT 59.060 36.000 0.00 0.00 0.00 1.98
30 31 6.092807 AGCGAACAAAACCATCTCTTTATCTC 59.907 38.462 0.00 0.00 0.00 2.75
31 32 6.092807 GCGAACAAAACCATCTCTTTATCTCT 59.907 38.462 0.00 0.00 0.00 3.10
32 33 7.277981 GCGAACAAAACCATCTCTTTATCTCTA 59.722 37.037 0.00 0.00 0.00 2.43
33 34 9.151471 CGAACAAAACCATCTCTTTATCTCTAA 57.849 33.333 0.00 0.00 0.00 2.10
36 37 9.660180 ACAAAACCATCTCTTTATCTCTAACTC 57.340 33.333 0.00 0.00 0.00 3.01
37 38 9.103861 CAAAACCATCTCTTTATCTCTAACTCC 57.896 37.037 0.00 0.00 0.00 3.85
38 39 6.987403 ACCATCTCTTTATCTCTAACTCCC 57.013 41.667 0.00 0.00 0.00 4.30
39 40 5.536916 ACCATCTCTTTATCTCTAACTCCCG 59.463 44.000 0.00 0.00 0.00 5.14
40 41 5.770663 CCATCTCTTTATCTCTAACTCCCGA 59.229 44.000 0.00 0.00 0.00 5.14
41 42 6.294286 CCATCTCTTTATCTCTAACTCCCGAC 60.294 46.154 0.00 0.00 0.00 4.79
42 43 5.131784 TCTCTTTATCTCTAACTCCCGACC 58.868 45.833 0.00 0.00 0.00 4.79
43 44 4.863548 TCTTTATCTCTAACTCCCGACCA 58.136 43.478 0.00 0.00 0.00 4.02
44 45 5.266788 TCTTTATCTCTAACTCCCGACCAA 58.733 41.667 0.00 0.00 0.00 3.67
45 46 5.718130 TCTTTATCTCTAACTCCCGACCAAA 59.282 40.000 0.00 0.00 0.00 3.28
46 47 3.889520 ATCTCTAACTCCCGACCAAAC 57.110 47.619 0.00 0.00 0.00 2.93
47 48 2.600790 TCTCTAACTCCCGACCAAACA 58.399 47.619 0.00 0.00 0.00 2.83
48 49 2.967201 TCTCTAACTCCCGACCAAACAA 59.033 45.455 0.00 0.00 0.00 2.83
49 50 3.581332 TCTCTAACTCCCGACCAAACAAT 59.419 43.478 0.00 0.00 0.00 2.71
50 51 4.041198 TCTCTAACTCCCGACCAAACAATT 59.959 41.667 0.00 0.00 0.00 2.32
51 52 5.246656 TCTCTAACTCCCGACCAAACAATTA 59.753 40.000 0.00 0.00 0.00 1.40
52 53 5.867330 TCTAACTCCCGACCAAACAATTAA 58.133 37.500 0.00 0.00 0.00 1.40
53 54 4.841443 AACTCCCGACCAAACAATTAAC 57.159 40.909 0.00 0.00 0.00 2.01
54 55 3.151554 ACTCCCGACCAAACAATTAACC 58.848 45.455 0.00 0.00 0.00 2.85
55 56 3.181437 ACTCCCGACCAAACAATTAACCT 60.181 43.478 0.00 0.00 0.00 3.50
56 57 3.150767 TCCCGACCAAACAATTAACCTG 58.849 45.455 0.00 0.00 0.00 4.00
57 58 3.150767 CCCGACCAAACAATTAACCTGA 58.849 45.455 0.00 0.00 0.00 3.86
58 59 3.761752 CCCGACCAAACAATTAACCTGAT 59.238 43.478 0.00 0.00 0.00 2.90
59 60 4.142469 CCCGACCAAACAATTAACCTGATC 60.142 45.833 0.00 0.00 0.00 2.92
60 61 4.457603 CCGACCAAACAATTAACCTGATCA 59.542 41.667 0.00 0.00 0.00 2.92
61 62 5.390613 CGACCAAACAATTAACCTGATCAC 58.609 41.667 0.00 0.00 0.00 3.06
62 63 5.049060 CGACCAAACAATTAACCTGATCACA 60.049 40.000 0.00 0.00 0.00 3.58
63 64 6.349280 CGACCAAACAATTAACCTGATCACAT 60.349 38.462 0.00 0.00 0.00 3.21
64 65 6.690530 ACCAAACAATTAACCTGATCACATG 58.309 36.000 0.00 0.00 0.00 3.21
65 66 6.493115 ACCAAACAATTAACCTGATCACATGA 59.507 34.615 0.00 0.00 0.00 3.07
66 67 7.178983 ACCAAACAATTAACCTGATCACATGAT 59.821 33.333 0.00 0.00 37.51 2.45
67 68 8.036575 CCAAACAATTAACCTGATCACATGATT 58.963 33.333 0.00 0.00 34.37 2.57
68 69 9.426837 CAAACAATTAACCTGATCACATGATTT 57.573 29.630 0.00 0.00 34.37 2.17
103 104 7.654568 AGGTACTATAAAACAACAACAAAGCC 58.345 34.615 0.00 0.00 36.02 4.35
104 105 7.504574 AGGTACTATAAAACAACAACAAAGCCT 59.495 33.333 0.00 0.00 36.02 4.58
105 106 8.139350 GGTACTATAAAACAACAACAAAGCCTT 58.861 33.333 0.00 0.00 0.00 4.35
106 107 9.524106 GTACTATAAAACAACAACAAAGCCTTT 57.476 29.630 0.00 0.00 0.00 3.11
115 116 9.606631 AACAACAACAAAGCCTTTAAATAATGA 57.393 25.926 0.00 0.00 0.00 2.57
116 117 9.260002 ACAACAACAAAGCCTTTAAATAATGAG 57.740 29.630 0.00 0.00 0.00 2.90
117 118 8.711457 CAACAACAAAGCCTTTAAATAATGAGG 58.289 33.333 0.00 0.00 0.00 3.86
126 127 6.373779 CCTTTAAATAATGAGGCATGCTACG 58.626 40.000 18.92 0.00 0.00 3.51
127 128 3.904136 AAATAATGAGGCATGCTACGC 57.096 42.857 18.92 4.07 0.00 4.42
128 129 1.432514 ATAATGAGGCATGCTACGCG 58.567 50.000 18.92 3.53 0.00 6.01
129 130 0.104120 TAATGAGGCATGCTACGCGT 59.896 50.000 19.17 19.17 0.00 6.01
130 131 1.154205 AATGAGGCATGCTACGCGTC 61.154 55.000 18.63 1.99 42.97 5.19
131 132 2.962253 GAGGCATGCTACGCGTCC 60.962 66.667 18.63 10.16 38.11 4.79
132 133 4.873129 AGGCATGCTACGCGTCCG 62.873 66.667 18.63 9.93 41.14 4.79
134 135 3.617538 GCATGCTACGCGTCCGTC 61.618 66.667 18.63 3.80 46.39 4.79
135 136 2.202557 CATGCTACGCGTCCGTCA 60.203 61.111 18.63 10.20 46.39 4.35
136 137 1.803922 CATGCTACGCGTCCGTCAA 60.804 57.895 18.63 0.00 46.39 3.18
137 138 1.080366 ATGCTACGCGTCCGTCAAA 60.080 52.632 18.63 0.00 46.39 2.69
138 139 0.668096 ATGCTACGCGTCCGTCAAAA 60.668 50.000 18.63 0.00 46.39 2.44
139 140 1.279527 TGCTACGCGTCCGTCAAAAG 61.280 55.000 18.63 5.93 46.39 2.27
140 141 1.005294 GCTACGCGTCCGTCAAAAGA 61.005 55.000 18.63 0.00 46.39 2.52
141 142 1.625616 CTACGCGTCCGTCAAAAGAT 58.374 50.000 18.63 0.00 46.39 2.40
142 143 1.582502 CTACGCGTCCGTCAAAAGATC 59.417 52.381 18.63 0.00 46.39 2.75
143 144 0.319211 ACGCGTCCGTCAAAAGATCA 60.319 50.000 5.58 0.00 46.39 2.92
144 145 0.787787 CGCGTCCGTCAAAAGATCAA 59.212 50.000 0.00 0.00 0.00 2.57
145 146 1.461888 CGCGTCCGTCAAAAGATCAAC 60.462 52.381 0.00 0.00 0.00 3.18
146 147 1.136057 GCGTCCGTCAAAAGATCAACC 60.136 52.381 0.00 0.00 0.00 3.77
147 148 1.126113 CGTCCGTCAAAAGATCAACCG 59.874 52.381 0.00 0.00 0.00 4.44
148 149 1.463444 GTCCGTCAAAAGATCAACCGG 59.537 52.381 0.00 0.00 35.41 5.28
149 150 0.802494 CCGTCAAAAGATCAACCGGG 59.198 55.000 6.32 0.00 0.00 5.73
150 151 1.519408 CGTCAAAAGATCAACCGGGT 58.481 50.000 6.32 0.00 0.00 5.28
151 152 1.463444 CGTCAAAAGATCAACCGGGTC 59.537 52.381 6.32 0.00 0.00 4.46
152 153 2.500229 GTCAAAAGATCAACCGGGTCA 58.500 47.619 6.32 0.00 0.00 4.02
153 154 3.081804 GTCAAAAGATCAACCGGGTCAT 58.918 45.455 6.32 0.00 0.00 3.06
154 155 3.081061 TCAAAAGATCAACCGGGTCATG 58.919 45.455 6.32 0.00 0.00 3.07
155 156 3.081061 CAAAAGATCAACCGGGTCATGA 58.919 45.455 6.32 1.36 0.00 3.07
156 157 2.698855 AAGATCAACCGGGTCATGAG 57.301 50.000 6.32 0.00 0.00 2.90
157 158 0.179000 AGATCAACCGGGTCATGAGC 59.821 55.000 16.65 16.65 0.00 4.26
158 159 0.815615 GATCAACCGGGTCATGAGCC 60.816 60.000 30.24 30.24 45.13 4.70
168 169 2.768698 GGTCATGAGCCATCAGATCTG 58.231 52.381 17.07 17.07 39.29 2.90
169 170 2.367894 GGTCATGAGCCATCAGATCTGA 59.632 50.000 27.03 27.03 44.59 3.27
170 171 3.181457 GGTCATGAGCCATCAGATCTGAA 60.181 47.826 28.40 12.04 43.58 3.02
171 172 4.059511 GTCATGAGCCATCAGATCTGAAG 58.940 47.826 28.40 23.39 43.58 3.02
172 173 3.710165 TCATGAGCCATCAGATCTGAAGT 59.290 43.478 28.40 11.27 43.58 3.01
173 174 4.163649 TCATGAGCCATCAGATCTGAAGTT 59.836 41.667 28.40 19.93 43.58 2.66
174 175 5.364735 TCATGAGCCATCAGATCTGAAGTTA 59.635 40.000 28.40 13.48 43.58 2.24
175 176 5.883685 TGAGCCATCAGATCTGAAGTTAT 57.116 39.130 28.40 13.90 43.58 1.89
176 177 5.851720 TGAGCCATCAGATCTGAAGTTATC 58.148 41.667 28.40 20.76 43.58 1.75
177 178 5.364735 TGAGCCATCAGATCTGAAGTTATCA 59.635 40.000 28.40 22.71 43.58 2.15
178 179 6.126968 TGAGCCATCAGATCTGAAGTTATCAA 60.127 38.462 28.40 8.57 43.58 2.57
179 180 6.289834 AGCCATCAGATCTGAAGTTATCAAG 58.710 40.000 28.40 10.90 43.58 3.02
180 181 5.049543 GCCATCAGATCTGAAGTTATCAAGC 60.050 44.000 28.40 16.33 43.58 4.01
181 182 5.177142 CCATCAGATCTGAAGTTATCAAGCG 59.823 44.000 28.40 5.25 43.58 4.68
182 183 4.686972 TCAGATCTGAAGTTATCAAGCGG 58.313 43.478 23.17 0.00 37.67 5.52
183 184 3.247173 CAGATCTGAAGTTATCAAGCGGC 59.753 47.826 18.34 0.00 37.67 6.53
184 185 2.024176 TCTGAAGTTATCAAGCGGCC 57.976 50.000 0.00 0.00 37.67 6.13
185 186 0.652592 CTGAAGTTATCAAGCGGCCG 59.347 55.000 24.05 24.05 37.67 6.13
186 187 0.248012 TGAAGTTATCAAGCGGCCGA 59.752 50.000 33.48 8.40 34.30 5.54
187 188 0.931005 GAAGTTATCAAGCGGCCGAG 59.069 55.000 33.48 18.20 0.00 4.63
188 189 1.090052 AAGTTATCAAGCGGCCGAGC 61.090 55.000 33.48 12.91 37.41 5.03
189 190 2.584970 TTATCAAGCGGCCGAGCG 60.585 61.111 33.48 16.02 43.00 5.03
190 191 4.585526 TATCAAGCGGCCGAGCGG 62.586 66.667 33.48 14.99 43.00 5.52
205 206 3.372730 CGGCACCCACCACCATTG 61.373 66.667 0.00 0.00 0.00 2.82
206 207 3.694538 GGCACCCACCACCATTGC 61.695 66.667 0.00 0.00 0.00 3.56
207 208 2.916703 GCACCCACCACCATTGCA 60.917 61.111 0.00 0.00 33.24 4.08
208 209 2.506061 GCACCCACCACCATTGCAA 61.506 57.895 0.00 0.00 33.24 4.08
209 210 1.367102 CACCCACCACCATTGCAAC 59.633 57.895 0.00 0.00 0.00 4.17
210 211 1.075674 ACCCACCACCATTGCAACA 60.076 52.632 0.00 0.00 0.00 3.33
211 212 0.689080 ACCCACCACCATTGCAACAA 60.689 50.000 0.00 0.00 0.00 2.83
212 213 0.467384 CCCACCACCATTGCAACAAA 59.533 50.000 0.00 0.00 0.00 2.83
213 214 1.580815 CCACCACCATTGCAACAAAC 58.419 50.000 0.00 0.00 0.00 2.93
214 215 1.138661 CCACCACCATTGCAACAAACT 59.861 47.619 0.00 0.00 0.00 2.66
215 216 2.419851 CCACCACCATTGCAACAAACTT 60.420 45.455 0.00 0.00 0.00 2.66
216 217 2.865551 CACCACCATTGCAACAAACTTC 59.134 45.455 0.00 0.00 0.00 3.01
217 218 2.765699 ACCACCATTGCAACAAACTTCT 59.234 40.909 0.00 0.00 0.00 2.85
218 219 3.197549 ACCACCATTGCAACAAACTTCTT 59.802 39.130 0.00 0.00 0.00 2.52
219 220 3.556775 CCACCATTGCAACAAACTTCTTG 59.443 43.478 0.00 0.00 0.00 3.02
220 221 4.183101 CACCATTGCAACAAACTTCTTGT 58.817 39.130 0.00 0.00 0.00 3.16
221 222 4.630940 CACCATTGCAACAAACTTCTTGTT 59.369 37.500 0.00 0.00 42.75 2.83
227 228 3.859411 AACAAACTTCTTGTTGCGGAA 57.141 38.095 2.21 0.00 40.70 4.30
228 229 3.859411 ACAAACTTCTTGTTGCGGAAA 57.141 38.095 0.00 0.00 39.13 3.13
229 230 4.385358 ACAAACTTCTTGTTGCGGAAAT 57.615 36.364 0.00 0.00 39.13 2.17
230 231 4.359706 ACAAACTTCTTGTTGCGGAAATC 58.640 39.130 0.00 0.00 39.13 2.17
231 232 4.142271 ACAAACTTCTTGTTGCGGAAATCA 60.142 37.500 0.00 0.00 39.13 2.57
232 233 4.853924 AACTTCTTGTTGCGGAAATCAT 57.146 36.364 0.00 0.00 37.52 2.45
233 234 4.853924 ACTTCTTGTTGCGGAAATCATT 57.146 36.364 0.00 0.00 0.00 2.57
234 235 4.549458 ACTTCTTGTTGCGGAAATCATTG 58.451 39.130 0.00 0.00 0.00 2.82
235 236 2.945278 TCTTGTTGCGGAAATCATTGC 58.055 42.857 0.00 0.00 0.00 3.56
236 237 2.295629 TCTTGTTGCGGAAATCATTGCA 59.704 40.909 0.00 0.00 35.15 4.08
237 238 2.808523 TGTTGCGGAAATCATTGCAA 57.191 40.000 0.00 0.00 44.34 4.08
240 241 2.350899 TGCGGAAATCATTGCAACTG 57.649 45.000 0.00 1.67 33.80 3.16
241 242 1.885233 TGCGGAAATCATTGCAACTGA 59.115 42.857 0.00 7.65 33.80 3.41
242 243 2.095110 TGCGGAAATCATTGCAACTGAG 60.095 45.455 0.00 0.00 33.80 3.35
243 244 2.162208 GCGGAAATCATTGCAACTGAGA 59.838 45.455 0.00 0.00 0.00 3.27
244 245 3.181493 GCGGAAATCATTGCAACTGAGAT 60.181 43.478 0.00 0.17 0.00 2.75
245 246 4.676196 GCGGAAATCATTGCAACTGAGATT 60.676 41.667 0.00 6.85 0.00 2.40
246 247 5.404946 CGGAAATCATTGCAACTGAGATTT 58.595 37.500 21.19 21.19 40.47 2.17
247 248 5.865552 CGGAAATCATTGCAACTGAGATTTT 59.134 36.000 21.61 14.82 38.58 1.82
248 249 6.183360 CGGAAATCATTGCAACTGAGATTTTG 60.183 38.462 21.61 16.53 38.58 2.44
249 250 6.647895 GGAAATCATTGCAACTGAGATTTTGT 59.352 34.615 21.61 8.94 38.58 2.83
250 251 7.172019 GGAAATCATTGCAACTGAGATTTTGTT 59.828 33.333 21.61 8.70 38.58 2.83
251 252 7.416154 AATCATTGCAACTGAGATTTTGTTG 57.584 32.000 0.00 0.00 42.55 3.33
258 259 6.264909 CAACTGAGATTTTGTTGCAGAAAC 57.735 37.500 0.00 0.00 39.41 2.78
259 260 4.936891 ACTGAGATTTTGTTGCAGAAACC 58.063 39.130 0.00 0.00 38.06 3.27
260 261 4.646492 ACTGAGATTTTGTTGCAGAAACCT 59.354 37.500 0.00 0.00 38.06 3.50
261 262 5.127682 ACTGAGATTTTGTTGCAGAAACCTT 59.872 36.000 0.00 0.00 38.06 3.50
262 263 5.976458 TGAGATTTTGTTGCAGAAACCTTT 58.024 33.333 0.00 0.00 38.06 3.11
263 264 5.811613 TGAGATTTTGTTGCAGAAACCTTTG 59.188 36.000 0.00 0.00 38.06 2.77
264 265 4.571984 AGATTTTGTTGCAGAAACCTTTGC 59.428 37.500 0.00 0.00 38.06 3.68
270 271 3.325293 TGCAGAAACCTTTGCAACAAA 57.675 38.095 0.00 0.00 46.42 2.83
271 272 3.668447 TGCAGAAACCTTTGCAACAAAA 58.332 36.364 0.00 0.00 46.42 2.44
272 273 3.683822 TGCAGAAACCTTTGCAACAAAAG 59.316 39.130 0.00 0.00 46.42 2.27
273 274 3.684305 GCAGAAACCTTTGCAACAAAAGT 59.316 39.130 0.00 0.00 40.02 2.66
274 275 4.201714 GCAGAAACCTTTGCAACAAAAGTC 60.202 41.667 0.00 0.00 40.02 3.01
275 276 4.928615 CAGAAACCTTTGCAACAAAAGTCA 59.071 37.500 0.00 0.00 35.73 3.41
276 277 5.581874 CAGAAACCTTTGCAACAAAAGTCAT 59.418 36.000 0.00 0.00 35.73 3.06
277 278 5.581874 AGAAACCTTTGCAACAAAAGTCATG 59.418 36.000 0.00 0.00 35.73 3.07
278 279 4.470334 ACCTTTGCAACAAAAGTCATGT 57.530 36.364 0.00 0.00 35.73 3.21
279 280 4.831107 ACCTTTGCAACAAAAGTCATGTT 58.169 34.783 0.00 0.00 41.50 2.71
288 289 5.835113 ACAAAAGTCATGTTGCAGTAACT 57.165 34.783 2.84 0.00 40.05 2.24
289 290 6.207691 ACAAAAGTCATGTTGCAGTAACTT 57.792 33.333 2.84 0.00 40.05 2.66
290 291 6.630071 ACAAAAGTCATGTTGCAGTAACTTT 58.370 32.000 2.84 8.20 40.05 2.66
291 292 7.096551 ACAAAAGTCATGTTGCAGTAACTTTT 58.903 30.769 15.64 15.64 43.77 2.27
292 293 7.602265 ACAAAAGTCATGTTGCAGTAACTTTTT 59.398 29.630 17.42 10.83 42.10 1.94
293 294 7.524294 AAAGTCATGTTGCAGTAACTTTTTG 57.476 32.000 2.84 0.00 40.05 2.44
294 295 5.043248 AGTCATGTTGCAGTAACTTTTTGC 58.957 37.500 2.84 0.00 40.05 3.68
295 296 4.803088 GTCATGTTGCAGTAACTTTTTGCA 59.197 37.500 2.84 0.00 45.28 4.08
301 302 5.776519 TGCAGTAACTTTTTGCAACAAAG 57.223 34.783 21.93 21.93 44.13 2.77
302 303 4.629200 TGCAGTAACTTTTTGCAACAAAGG 59.371 37.500 24.75 12.70 44.13 3.11
303 304 4.629634 GCAGTAACTTTTTGCAACAAAGGT 59.370 37.500 24.75 22.77 35.82 3.50
304 305 5.220397 GCAGTAACTTTTTGCAACAAAGGTC 60.220 40.000 24.75 17.17 35.82 3.85
305 306 5.866633 CAGTAACTTTTTGCAACAAAGGTCA 59.133 36.000 24.75 14.02 35.82 4.02
306 307 6.534793 CAGTAACTTTTTGCAACAAAGGTCAT 59.465 34.615 24.75 14.94 35.82 3.06
307 308 5.799681 AACTTTTTGCAACAAAGGTCATG 57.200 34.783 24.75 7.59 35.82 3.07
308 309 3.622612 ACTTTTTGCAACAAAGGTCATGC 59.377 39.130 24.75 0.00 35.82 4.06
309 310 3.540314 TTTTGCAACAAAGGTCATGCT 57.460 38.095 0.00 0.00 39.49 3.79
310 311 2.512485 TTGCAACAAAGGTCATGCTG 57.488 45.000 0.00 0.00 39.49 4.41
311 312 0.032403 TGCAACAAAGGTCATGCTGC 59.968 50.000 0.00 0.00 39.65 5.25
312 313 0.032403 GCAACAAAGGTCATGCTGCA 59.968 50.000 4.13 4.13 39.17 4.41
313 314 1.933500 GCAACAAAGGTCATGCTGCAG 60.934 52.381 10.11 10.11 39.17 4.41
314 315 1.610038 CAACAAAGGTCATGCTGCAGA 59.390 47.619 20.43 2.70 0.00 4.26
315 316 1.985473 ACAAAGGTCATGCTGCAGAA 58.015 45.000 20.43 7.68 0.00 3.02
316 317 2.309613 ACAAAGGTCATGCTGCAGAAA 58.690 42.857 20.43 4.69 0.00 2.52
317 318 2.035066 ACAAAGGTCATGCTGCAGAAAC 59.965 45.455 20.43 2.26 0.00 2.78
318 319 2.283145 AAGGTCATGCTGCAGAAACT 57.717 45.000 20.43 4.11 0.00 2.66
319 320 2.283145 AGGTCATGCTGCAGAAACTT 57.717 45.000 20.43 0.00 0.00 2.66
320 321 2.590821 AGGTCATGCTGCAGAAACTTT 58.409 42.857 20.43 0.00 0.00 2.66
321 322 2.961062 AGGTCATGCTGCAGAAACTTTT 59.039 40.909 20.43 0.00 0.00 2.27
322 323 3.385755 AGGTCATGCTGCAGAAACTTTTT 59.614 39.130 20.43 0.00 0.00 1.94
323 324 3.492011 GGTCATGCTGCAGAAACTTTTTG 59.508 43.478 20.43 0.21 0.00 2.44
324 325 3.060070 GTCATGCTGCAGAAACTTTTTGC 60.060 43.478 20.43 9.56 38.30 3.68
325 326 2.669300 TGCTGCAGAAACTTTTTGCA 57.331 40.000 20.43 16.50 44.81 4.08
332 333 6.740411 TGCAGAAACTTTTTGCAGAAATTT 57.260 29.167 14.14 1.20 42.41 1.82
333 334 7.143514 TGCAGAAACTTTTTGCAGAAATTTT 57.856 28.000 15.11 15.11 42.41 1.82
384 385 4.787381 CACACATGTGTTTGACGTCTTA 57.213 40.909 28.64 1.67 42.83 2.10
444 454 3.199891 CGGTCCGGGAATTTCGCC 61.200 66.667 2.34 0.00 0.00 5.54
479 489 2.590092 GGCCATCCGCTTGTACCT 59.410 61.111 0.00 0.00 37.74 3.08
510 520 1.144503 AGCCAAGGATGCCCAGATTAG 59.855 52.381 0.00 0.00 33.88 1.73
512 522 2.856222 CCAAGGATGCCCAGATTAGAC 58.144 52.381 0.00 0.00 33.88 2.59
626 636 8.015185 TCTTTAGTGCGTAAAATAGGACCTAT 57.985 34.615 8.32 8.32 29.93 2.57
707 717 2.516460 CGAGATCGAGGGGTCCGT 60.516 66.667 0.00 0.00 43.02 4.69
763 773 6.507900 TGCATCGTTACCATTTTTGAAAAGA 58.492 32.000 0.00 0.00 0.00 2.52
768 778 6.970043 TCGTTACCATTTTTGAAAAGACACAG 59.030 34.615 0.00 0.00 0.00 3.66
778 788 5.570234 TGAAAAGACACAGGTTACCAAAC 57.430 39.130 3.51 0.00 34.66 2.93
791 819 0.757188 ACCAAACCCAAATCCACGCA 60.757 50.000 0.00 0.00 0.00 5.24
829 857 1.079503 GTCTGACTTGGCCGAACATC 58.920 55.000 0.00 0.00 0.00 3.06
841 869 0.957395 CGAACATCTTGGCAGGCTGT 60.957 55.000 17.16 0.00 0.00 4.40
849 877 0.895100 TTGGCAGGCTGTTGGATGAC 60.895 55.000 17.16 0.00 0.00 3.06
853 881 1.883638 GCAGGCTGTTGGATGACAAGA 60.884 52.381 17.16 0.00 40.38 3.02
858 886 2.440409 CTGTTGGATGACAAGAAGGGG 58.560 52.381 0.00 0.00 40.38 4.79
869 897 2.105821 ACAAGAAGGGGTTCGATGTCAA 59.894 45.455 0.00 0.00 0.00 3.18
895 924 0.178876 TGTTGGGGGAGAGACCATCA 60.179 55.000 0.00 0.00 41.20 3.07
942 971 1.067776 CGGTCGCCTGTTCTAAGAGTT 60.068 52.381 0.00 0.00 0.00 3.01
1058 1090 8.806429 TTCATTTATACTGATTCTTTGCCTCA 57.194 30.769 0.00 0.00 0.00 3.86
1086 1118 1.081174 AGGGACCTTGAGGGAGATGAA 59.919 52.381 1.54 0.00 40.27 2.57
1113 1145 2.552031 GAGATGGTCCGGCTTTTACTC 58.448 52.381 0.00 0.00 0.00 2.59
1143 1175 2.369860 GGACAGATATGCCATGGACAGA 59.630 50.000 18.40 11.00 0.00 3.41
1155 1187 3.452264 CCATGGACAGACTCAAGATGGTA 59.548 47.826 5.56 0.00 0.00 3.25
1295 1333 4.648651 TCAGATGACAATGCTATGGATGG 58.351 43.478 0.00 0.00 0.00 3.51
1358 1396 2.311463 CCCATCTCTCATAGTGGACGT 58.689 52.381 0.00 0.00 31.61 4.34
1498 1558 4.816925 GCTTAGTGCTAAATGGACCTAAGG 59.183 45.833 0.00 0.00 37.77 2.69
1512 1572 8.917414 ATGGACCTAAGGATAGCTATATCAAA 57.083 34.615 6.13 0.00 39.76 2.69
1547 1608 7.672983 TTGAATGATGTGAAAGTTCTCCTAC 57.327 36.000 0.00 0.00 0.00 3.18
1596 1665 4.678622 TGTTGATTTTATCTCGAGCGCTA 58.321 39.130 11.50 0.00 0.00 4.26
1619 1688 1.724581 GCAACCGCGTAACACTTGC 60.725 57.895 4.92 4.35 0.00 4.01
1663 1743 3.316029 CCTTCTTGTGTGTGCAATCTTCA 59.684 43.478 0.00 0.00 0.00 3.02
1721 1801 6.239232 GCAATCAATTCTATGATGGCCTTTCT 60.239 38.462 3.32 0.00 46.63 2.52
1818 1899 3.969995 TTTTTACGCAAACAGCCCC 57.030 47.368 0.00 0.00 41.38 5.80
1819 1900 1.112113 TTTTTACGCAAACAGCCCCA 58.888 45.000 0.00 0.00 41.38 4.96
1837 1918 5.246981 CCCCAAATGGCTAGATCTCAATA 57.753 43.478 0.00 0.00 0.00 1.90
1880 1961 5.918608 TGCCTTGAAGTAGGATAGAATGAC 58.081 41.667 0.00 0.00 37.50 3.06
1891 1972 2.203800 TAGAATGACCGCGTGCTAAG 57.796 50.000 4.92 0.00 0.00 2.18
1947 2033 2.368875 AGACTACAAGGGTCACAACTGG 59.631 50.000 0.00 0.00 36.29 4.00
1954 2040 1.518903 GGGTCACAACTGGCTCTTGC 61.519 60.000 0.00 0.00 38.76 4.01
1957 2043 1.610522 GTCACAACTGGCTCTTGCATT 59.389 47.619 0.00 0.00 41.91 3.56
1965 2051 1.712977 GGCTCTTGCATTGAGGCGAG 61.713 60.000 21.58 0.00 44.84 5.03
1966 2052 1.712977 GCTCTTGCATTGAGGCGAGG 61.713 60.000 15.91 0.00 44.01 4.63
1988 2074 7.013823 AGGATCGATGATATTGGAAGTTGAT 57.986 36.000 0.54 0.00 0.00 2.57
1998 2084 4.734398 TTGGAAGTTGATGTGTGCTTTT 57.266 36.364 0.00 0.00 0.00 2.27
2003 2089 2.549754 AGTTGATGTGTGCTTTTCCTCG 59.450 45.455 0.00 0.00 0.00 4.63
2012 2098 0.799393 GCTTTTCCTCGCCACTCTTC 59.201 55.000 0.00 0.00 0.00 2.87
2058 2145 7.648142 TGTTGGTGTCAATTTTTAGAGATGTC 58.352 34.615 0.00 0.00 35.10 3.06
2061 2148 5.163754 GGTGTCAATTTTTAGAGATGTCGGG 60.164 44.000 0.00 0.00 0.00 5.14
2062 2149 4.941263 TGTCAATTTTTAGAGATGTCGGGG 59.059 41.667 0.00 0.00 0.00 5.73
2068 2155 5.943349 TTTTAGAGATGTCGGGGTTATCA 57.057 39.130 0.00 0.00 0.00 2.15
2071 2158 3.309296 AGAGATGTCGGGGTTATCATGT 58.691 45.455 0.00 0.00 0.00 3.21
2079 2167 3.775866 TCGGGGTTATCATGTGGAAAGTA 59.224 43.478 0.00 0.00 0.00 2.24
2088 2176 1.448985 TGTGGAAAGTAGAATGCCGC 58.551 50.000 0.00 0.00 0.00 6.53
2107 2195 2.883828 CGGTGCAACAGACCCCTCT 61.884 63.158 0.98 0.00 39.98 3.69
2113 2201 1.072331 GCAACAGACCCCTCTCTTCAA 59.928 52.381 0.00 0.00 0.00 2.69
2128 2216 6.478344 CCTCTCTTCAATGTGCAAGTAGTATC 59.522 42.308 0.00 0.00 0.00 2.24
2129 2217 7.175347 TCTCTTCAATGTGCAAGTAGTATCT 57.825 36.000 0.00 0.00 0.00 1.98
2133 2221 7.492669 TCTTCAATGTGCAAGTAGTATCTTAGC 59.507 37.037 0.00 0.00 0.00 3.09
2154 2242 2.904866 CCCACACACCCACAACGG 60.905 66.667 0.00 0.00 0.00 4.44
2168 2256 3.242252 CCACAACGGCAACAAAAATTGAC 60.242 43.478 0.00 0.00 33.92 3.18
2174 2262 3.730715 CGGCAACAAAAATTGACAGAGAC 59.269 43.478 0.00 0.00 37.46 3.36
2178 2266 5.276536 GCAACAAAAATTGACAGAGACAAGC 60.277 40.000 0.00 0.00 0.00 4.01
2180 2268 5.825507 ACAAAAATTGACAGAGACAAGCTC 58.174 37.500 0.00 0.00 44.29 4.09
2192 2280 4.021925 AAGCTCTGCCCCCGTCAC 62.022 66.667 0.00 0.00 0.00 3.67
2212 2300 2.108157 ACGCGTTGGTTGCAGAGA 59.892 55.556 5.58 0.00 0.00 3.10
2240 2328 2.109774 CCATGCCCCAATAACACACAT 58.890 47.619 0.00 0.00 0.00 3.21
2246 2334 3.317993 GCCCCAATAACACACATCATACC 59.682 47.826 0.00 0.00 0.00 2.73
2302 5854 2.827322 ACGCCACACATACCTACAAGTA 59.173 45.455 0.00 0.00 0.00 2.24
2338 5890 4.427312 ACATAACCGAATCGACCACTTAC 58.573 43.478 3.36 0.00 0.00 2.34
2342 5894 2.758979 ACCGAATCGACCACTTACATCT 59.241 45.455 3.36 0.00 0.00 2.90
2357 5909 3.292481 ATCTGGGCCCCAAGCAGTG 62.292 63.158 22.27 0.00 46.50 3.66
2391 5943 1.880819 GCACCACAAGGCTCCCATTG 61.881 60.000 0.00 0.00 39.06 2.82
2392 5944 1.077265 ACCACAAGGCTCCCATTGG 59.923 57.895 0.00 0.00 39.06 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.918810 AGAGATGGTTTTGTTCGCTTTT 57.081 36.364 0.00 0.00 0.00 2.27
3 4 4.918810 AAGAGATGGTTTTGTTCGCTTT 57.081 36.364 0.00 0.00 0.00 3.51
4 5 4.918810 AAAGAGATGGTTTTGTTCGCTT 57.081 36.364 0.00 0.00 32.00 4.68
5 6 5.940470 AGATAAAGAGATGGTTTTGTTCGCT 59.060 36.000 0.00 0.00 0.00 4.93
6 7 6.092807 AGAGATAAAGAGATGGTTTTGTTCGC 59.907 38.462 0.00 0.00 0.00 4.70
7 8 7.602517 AGAGATAAAGAGATGGTTTTGTTCG 57.397 36.000 0.00 0.00 0.00 3.95
10 11 9.660180 GAGTTAGAGATAAAGAGATGGTTTTGT 57.340 33.333 0.00 0.00 0.00 2.83
11 12 9.103861 GGAGTTAGAGATAAAGAGATGGTTTTG 57.896 37.037 0.00 0.00 0.00 2.44
12 13 8.268605 GGGAGTTAGAGATAAAGAGATGGTTTT 58.731 37.037 0.00 0.00 0.00 2.43
13 14 7.418025 CGGGAGTTAGAGATAAAGAGATGGTTT 60.418 40.741 0.00 0.00 0.00 3.27
14 15 6.041069 CGGGAGTTAGAGATAAAGAGATGGTT 59.959 42.308 0.00 0.00 0.00 3.67
15 16 5.536916 CGGGAGTTAGAGATAAAGAGATGGT 59.463 44.000 0.00 0.00 0.00 3.55
16 17 5.770663 TCGGGAGTTAGAGATAAAGAGATGG 59.229 44.000 0.00 0.00 0.00 3.51
17 18 6.294286 GGTCGGGAGTTAGAGATAAAGAGATG 60.294 46.154 0.00 0.00 0.00 2.90
18 19 5.771165 GGTCGGGAGTTAGAGATAAAGAGAT 59.229 44.000 0.00 0.00 0.00 2.75
19 20 5.131784 GGTCGGGAGTTAGAGATAAAGAGA 58.868 45.833 0.00 0.00 0.00 3.10
20 21 4.888239 TGGTCGGGAGTTAGAGATAAAGAG 59.112 45.833 0.00 0.00 0.00 2.85
21 22 4.863548 TGGTCGGGAGTTAGAGATAAAGA 58.136 43.478 0.00 0.00 0.00 2.52
22 23 5.593679 TTGGTCGGGAGTTAGAGATAAAG 57.406 43.478 0.00 0.00 0.00 1.85
23 24 5.246656 TGTTTGGTCGGGAGTTAGAGATAAA 59.753 40.000 0.00 0.00 0.00 1.40
24 25 4.773674 TGTTTGGTCGGGAGTTAGAGATAA 59.226 41.667 0.00 0.00 0.00 1.75
25 26 4.346730 TGTTTGGTCGGGAGTTAGAGATA 58.653 43.478 0.00 0.00 0.00 1.98
26 27 3.170717 TGTTTGGTCGGGAGTTAGAGAT 58.829 45.455 0.00 0.00 0.00 2.75
27 28 2.600790 TGTTTGGTCGGGAGTTAGAGA 58.399 47.619 0.00 0.00 0.00 3.10
28 29 3.396260 TTGTTTGGTCGGGAGTTAGAG 57.604 47.619 0.00 0.00 0.00 2.43
29 30 4.360951 AATTGTTTGGTCGGGAGTTAGA 57.639 40.909 0.00 0.00 0.00 2.10
30 31 5.106436 GGTTAATTGTTTGGTCGGGAGTTAG 60.106 44.000 0.00 0.00 0.00 2.34
31 32 4.761227 GGTTAATTGTTTGGTCGGGAGTTA 59.239 41.667 0.00 0.00 0.00 2.24
32 33 3.570975 GGTTAATTGTTTGGTCGGGAGTT 59.429 43.478 0.00 0.00 0.00 3.01
33 34 3.151554 GGTTAATTGTTTGGTCGGGAGT 58.848 45.455 0.00 0.00 0.00 3.85
34 35 3.190535 CAGGTTAATTGTTTGGTCGGGAG 59.809 47.826 0.00 0.00 0.00 4.30
35 36 3.150767 CAGGTTAATTGTTTGGTCGGGA 58.849 45.455 0.00 0.00 0.00 5.14
36 37 3.150767 TCAGGTTAATTGTTTGGTCGGG 58.849 45.455 0.00 0.00 0.00 5.14
37 38 4.457603 TGATCAGGTTAATTGTTTGGTCGG 59.542 41.667 0.00 0.00 0.00 4.79
38 39 5.049060 TGTGATCAGGTTAATTGTTTGGTCG 60.049 40.000 0.00 0.00 0.00 4.79
39 40 6.325919 TGTGATCAGGTTAATTGTTTGGTC 57.674 37.500 0.00 0.00 0.00 4.02
40 41 6.493115 TCATGTGATCAGGTTAATTGTTTGGT 59.507 34.615 0.00 0.00 0.00 3.67
41 42 6.923012 TCATGTGATCAGGTTAATTGTTTGG 58.077 36.000 0.00 0.00 0.00 3.28
42 43 8.991243 AATCATGTGATCAGGTTAATTGTTTG 57.009 30.769 0.00 0.00 32.75 2.93
77 78 8.139350 GGCTTTGTTGTTGTTTTATAGTACCTT 58.861 33.333 0.00 0.00 0.00 3.50
78 79 7.504574 AGGCTTTGTTGTTGTTTTATAGTACCT 59.495 33.333 0.00 0.00 0.00 3.08
79 80 7.654568 AGGCTTTGTTGTTGTTTTATAGTACC 58.345 34.615 0.00 0.00 0.00 3.34
80 81 9.524106 AAAGGCTTTGTTGTTGTTTTATAGTAC 57.476 29.630 12.53 0.00 0.00 2.73
89 90 9.606631 TCATTATTTAAAGGCTTTGTTGTTGTT 57.393 25.926 22.32 0.00 0.00 2.83
90 91 9.260002 CTCATTATTTAAAGGCTTTGTTGTTGT 57.740 29.630 22.32 4.32 0.00 3.32
91 92 8.711457 CCTCATTATTTAAAGGCTTTGTTGTTG 58.289 33.333 22.32 12.15 0.00 3.33
92 93 8.831715 CCTCATTATTTAAAGGCTTTGTTGTT 57.168 30.769 22.32 5.53 0.00 2.83
102 103 6.373779 CGTAGCATGCCTCATTATTTAAAGG 58.626 40.000 15.66 0.00 0.00 3.11
122 123 1.582502 GATCTTTTGACGGACGCGTAG 59.417 52.381 13.97 12.72 0.00 3.51
123 124 1.068402 TGATCTTTTGACGGACGCGTA 60.068 47.619 13.97 0.00 0.00 4.42
124 125 0.319211 TGATCTTTTGACGGACGCGT 60.319 50.000 13.85 13.85 0.00 6.01
125 126 0.787787 TTGATCTTTTGACGGACGCG 59.212 50.000 3.53 3.53 0.00 6.01
126 127 1.136057 GGTTGATCTTTTGACGGACGC 60.136 52.381 0.00 0.00 0.00 5.19
127 128 1.126113 CGGTTGATCTTTTGACGGACG 59.874 52.381 0.00 0.00 0.00 4.79
128 129 1.463444 CCGGTTGATCTTTTGACGGAC 59.537 52.381 0.00 0.00 42.19 4.79
129 130 1.609580 CCCGGTTGATCTTTTGACGGA 60.610 52.381 0.00 0.00 42.19 4.69
130 131 0.802494 CCCGGTTGATCTTTTGACGG 59.198 55.000 0.00 0.00 39.54 4.79
131 132 1.463444 GACCCGGTTGATCTTTTGACG 59.537 52.381 0.00 0.00 0.00 4.35
132 133 2.500229 TGACCCGGTTGATCTTTTGAC 58.500 47.619 0.00 0.00 0.00 3.18
133 134 2.940994 TGACCCGGTTGATCTTTTGA 57.059 45.000 0.00 0.00 0.00 2.69
134 135 3.081061 TCATGACCCGGTTGATCTTTTG 58.919 45.455 0.00 0.00 0.00 2.44
135 136 3.347216 CTCATGACCCGGTTGATCTTTT 58.653 45.455 0.00 0.00 0.00 2.27
136 137 2.941415 GCTCATGACCCGGTTGATCTTT 60.941 50.000 0.00 0.00 0.00 2.52
137 138 1.407437 GCTCATGACCCGGTTGATCTT 60.407 52.381 0.00 0.00 0.00 2.40
138 139 0.179000 GCTCATGACCCGGTTGATCT 59.821 55.000 0.00 0.00 0.00 2.75
139 140 0.815615 GGCTCATGACCCGGTTGATC 60.816 60.000 0.00 0.00 0.00 2.92
140 141 1.224592 GGCTCATGACCCGGTTGAT 59.775 57.895 0.00 0.00 0.00 2.57
141 142 1.561769 ATGGCTCATGACCCGGTTGA 61.562 55.000 0.00 0.00 0.00 3.18
142 143 1.077501 ATGGCTCATGACCCGGTTG 60.078 57.895 0.00 0.00 0.00 3.77
143 144 1.224592 GATGGCTCATGACCCGGTT 59.775 57.895 0.00 0.00 0.00 4.44
144 145 1.976132 CTGATGGCTCATGACCCGGT 61.976 60.000 0.00 0.00 0.00 5.28
145 146 1.227764 CTGATGGCTCATGACCCGG 60.228 63.158 2.59 0.00 0.00 5.73
146 147 0.395686 ATCTGATGGCTCATGACCCG 59.604 55.000 2.59 0.00 0.00 5.28
147 148 1.698532 AGATCTGATGGCTCATGACCC 59.301 52.381 0.00 0.00 0.00 4.46
148 149 2.367894 TCAGATCTGATGGCTCATGACC 59.632 50.000 21.67 0.00 34.14 4.02
149 150 3.747854 TCAGATCTGATGGCTCATGAC 57.252 47.619 21.67 0.00 34.14 3.06
150 151 3.710165 ACTTCAGATCTGATGGCTCATGA 59.290 43.478 31.14 13.60 39.64 3.07
151 152 4.074627 ACTTCAGATCTGATGGCTCATG 57.925 45.455 31.14 13.83 39.64 3.07
152 153 4.774660 AACTTCAGATCTGATGGCTCAT 57.225 40.909 31.14 15.04 39.64 2.90
153 154 5.364735 TGATAACTTCAGATCTGATGGCTCA 59.635 40.000 31.14 26.22 39.64 4.26
154 155 5.851720 TGATAACTTCAGATCTGATGGCTC 58.148 41.667 31.14 24.70 39.64 4.70
155 156 5.883685 TGATAACTTCAGATCTGATGGCT 57.116 39.130 31.14 22.99 39.64 4.75
156 157 5.049543 GCTTGATAACTTCAGATCTGATGGC 60.050 44.000 31.14 22.24 39.64 4.40
157 158 5.177142 CGCTTGATAACTTCAGATCTGATGG 59.823 44.000 31.14 24.93 39.64 3.51
158 159 5.177142 CCGCTTGATAACTTCAGATCTGATG 59.823 44.000 28.18 28.18 39.64 3.07
159 160 5.295950 CCGCTTGATAACTTCAGATCTGAT 58.704 41.667 25.64 13.85 39.64 2.90
160 161 4.686972 CCGCTTGATAACTTCAGATCTGA 58.313 43.478 21.67 21.67 35.27 3.27
161 162 3.247173 GCCGCTTGATAACTTCAGATCTG 59.753 47.826 17.07 17.07 35.27 2.90
162 163 3.462021 GCCGCTTGATAACTTCAGATCT 58.538 45.455 0.00 0.00 35.27 2.75
163 164 2.545946 GGCCGCTTGATAACTTCAGATC 59.454 50.000 0.00 0.00 35.27 2.75
164 165 2.565841 GGCCGCTTGATAACTTCAGAT 58.434 47.619 0.00 0.00 35.27 2.90
165 166 1.739035 CGGCCGCTTGATAACTTCAGA 60.739 52.381 14.67 0.00 35.27 3.27
166 167 0.652592 CGGCCGCTTGATAACTTCAG 59.347 55.000 14.67 0.00 35.27 3.02
167 168 0.248012 TCGGCCGCTTGATAACTTCA 59.752 50.000 23.51 0.00 0.00 3.02
168 169 0.931005 CTCGGCCGCTTGATAACTTC 59.069 55.000 23.51 0.00 0.00 3.01
169 170 1.090052 GCTCGGCCGCTTGATAACTT 61.090 55.000 23.51 0.00 0.00 2.66
170 171 1.521681 GCTCGGCCGCTTGATAACT 60.522 57.895 23.51 0.00 0.00 2.24
171 172 2.871427 CGCTCGGCCGCTTGATAAC 61.871 63.158 23.51 0.00 0.00 1.89
172 173 2.584970 CGCTCGGCCGCTTGATAA 60.585 61.111 23.51 0.00 0.00 1.75
173 174 4.585526 CCGCTCGGCCGCTTGATA 62.586 66.667 23.51 0.00 0.00 2.15
188 189 3.372730 CAATGGTGGTGGGTGCCG 61.373 66.667 0.00 0.00 0.00 5.69
189 190 3.694538 GCAATGGTGGTGGGTGCC 61.695 66.667 0.00 0.00 0.00 5.01
190 191 2.506061 TTGCAATGGTGGTGGGTGC 61.506 57.895 0.00 0.00 35.75 5.01
191 192 1.367102 GTTGCAATGGTGGTGGGTG 59.633 57.895 0.59 0.00 0.00 4.61
192 193 0.689080 TTGTTGCAATGGTGGTGGGT 60.689 50.000 0.59 0.00 0.00 4.51
193 194 0.467384 TTTGTTGCAATGGTGGTGGG 59.533 50.000 0.59 0.00 0.00 4.61
194 195 1.138661 AGTTTGTTGCAATGGTGGTGG 59.861 47.619 0.59 0.00 0.00 4.61
195 196 2.600470 AGTTTGTTGCAATGGTGGTG 57.400 45.000 0.59 0.00 0.00 4.17
196 197 2.765699 AGAAGTTTGTTGCAATGGTGGT 59.234 40.909 0.59 0.00 0.00 4.16
197 198 3.457610 AGAAGTTTGTTGCAATGGTGG 57.542 42.857 0.59 0.00 0.00 4.61
198 199 4.183101 ACAAGAAGTTTGTTGCAATGGTG 58.817 39.130 0.59 0.00 35.08 4.17
199 200 4.470334 ACAAGAAGTTTGTTGCAATGGT 57.530 36.364 0.59 0.00 35.08 3.55
207 208 3.859411 TTCCGCAACAAGAAGTTTGTT 57.141 38.095 0.00 0.00 42.75 2.83
208 209 3.859411 TTTCCGCAACAAGAAGTTTGT 57.141 38.095 0.00 0.00 38.74 2.83
209 210 4.358851 TGATTTCCGCAACAAGAAGTTTG 58.641 39.130 0.00 0.00 38.74 2.93
210 211 4.647424 TGATTTCCGCAACAAGAAGTTT 57.353 36.364 0.00 0.00 38.74 2.66
211 212 4.853924 ATGATTTCCGCAACAAGAAGTT 57.146 36.364 0.00 0.00 42.42 2.66
212 213 4.549458 CAATGATTTCCGCAACAAGAAGT 58.451 39.130 0.00 0.00 0.00 3.01
213 214 3.365820 GCAATGATTTCCGCAACAAGAAG 59.634 43.478 0.00 0.00 0.00 2.85
214 215 3.243670 TGCAATGATTTCCGCAACAAGAA 60.244 39.130 0.00 0.00 0.00 2.52
215 216 2.295629 TGCAATGATTTCCGCAACAAGA 59.704 40.909 0.00 0.00 0.00 3.02
216 217 2.674954 TGCAATGATTTCCGCAACAAG 58.325 42.857 0.00 0.00 0.00 3.16
217 218 2.808523 TGCAATGATTTCCGCAACAA 57.191 40.000 0.00 0.00 0.00 2.83
218 219 2.808523 TTGCAATGATTTCCGCAACA 57.191 40.000 0.00 0.00 39.32 3.33
220 221 2.295629 TCAGTTGCAATGATTTCCGCAA 59.704 40.909 0.59 0.00 41.79 4.85
221 222 1.885233 TCAGTTGCAATGATTTCCGCA 59.115 42.857 0.59 0.00 0.00 5.69
222 223 2.162208 TCTCAGTTGCAATGATTTCCGC 59.838 45.455 0.59 0.00 0.00 5.54
223 224 4.627611 ATCTCAGTTGCAATGATTTCCG 57.372 40.909 0.59 0.00 0.00 4.30
224 225 6.647895 ACAAAATCTCAGTTGCAATGATTTCC 59.352 34.615 21.36 3.84 36.65 3.13
225 226 7.647907 ACAAAATCTCAGTTGCAATGATTTC 57.352 32.000 21.36 4.41 36.65 2.17
226 227 7.857569 CAACAAAATCTCAGTTGCAATGATTT 58.142 30.769 18.25 18.25 38.49 2.17
227 228 7.416154 CAACAAAATCTCAGTTGCAATGATT 57.584 32.000 0.59 8.09 36.59 2.57
235 236 5.232838 GGTTTCTGCAACAAAATCTCAGTTG 59.767 40.000 0.00 0.00 44.01 3.16
236 237 5.127682 AGGTTTCTGCAACAAAATCTCAGTT 59.872 36.000 0.00 0.00 37.07 3.16
237 238 4.646492 AGGTTTCTGCAACAAAATCTCAGT 59.354 37.500 0.00 0.00 37.07 3.41
238 239 5.192327 AGGTTTCTGCAACAAAATCTCAG 57.808 39.130 0.00 0.00 37.07 3.35
239 240 5.596836 AAGGTTTCTGCAACAAAATCTCA 57.403 34.783 3.03 0.00 37.07 3.27
240 241 5.277011 GCAAAGGTTTCTGCAACAAAATCTC 60.277 40.000 3.03 0.00 38.48 2.75
241 242 4.571984 GCAAAGGTTTCTGCAACAAAATCT 59.428 37.500 0.00 0.00 38.48 2.40
242 243 4.332268 TGCAAAGGTTTCTGCAACAAAATC 59.668 37.500 0.00 0.00 45.25 2.17
243 244 4.260170 TGCAAAGGTTTCTGCAACAAAAT 58.740 34.783 0.00 0.00 45.25 1.82
244 245 3.668447 TGCAAAGGTTTCTGCAACAAAA 58.332 36.364 0.00 0.00 45.25 2.44
245 246 3.325293 TGCAAAGGTTTCTGCAACAAA 57.675 38.095 0.00 0.00 45.25 2.83
250 251 3.325293 TTTGTTGCAAAGGTTTCTGCA 57.675 38.095 0.00 0.00 46.50 4.41
251 252 3.684305 ACTTTTGTTGCAAAGGTTTCTGC 59.316 39.130 0.00 0.00 39.09 4.26
252 253 4.928615 TGACTTTTGTTGCAAAGGTTTCTG 59.071 37.500 0.00 0.00 0.00 3.02
253 254 5.146010 TGACTTTTGTTGCAAAGGTTTCT 57.854 34.783 0.00 0.00 0.00 2.52
254 255 5.351189 ACATGACTTTTGTTGCAAAGGTTTC 59.649 36.000 0.00 0.00 0.00 2.78
255 256 5.244755 ACATGACTTTTGTTGCAAAGGTTT 58.755 33.333 0.00 0.97 0.00 3.27
256 257 4.831107 ACATGACTTTTGTTGCAAAGGTT 58.169 34.783 0.00 0.00 0.00 3.50
257 258 4.470334 ACATGACTTTTGTTGCAAAGGT 57.530 36.364 0.00 8.70 0.00 3.50
258 259 5.146482 CAACATGACTTTTGTTGCAAAGG 57.854 39.130 0.00 2.83 45.10 3.11
265 266 6.207691 AGTTACTGCAACATGACTTTTGTT 57.792 33.333 0.00 0.00 39.81 2.83
266 267 5.835113 AGTTACTGCAACATGACTTTTGT 57.165 34.783 0.00 0.00 39.81 2.83
267 268 7.524294 AAAAGTTACTGCAACATGACTTTTG 57.476 32.000 18.93 3.78 42.41 2.44
268 269 7.412891 GCAAAAAGTTACTGCAACATGACTTTT 60.413 33.333 16.08 16.08 44.51 2.27
269 270 6.035975 GCAAAAAGTTACTGCAACATGACTTT 59.964 34.615 0.00 8.52 39.81 2.66
270 271 5.519927 GCAAAAAGTTACTGCAACATGACTT 59.480 36.000 0.00 0.00 39.81 3.01
271 272 5.043248 GCAAAAAGTTACTGCAACATGACT 58.957 37.500 0.00 0.00 39.81 3.41
272 273 4.803088 TGCAAAAAGTTACTGCAACATGAC 59.197 37.500 0.00 0.00 42.84 3.06
273 274 5.003692 TGCAAAAAGTTACTGCAACATGA 57.996 34.783 0.00 0.00 42.84 3.07
279 280 4.629200 CCTTTGTTGCAAAAAGTTACTGCA 59.371 37.500 21.75 7.52 44.04 4.41
280 281 4.629634 ACCTTTGTTGCAAAAAGTTACTGC 59.370 37.500 21.75 2.81 33.61 4.40
281 282 5.866633 TGACCTTTGTTGCAAAAAGTTACTG 59.133 36.000 21.75 13.89 33.61 2.74
282 283 6.031751 TGACCTTTGTTGCAAAAAGTTACT 57.968 33.333 21.75 9.68 33.61 2.24
283 284 6.704819 CATGACCTTTGTTGCAAAAAGTTAC 58.295 36.000 21.75 15.95 33.61 2.50
284 285 5.293079 GCATGACCTTTGTTGCAAAAAGTTA 59.707 36.000 21.75 9.66 33.61 2.24
285 286 4.094739 GCATGACCTTTGTTGCAAAAAGTT 59.905 37.500 21.75 14.20 33.61 2.66
286 287 3.622612 GCATGACCTTTGTTGCAAAAAGT 59.377 39.130 21.75 11.69 33.61 2.66
287 288 3.872771 AGCATGACCTTTGTTGCAAAAAG 59.127 39.130 19.00 19.00 37.56 2.27
288 289 3.622163 CAGCATGACCTTTGTTGCAAAAA 59.378 39.130 0.00 0.00 39.69 1.94
289 290 3.196463 CAGCATGACCTTTGTTGCAAAA 58.804 40.909 0.00 0.00 39.69 2.44
290 291 2.823984 CAGCATGACCTTTGTTGCAAA 58.176 42.857 0.00 0.00 39.69 3.68
291 292 1.538634 GCAGCATGACCTTTGTTGCAA 60.539 47.619 0.00 0.00 46.61 4.08
292 293 0.032403 GCAGCATGACCTTTGTTGCA 59.968 50.000 0.00 0.00 46.61 4.08
293 294 2.818350 GCAGCATGACCTTTGTTGC 58.182 52.632 0.00 0.00 42.63 4.17
294 295 1.610038 TCTGCAGCATGACCTTTGTTG 59.390 47.619 9.47 0.00 39.69 3.33
295 296 1.985473 TCTGCAGCATGACCTTTGTT 58.015 45.000 9.47 0.00 39.69 2.83
296 297 1.985473 TTCTGCAGCATGACCTTTGT 58.015 45.000 9.47 0.00 39.69 2.83
297 298 2.295349 AGTTTCTGCAGCATGACCTTTG 59.705 45.455 9.47 0.00 39.69 2.77
298 299 2.590821 AGTTTCTGCAGCATGACCTTT 58.409 42.857 9.47 0.00 39.69 3.11
299 300 2.283145 AGTTTCTGCAGCATGACCTT 57.717 45.000 9.47 0.00 39.69 3.50
300 301 2.283145 AAGTTTCTGCAGCATGACCT 57.717 45.000 9.47 0.00 39.69 3.85
301 302 3.375782 AAAAGTTTCTGCAGCATGACC 57.624 42.857 9.47 0.00 39.69 4.02
302 303 3.060070 GCAAAAAGTTTCTGCAGCATGAC 60.060 43.478 9.47 4.72 39.69 3.06
303 304 3.125316 GCAAAAAGTTTCTGCAGCATGA 58.875 40.909 9.47 0.00 39.69 3.07
304 305 2.867368 TGCAAAAAGTTTCTGCAGCATG 59.133 40.909 12.55 0.00 41.01 4.06
305 306 3.182341 TGCAAAAAGTTTCTGCAGCAT 57.818 38.095 12.55 0.00 41.01 3.79
306 307 2.669300 TGCAAAAAGTTTCTGCAGCA 57.331 40.000 12.55 0.00 41.01 4.41
309 310 6.740411 AAATTTCTGCAAAAAGTTTCTGCA 57.260 29.167 15.51 15.51 43.54 4.41
310 311 7.218773 GGAAAAATTTCTGCAAAAAGTTTCTGC 59.781 33.333 10.97 6.97 35.92 4.26
311 312 8.235905 TGGAAAAATTTCTGCAAAAAGTTTCTG 58.764 29.630 10.97 0.00 35.92 3.02
312 313 8.236586 GTGGAAAAATTTCTGCAAAAAGTTTCT 58.763 29.630 10.97 2.94 35.92 2.52
313 314 8.020244 TGTGGAAAAATTTCTGCAAAAAGTTTC 58.980 29.630 10.97 11.97 35.92 2.78
314 315 7.880105 TGTGGAAAAATTTCTGCAAAAAGTTT 58.120 26.923 5.16 5.16 37.85 2.66
315 316 7.446001 TGTGGAAAAATTTCTGCAAAAAGTT 57.554 28.000 5.91 0.00 37.35 2.66
316 317 7.474190 CATGTGGAAAAATTTCTGCAAAAAGT 58.526 30.769 5.91 0.00 37.35 2.66
317 318 6.415573 GCATGTGGAAAAATTTCTGCAAAAAG 59.584 34.615 10.96 0.00 37.35 2.27
318 319 6.127814 TGCATGTGGAAAAATTTCTGCAAAAA 60.128 30.769 14.40 0.00 35.63 1.94
319 320 5.356190 TGCATGTGGAAAAATTTCTGCAAAA 59.644 32.000 14.40 0.00 35.63 2.44
320 321 4.880120 TGCATGTGGAAAAATTTCTGCAAA 59.120 33.333 14.40 0.00 35.63 3.68
321 322 4.272991 GTGCATGTGGAAAAATTTCTGCAA 59.727 37.500 16.95 4.91 39.77 4.08
322 323 3.808726 GTGCATGTGGAAAAATTTCTGCA 59.191 39.130 13.34 13.34 37.35 4.41
323 324 3.808726 TGTGCATGTGGAAAAATTTCTGC 59.191 39.130 5.91 8.00 37.35 4.26
324 325 5.556758 CGTTGTGCATGTGGAAAAATTTCTG 60.557 40.000 5.91 0.00 37.35 3.02
325 326 4.507388 CGTTGTGCATGTGGAAAAATTTCT 59.493 37.500 5.91 0.00 37.35 2.52
326 327 4.318689 CCGTTGTGCATGTGGAAAAATTTC 60.319 41.667 0.00 0.00 36.46 2.17
327 328 3.559242 CCGTTGTGCATGTGGAAAAATTT 59.441 39.130 0.00 0.00 0.00 1.82
328 329 3.129871 CCGTTGTGCATGTGGAAAAATT 58.870 40.909 0.00 0.00 0.00 1.82
329 330 2.363680 TCCGTTGTGCATGTGGAAAAAT 59.636 40.909 0.00 0.00 0.00 1.82
330 331 1.751351 TCCGTTGTGCATGTGGAAAAA 59.249 42.857 0.00 0.00 0.00 1.94
331 332 1.336440 CTCCGTTGTGCATGTGGAAAA 59.664 47.619 0.00 0.00 0.00 2.29
332 333 0.950836 CTCCGTTGTGCATGTGGAAA 59.049 50.000 0.00 0.00 0.00 3.13
333 334 0.888736 CCTCCGTTGTGCATGTGGAA 60.889 55.000 0.00 0.00 0.00 3.53
384 385 0.326264 CCCTGAGCTTGCTGTAACCT 59.674 55.000 0.00 0.00 0.00 3.50
456 466 3.329889 AAGCGGATGGCCCAGTCA 61.330 61.111 0.00 0.00 45.17 3.41
479 489 0.776810 TCCTTGGCTGTTTCCATCCA 59.223 50.000 0.00 0.00 35.11 3.41
493 503 2.441001 AGGTCTAATCTGGGCATCCTTG 59.559 50.000 0.00 0.00 0.00 3.61
510 520 7.268586 TCATAAGCTCAAGATAAACTGAGGTC 58.731 38.462 4.43 0.00 35.33 3.85
512 522 6.202570 GCTCATAAGCTCAAGATAAACTGAGG 59.797 42.308 0.00 0.00 45.55 3.86
564 574 1.174783 TGTCGACTAGCCTCAGTTCC 58.825 55.000 17.92 0.00 0.00 3.62
626 636 4.946772 TGGTATCAGCGGAATTGAAAATCA 59.053 37.500 0.00 0.00 0.00 2.57
707 717 1.134521 GGCGATCATCCTTGTGGTACA 60.135 52.381 0.00 0.00 34.23 2.90
750 760 7.038659 TGGTAACCTGTGTCTTTTCAAAAATG 58.961 34.615 0.00 0.00 0.00 2.32
778 788 2.336667 GATTTTGTGCGTGGATTTGGG 58.663 47.619 0.00 0.00 0.00 4.12
786 805 0.976963 GCATGTCGATTTTGTGCGTG 59.023 50.000 0.00 0.00 0.00 5.34
787 806 0.109781 GGCATGTCGATTTTGTGCGT 60.110 50.000 0.00 0.00 36.70 5.24
791 819 0.521291 CGGTGGCATGTCGATTTTGT 59.479 50.000 0.00 0.00 0.00 2.83
829 857 0.609957 TCATCCAACAGCCTGCCAAG 60.610 55.000 0.00 0.00 0.00 3.61
841 869 2.552155 CGAACCCCTTCTTGTCATCCAA 60.552 50.000 0.00 0.00 0.00 3.53
849 877 2.472695 TGACATCGAACCCCTTCTTG 57.527 50.000 0.00 0.00 0.00 3.02
853 881 3.761897 TGAAATTGACATCGAACCCCTT 58.238 40.909 0.00 0.00 0.00 3.95
869 897 3.564352 GGTCTCTCCCCCAACAATGAAAT 60.564 47.826 0.00 0.00 0.00 2.17
895 924 3.428045 GCAAGAATGAACCTATGCGCTTT 60.428 43.478 9.73 0.00 0.00 3.51
942 971 0.107361 TCATCGGTCCGTAGAGCTCA 60.107 55.000 17.77 0.00 38.41 4.26
1058 1090 4.431131 CAAGGTCCCTGGCGCCAT 62.431 66.667 32.87 11.68 0.00 4.40
1064 1096 0.327000 ATCTCCCTCAAGGTCCCTGG 60.327 60.000 0.00 0.00 36.75 4.45
1086 1118 1.178276 GCCGGACCATCTCGATATCT 58.822 55.000 5.05 0.00 0.00 1.98
1113 1145 1.068083 ATATCTGTCCGCAGCCACG 59.932 57.895 0.00 0.00 42.29 4.94
1174 1206 0.179000 GTGTCCGCATTCAGATCCCT 59.821 55.000 0.00 0.00 0.00 4.20
1175 1207 0.815615 GGTGTCCGCATTCAGATCCC 60.816 60.000 0.00 0.00 0.00 3.85
1203 1235 2.875296 TGGTCAGCTAAAGCCAATGTT 58.125 42.857 0.00 0.00 43.38 2.71
1295 1333 3.977244 CTTGGGTTGCCACCACGC 61.977 66.667 9.52 0.00 46.43 5.34
1358 1396 5.542779 GAAGCTTTCTTCTGTTCTCCAGTA 58.457 41.667 0.00 0.00 44.08 2.74
1509 1569 8.241367 TCACATCATTCAATCACTTGAGATTTG 58.759 33.333 0.00 0.00 42.19 2.32
1512 1572 7.933215 TTCACATCATTCAATCACTTGAGAT 57.067 32.000 0.00 0.00 42.19 2.75
1596 1665 2.667199 GTTACGCGGTTGCAGGGT 60.667 61.111 12.47 0.00 42.97 4.34
1608 1677 7.148639 TGCTAGAAATTAAGAGCAAGTGTTACG 60.149 37.037 0.00 0.00 41.78 3.18
1663 1743 6.845758 CCATATGGGTATCAAATGCTCAAT 57.154 37.500 14.52 0.00 0.00 2.57
1689 1769 7.754027 GCCATCATAGAATTGATTGCTAATGTC 59.246 37.037 3.93 0.00 40.07 3.06
1752 1833 8.164070 ACCTTGAGGATAGAATTTTTAGTGTGT 58.836 33.333 3.59 0.00 38.94 3.72
1753 1834 8.567285 ACCTTGAGGATAGAATTTTTAGTGTG 57.433 34.615 3.59 0.00 38.94 3.82
1880 1961 2.778679 GTCTTGCTTAGCACGCGG 59.221 61.111 12.47 0.00 38.71 6.46
1891 1972 0.868406 CCAACACCTTCTCGTCTTGC 59.132 55.000 0.00 0.00 0.00 4.01
1924 2010 4.322049 CCAGTTGTGACCCTTGTAGTCTAG 60.322 50.000 0.00 0.00 35.21 2.43
1947 2033 1.712977 CCTCGCCTCAATGCAAGAGC 61.713 60.000 12.66 8.30 42.57 4.09
1954 2040 1.000171 TCATCGATCCTCGCCTCAATG 60.000 52.381 0.00 0.00 40.21 2.82
1957 2043 2.200373 TATCATCGATCCTCGCCTCA 57.800 50.000 0.00 0.00 40.21 3.86
1965 2051 6.652481 ACATCAACTTCCAATATCATCGATCC 59.348 38.462 0.00 0.00 0.00 3.36
1966 2052 7.172190 ACACATCAACTTCCAATATCATCGATC 59.828 37.037 0.00 0.00 0.00 3.69
1970 2056 6.039047 AGCACACATCAACTTCCAATATCATC 59.961 38.462 0.00 0.00 0.00 2.92
1979 2065 3.319122 AGGAAAAGCACACATCAACTTCC 59.681 43.478 0.00 0.00 32.87 3.46
1988 2074 1.153066 TGGCGAGGAAAAGCACACA 60.153 52.632 0.00 0.00 34.54 3.72
1998 2084 0.319555 CAAACGAAGAGTGGCGAGGA 60.320 55.000 0.00 0.00 0.00 3.71
2012 2098 0.750249 AAAAAGGAGCCCCACAAACG 59.250 50.000 0.00 0.00 33.88 3.60
2058 2145 2.999331 ACTTTCCACATGATAACCCCG 58.001 47.619 0.00 0.00 0.00 5.73
2061 2148 6.238759 GGCATTCTACTTTCCACATGATAACC 60.239 42.308 0.00 0.00 0.00 2.85
2062 2149 6.511767 CGGCATTCTACTTTCCACATGATAAC 60.512 42.308 0.00 0.00 0.00 1.89
2068 2155 2.017049 GCGGCATTCTACTTTCCACAT 58.983 47.619 0.00 0.00 0.00 3.21
2071 2158 0.742990 CGGCGGCATTCTACTTTCCA 60.743 55.000 10.53 0.00 0.00 3.53
2088 2176 3.901797 GAGGGGTCTGTTGCACCGG 62.902 68.421 0.00 0.00 34.33 5.28
2103 2191 4.573900 ACTACTTGCACATTGAAGAGAGG 58.426 43.478 0.00 0.00 0.00 3.69
2107 2195 7.492669 GCTAAGATACTACTTGCACATTGAAGA 59.507 37.037 0.00 0.00 0.00 2.87
2113 2201 4.656112 AGGGCTAAGATACTACTTGCACAT 59.344 41.667 0.00 0.00 33.36 3.21
2128 2216 1.299976 GGTGTGTGGGAGGGCTAAG 59.700 63.158 0.00 0.00 0.00 2.18
2129 2217 2.228480 GGGTGTGTGGGAGGGCTAA 61.228 63.158 0.00 0.00 0.00 3.09
2133 2221 2.762554 TTGTGGGTGTGTGGGAGGG 61.763 63.158 0.00 0.00 0.00 4.30
2154 2242 5.276536 GCTTGTCTCTGTCAATTTTTGTTGC 60.277 40.000 0.00 0.00 0.00 4.17
2174 2262 4.020617 TGACGGGGGCAGAGCTTG 62.021 66.667 0.00 0.00 0.00 4.01
2178 2266 2.997315 TGAGTGACGGGGGCAGAG 60.997 66.667 0.00 0.00 0.00 3.35
2180 2268 4.742201 CGTGAGTGACGGGGGCAG 62.742 72.222 0.00 0.00 44.85 4.85
2192 2280 2.162921 CTCTGCAACCAACGCGTGAG 62.163 60.000 14.98 10.30 0.00 3.51
2193 2281 2.202946 TCTGCAACCAACGCGTGA 60.203 55.556 14.98 0.00 0.00 4.35
2199 2287 6.719495 ATGGTTAGTTGTCTCTGCAACCAAC 61.719 44.000 7.96 10.25 46.05 3.77
2212 2300 2.621556 ATTGGGGCATGGTTAGTTGT 57.378 45.000 0.00 0.00 0.00 3.32
2240 2328 2.708216 ATGTGTCGGCAATGGTATGA 57.292 45.000 0.00 0.00 0.00 2.15
2246 2334 0.027979 CGCCTTATGTGTCGGCAATG 59.972 55.000 0.00 0.00 43.95 2.82
2302 5854 2.711547 GGTTATGTAGGATCTTGGGCCT 59.288 50.000 4.53 0.00 38.31 5.19
2312 5864 3.067180 GTGGTCGATTCGGTTATGTAGGA 59.933 47.826 6.18 0.00 0.00 2.94
2322 5874 3.116300 CAGATGTAAGTGGTCGATTCGG 58.884 50.000 6.18 0.00 0.00 4.30
2338 5890 2.441532 CTGCTTGGGGCCCAGATG 60.442 66.667 27.05 20.07 40.92 2.90
2366 5918 1.614317 GGAGCCTTGTGGTGCATTAGT 60.614 52.381 0.00 0.00 35.27 2.24
2368 5920 0.323360 GGGAGCCTTGTGGTGCATTA 60.323 55.000 0.00 0.00 33.99 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.