Multiple sequence alignment - TraesCS5A01G443300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G443300 chr5A 100.000 3028 0 0 1 3028 623494674 623491647 0.000000e+00 5592.0
1 TraesCS5A01G443300 chr5A 93.724 239 13 2 2791 3028 623475681 623475444 1.030000e-94 357.0
2 TraesCS5A01G443300 chr5A 73.462 260 58 10 1297 1549 578956147 578956402 1.500000e-13 87.9
3 TraesCS5A01G443300 chr5D 90.733 2525 128 47 577 3028 499227310 499224819 0.000000e+00 3269.0
4 TraesCS5A01G443300 chr5D 92.887 239 15 2 2791 3028 499109862 499109625 2.230000e-91 346.0
5 TraesCS5A01G443300 chr5D 73.384 263 53 16 1297 1549 459340115 459340370 6.960000e-12 82.4
6 TraesCS5A01G443300 chr5B 93.059 2190 82 23 885 3028 619855603 619853438 0.000000e+00 3138.0
7 TraesCS5A01G443300 chr5B 88.703 239 25 2 2791 3028 619594068 619593831 1.060000e-74 291.0
8 TraesCS5A01G443300 chr5B 89.500 200 19 2 2830 3028 619763530 619763332 5.010000e-63 252.0
9 TraesCS5A01G443300 chr5B 82.653 294 28 13 577 853 619855961 619855674 3.900000e-59 239.0
10 TraesCS5A01G443300 chr5B 73.462 260 58 10 1297 1549 563605859 563606114 1.500000e-13 87.9
11 TraesCS5A01G443300 chr7D 90.977 133 12 0 2767 2899 617087964 617088096 2.400000e-41 180.0
12 TraesCS5A01G443300 chr7B 90.977 133 12 0 2767 2899 711453994 711454126 2.400000e-41 180.0
13 TraesCS5A01G443300 chr7A 80.498 241 28 10 2767 2991 709965805 709966042 1.870000e-37 167.0
14 TraesCS5A01G443300 chr1D 73.260 273 60 12 1297 1561 208819715 208819448 1.500000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G443300 chr5A 623491647 623494674 3027 True 5592.0 5592 100.000 1 3028 1 chr5A.!!$R2 3027
1 TraesCS5A01G443300 chr5D 499224819 499227310 2491 True 3269.0 3269 90.733 577 3028 1 chr5D.!!$R2 2451
2 TraesCS5A01G443300 chr5B 619853438 619855961 2523 True 1688.5 3138 87.856 577 3028 2 chr5B.!!$R3 2451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.034670 AGAGATTGCAACAGGGCTCC 60.035 55.0 0.0 0.0 34.04 4.70 F
492 493 0.095245 CATACAACGCTGCCAAGACG 59.905 55.0 0.0 0.0 0.00 4.18 F
658 663 0.110554 ACGCCGCAAATTAACACGTC 60.111 50.0 0.0 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1788 0.395311 AGGTGCTGCCCATGAATGAG 60.395 55.000 9.36 0.0 38.26 2.90 R
1734 1841 1.532868 GCCCTTGGATCGAATCGAATG 59.467 52.381 10.12 0.0 39.99 2.67 R
2587 2717 1.839994 TGGAGGGAACATGCTCTTAGG 59.160 52.381 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.105782 CGAGAAGCGTTGCTGCGA 61.106 61.111 4.77 0.00 39.64 5.10
20 21 2.774774 GAGAAGCGTTGCTGCGAG 59.225 61.111 4.77 0.00 39.64 5.03
21 22 1.734477 GAGAAGCGTTGCTGCGAGA 60.734 57.895 4.77 0.00 39.64 4.04
22 23 1.284982 GAGAAGCGTTGCTGCGAGAA 61.285 55.000 4.77 0.00 39.64 2.87
23 24 0.880278 AGAAGCGTTGCTGCGAGAAA 60.880 50.000 4.77 0.00 39.64 2.52
24 25 0.451792 GAAGCGTTGCTGCGAGAAAG 60.452 55.000 4.77 0.00 39.62 2.62
25 26 1.845809 AAGCGTTGCTGCGAGAAAGG 61.846 55.000 4.77 0.00 39.62 3.11
26 27 2.174349 CGTTGCTGCGAGAAAGGC 59.826 61.111 0.00 0.00 0.00 4.35
27 28 2.563427 GTTGCTGCGAGAAAGGCC 59.437 61.111 0.00 0.00 0.00 5.19
28 29 2.112928 TTGCTGCGAGAAAGGCCA 59.887 55.556 5.01 0.00 0.00 5.36
29 30 1.528076 TTGCTGCGAGAAAGGCCAA 60.528 52.632 5.01 0.00 0.00 4.52
30 31 1.795170 TTGCTGCGAGAAAGGCCAAC 61.795 55.000 5.01 0.00 0.00 3.77
31 32 2.982744 GCTGCGAGAAAGGCCAACC 61.983 63.158 5.01 0.00 0.00 3.77
32 33 2.668212 TGCGAGAAAGGCCAACCG 60.668 61.111 5.01 1.74 42.76 4.44
33 34 4.103103 GCGAGAAAGGCCAACCGC 62.103 66.667 5.01 8.95 42.76 5.68
50 51 2.202878 CCGCAACCGACCATCGAT 60.203 61.111 0.00 0.00 43.74 3.59
51 52 2.525248 CCGCAACCGACCATCGATG 61.525 63.158 18.76 18.76 43.74 3.84
52 53 1.809619 CGCAACCGACCATCGATGT 60.810 57.895 23.27 11.88 43.74 3.06
53 54 1.358725 CGCAACCGACCATCGATGTT 61.359 55.000 23.27 10.29 43.74 2.71
54 55 0.096976 GCAACCGACCATCGATGTTG 59.903 55.000 23.27 19.73 43.74 3.33
55 56 0.096976 CAACCGACCATCGATGTTGC 59.903 55.000 23.27 11.22 43.74 4.17
56 57 0.321210 AACCGACCATCGATGTTGCA 60.321 50.000 23.27 0.00 43.74 4.08
57 58 0.321210 ACCGACCATCGATGTTGCAA 60.321 50.000 23.27 0.00 43.74 4.08
58 59 0.801872 CCGACCATCGATGTTGCAAA 59.198 50.000 23.27 0.00 43.74 3.68
59 60 1.202065 CCGACCATCGATGTTGCAAAG 60.202 52.381 23.27 9.09 43.74 2.77
60 61 1.791555 CGACCATCGATGTTGCAAAGC 60.792 52.381 23.27 0.00 43.74 3.51
61 62 0.168788 ACCATCGATGTTGCAAAGCG 59.831 50.000 23.27 6.83 0.00 4.68
62 63 0.523968 CCATCGATGTTGCAAAGCGG 60.524 55.000 23.27 0.64 0.00 5.52
63 64 1.135699 CATCGATGTTGCAAAGCGGC 61.136 55.000 17.50 0.00 0.00 6.53
64 65 2.582202 ATCGATGTTGCAAAGCGGCG 62.582 55.000 15.55 0.51 36.28 6.46
65 66 2.255252 GATGTTGCAAAGCGGCGT 59.745 55.556 9.37 0.00 36.28 5.68
66 67 1.797537 GATGTTGCAAAGCGGCGTC 60.798 57.895 9.37 0.13 36.28 5.19
67 68 3.267597 ATGTTGCAAAGCGGCGTCC 62.268 57.895 9.37 0.00 36.28 4.79
78 79 2.103538 GGCGTCCGTGCTTCGATA 59.896 61.111 3.69 0.00 42.86 2.92
79 80 1.517694 GGCGTCCGTGCTTCGATAA 60.518 57.895 3.69 0.00 42.86 1.75
80 81 1.629504 GCGTCCGTGCTTCGATAAC 59.370 57.895 3.69 0.00 42.86 1.89
81 82 1.074319 GCGTCCGTGCTTCGATAACA 61.074 55.000 3.69 0.00 42.86 2.41
82 83 1.556564 CGTCCGTGCTTCGATAACAT 58.443 50.000 3.69 0.00 42.86 2.71
83 84 1.517276 CGTCCGTGCTTCGATAACATC 59.483 52.381 3.69 0.00 42.86 3.06
94 95 1.583054 GATAACATCGGTGGTGCTCC 58.417 55.000 0.00 0.00 0.00 4.70
95 96 1.139058 GATAACATCGGTGGTGCTCCT 59.861 52.381 0.00 0.00 34.23 3.69
96 97 0.535335 TAACATCGGTGGTGCTCCTC 59.465 55.000 0.00 2.08 34.23 3.71
97 98 1.194781 AACATCGGTGGTGCTCCTCT 61.195 55.000 0.00 0.00 34.23 3.69
98 99 1.153489 CATCGGTGGTGCTCCTCTG 60.153 63.158 6.34 7.83 35.57 3.35
99 100 1.305297 ATCGGTGGTGCTCCTCTGA 60.305 57.895 18.00 18.00 43.74 3.27
100 101 1.608717 ATCGGTGGTGCTCCTCTGAC 61.609 60.000 18.04 2.89 42.84 3.51
101 102 2.574018 CGGTGGTGCTCCTCTGACA 61.574 63.158 9.60 0.00 36.12 3.58
102 103 1.754745 GGTGGTGCTCCTCTGACAA 59.245 57.895 6.34 0.00 34.23 3.18
103 104 0.321122 GGTGGTGCTCCTCTGACAAG 60.321 60.000 6.34 0.00 34.23 3.16
104 105 0.952984 GTGGTGCTCCTCTGACAAGC 60.953 60.000 6.34 0.69 36.56 4.01
105 106 1.123861 TGGTGCTCCTCTGACAAGCT 61.124 55.000 6.34 0.00 36.96 3.74
106 107 0.036022 GGTGCTCCTCTGACAAGCTT 59.964 55.000 0.00 0.00 36.96 3.74
107 108 1.437625 GTGCTCCTCTGACAAGCTTC 58.562 55.000 0.00 0.00 36.96 3.86
108 109 1.001860 GTGCTCCTCTGACAAGCTTCT 59.998 52.381 0.00 0.00 36.96 2.85
109 110 1.001746 TGCTCCTCTGACAAGCTTCTG 59.998 52.381 0.00 0.00 36.96 3.02
110 111 1.724429 CTCCTCTGACAAGCTTCTGC 58.276 55.000 0.00 0.00 40.05 4.26
111 112 1.001746 CTCCTCTGACAAGCTTCTGCA 59.998 52.381 0.00 0.00 42.74 4.41
112 113 1.417517 TCCTCTGACAAGCTTCTGCAA 59.582 47.619 0.00 0.00 42.74 4.08
113 114 1.534595 CCTCTGACAAGCTTCTGCAAC 59.465 52.381 0.00 0.00 42.74 4.17
114 115 2.216046 CTCTGACAAGCTTCTGCAACA 58.784 47.619 0.00 0.00 42.74 3.33
115 116 2.615447 CTCTGACAAGCTTCTGCAACAA 59.385 45.455 0.00 0.00 42.74 2.83
116 117 2.615447 TCTGACAAGCTTCTGCAACAAG 59.385 45.455 0.00 1.35 42.74 3.16
117 118 1.677576 TGACAAGCTTCTGCAACAAGG 59.322 47.619 0.00 0.00 42.74 3.61
118 119 0.386838 ACAAGCTTCTGCAACAAGGC 59.613 50.000 0.00 0.00 42.74 4.35
119 120 0.672342 CAAGCTTCTGCAACAAGGCT 59.328 50.000 0.00 1.51 42.74 4.58
120 121 1.068127 CAAGCTTCTGCAACAAGGCTT 59.932 47.619 0.00 0.00 42.74 4.35
121 122 2.276732 AGCTTCTGCAACAAGGCTTA 57.723 45.000 0.00 0.00 42.74 3.09
122 123 2.800250 AGCTTCTGCAACAAGGCTTAT 58.200 42.857 0.00 0.00 42.74 1.73
123 124 2.490903 AGCTTCTGCAACAAGGCTTATG 59.509 45.455 0.00 3.49 42.74 1.90
124 125 2.229784 GCTTCTGCAACAAGGCTTATGT 59.770 45.455 0.00 0.00 39.41 2.29
125 126 3.305608 GCTTCTGCAACAAGGCTTATGTT 60.306 43.478 0.00 0.00 41.50 2.71
126 127 4.797275 GCTTCTGCAACAAGGCTTATGTTT 60.797 41.667 0.00 0.00 38.90 2.83
127 128 5.564651 GCTTCTGCAACAAGGCTTATGTTTA 60.565 40.000 0.00 0.00 38.90 2.01
128 129 6.588719 TTCTGCAACAAGGCTTATGTTTAT 57.411 33.333 0.00 0.00 38.90 1.40
129 130 5.953183 TCTGCAACAAGGCTTATGTTTATG 58.047 37.500 0.00 0.00 38.90 1.90
130 131 5.709631 TCTGCAACAAGGCTTATGTTTATGA 59.290 36.000 0.00 0.00 38.90 2.15
131 132 6.208402 TCTGCAACAAGGCTTATGTTTATGAA 59.792 34.615 0.00 0.00 38.90 2.57
132 133 6.753180 TGCAACAAGGCTTATGTTTATGAAA 58.247 32.000 0.00 0.00 38.90 2.69
133 134 6.644592 TGCAACAAGGCTTATGTTTATGAAAC 59.355 34.615 0.00 0.00 38.90 2.78
134 135 7.685398 TGCAACAAGGCTTATGTTTATGAAACA 60.685 33.333 0.00 7.19 44.01 2.83
149 150 2.956469 AACATGCGTGTTGTTGCAC 58.044 47.368 23.20 0.00 46.43 4.57
150 151 0.455410 AACATGCGTGTTGTTGCACT 59.545 45.000 23.20 0.00 46.43 4.40
151 152 0.248580 ACATGCGTGTTGTTGCACTG 60.249 50.000 5.51 0.00 45.07 3.66
152 153 0.935831 CATGCGTGTTGTTGCACTGG 60.936 55.000 0.00 0.00 45.07 4.00
153 154 1.383456 ATGCGTGTTGTTGCACTGGT 61.383 50.000 0.00 0.00 45.07 4.00
154 155 1.138671 GCGTGTTGTTGCACTGGTT 59.861 52.632 0.00 0.00 37.24 3.67
155 156 0.457681 GCGTGTTGTTGCACTGGTTT 60.458 50.000 0.00 0.00 37.24 3.27
156 157 1.267365 CGTGTTGTTGCACTGGTTTG 58.733 50.000 0.00 0.00 37.24 2.93
157 158 0.998669 GTGTTGTTGCACTGGTTTGC 59.001 50.000 0.00 0.00 43.31 3.68
163 164 3.435590 GCACTGGTTTGCAGCTGA 58.564 55.556 20.43 0.00 42.49 4.26
164 165 1.285023 GCACTGGTTTGCAGCTGAG 59.715 57.895 20.43 7.14 42.49 3.35
165 166 1.285023 CACTGGTTTGCAGCTGAGC 59.715 57.895 20.43 7.05 0.00 4.26
166 167 1.150081 ACTGGTTTGCAGCTGAGCT 59.850 52.632 20.43 0.00 40.77 4.09
167 168 0.397941 ACTGGTTTGCAGCTGAGCTA 59.602 50.000 20.43 0.00 36.40 3.32
168 169 1.004044 ACTGGTTTGCAGCTGAGCTAT 59.996 47.619 20.43 0.00 36.40 2.97
169 170 1.400846 CTGGTTTGCAGCTGAGCTATG 59.599 52.381 20.43 0.00 36.40 2.23
170 171 1.271543 TGGTTTGCAGCTGAGCTATGT 60.272 47.619 20.43 0.00 36.40 2.29
171 172 1.815003 GGTTTGCAGCTGAGCTATGTT 59.185 47.619 20.43 0.00 36.40 2.71
172 173 2.229784 GGTTTGCAGCTGAGCTATGTTT 59.770 45.455 20.43 0.00 36.40 2.83
173 174 3.496155 GTTTGCAGCTGAGCTATGTTTC 58.504 45.455 20.43 0.00 36.40 2.78
174 175 2.775911 TGCAGCTGAGCTATGTTTCT 57.224 45.000 20.43 0.00 36.40 2.52
175 176 3.063510 TGCAGCTGAGCTATGTTTCTT 57.936 42.857 20.43 0.00 36.40 2.52
176 177 4.206477 TGCAGCTGAGCTATGTTTCTTA 57.794 40.909 20.43 0.00 36.40 2.10
177 178 4.578871 TGCAGCTGAGCTATGTTTCTTAA 58.421 39.130 20.43 0.00 36.40 1.85
178 179 5.003160 TGCAGCTGAGCTATGTTTCTTAAA 58.997 37.500 20.43 0.00 36.40 1.52
179 180 5.106555 TGCAGCTGAGCTATGTTTCTTAAAC 60.107 40.000 20.43 0.00 36.40 2.01
180 181 5.106555 GCAGCTGAGCTATGTTTCTTAAACA 60.107 40.000 20.43 7.60 45.98 2.83
202 203 6.815089 ACATTTGGTGTTGTTACAATGATGT 58.185 32.000 0.00 3.71 38.01 3.06
203 204 6.700960 ACATTTGGTGTTGTTACAATGATGTG 59.299 34.615 0.00 0.00 37.91 3.21
204 205 4.235939 TGGTGTTGTTACAATGATGTGC 57.764 40.909 0.00 0.00 40.84 4.57
205 206 3.633986 TGGTGTTGTTACAATGATGTGCA 59.366 39.130 0.00 0.00 40.84 4.57
206 207 4.098501 TGGTGTTGTTACAATGATGTGCAA 59.901 37.500 0.00 0.00 40.84 4.08
207 208 5.046529 GGTGTTGTTACAATGATGTGCAAA 58.953 37.500 0.00 0.00 40.84 3.68
208 209 5.051106 GGTGTTGTTACAATGATGTGCAAAC 60.051 40.000 0.00 0.00 40.84 2.93
209 210 5.518128 GTGTTGTTACAATGATGTGCAAACA 59.482 36.000 0.00 0.00 40.84 2.83
210 211 5.747675 TGTTGTTACAATGATGTGCAAACAG 59.252 36.000 0.00 0.00 40.84 3.16
211 212 4.869215 TGTTACAATGATGTGCAAACAGG 58.131 39.130 0.00 0.00 40.84 4.00
212 213 4.236935 GTTACAATGATGTGCAAACAGGG 58.763 43.478 0.00 0.00 40.84 4.45
213 214 2.596346 ACAATGATGTGCAAACAGGGA 58.404 42.857 0.00 0.00 38.69 4.20
214 215 2.297033 ACAATGATGTGCAAACAGGGAC 59.703 45.455 0.00 0.00 38.69 4.46
215 216 2.291209 ATGATGTGCAAACAGGGACA 57.709 45.000 0.00 0.00 43.39 4.02
216 217 1.317613 TGATGTGCAAACAGGGACAC 58.682 50.000 0.00 0.00 42.02 3.67
217 218 0.238289 GATGTGCAAACAGGGACACG 59.762 55.000 0.00 0.00 42.02 4.49
218 219 0.465460 ATGTGCAAACAGGGACACGT 60.465 50.000 0.00 0.00 42.02 4.49
219 220 1.355210 GTGCAAACAGGGACACGTG 59.645 57.895 15.48 15.48 38.41 4.49
220 221 1.078072 TGCAAACAGGGACACGTGT 60.078 52.632 23.64 23.64 46.76 4.49
228 229 2.684374 ACAGGGACACGTGTTTAAAACC 59.316 45.455 24.26 17.42 42.60 3.27
229 230 2.033675 CAGGGACACGTGTTTAAAACCC 59.966 50.000 25.84 25.84 36.67 4.11
230 231 2.022934 GGGACACGTGTTTAAAACCCA 58.977 47.619 27.38 0.00 36.47 4.51
231 232 2.624364 GGGACACGTGTTTAAAACCCAT 59.376 45.455 27.38 1.62 36.47 4.00
232 233 3.551250 GGGACACGTGTTTAAAACCCATG 60.551 47.826 27.38 0.00 36.47 3.66
233 234 3.067040 GGACACGTGTTTAAAACCCATGT 59.933 43.478 24.26 0.00 0.00 3.21
234 235 4.035278 ACACGTGTTTAAAACCCATGTG 57.965 40.909 17.22 20.03 46.52 3.21
235 236 3.695060 ACACGTGTTTAAAACCCATGTGA 59.305 39.130 24.99 0.00 44.86 3.58
236 237 4.339814 ACACGTGTTTAAAACCCATGTGAT 59.660 37.500 24.99 13.30 44.86 3.06
237 238 4.679197 CACGTGTTTAAAACCCATGTGATG 59.321 41.667 18.15 0.06 44.86 3.07
238 239 4.339814 ACGTGTTTAAAACCCATGTGATGT 59.660 37.500 0.00 0.00 0.00 3.06
239 240 5.163499 ACGTGTTTAAAACCCATGTGATGTT 60.163 36.000 0.00 0.00 0.00 2.71
240 241 5.174761 CGTGTTTAAAACCCATGTGATGTTG 59.825 40.000 0.00 0.00 0.00 3.33
241 242 5.050431 GTGTTTAAAACCCATGTGATGTTGC 60.050 40.000 0.00 0.00 0.00 4.17
242 243 4.944619 TTAAAACCCATGTGATGTTGCA 57.055 36.364 0.00 0.00 0.00 4.08
243 244 3.834489 AAAACCCATGTGATGTTGCAA 57.166 38.095 0.00 0.00 0.00 4.08
244 245 2.818130 AACCCATGTGATGTTGCAAC 57.182 45.000 22.83 22.83 0.00 4.17
245 246 0.597568 ACCCATGTGATGTTGCAACG 59.402 50.000 23.79 9.17 0.00 4.10
246 247 0.109179 CCCATGTGATGTTGCAACGG 60.109 55.000 23.79 16.17 0.00 4.44
247 248 0.597568 CCATGTGATGTTGCAACGGT 59.402 50.000 23.79 15.35 0.00 4.83
248 249 1.666599 CCATGTGATGTTGCAACGGTG 60.667 52.381 23.79 14.59 0.00 4.94
249 250 0.597568 ATGTGATGTTGCAACGGTGG 59.402 50.000 23.79 0.00 0.00 4.61
250 251 0.749818 TGTGATGTTGCAACGGTGGT 60.750 50.000 23.79 7.88 0.00 4.16
251 252 0.040425 GTGATGTTGCAACGGTGGTC 60.040 55.000 23.79 15.81 0.00 4.02
252 253 1.206578 GATGTTGCAACGGTGGTCG 59.793 57.895 23.79 0.00 45.88 4.79
253 254 2.780149 GATGTTGCAACGGTGGTCGC 62.780 60.000 23.79 3.97 43.89 5.19
254 255 4.659874 GTTGCAACGGTGGTCGCG 62.660 66.667 14.90 0.00 43.89 5.87
258 259 3.708734 CAACGGTGGTCGCGGTTC 61.709 66.667 6.13 0.00 43.89 3.62
259 260 4.224274 AACGGTGGTCGCGGTTCA 62.224 61.111 6.13 0.00 43.89 3.18
260 261 3.524648 AACGGTGGTCGCGGTTCAT 62.525 57.895 6.13 0.00 43.89 2.57
261 262 2.740826 CGGTGGTCGCGGTTCATT 60.741 61.111 6.13 0.00 0.00 2.57
262 263 2.322081 CGGTGGTCGCGGTTCATTT 61.322 57.895 6.13 0.00 0.00 2.32
263 264 1.500396 GGTGGTCGCGGTTCATTTC 59.500 57.895 6.13 0.00 0.00 2.17
264 265 1.500396 GTGGTCGCGGTTCATTTCC 59.500 57.895 6.13 0.00 0.00 3.13
272 273 1.616620 CGGTTCATTTCCGCAACATG 58.383 50.000 0.00 0.00 41.48 3.21
273 274 1.732077 CGGTTCATTTCCGCAACATGG 60.732 52.381 0.00 0.00 41.48 3.66
274 275 1.404047 GGTTCATTTCCGCAACATGGG 60.404 52.381 0.00 0.00 0.00 4.00
275 276 1.272212 GTTCATTTCCGCAACATGGGT 59.728 47.619 0.00 0.00 0.00 4.51
276 277 2.490115 GTTCATTTCCGCAACATGGGTA 59.510 45.455 0.00 0.00 0.00 3.69
277 278 3.011566 TCATTTCCGCAACATGGGTAT 57.988 42.857 0.00 0.00 0.00 2.73
278 279 3.360867 TCATTTCCGCAACATGGGTATT 58.639 40.909 0.00 0.00 0.00 1.89
279 280 3.130164 TCATTTCCGCAACATGGGTATTG 59.870 43.478 0.00 0.00 0.00 1.90
280 281 2.208132 TTCCGCAACATGGGTATTGT 57.792 45.000 0.00 0.00 0.00 2.71
281 282 2.208132 TCCGCAACATGGGTATTGTT 57.792 45.000 0.00 0.00 37.79 2.83
282 283 2.520069 TCCGCAACATGGGTATTGTTT 58.480 42.857 0.00 0.00 35.18 2.83
283 284 2.894126 TCCGCAACATGGGTATTGTTTT 59.106 40.909 0.00 0.00 35.18 2.43
284 285 3.322254 TCCGCAACATGGGTATTGTTTTT 59.678 39.130 0.00 0.00 35.18 1.94
285 286 4.523173 TCCGCAACATGGGTATTGTTTTTA 59.477 37.500 0.00 0.00 35.18 1.52
286 287 5.010719 TCCGCAACATGGGTATTGTTTTTAA 59.989 36.000 0.00 0.00 35.18 1.52
287 288 5.696724 CCGCAACATGGGTATTGTTTTTAAA 59.303 36.000 0.00 0.00 35.18 1.52
288 289 6.202954 CCGCAACATGGGTATTGTTTTTAAAA 59.797 34.615 0.00 0.00 35.18 1.52
289 290 7.254795 CCGCAACATGGGTATTGTTTTTAAAAA 60.255 33.333 9.31 9.31 35.18 1.94
309 310 5.959618 AAAAACCCGGTTTAGAGAGATTG 57.040 39.130 16.03 0.00 34.43 2.67
310 311 2.693267 ACCCGGTTTAGAGAGATTGC 57.307 50.000 0.00 0.00 0.00 3.56
311 312 1.906574 ACCCGGTTTAGAGAGATTGCA 59.093 47.619 0.00 0.00 0.00 4.08
312 313 2.304761 ACCCGGTTTAGAGAGATTGCAA 59.695 45.455 0.00 0.00 0.00 4.08
313 314 2.678336 CCCGGTTTAGAGAGATTGCAAC 59.322 50.000 0.00 0.00 0.00 4.17
314 315 3.334691 CCGGTTTAGAGAGATTGCAACA 58.665 45.455 0.00 0.00 0.00 3.33
315 316 3.372206 CCGGTTTAGAGAGATTGCAACAG 59.628 47.826 0.00 0.00 0.00 3.16
316 317 3.372206 CGGTTTAGAGAGATTGCAACAGG 59.628 47.826 0.00 0.00 0.00 4.00
317 318 3.691609 GGTTTAGAGAGATTGCAACAGGG 59.308 47.826 0.00 0.00 0.00 4.45
318 319 2.698855 TAGAGAGATTGCAACAGGGC 57.301 50.000 0.00 0.00 0.00 5.19
319 320 0.990374 AGAGAGATTGCAACAGGGCT 59.010 50.000 0.00 0.00 34.04 5.19
320 321 1.065564 AGAGAGATTGCAACAGGGCTC 60.066 52.381 0.00 4.96 34.04 4.70
321 322 0.034670 AGAGATTGCAACAGGGCTCC 60.035 55.000 0.00 0.00 34.04 4.70
322 323 0.034670 GAGATTGCAACAGGGCTCCT 60.035 55.000 0.00 0.00 34.04 3.69
330 331 2.752358 CAGGGCTCCTGTTGCAGA 59.248 61.111 11.85 0.00 45.82 4.26
331 332 1.073722 CAGGGCTCCTGTTGCAGAA 59.926 57.895 11.85 0.00 45.82 3.02
332 333 0.959372 CAGGGCTCCTGTTGCAGAAG 60.959 60.000 11.85 0.00 45.82 2.85
333 334 1.676967 GGGCTCCTGTTGCAGAAGG 60.677 63.158 9.90 9.90 32.44 3.46
334 335 2.338785 GGCTCCTGTTGCAGAAGGC 61.339 63.158 11.07 0.00 45.13 4.35
335 336 2.338785 GCTCCTGTTGCAGAAGGCC 61.339 63.158 11.07 0.00 43.89 5.19
336 337 2.032528 TCCTGTTGCAGAAGGCCG 59.967 61.111 11.07 0.00 43.89 6.13
337 338 2.032528 CCTGTTGCAGAAGGCCGA 59.967 61.111 0.00 0.00 43.89 5.54
338 339 2.037136 CCTGTTGCAGAAGGCCGAG 61.037 63.158 0.00 0.00 43.89 4.63
339 340 2.669569 TGTTGCAGAAGGCCGAGC 60.670 61.111 0.00 0.26 43.89 5.03
340 341 2.359230 GTTGCAGAAGGCCGAGCT 60.359 61.111 11.85 0.00 43.89 4.09
341 342 2.046892 TTGCAGAAGGCCGAGCTC 60.047 61.111 2.73 2.73 43.89 4.09
342 343 2.882677 TTGCAGAAGGCCGAGCTCA 61.883 57.895 15.40 0.44 43.89 4.26
343 344 2.046892 GCAGAAGGCCGAGCTCAA 60.047 61.111 15.40 0.00 36.11 3.02
344 345 2.394563 GCAGAAGGCCGAGCTCAAC 61.395 63.158 15.40 4.33 36.11 3.18
345 346 1.004560 CAGAAGGCCGAGCTCAACA 60.005 57.895 15.40 0.00 0.00 3.33
346 347 0.392193 CAGAAGGCCGAGCTCAACAT 60.392 55.000 15.40 0.00 0.00 2.71
347 348 1.134699 CAGAAGGCCGAGCTCAACATA 60.135 52.381 15.40 0.00 0.00 2.29
348 349 1.137872 AGAAGGCCGAGCTCAACATAG 59.862 52.381 15.40 0.00 0.00 2.23
349 350 1.137086 GAAGGCCGAGCTCAACATAGA 59.863 52.381 15.40 0.00 0.00 1.98
350 351 1.418334 AGGCCGAGCTCAACATAGAT 58.582 50.000 15.40 0.00 0.00 1.98
351 352 1.342819 AGGCCGAGCTCAACATAGATC 59.657 52.381 15.40 0.00 0.00 2.75
352 353 1.342819 GGCCGAGCTCAACATAGATCT 59.657 52.381 15.40 0.00 29.58 2.75
353 354 2.224161 GGCCGAGCTCAACATAGATCTT 60.224 50.000 15.40 0.00 29.58 2.40
354 355 2.799412 GCCGAGCTCAACATAGATCTTG 59.201 50.000 15.40 1.85 29.58 3.02
355 356 3.739519 GCCGAGCTCAACATAGATCTTGT 60.740 47.826 15.40 2.53 29.58 3.16
356 357 4.437239 CCGAGCTCAACATAGATCTTGTT 58.563 43.478 15.40 8.84 37.79 2.83
357 358 4.872691 CCGAGCTCAACATAGATCTTGTTT 59.127 41.667 15.40 6.52 35.18 2.83
358 359 5.352569 CCGAGCTCAACATAGATCTTGTTTT 59.647 40.000 15.40 6.88 35.18 2.43
359 360 6.535150 CCGAGCTCAACATAGATCTTGTTTTA 59.465 38.462 15.40 9.62 35.18 1.52
360 361 7.064609 CCGAGCTCAACATAGATCTTGTTTTAA 59.935 37.037 15.40 7.96 35.18 1.52
361 362 8.443160 CGAGCTCAACATAGATCTTGTTTTAAA 58.557 33.333 15.40 0.00 35.18 1.52
362 363 9.766277 GAGCTCAACATAGATCTTGTTTTAAAG 57.234 33.333 9.40 12.89 35.18 1.85
363 364 8.734386 AGCTCAACATAGATCTTGTTTTAAAGG 58.266 33.333 15.99 8.04 35.18 3.11
364 365 8.730680 GCTCAACATAGATCTTGTTTTAAAGGA 58.269 33.333 15.99 10.66 35.18 3.36
390 391 7.559590 AAAATAAAGGTTCATGGAGAGATCG 57.440 36.000 0.00 0.00 0.00 3.69
391 392 2.611225 AAGGTTCATGGAGAGATCGC 57.389 50.000 0.00 0.00 0.00 4.58
392 393 1.489481 AGGTTCATGGAGAGATCGCA 58.511 50.000 0.00 0.00 0.00 5.10
393 394 1.833630 AGGTTCATGGAGAGATCGCAA 59.166 47.619 0.00 0.00 0.00 4.85
394 395 1.936547 GGTTCATGGAGAGATCGCAAC 59.063 52.381 0.00 0.00 0.00 4.17
395 396 2.621338 GTTCATGGAGAGATCGCAACA 58.379 47.619 0.00 0.00 0.00 3.33
396 397 3.002791 GTTCATGGAGAGATCGCAACAA 58.997 45.455 0.00 0.00 0.00 2.83
397 398 2.897436 TCATGGAGAGATCGCAACAAG 58.103 47.619 0.00 0.00 0.00 3.16
398 399 1.938577 CATGGAGAGATCGCAACAAGG 59.061 52.381 0.00 0.00 0.00 3.61
399 400 0.391661 TGGAGAGATCGCAACAAGGC 60.392 55.000 0.00 0.00 0.00 4.35
400 401 0.107945 GGAGAGATCGCAACAAGGCT 60.108 55.000 0.00 0.00 0.00 4.58
401 402 1.285578 GAGAGATCGCAACAAGGCTC 58.714 55.000 0.00 0.00 0.00 4.70
402 403 0.107945 AGAGATCGCAACAAGGCTCC 60.108 55.000 0.00 0.00 0.00 4.70
403 404 0.107945 GAGATCGCAACAAGGCTCCT 60.108 55.000 0.00 0.00 0.00 3.69
404 405 0.392193 AGATCGCAACAAGGCTCCTG 60.392 55.000 0.00 0.00 0.00 3.86
405 406 0.674895 GATCGCAACAAGGCTCCTGT 60.675 55.000 0.00 0.00 0.00 4.00
406 407 0.250901 ATCGCAACAAGGCTCCTGTT 60.251 50.000 0.00 0.00 0.00 3.16
407 408 1.165907 TCGCAACAAGGCTCCTGTTG 61.166 55.000 22.01 22.01 43.90 3.33
408 409 1.447317 CGCAACAAGGCTCCTGTTGT 61.447 55.000 25.06 8.21 43.24 3.32
409 410 1.604604 GCAACAAGGCTCCTGTTGTA 58.395 50.000 25.06 0.00 43.24 2.41
410 411 1.537202 GCAACAAGGCTCCTGTTGTAG 59.463 52.381 25.06 8.18 43.24 2.74
411 412 2.810400 GCAACAAGGCTCCTGTTGTAGA 60.810 50.000 25.06 0.00 43.24 2.59
412 413 3.476552 CAACAAGGCTCCTGTTGTAGAA 58.523 45.455 19.31 0.00 35.83 2.10
413 414 3.409026 ACAAGGCTCCTGTTGTAGAAG 57.591 47.619 0.00 0.00 35.10 2.85
414 415 2.972713 ACAAGGCTCCTGTTGTAGAAGA 59.027 45.455 0.00 0.00 35.10 2.87
415 416 3.244249 ACAAGGCTCCTGTTGTAGAAGAC 60.244 47.826 0.00 0.00 35.10 3.01
416 417 1.546476 AGGCTCCTGTTGTAGAAGACG 59.454 52.381 0.00 0.00 0.00 4.18
417 418 1.404315 GGCTCCTGTTGTAGAAGACGG 60.404 57.143 0.00 0.00 0.00 4.79
418 419 1.544691 GCTCCTGTTGTAGAAGACGGA 59.455 52.381 0.00 0.00 0.00 4.69
419 420 2.416162 GCTCCTGTTGTAGAAGACGGAG 60.416 54.545 9.40 9.40 38.46 4.63
420 421 1.544691 TCCTGTTGTAGAAGACGGAGC 59.455 52.381 0.00 0.00 0.00 4.70
421 422 1.404315 CCTGTTGTAGAAGACGGAGCC 60.404 57.143 0.00 0.00 0.00 4.70
422 423 0.606604 TGTTGTAGAAGACGGAGCCC 59.393 55.000 0.00 0.00 0.00 5.19
423 424 0.606604 GTTGTAGAAGACGGAGCCCA 59.393 55.000 0.00 0.00 0.00 5.36
424 425 1.001633 GTTGTAGAAGACGGAGCCCAA 59.998 52.381 0.00 0.00 0.00 4.12
425 426 0.606604 TGTAGAAGACGGAGCCCAAC 59.393 55.000 0.00 0.00 0.00 3.77
426 427 0.606604 GTAGAAGACGGAGCCCAACA 59.393 55.000 0.00 0.00 0.00 3.33
427 428 0.606604 TAGAAGACGGAGCCCAACAC 59.393 55.000 0.00 0.00 0.00 3.32
428 429 1.070786 GAAGACGGAGCCCAACACA 59.929 57.895 0.00 0.00 0.00 3.72
429 430 0.534203 GAAGACGGAGCCCAACACAA 60.534 55.000 0.00 0.00 0.00 3.33
430 431 0.106918 AAGACGGAGCCCAACACAAA 60.107 50.000 0.00 0.00 0.00 2.83
431 432 0.110486 AGACGGAGCCCAACACAAAT 59.890 50.000 0.00 0.00 0.00 2.32
432 433 1.349688 AGACGGAGCCCAACACAAATA 59.650 47.619 0.00 0.00 0.00 1.40
433 434 2.156098 GACGGAGCCCAACACAAATAA 58.844 47.619 0.00 0.00 0.00 1.40
434 435 1.883926 ACGGAGCCCAACACAAATAAC 59.116 47.619 0.00 0.00 0.00 1.89
435 436 2.159382 CGGAGCCCAACACAAATAACT 58.841 47.619 0.00 0.00 0.00 2.24
436 437 2.556622 CGGAGCCCAACACAAATAACTT 59.443 45.455 0.00 0.00 0.00 2.66
437 438 3.611530 CGGAGCCCAACACAAATAACTTG 60.612 47.826 0.00 0.00 41.19 3.16
439 440 4.202212 GGAGCCCAACACAAATAACTTGTT 60.202 41.667 0.00 0.00 46.49 2.83
440 441 5.010213 GGAGCCCAACACAAATAACTTGTTA 59.990 40.000 0.00 0.00 46.49 2.41
441 442 6.295067 GGAGCCCAACACAAATAACTTGTTAT 60.295 38.462 0.60 0.60 46.49 1.89
442 443 7.094118 GGAGCCCAACACAAATAACTTGTTATA 60.094 37.037 6.46 0.00 46.49 0.98
443 444 8.184304 AGCCCAACACAAATAACTTGTTATAA 57.816 30.769 6.46 0.00 46.49 0.98
444 445 8.643324 AGCCCAACACAAATAACTTGTTATAAA 58.357 29.630 6.46 0.00 46.49 1.40
445 446 8.921670 GCCCAACACAAATAACTTGTTATAAAG 58.078 33.333 6.46 3.39 46.49 1.85
446 447 9.418045 CCCAACACAAATAACTTGTTATAAAGG 57.582 33.333 6.46 3.55 46.49 3.11
447 448 9.974980 CCAACACAAATAACTTGTTATAAAGGT 57.025 29.630 6.46 2.17 46.49 3.50
459 460 9.396022 ACTTGTTATAAAGGTTGATACTCATGG 57.604 33.333 0.00 0.00 0.00 3.66
460 461 7.801716 TGTTATAAAGGTTGATACTCATGGC 57.198 36.000 0.00 0.00 0.00 4.40
461 462 7.573710 TGTTATAAAGGTTGATACTCATGGCT 58.426 34.615 0.00 0.00 0.00 4.75
462 463 8.710239 TGTTATAAAGGTTGATACTCATGGCTA 58.290 33.333 0.00 0.00 0.00 3.93
463 464 9.726438 GTTATAAAGGTTGATACTCATGGCTAT 57.274 33.333 0.00 0.00 0.00 2.97
465 466 8.854614 ATAAAGGTTGATACTCATGGCTATTC 57.145 34.615 0.00 0.00 0.00 1.75
466 467 4.887748 AGGTTGATACTCATGGCTATTCG 58.112 43.478 0.00 0.00 0.00 3.34
467 468 3.997021 GGTTGATACTCATGGCTATTCGG 59.003 47.826 0.00 0.00 0.00 4.30
468 469 3.961480 TGATACTCATGGCTATTCGGG 57.039 47.619 0.00 0.00 0.00 5.14
469 470 2.567169 TGATACTCATGGCTATTCGGGG 59.433 50.000 0.00 0.00 0.00 5.73
470 471 0.685097 TACTCATGGCTATTCGGGGC 59.315 55.000 0.00 0.00 0.00 5.80
471 472 1.669115 CTCATGGCTATTCGGGGCG 60.669 63.158 0.00 0.00 0.00 6.13
472 473 3.357079 CATGGCTATTCGGGGCGC 61.357 66.667 0.00 0.00 0.00 6.53
473 474 4.643387 ATGGCTATTCGGGGCGCC 62.643 66.667 21.18 21.18 42.78 6.53
475 476 4.643387 GGCTATTCGGGGCGCCAT 62.643 66.667 30.85 15.87 42.06 4.40
476 477 2.345991 GCTATTCGGGGCGCCATA 59.654 61.111 30.85 16.17 0.00 2.74
477 478 2.033194 GCTATTCGGGGCGCCATAC 61.033 63.158 30.85 16.88 0.00 2.39
478 479 1.369692 CTATTCGGGGCGCCATACA 59.630 57.895 30.85 9.69 0.00 2.29
479 480 0.250124 CTATTCGGGGCGCCATACAA 60.250 55.000 30.85 15.17 0.00 2.41
480 481 0.533308 TATTCGGGGCGCCATACAAC 60.533 55.000 30.85 9.47 0.00 3.32
481 482 4.823419 TCGGGGCGCCATACAACG 62.823 66.667 30.85 20.72 0.00 4.10
487 488 3.124270 CGCCATACAACGCTGCCA 61.124 61.111 0.00 0.00 0.00 4.92
488 489 2.685829 CGCCATACAACGCTGCCAA 61.686 57.895 0.00 0.00 0.00 4.52
489 490 1.137404 GCCATACAACGCTGCCAAG 59.863 57.895 0.00 0.00 0.00 3.61
490 491 1.305219 GCCATACAACGCTGCCAAGA 61.305 55.000 0.00 0.00 0.00 3.02
491 492 0.447801 CCATACAACGCTGCCAAGAC 59.552 55.000 0.00 0.00 0.00 3.01
492 493 0.095245 CATACAACGCTGCCAAGACG 59.905 55.000 0.00 0.00 0.00 4.18
493 494 1.019278 ATACAACGCTGCCAAGACGG 61.019 55.000 0.00 0.00 38.11 4.79
494 495 2.372040 TACAACGCTGCCAAGACGGT 62.372 55.000 0.00 0.00 36.97 4.83
495 496 2.665185 AACGCTGCCAAGACGGTC 60.665 61.111 0.00 0.00 36.97 4.79
498 499 4.681978 GCTGCCAAGACGGTCGGT 62.682 66.667 1.89 0.00 36.97 4.69
499 500 2.432628 CTGCCAAGACGGTCGGTC 60.433 66.667 1.89 2.39 46.45 4.79
508 509 2.955477 GACGGTCGGTCCTTTTAGAT 57.045 50.000 0.00 0.00 39.90 1.98
509 510 3.242549 GACGGTCGGTCCTTTTAGATT 57.757 47.619 0.00 0.00 39.90 2.40
510 511 4.376340 GACGGTCGGTCCTTTTAGATTA 57.624 45.455 0.00 0.00 39.90 1.75
511 512 4.941657 GACGGTCGGTCCTTTTAGATTAT 58.058 43.478 0.00 0.00 39.90 1.28
512 513 4.941657 ACGGTCGGTCCTTTTAGATTATC 58.058 43.478 0.00 0.00 0.00 1.75
513 514 4.403432 ACGGTCGGTCCTTTTAGATTATCA 59.597 41.667 0.00 0.00 0.00 2.15
514 515 4.743644 CGGTCGGTCCTTTTAGATTATCAC 59.256 45.833 0.00 0.00 0.00 3.06
515 516 5.055144 GGTCGGTCCTTTTAGATTATCACC 58.945 45.833 0.00 0.00 0.00 4.02
516 517 5.055144 GTCGGTCCTTTTAGATTATCACCC 58.945 45.833 0.00 0.00 0.00 4.61
517 518 4.056050 CGGTCCTTTTAGATTATCACCCG 58.944 47.826 0.00 0.00 0.00 5.28
518 519 4.386711 GGTCCTTTTAGATTATCACCCGG 58.613 47.826 0.00 0.00 0.00 5.73
519 520 3.813724 GTCCTTTTAGATTATCACCCGGC 59.186 47.826 0.00 0.00 0.00 6.13
520 521 3.146847 CCTTTTAGATTATCACCCGGCC 58.853 50.000 0.00 0.00 0.00 6.13
521 522 2.536761 TTTAGATTATCACCCGGCCG 57.463 50.000 21.04 21.04 0.00 6.13
522 523 1.707106 TTAGATTATCACCCGGCCGA 58.293 50.000 30.73 6.75 0.00 5.54
523 524 1.933021 TAGATTATCACCCGGCCGAT 58.067 50.000 30.73 15.14 0.00 4.18
524 525 0.321671 AGATTATCACCCGGCCGATG 59.678 55.000 30.73 24.27 0.00 3.84
525 526 1.298859 GATTATCACCCGGCCGATGC 61.299 60.000 30.73 7.42 0.00 3.91
526 527 3.800685 TTATCACCCGGCCGATGCG 62.801 63.158 30.73 13.43 38.85 4.73
560 561 7.219484 CCCCCAAACAATTAGCTATGAATAG 57.781 40.000 1.33 0.00 0.00 1.73
561 562 6.209391 CCCCCAAACAATTAGCTATGAATAGG 59.791 42.308 1.33 0.00 0.00 2.57
562 563 7.004086 CCCCAAACAATTAGCTATGAATAGGA 58.996 38.462 1.33 0.00 0.00 2.94
563 564 7.175641 CCCCAAACAATTAGCTATGAATAGGAG 59.824 40.741 1.33 0.00 0.00 3.69
564 565 7.721399 CCCAAACAATTAGCTATGAATAGGAGT 59.279 37.037 1.33 0.00 0.00 3.85
565 566 9.125026 CCAAACAATTAGCTATGAATAGGAGTT 57.875 33.333 1.33 0.00 0.00 3.01
569 570 9.686683 ACAATTAGCTATGAATAGGAGTTTTGT 57.313 29.630 1.33 0.00 0.00 2.83
605 606 1.097232 CATGAATGCTCGGCCAGAAA 58.903 50.000 2.24 0.00 0.00 2.52
614 615 1.264288 CTCGGCCAGAAAGTTGTGAAC 59.736 52.381 2.24 0.00 0.00 3.18
624 629 5.351465 CAGAAAGTTGTGAACACACTGTACT 59.649 40.000 7.16 5.78 41.67 2.73
654 659 3.544440 CGCTAATACGCCGCAAATTAACA 60.544 43.478 0.00 0.00 0.00 2.41
655 660 3.722289 GCTAATACGCCGCAAATTAACAC 59.278 43.478 0.00 0.00 0.00 3.32
656 661 2.445453 ATACGCCGCAAATTAACACG 57.555 45.000 0.00 0.00 0.00 4.49
657 662 1.146637 TACGCCGCAAATTAACACGT 58.853 45.000 0.00 0.00 36.17 4.49
658 663 0.110554 ACGCCGCAAATTAACACGTC 60.111 50.000 0.00 0.00 0.00 4.34
659 664 0.165079 CGCCGCAAATTAACACGTCT 59.835 50.000 0.00 0.00 0.00 4.18
660 665 1.390803 CGCCGCAAATTAACACGTCTA 59.609 47.619 0.00 0.00 0.00 2.59
662 667 2.414138 GCCGCAAATTAACACGTCTACT 59.586 45.455 0.00 0.00 0.00 2.57
663 668 3.120442 GCCGCAAATTAACACGTCTACTT 60.120 43.478 0.00 0.00 0.00 2.24
664 669 4.091800 GCCGCAAATTAACACGTCTACTTA 59.908 41.667 0.00 0.00 0.00 2.24
665 670 5.389725 GCCGCAAATTAACACGTCTACTTAA 60.390 40.000 0.00 0.00 0.00 1.85
666 671 6.592166 CCGCAAATTAACACGTCTACTTAAA 58.408 36.000 0.00 0.00 0.00 1.52
669 674 7.252865 CGCAAATTAACACGTCTACTTAAATGC 60.253 37.037 0.00 1.41 0.00 3.56
670 675 7.252865 GCAAATTAACACGTCTACTTAAATGCG 60.253 37.037 0.00 0.00 0.00 4.73
671 676 7.585286 AATTAACACGTCTACTTAAATGCGA 57.415 32.000 0.00 0.00 0.00 5.10
673 678 7.585286 TTAACACGTCTACTTAAATGCGATT 57.415 32.000 0.00 0.00 0.00 3.34
674 679 8.686397 TTAACACGTCTACTTAAATGCGATTA 57.314 30.769 0.00 0.00 0.00 1.75
675 680 6.807708 ACACGTCTACTTAAATGCGATTAG 57.192 37.500 0.00 0.00 0.00 1.73
676 681 5.747197 ACACGTCTACTTAAATGCGATTAGG 59.253 40.000 0.00 0.00 0.00 2.69
679 684 5.975344 CGTCTACTTAAATGCGATTAGGACA 59.025 40.000 0.00 0.00 0.00 4.02
680 685 6.641314 CGTCTACTTAAATGCGATTAGGACAT 59.359 38.462 0.00 0.00 0.00 3.06
681 686 7.169308 CGTCTACTTAAATGCGATTAGGACATT 59.831 37.037 0.00 0.00 35.59 2.71
682 687 8.488764 GTCTACTTAAATGCGATTAGGACATTC 58.511 37.037 0.00 0.00 33.01 2.67
683 688 8.421784 TCTACTTAAATGCGATTAGGACATTCT 58.578 33.333 0.00 0.00 33.01 2.40
686 691 1.953559 TGCGATTAGGACATTCTGGC 58.046 50.000 0.00 0.00 0.00 4.85
688 693 2.092968 TGCGATTAGGACATTCTGGCTT 60.093 45.455 0.00 0.00 0.00 4.35
698 703 4.357142 GACATTCTGGCTTGTTGCATATG 58.643 43.478 0.00 0.00 45.15 1.78
700 705 4.097437 ACATTCTGGCTTGTTGCATATGAG 59.903 41.667 6.97 0.00 45.15 2.90
701 706 2.019249 TCTGGCTTGTTGCATATGAGC 58.981 47.619 6.97 5.84 45.15 4.26
776 799 3.310860 ATCTGCCGACGTCCCAACC 62.311 63.158 10.58 0.00 0.00 3.77
786 809 3.691342 TCCCAACCAGTCGCTCCG 61.691 66.667 0.00 0.00 0.00 4.63
828 851 1.596408 GCGAATTGGCCAATTGGGT 59.404 52.632 41.25 22.91 40.77 4.51
868 898 2.837498 CAAACTTTTCCCTTTGCCCTG 58.163 47.619 0.00 0.00 0.00 4.45
873 930 1.729267 TTTCCCTTTGCCCTGCTCCT 61.729 55.000 0.00 0.00 0.00 3.69
881 938 3.465403 CCCTGCTCCTCCGTCCAG 61.465 72.222 0.00 0.00 0.00 3.86
882 939 4.154347 CCTGCTCCTCCGTCCAGC 62.154 72.222 0.00 0.00 0.00 4.85
913 977 2.151202 GCCAGATCCACTCGACAAAAA 58.849 47.619 0.00 0.00 0.00 1.94
980 1065 4.873129 CACGAGCACGATCCCCCG 62.873 72.222 11.40 0.00 42.66 5.73
1281 1383 2.432628 GACCACACGGCCTTCTCG 60.433 66.667 0.00 0.00 34.57 4.04
1698 1800 0.533755 CCGTCTCCTCATTCATGGGC 60.534 60.000 0.00 0.00 0.00 5.36
1734 1841 3.532155 ACGCTCCCGAGATGAGGC 61.532 66.667 0.00 0.00 38.29 4.70
1753 1860 1.532868 GCATTCGATTCGATCCAAGGG 59.467 52.381 9.96 0.00 35.23 3.95
1754 1861 1.532868 CATTCGATTCGATCCAAGGGC 59.467 52.381 9.96 0.00 35.23 5.19
1755 1862 0.529773 TTCGATTCGATCCAAGGGCG 60.530 55.000 9.96 0.00 35.23 6.13
1763 1888 1.095600 GATCCAAGGGCGTTTCTTCC 58.904 55.000 0.00 0.00 0.00 3.46
1764 1889 0.676782 ATCCAAGGGCGTTTCTTCCG 60.677 55.000 0.00 0.00 0.00 4.30
1778 1903 4.457834 TTCTTCCGATCCTCTGTTCTTC 57.542 45.455 0.00 0.00 0.00 2.87
1780 1905 2.124277 TCCGATCCTCTGTTCTTCGA 57.876 50.000 0.00 0.00 31.74 3.71
1811 1936 4.000988 TGCTACGGAAATTTCAGTCTTCC 58.999 43.478 24.32 13.04 36.92 3.46
1823 1948 7.962995 ATTTCAGTCTTCCTAGTCTGTATGA 57.037 36.000 0.00 0.00 38.30 2.15
1933 2058 7.494952 TCTTAAGCTGATTGTGATGATCTGAAG 59.505 37.037 0.00 0.00 0.00 3.02
1989 2114 4.141482 GCTCCAAGGTGTAAATCATCCCTA 60.141 45.833 0.00 0.00 0.00 3.53
2002 2127 7.589958 AAATCATCCCTACTACTGACTAGTG 57.410 40.000 0.00 0.00 36.29 2.74
2003 2128 5.970501 TCATCCCTACTACTGACTAGTGA 57.029 43.478 0.00 0.00 36.29 3.41
2056 2181 9.712305 GTATCTTGCTATGTTCTTATGTACCAT 57.288 33.333 0.00 0.00 0.00 3.55
2138 2264 7.063934 TGATACATGAAAGAGATCAGCTGAT 57.936 36.000 29.09 29.09 37.51 2.90
2146 2272 5.467035 AAGAGATCAGCTGATAGGTAAGC 57.533 43.478 28.78 14.46 39.82 3.09
2148 2274 4.766891 AGAGATCAGCTGATAGGTAAGCTC 59.233 45.833 28.78 25.00 46.82 4.09
2364 2494 7.956328 AGAGTTGGTATCATGTGACTAGTAA 57.044 36.000 0.00 0.00 0.00 2.24
2445 2575 7.781324 AGATTTTGATGGTGGTAATTCTTGT 57.219 32.000 0.00 0.00 0.00 3.16
2587 2717 4.439253 ACTAAAGATTATGCCCCCACTC 57.561 45.455 0.00 0.00 0.00 3.51
2676 2806 2.768253 TTCATGTGACCAGCCTGTAG 57.232 50.000 0.00 0.00 0.00 2.74
2868 3001 1.228398 TTGCTCCGGATGTTGCCAA 60.228 52.632 3.57 0.00 0.00 4.52
2936 3073 4.161189 TGGGATCAGATCAGAGTCTTCAAC 59.839 45.833 12.66 0.00 0.00 3.18
2942 3079 6.396450 TCAGATCAGAGTCTTCAACAAGATG 58.604 40.000 0.00 0.00 40.88 2.90
2943 3080 5.581479 CAGATCAGAGTCTTCAACAAGATGG 59.419 44.000 0.00 0.00 40.88 3.51
2966 3103 1.002033 GCAGATCCGATTCATGGCAAC 60.002 52.381 0.00 0.00 0.00 4.17
3020 3157 1.221021 GGAGGTTAAGCCAGACGGG 59.779 63.158 0.00 0.00 40.61 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.064248 CTCGCAGCAACGCTTCTCG 62.064 63.158 0.00 0.00 45.38 4.04
3 4 1.284982 TTCTCGCAGCAACGCTTCTC 61.285 55.000 0.00 0.00 36.40 2.87
4 5 0.880278 TTTCTCGCAGCAACGCTTCT 60.880 50.000 0.00 0.00 36.40 2.85
5 6 0.451792 CTTTCTCGCAGCAACGCTTC 60.452 55.000 0.00 0.00 36.40 3.86
6 7 1.571460 CTTTCTCGCAGCAACGCTT 59.429 52.632 0.00 0.00 36.40 4.68
7 8 2.320587 CCTTTCTCGCAGCAACGCT 61.321 57.895 0.00 0.00 40.77 5.07
8 9 2.174349 CCTTTCTCGCAGCAACGC 59.826 61.111 0.00 0.00 0.00 4.84
9 10 2.174349 GCCTTTCTCGCAGCAACG 59.826 61.111 0.00 0.00 0.00 4.10
10 11 1.795170 TTGGCCTTTCTCGCAGCAAC 61.795 55.000 3.32 0.00 0.00 4.17
11 12 1.528076 TTGGCCTTTCTCGCAGCAA 60.528 52.632 3.32 0.00 0.00 3.91
12 13 2.112928 TTGGCCTTTCTCGCAGCA 59.887 55.556 3.32 0.00 0.00 4.41
13 14 2.563427 GTTGGCCTTTCTCGCAGC 59.437 61.111 3.32 0.00 0.00 5.25
14 15 2.680913 CGGTTGGCCTTTCTCGCAG 61.681 63.158 3.32 0.00 0.00 5.18
15 16 2.668212 CGGTTGGCCTTTCTCGCA 60.668 61.111 3.32 0.00 0.00 5.10
16 17 4.103103 GCGGTTGGCCTTTCTCGC 62.103 66.667 3.32 8.99 36.51 5.03
33 34 2.202878 ATCGATGGTCGGTTGCGG 60.203 61.111 0.00 0.00 40.88 5.69
34 35 1.358725 AACATCGATGGTCGGTTGCG 61.359 55.000 28.09 0.38 40.88 4.85
35 36 0.096976 CAACATCGATGGTCGGTTGC 59.903 55.000 28.09 0.00 40.88 4.17
36 37 0.096976 GCAACATCGATGGTCGGTTG 59.903 55.000 28.09 21.88 41.55 3.77
37 38 0.321210 TGCAACATCGATGGTCGGTT 60.321 50.000 28.09 11.05 40.88 4.44
38 39 0.321210 TTGCAACATCGATGGTCGGT 60.321 50.000 28.09 4.96 40.88 4.69
39 40 0.801872 TTTGCAACATCGATGGTCGG 59.198 50.000 28.09 13.02 40.88 4.79
40 41 1.791555 GCTTTGCAACATCGATGGTCG 60.792 52.381 28.09 17.32 42.10 4.79
41 42 1.791555 CGCTTTGCAACATCGATGGTC 60.792 52.381 28.09 16.27 0.00 4.02
42 43 0.168788 CGCTTTGCAACATCGATGGT 59.831 50.000 28.09 20.88 0.00 3.55
43 44 0.523968 CCGCTTTGCAACATCGATGG 60.524 55.000 28.09 13.25 0.00 3.51
44 45 1.135699 GCCGCTTTGCAACATCGATG 61.136 55.000 23.68 23.68 0.00 3.84
45 46 1.137404 GCCGCTTTGCAACATCGAT 59.863 52.632 13.62 0.00 0.00 3.59
46 47 2.560861 GCCGCTTTGCAACATCGA 59.439 55.556 13.62 0.00 0.00 3.59
47 48 2.871080 CGCCGCTTTGCAACATCG 60.871 61.111 0.00 2.72 0.00 3.84
48 49 1.797537 GACGCCGCTTTGCAACATC 60.798 57.895 0.00 0.00 0.00 3.06
49 50 2.255252 GACGCCGCTTTGCAACAT 59.745 55.556 0.00 0.00 0.00 2.71
50 51 3.959975 GGACGCCGCTTTGCAACA 61.960 61.111 0.00 0.00 0.00 3.33
61 62 1.517694 TTATCGAAGCACGGACGCC 60.518 57.895 0.00 0.00 42.82 5.68
62 63 1.074319 TGTTATCGAAGCACGGACGC 61.074 55.000 0.00 0.00 42.82 5.19
63 64 1.517276 GATGTTATCGAAGCACGGACG 59.483 52.381 0.00 0.00 42.82 4.79
72 73 5.837767 GGAGCACCACCGATGTTATCGAA 62.838 52.174 12.34 0.00 44.71 3.71
73 74 4.417015 GGAGCACCACCGATGTTATCGA 62.417 54.545 12.34 0.00 44.71 3.59
74 75 2.134091 GGAGCACCACCGATGTTATCG 61.134 57.143 4.33 4.33 43.10 2.92
75 76 1.139058 AGGAGCACCACCGATGTTATC 59.861 52.381 2.07 0.00 38.94 1.75
76 77 1.139058 GAGGAGCACCACCGATGTTAT 59.861 52.381 2.07 0.00 38.94 1.89
77 78 0.535335 GAGGAGCACCACCGATGTTA 59.465 55.000 2.07 0.00 38.94 2.41
78 79 1.194781 AGAGGAGCACCACCGATGTT 61.195 55.000 2.07 0.00 38.94 2.71
79 80 1.610673 AGAGGAGCACCACCGATGT 60.611 57.895 2.07 0.00 38.94 3.06
80 81 1.153489 CAGAGGAGCACCACCGATG 60.153 63.158 2.07 0.00 38.94 3.84
81 82 1.305297 TCAGAGGAGCACCACCGAT 60.305 57.895 2.07 0.00 38.94 4.18
82 83 2.117423 TCAGAGGAGCACCACCGA 59.883 61.111 2.07 0.00 38.94 4.69
83 84 2.099652 TTGTCAGAGGAGCACCACCG 62.100 60.000 2.07 0.00 38.94 4.94
84 85 0.321122 CTTGTCAGAGGAGCACCACC 60.321 60.000 2.07 0.00 38.94 4.61
85 86 0.952984 GCTTGTCAGAGGAGCACCAC 60.953 60.000 2.07 0.00 38.94 4.16
86 87 1.123861 AGCTTGTCAGAGGAGCACCA 61.124 55.000 2.07 0.00 38.85 4.17
87 88 0.036022 AAGCTTGTCAGAGGAGCACC 59.964 55.000 0.00 0.00 38.85 5.01
88 89 1.001860 AGAAGCTTGTCAGAGGAGCAC 59.998 52.381 2.10 2.39 38.85 4.40
89 90 1.001746 CAGAAGCTTGTCAGAGGAGCA 59.998 52.381 2.10 0.00 38.85 4.26
90 91 1.724429 CAGAAGCTTGTCAGAGGAGC 58.276 55.000 2.10 0.00 36.68 4.70
91 92 1.001746 TGCAGAAGCTTGTCAGAGGAG 59.998 52.381 2.10 0.00 42.74 3.69
92 93 1.051008 TGCAGAAGCTTGTCAGAGGA 58.949 50.000 2.10 0.00 42.74 3.71
93 94 1.534595 GTTGCAGAAGCTTGTCAGAGG 59.465 52.381 2.10 0.00 42.74 3.69
94 95 2.216046 TGTTGCAGAAGCTTGTCAGAG 58.784 47.619 2.10 0.00 42.74 3.35
95 96 2.330440 TGTTGCAGAAGCTTGTCAGA 57.670 45.000 2.10 0.00 42.74 3.27
96 97 2.287427 CCTTGTTGCAGAAGCTTGTCAG 60.287 50.000 2.10 0.00 42.74 3.51
97 98 1.677576 CCTTGTTGCAGAAGCTTGTCA 59.322 47.619 2.10 0.00 42.74 3.58
98 99 1.601412 GCCTTGTTGCAGAAGCTTGTC 60.601 52.381 2.10 0.00 42.74 3.18
99 100 0.386838 GCCTTGTTGCAGAAGCTTGT 59.613 50.000 2.10 0.00 42.74 3.16
100 101 0.672342 AGCCTTGTTGCAGAAGCTTG 59.328 50.000 2.10 0.00 42.74 4.01
101 102 1.406903 AAGCCTTGTTGCAGAAGCTT 58.593 45.000 0.00 0.00 42.74 3.74
102 103 2.276732 TAAGCCTTGTTGCAGAAGCT 57.723 45.000 2.68 0.00 42.74 3.74
103 104 2.229784 ACATAAGCCTTGTTGCAGAAGC 59.770 45.455 2.68 0.00 42.57 3.86
104 105 4.510038 AACATAAGCCTTGTTGCAGAAG 57.490 40.909 1.42 1.42 36.02 2.85
105 106 4.935352 AAACATAAGCCTTGTTGCAGAA 57.065 36.364 0.00 0.00 37.38 3.02
106 107 5.709631 TCATAAACATAAGCCTTGTTGCAGA 59.290 36.000 0.00 0.00 37.38 4.26
107 108 5.953183 TCATAAACATAAGCCTTGTTGCAG 58.047 37.500 0.00 0.00 37.38 4.41
108 109 5.973899 TCATAAACATAAGCCTTGTTGCA 57.026 34.783 0.00 0.00 37.38 4.08
109 110 6.644592 TGTTTCATAAACATAAGCCTTGTTGC 59.355 34.615 1.21 0.00 45.79 4.17
132 133 0.248580 CAGTGCAACAACACGCATGT 60.249 50.000 0.00 0.00 45.45 3.21
133 134 0.935831 CCAGTGCAACAACACGCATG 60.936 55.000 0.00 0.00 45.45 4.06
134 135 1.359833 CCAGTGCAACAACACGCAT 59.640 52.632 0.00 0.00 45.45 4.73
135 136 1.590610 AACCAGTGCAACAACACGCA 61.591 50.000 0.00 0.00 45.45 5.24
136 137 0.457681 AAACCAGTGCAACAACACGC 60.458 50.000 0.00 0.00 45.45 5.34
137 138 1.267365 CAAACCAGTGCAACAACACG 58.733 50.000 0.00 0.00 45.45 4.49
138 139 0.998669 GCAAACCAGTGCAACAACAC 59.001 50.000 0.00 0.00 44.29 3.32
139 140 3.432517 GCAAACCAGTGCAACAACA 57.567 47.368 0.00 0.00 44.29 3.33
146 147 1.285023 CTCAGCTGCAAACCAGTGC 59.715 57.895 9.47 0.00 43.71 4.40
147 148 1.170919 AGCTCAGCTGCAAACCAGTG 61.171 55.000 9.47 0.00 43.71 3.66
148 149 0.397941 TAGCTCAGCTGCAAACCAGT 59.602 50.000 10.31 0.00 43.71 4.00
149 150 1.400846 CATAGCTCAGCTGCAAACCAG 59.599 52.381 10.31 0.52 44.67 4.00
150 151 1.271543 ACATAGCTCAGCTGCAAACCA 60.272 47.619 10.31 0.00 40.10 3.67
151 152 1.457346 ACATAGCTCAGCTGCAAACC 58.543 50.000 10.31 0.00 40.10 3.27
152 153 3.190118 AGAAACATAGCTCAGCTGCAAAC 59.810 43.478 10.31 0.00 40.10 2.93
153 154 3.415212 AGAAACATAGCTCAGCTGCAAA 58.585 40.909 10.31 0.00 40.10 3.68
154 155 3.063510 AGAAACATAGCTCAGCTGCAA 57.936 42.857 10.31 0.00 40.10 4.08
155 156 2.775911 AGAAACATAGCTCAGCTGCA 57.224 45.000 10.31 0.00 40.10 4.41
156 157 5.106555 TGTTTAAGAAACATAGCTCAGCTGC 60.107 40.000 10.31 0.00 45.79 5.25
157 158 6.486253 TGTTTAAGAAACATAGCTCAGCTG 57.514 37.500 10.31 7.63 45.79 4.24
176 177 7.768120 ACATCATTGTAACAACACCAAATGTTT 59.232 29.630 0.00 0.00 40.71 2.83
177 178 7.224362 CACATCATTGTAACAACACCAAATGTT 59.776 33.333 0.00 0.00 42.76 2.71
178 179 6.700960 CACATCATTGTAACAACACCAAATGT 59.299 34.615 0.00 0.00 37.60 2.71
179 180 6.346758 GCACATCATTGTAACAACACCAAATG 60.347 38.462 0.00 0.00 33.76 2.32
180 181 5.695816 GCACATCATTGTAACAACACCAAAT 59.304 36.000 0.00 0.00 33.76 2.32
181 182 5.046529 GCACATCATTGTAACAACACCAAA 58.953 37.500 0.00 0.00 33.76 3.28
182 183 4.098501 TGCACATCATTGTAACAACACCAA 59.901 37.500 0.00 0.00 33.76 3.67
183 184 3.633986 TGCACATCATTGTAACAACACCA 59.366 39.130 0.00 0.00 33.76 4.17
184 185 4.235939 TGCACATCATTGTAACAACACC 57.764 40.909 0.00 0.00 33.76 4.16
185 186 5.518128 TGTTTGCACATCATTGTAACAACAC 59.482 36.000 0.00 0.00 31.91 3.32
186 187 5.654497 TGTTTGCACATCATTGTAACAACA 58.346 33.333 0.00 0.00 31.91 3.33
187 188 5.175491 CCTGTTTGCACATCATTGTAACAAC 59.825 40.000 0.00 0.00 33.60 3.32
188 189 5.288015 CCTGTTTGCACATCATTGTAACAA 58.712 37.500 0.00 0.00 33.60 2.83
189 190 4.261952 CCCTGTTTGCACATCATTGTAACA 60.262 41.667 0.00 0.00 33.19 2.41
190 191 4.022416 TCCCTGTTTGCACATCATTGTAAC 60.022 41.667 0.00 0.00 33.76 2.50
191 192 4.022416 GTCCCTGTTTGCACATCATTGTAA 60.022 41.667 0.00 0.00 33.76 2.41
192 193 3.505680 GTCCCTGTTTGCACATCATTGTA 59.494 43.478 0.00 0.00 33.76 2.41
193 194 2.297033 GTCCCTGTTTGCACATCATTGT 59.703 45.455 0.00 0.00 36.15 2.71
194 195 2.296752 TGTCCCTGTTTGCACATCATTG 59.703 45.455 0.00 0.00 30.39 2.82
195 196 2.297033 GTGTCCCTGTTTGCACATCATT 59.703 45.455 0.00 0.00 30.39 2.57
196 197 1.888512 GTGTCCCTGTTTGCACATCAT 59.111 47.619 0.00 0.00 30.39 2.45
197 198 1.317613 GTGTCCCTGTTTGCACATCA 58.682 50.000 0.00 0.00 30.39 3.07
198 199 0.238289 CGTGTCCCTGTTTGCACATC 59.762 55.000 0.00 0.00 30.39 3.06
199 200 0.465460 ACGTGTCCCTGTTTGCACAT 60.465 50.000 0.00 0.00 30.39 3.21
200 201 1.078072 ACGTGTCCCTGTTTGCACA 60.078 52.632 0.00 0.00 32.62 4.57
201 202 1.355210 CACGTGTCCCTGTTTGCAC 59.645 57.895 7.58 0.00 0.00 4.57
202 203 0.678366 AACACGTGTCCCTGTTTGCA 60.678 50.000 23.61 0.00 0.00 4.08
203 204 0.454196 AAACACGTGTCCCTGTTTGC 59.546 50.000 23.61 0.00 38.80 3.68
204 205 4.358494 TTTAAACACGTGTCCCTGTTTG 57.642 40.909 23.61 0.00 40.14 2.93
205 206 4.380761 GGTTTTAAACACGTGTCCCTGTTT 60.381 41.667 23.61 13.76 42.09 2.83
206 207 3.129113 GGTTTTAAACACGTGTCCCTGTT 59.871 43.478 23.61 14.52 31.76 3.16
207 208 2.684374 GGTTTTAAACACGTGTCCCTGT 59.316 45.455 23.61 2.14 0.00 4.00
208 209 2.033675 GGGTTTTAAACACGTGTCCCTG 59.966 50.000 25.88 0.52 0.00 4.45
209 210 2.300433 GGGTTTTAAACACGTGTCCCT 58.700 47.619 25.88 15.62 0.00 4.20
210 211 2.022934 TGGGTTTTAAACACGTGTCCC 58.977 47.619 26.23 26.23 37.72 4.46
211 212 3.634283 CATGGGTTTTAAACACGTGTCC 58.366 45.455 23.61 17.07 44.81 4.02
215 216 4.339814 ACATCACATGGGTTTTAAACACGT 59.660 37.500 10.14 4.46 37.72 4.49
216 217 4.865776 ACATCACATGGGTTTTAAACACG 58.134 39.130 10.14 0.00 37.72 4.49
217 218 5.050431 GCAACATCACATGGGTTTTAAACAC 60.050 40.000 10.14 6.65 34.64 3.32
218 219 5.053145 GCAACATCACATGGGTTTTAAACA 58.947 37.500 10.14 0.00 33.60 2.83
219 220 5.053145 TGCAACATCACATGGGTTTTAAAC 58.947 37.500 0.00 0.00 33.60 2.01
220 221 5.282055 TGCAACATCACATGGGTTTTAAA 57.718 34.783 0.00 0.00 33.60 1.52
221 222 4.944619 TGCAACATCACATGGGTTTTAA 57.055 36.364 0.00 0.00 33.60 1.52
222 223 4.626042 GTTGCAACATCACATGGGTTTTA 58.374 39.130 24.52 0.00 33.60 1.52
223 224 3.465871 GTTGCAACATCACATGGGTTTT 58.534 40.909 24.52 0.00 33.60 2.43
224 225 2.545532 CGTTGCAACATCACATGGGTTT 60.546 45.455 28.01 0.00 33.60 3.27
225 226 1.000385 CGTTGCAACATCACATGGGTT 60.000 47.619 28.01 0.00 33.60 4.11
226 227 0.597568 CGTTGCAACATCACATGGGT 59.402 50.000 28.01 0.00 33.60 4.51
227 228 0.109179 CCGTTGCAACATCACATGGG 60.109 55.000 28.01 14.83 33.60 4.00
228 229 0.597568 ACCGTTGCAACATCACATGG 59.402 50.000 28.01 20.33 33.60 3.66
229 230 1.666599 CCACCGTTGCAACATCACATG 60.667 52.381 28.01 15.24 0.00 3.21
230 231 0.597568 CCACCGTTGCAACATCACAT 59.402 50.000 28.01 4.58 0.00 3.21
231 232 0.749818 ACCACCGTTGCAACATCACA 60.750 50.000 28.01 0.00 0.00 3.58
232 233 0.040425 GACCACCGTTGCAACATCAC 60.040 55.000 28.01 10.77 0.00 3.06
233 234 1.502990 CGACCACCGTTGCAACATCA 61.503 55.000 28.01 0.00 0.00 3.07
234 235 1.206578 CGACCACCGTTGCAACATC 59.793 57.895 28.01 15.30 0.00 3.06
235 236 3.339731 CGACCACCGTTGCAACAT 58.660 55.556 28.01 13.58 0.00 2.71
241 242 3.708734 GAACCGCGACCACCGTTG 61.709 66.667 8.23 0.00 41.15 4.10
242 243 2.999739 AATGAACCGCGACCACCGTT 63.000 55.000 8.23 0.66 41.15 4.44
243 244 2.999739 AAATGAACCGCGACCACCGT 63.000 55.000 8.23 0.00 41.15 4.83
244 245 2.235536 GAAATGAACCGCGACCACCG 62.236 60.000 8.23 0.00 42.21 4.94
245 246 1.500396 GAAATGAACCGCGACCACC 59.500 57.895 8.23 0.00 0.00 4.61
246 247 1.500396 GGAAATGAACCGCGACCAC 59.500 57.895 8.23 0.00 0.00 4.16
247 248 2.030401 CGGAAATGAACCGCGACCA 61.030 57.895 8.23 1.99 43.74 4.02
248 249 2.782615 CGGAAATGAACCGCGACC 59.217 61.111 8.23 0.00 43.74 4.79
254 255 1.404047 CCCATGTTGCGGAAATGAACC 60.404 52.381 11.40 0.00 0.00 3.62
255 256 1.272212 ACCCATGTTGCGGAAATGAAC 59.728 47.619 11.40 0.00 0.00 3.18
256 257 1.626686 ACCCATGTTGCGGAAATGAA 58.373 45.000 11.40 0.00 0.00 2.57
257 258 2.498644 TACCCATGTTGCGGAAATGA 57.501 45.000 11.40 0.00 0.00 2.57
258 259 3.119173 ACAATACCCATGTTGCGGAAATG 60.119 43.478 0.00 0.00 30.35 2.32
259 260 3.096092 ACAATACCCATGTTGCGGAAAT 58.904 40.909 0.00 0.00 30.35 2.17
260 261 2.520069 ACAATACCCATGTTGCGGAAA 58.480 42.857 0.00 0.00 30.35 3.13
261 262 2.208132 ACAATACCCATGTTGCGGAA 57.792 45.000 0.00 0.00 30.35 4.30
262 263 2.208132 AACAATACCCATGTTGCGGA 57.792 45.000 0.00 0.00 39.43 5.54
263 264 3.311486 AAAACAATACCCATGTTGCGG 57.689 42.857 0.00 0.00 39.98 5.69
264 265 6.771188 TTTAAAAACAATACCCATGTTGCG 57.229 33.333 0.00 0.00 39.98 4.85
287 288 4.217767 GCAATCTCTCTAAACCGGGTTTTT 59.782 41.667 28.50 13.14 37.01 1.94
288 289 3.756963 GCAATCTCTCTAAACCGGGTTTT 59.243 43.478 28.50 13.79 37.01 2.43
289 290 3.244770 TGCAATCTCTCTAAACCGGGTTT 60.245 43.478 26.79 26.79 39.24 3.27
290 291 2.304761 TGCAATCTCTCTAAACCGGGTT 59.695 45.455 10.96 10.96 0.00 4.11
291 292 1.906574 TGCAATCTCTCTAAACCGGGT 59.093 47.619 6.32 0.00 0.00 5.28
292 293 2.678336 GTTGCAATCTCTCTAAACCGGG 59.322 50.000 6.32 0.00 0.00 5.73
293 294 3.334691 TGTTGCAATCTCTCTAAACCGG 58.665 45.455 0.59 0.00 0.00 5.28
294 295 3.372206 CCTGTTGCAATCTCTCTAAACCG 59.628 47.826 0.59 0.00 0.00 4.44
295 296 3.691609 CCCTGTTGCAATCTCTCTAAACC 59.308 47.826 0.59 0.00 0.00 3.27
296 297 3.127721 GCCCTGTTGCAATCTCTCTAAAC 59.872 47.826 0.59 0.00 0.00 2.01
297 298 3.009473 AGCCCTGTTGCAATCTCTCTAAA 59.991 43.478 0.59 0.00 0.00 1.85
298 299 2.573462 AGCCCTGTTGCAATCTCTCTAA 59.427 45.455 0.59 0.00 0.00 2.10
299 300 2.169352 GAGCCCTGTTGCAATCTCTCTA 59.831 50.000 0.59 0.00 0.00 2.43
300 301 0.990374 AGCCCTGTTGCAATCTCTCT 59.010 50.000 0.59 0.00 0.00 3.10
301 302 1.377536 GAGCCCTGTTGCAATCTCTC 58.622 55.000 0.59 2.12 0.00 3.20
302 303 0.034670 GGAGCCCTGTTGCAATCTCT 60.035 55.000 0.59 0.00 0.00 3.10
303 304 0.034670 AGGAGCCCTGTTGCAATCTC 60.035 55.000 0.59 4.91 29.57 2.75
304 305 0.323178 CAGGAGCCCTGTTGCAATCT 60.323 55.000 0.59 0.00 45.82 2.40
305 306 2.187073 CAGGAGCCCTGTTGCAATC 58.813 57.895 0.59 0.00 45.82 2.67
306 307 4.428845 CAGGAGCCCTGTTGCAAT 57.571 55.556 0.59 0.00 45.82 3.56
314 315 1.377994 CTTCTGCAACAGGAGCCCT 59.622 57.895 0.00 0.00 29.66 5.19
315 316 1.676967 CCTTCTGCAACAGGAGCCC 60.677 63.158 5.03 0.00 35.85 5.19
316 317 2.338785 GCCTTCTGCAACAGGAGCC 61.339 63.158 14.00 0.00 35.85 4.70
317 318 2.338785 GGCCTTCTGCAACAGGAGC 61.339 63.158 14.00 0.31 43.89 4.70
318 319 2.037136 CGGCCTTCTGCAACAGGAG 61.037 63.158 14.00 0.00 43.89 3.69
319 320 2.032528 CGGCCTTCTGCAACAGGA 59.967 61.111 14.00 0.00 43.89 3.86
320 321 2.032528 TCGGCCTTCTGCAACAGG 59.967 61.111 0.00 6.49 43.89 4.00
321 322 2.684843 GCTCGGCCTTCTGCAACAG 61.685 63.158 0.00 0.00 43.89 3.16
322 323 2.669569 GCTCGGCCTTCTGCAACA 60.670 61.111 0.00 0.00 43.89 3.33
323 324 2.359230 AGCTCGGCCTTCTGCAAC 60.359 61.111 0.00 0.00 43.89 4.17
324 325 2.046892 GAGCTCGGCCTTCTGCAA 60.047 61.111 0.00 0.00 43.89 4.08
325 326 2.882677 TTGAGCTCGGCCTTCTGCA 61.883 57.895 9.64 0.00 43.89 4.41
326 327 2.046892 TTGAGCTCGGCCTTCTGC 60.047 61.111 9.64 0.00 40.16 4.26
327 328 0.392193 ATGTTGAGCTCGGCCTTCTG 60.392 55.000 9.64 0.00 0.00 3.02
328 329 1.137872 CTATGTTGAGCTCGGCCTTCT 59.862 52.381 9.64 0.00 0.00 2.85
329 330 1.137086 TCTATGTTGAGCTCGGCCTTC 59.863 52.381 9.64 0.00 0.00 3.46
330 331 1.195115 TCTATGTTGAGCTCGGCCTT 58.805 50.000 9.64 0.39 0.00 4.35
331 332 1.342819 GATCTATGTTGAGCTCGGCCT 59.657 52.381 9.64 0.00 0.00 5.19
332 333 1.342819 AGATCTATGTTGAGCTCGGCC 59.657 52.381 9.64 0.00 0.00 6.13
333 334 2.799412 CAAGATCTATGTTGAGCTCGGC 59.201 50.000 9.64 4.78 33.31 5.54
334 335 4.052159 ACAAGATCTATGTTGAGCTCGG 57.948 45.455 9.64 0.00 35.30 4.63
335 336 6.414408 AAAACAAGATCTATGTTGAGCTCG 57.586 37.500 18.05 0.00 39.98 5.03
336 337 9.766277 CTTTAAAACAAGATCTATGTTGAGCTC 57.234 33.333 18.05 6.82 39.98 4.09
337 338 8.734386 CCTTTAAAACAAGATCTATGTTGAGCT 58.266 33.333 18.05 0.00 39.98 4.09
338 339 8.730680 TCCTTTAAAACAAGATCTATGTTGAGC 58.269 33.333 18.05 0.00 39.98 4.26
365 366 7.415653 GCGATCTCTCCATGAACCTTTATTTTT 60.416 37.037 0.00 0.00 0.00 1.94
366 367 6.038714 GCGATCTCTCCATGAACCTTTATTTT 59.961 38.462 0.00 0.00 0.00 1.82
367 368 5.529060 GCGATCTCTCCATGAACCTTTATTT 59.471 40.000 0.00 0.00 0.00 1.40
368 369 5.059833 GCGATCTCTCCATGAACCTTTATT 58.940 41.667 0.00 0.00 0.00 1.40
369 370 4.101585 TGCGATCTCTCCATGAACCTTTAT 59.898 41.667 0.00 0.00 0.00 1.40
370 371 3.450817 TGCGATCTCTCCATGAACCTTTA 59.549 43.478 0.00 0.00 0.00 1.85
371 372 2.237143 TGCGATCTCTCCATGAACCTTT 59.763 45.455 0.00 0.00 0.00 3.11
372 373 1.833630 TGCGATCTCTCCATGAACCTT 59.166 47.619 0.00 0.00 0.00 3.50
373 374 1.489481 TGCGATCTCTCCATGAACCT 58.511 50.000 0.00 0.00 0.00 3.50
374 375 1.936547 GTTGCGATCTCTCCATGAACC 59.063 52.381 0.00 0.00 0.00 3.62
375 376 2.621338 TGTTGCGATCTCTCCATGAAC 58.379 47.619 0.00 0.00 0.00 3.18
376 377 3.264947 CTTGTTGCGATCTCTCCATGAA 58.735 45.455 0.00 0.00 0.00 2.57
377 378 2.419159 CCTTGTTGCGATCTCTCCATGA 60.419 50.000 0.00 0.00 0.00 3.07
378 379 1.938577 CCTTGTTGCGATCTCTCCATG 59.061 52.381 0.00 0.00 0.00 3.66
379 380 1.745141 GCCTTGTTGCGATCTCTCCAT 60.745 52.381 0.00 0.00 0.00 3.41
380 381 0.391661 GCCTTGTTGCGATCTCTCCA 60.392 55.000 0.00 0.00 0.00 3.86
381 382 0.107945 AGCCTTGTTGCGATCTCTCC 60.108 55.000 0.00 0.00 36.02 3.71
382 383 1.285578 GAGCCTTGTTGCGATCTCTC 58.714 55.000 0.00 0.00 36.02 3.20
383 384 0.107945 GGAGCCTTGTTGCGATCTCT 60.108 55.000 0.00 0.00 36.02 3.10
384 385 0.107945 AGGAGCCTTGTTGCGATCTC 60.108 55.000 0.00 0.00 36.02 2.75
385 386 0.392193 CAGGAGCCTTGTTGCGATCT 60.392 55.000 0.00 0.00 36.02 2.75
386 387 0.674895 ACAGGAGCCTTGTTGCGATC 60.675 55.000 0.00 0.00 36.02 3.69
387 388 0.250901 AACAGGAGCCTTGTTGCGAT 60.251 50.000 2.65 0.00 36.02 4.58
388 389 1.148273 AACAGGAGCCTTGTTGCGA 59.852 52.632 2.65 0.00 36.02 5.10
389 390 1.283793 CAACAGGAGCCTTGTTGCG 59.716 57.895 14.10 0.00 36.86 4.85
390 391 1.537202 CTACAACAGGAGCCTTGTTGC 59.463 52.381 21.62 0.00 44.62 4.17
391 392 3.126001 TCTACAACAGGAGCCTTGTTG 57.874 47.619 20.70 20.70 45.77 3.33
392 393 3.391296 TCTTCTACAACAGGAGCCTTGTT 59.609 43.478 0.00 0.10 28.57 2.83
393 394 2.972713 TCTTCTACAACAGGAGCCTTGT 59.027 45.455 0.09 0.09 28.57 3.16
394 395 3.330267 GTCTTCTACAACAGGAGCCTTG 58.670 50.000 0.00 0.00 28.57 3.61
395 396 2.028930 CGTCTTCTACAACAGGAGCCTT 60.029 50.000 0.00 0.00 28.57 4.35
396 397 1.546476 CGTCTTCTACAACAGGAGCCT 59.454 52.381 0.00 0.00 28.57 4.58
397 398 1.404315 CCGTCTTCTACAACAGGAGCC 60.404 57.143 0.00 0.00 28.57 4.70
398 399 1.544691 TCCGTCTTCTACAACAGGAGC 59.455 52.381 0.00 0.00 28.57 4.70
399 400 2.416162 GCTCCGTCTTCTACAACAGGAG 60.416 54.545 4.38 4.38 44.69 3.69
400 401 1.544691 GCTCCGTCTTCTACAACAGGA 59.455 52.381 0.00 0.00 0.00 3.86
401 402 1.404315 GGCTCCGTCTTCTACAACAGG 60.404 57.143 0.00 0.00 0.00 4.00
402 403 1.404315 GGGCTCCGTCTTCTACAACAG 60.404 57.143 0.00 0.00 0.00 3.16
403 404 0.606604 GGGCTCCGTCTTCTACAACA 59.393 55.000 0.00 0.00 0.00 3.33
404 405 0.606604 TGGGCTCCGTCTTCTACAAC 59.393 55.000 0.00 0.00 0.00 3.32
405 406 1.001633 GTTGGGCTCCGTCTTCTACAA 59.998 52.381 0.00 0.00 0.00 2.41
406 407 0.606604 GTTGGGCTCCGTCTTCTACA 59.393 55.000 0.00 0.00 0.00 2.74
407 408 0.606604 TGTTGGGCTCCGTCTTCTAC 59.393 55.000 0.00 0.00 0.00 2.59
408 409 0.606604 GTGTTGGGCTCCGTCTTCTA 59.393 55.000 0.00 0.00 0.00 2.10
409 410 1.371558 GTGTTGGGCTCCGTCTTCT 59.628 57.895 0.00 0.00 0.00 2.85
410 411 0.534203 TTGTGTTGGGCTCCGTCTTC 60.534 55.000 0.00 0.00 0.00 2.87
411 412 0.106918 TTTGTGTTGGGCTCCGTCTT 60.107 50.000 0.00 0.00 0.00 3.01
412 413 0.110486 ATTTGTGTTGGGCTCCGTCT 59.890 50.000 0.00 0.00 0.00 4.18
413 414 1.816074 TATTTGTGTTGGGCTCCGTC 58.184 50.000 0.00 0.00 0.00 4.79
414 415 1.883926 GTTATTTGTGTTGGGCTCCGT 59.116 47.619 0.00 0.00 0.00 4.69
415 416 2.159382 AGTTATTTGTGTTGGGCTCCG 58.841 47.619 0.00 0.00 0.00 4.63
416 417 3.913089 CAAGTTATTTGTGTTGGGCTCC 58.087 45.455 0.00 0.00 31.92 4.70
449 450 2.678190 GCCCCGAATAGCCATGAGTATC 60.678 54.545 0.00 0.00 0.00 2.24
450 451 1.279271 GCCCCGAATAGCCATGAGTAT 59.721 52.381 0.00 0.00 0.00 2.12
451 452 0.685097 GCCCCGAATAGCCATGAGTA 59.315 55.000 0.00 0.00 0.00 2.59
452 453 1.451936 GCCCCGAATAGCCATGAGT 59.548 57.895 0.00 0.00 0.00 3.41
453 454 1.669115 CGCCCCGAATAGCCATGAG 60.669 63.158 0.00 0.00 0.00 2.90
454 455 2.425592 CGCCCCGAATAGCCATGA 59.574 61.111 0.00 0.00 0.00 3.07
455 456 3.357079 GCGCCCCGAATAGCCATG 61.357 66.667 0.00 0.00 0.00 3.66
459 460 2.033194 GTATGGCGCCCCGAATAGC 61.033 63.158 26.77 6.21 0.00 2.97
460 461 0.250124 TTGTATGGCGCCCCGAATAG 60.250 55.000 26.77 0.00 0.00 1.73
461 462 0.533308 GTTGTATGGCGCCCCGAATA 60.533 55.000 26.77 12.37 0.00 1.75
462 463 1.822186 GTTGTATGGCGCCCCGAAT 60.822 57.895 26.77 13.56 0.00 3.34
463 464 2.437002 GTTGTATGGCGCCCCGAA 60.437 61.111 26.77 4.98 0.00 4.30
464 465 4.823419 CGTTGTATGGCGCCCCGA 62.823 66.667 26.77 5.45 0.00 5.14
470 471 2.582202 CTTGGCAGCGTTGTATGGCG 62.582 60.000 0.00 0.00 44.42 5.69
471 472 1.137404 CTTGGCAGCGTTGTATGGC 59.863 57.895 0.00 0.00 42.01 4.40
472 473 0.447801 GTCTTGGCAGCGTTGTATGG 59.552 55.000 0.00 0.00 0.00 2.74
473 474 0.095245 CGTCTTGGCAGCGTTGTATG 59.905 55.000 0.00 0.00 0.00 2.39
474 475 1.019278 CCGTCTTGGCAGCGTTGTAT 61.019 55.000 0.00 0.00 0.00 2.29
475 476 1.666553 CCGTCTTGGCAGCGTTGTA 60.667 57.895 0.00 0.00 0.00 2.41
476 477 2.972505 CCGTCTTGGCAGCGTTGT 60.973 61.111 0.00 0.00 0.00 3.32
477 478 2.954753 GACCGTCTTGGCAGCGTTG 61.955 63.158 0.00 0.00 43.94 4.10
478 479 2.665185 GACCGTCTTGGCAGCGTT 60.665 61.111 7.25 0.00 43.94 4.84
481 482 4.681978 ACCGACCGTCTTGGCAGC 62.682 66.667 0.00 0.00 43.94 5.25
482 483 2.432628 GACCGACCGTCTTGGCAG 60.433 66.667 0.00 0.00 43.94 4.85
483 484 3.998672 GGACCGACCGTCTTGGCA 61.999 66.667 0.00 0.00 43.94 4.92
484 485 2.726822 AAAGGACCGACCGTCTTGGC 62.727 60.000 0.00 0.00 43.94 4.52
485 486 0.250166 AAAAGGACCGACCGTCTTGG 60.250 55.000 0.00 0.00 44.74 3.61
486 487 2.029649 TCTAAAAGGACCGACCGTCTTG 60.030 50.000 0.00 0.00 44.74 3.02
487 488 2.242043 TCTAAAAGGACCGACCGTCTT 58.758 47.619 0.00 0.00 44.74 3.01
488 489 1.915141 TCTAAAAGGACCGACCGTCT 58.085 50.000 0.00 0.00 44.74 4.18
489 490 2.955477 ATCTAAAAGGACCGACCGTC 57.045 50.000 0.00 0.00 44.74 4.79
490 491 4.403432 TGATAATCTAAAAGGACCGACCGT 59.597 41.667 0.00 0.00 44.74 4.83
491 492 4.743644 GTGATAATCTAAAAGGACCGACCG 59.256 45.833 0.00 0.00 44.74 4.79
492 493 5.055144 GGTGATAATCTAAAAGGACCGACC 58.945 45.833 0.00 0.00 39.35 4.79
493 494 5.055144 GGGTGATAATCTAAAAGGACCGAC 58.945 45.833 0.00 0.00 0.00 4.79
494 495 4.202182 CGGGTGATAATCTAAAAGGACCGA 60.202 45.833 0.00 0.00 38.77 4.69
495 496 4.056050 CGGGTGATAATCTAAAAGGACCG 58.944 47.826 0.00 0.00 0.00 4.79
496 497 4.386711 CCGGGTGATAATCTAAAAGGACC 58.613 47.826 0.00 0.00 0.00 4.46
497 498 3.813724 GCCGGGTGATAATCTAAAAGGAC 59.186 47.826 2.18 0.00 0.00 3.85
498 499 3.181448 GGCCGGGTGATAATCTAAAAGGA 60.181 47.826 2.18 0.00 0.00 3.36
499 500 3.146847 GGCCGGGTGATAATCTAAAAGG 58.853 50.000 2.18 0.00 0.00 3.11
500 501 2.806244 CGGCCGGGTGATAATCTAAAAG 59.194 50.000 20.10 0.00 0.00 2.27
501 502 2.435069 TCGGCCGGGTGATAATCTAAAA 59.565 45.455 27.83 0.00 0.00 1.52
502 503 2.040939 TCGGCCGGGTGATAATCTAAA 58.959 47.619 27.83 0.00 0.00 1.85
503 504 1.707106 TCGGCCGGGTGATAATCTAA 58.293 50.000 27.83 0.00 0.00 2.10
504 505 1.548719 CATCGGCCGGGTGATAATCTA 59.451 52.381 27.83 0.12 0.00 1.98
505 506 0.321671 CATCGGCCGGGTGATAATCT 59.678 55.000 27.83 0.00 0.00 2.40
506 507 1.298859 GCATCGGCCGGGTGATAATC 61.299 60.000 27.83 7.68 0.00 1.75
507 508 1.302511 GCATCGGCCGGGTGATAAT 60.303 57.895 27.83 6.33 0.00 1.28
508 509 2.110213 GCATCGGCCGGGTGATAA 59.890 61.111 27.83 3.54 0.00 1.75
509 510 4.293648 CGCATCGGCCGGGTGATA 62.294 66.667 27.83 4.46 36.38 2.15
536 537 6.209391 CCTATTCATAGCTAATTGTTTGGGGG 59.791 42.308 0.00 0.00 0.00 5.40
537 538 7.004086 TCCTATTCATAGCTAATTGTTTGGGG 58.996 38.462 0.00 0.00 0.00 4.96
538 539 7.721399 ACTCCTATTCATAGCTAATTGTTTGGG 59.279 37.037 0.00 0.00 0.00 4.12
539 540 8.682936 ACTCCTATTCATAGCTAATTGTTTGG 57.317 34.615 0.00 0.00 0.00 3.28
543 544 9.686683 ACAAAACTCCTATTCATAGCTAATTGT 57.313 29.630 0.00 0.00 0.00 2.71
572 573 8.826710 CCGAGCATTCATGTTTTAGATTTAGTA 58.173 33.333 0.00 0.00 0.00 1.82
573 574 7.679638 GCCGAGCATTCATGTTTTAGATTTAGT 60.680 37.037 0.00 0.00 0.00 2.24
574 575 6.634436 GCCGAGCATTCATGTTTTAGATTTAG 59.366 38.462 0.00 0.00 0.00 1.85
575 576 6.459573 GGCCGAGCATTCATGTTTTAGATTTA 60.460 38.462 0.00 0.00 0.00 1.40
576 577 5.343249 GCCGAGCATTCATGTTTTAGATTT 58.657 37.500 0.00 0.00 0.00 2.17
577 578 4.202050 GGCCGAGCATTCATGTTTTAGATT 60.202 41.667 0.00 0.00 0.00 2.40
578 579 3.316308 GGCCGAGCATTCATGTTTTAGAT 59.684 43.478 0.00 0.00 0.00 1.98
579 580 2.682856 GGCCGAGCATTCATGTTTTAGA 59.317 45.455 0.00 0.00 0.00 2.10
580 581 2.423185 TGGCCGAGCATTCATGTTTTAG 59.577 45.455 0.00 0.00 0.00 1.85
581 582 2.423185 CTGGCCGAGCATTCATGTTTTA 59.577 45.455 0.00 0.00 0.00 1.52
582 583 1.203052 CTGGCCGAGCATTCATGTTTT 59.797 47.619 0.00 0.00 0.00 2.43
583 584 0.813184 CTGGCCGAGCATTCATGTTT 59.187 50.000 0.00 0.00 0.00 2.83
584 585 0.035152 TCTGGCCGAGCATTCATGTT 60.035 50.000 0.00 0.00 0.00 2.71
605 606 3.119245 ACGAGTACAGTGTGTTCACAACT 60.119 43.478 5.88 7.35 46.01 3.16
654 659 5.975939 GTCCTAATCGCATTTAAGTAGACGT 59.024 40.000 0.00 0.00 0.00 4.34
655 660 5.975344 TGTCCTAATCGCATTTAAGTAGACG 59.025 40.000 0.00 0.00 0.00 4.18
656 661 7.948278 ATGTCCTAATCGCATTTAAGTAGAC 57.052 36.000 0.00 0.00 0.00 2.59
657 662 8.421784 AGAATGTCCTAATCGCATTTAAGTAGA 58.578 33.333 0.00 0.00 33.56 2.59
658 663 8.491152 CAGAATGTCCTAATCGCATTTAAGTAG 58.509 37.037 0.00 0.00 33.56 2.57
659 664 7.441157 CCAGAATGTCCTAATCGCATTTAAGTA 59.559 37.037 0.00 0.00 33.56 2.24
660 665 6.260936 CCAGAATGTCCTAATCGCATTTAAGT 59.739 38.462 0.00 0.00 33.56 2.24
662 667 5.008613 GCCAGAATGTCCTAATCGCATTTAA 59.991 40.000 0.00 0.00 33.56 1.52
663 668 4.515191 GCCAGAATGTCCTAATCGCATTTA 59.485 41.667 0.00 0.00 33.56 1.40
664 669 3.316308 GCCAGAATGTCCTAATCGCATTT 59.684 43.478 0.00 0.00 33.56 2.32
665 670 2.880890 GCCAGAATGTCCTAATCGCATT 59.119 45.455 0.00 0.00 35.78 3.56
666 671 2.105477 AGCCAGAATGTCCTAATCGCAT 59.895 45.455 0.00 0.00 0.00 4.73
669 674 3.535561 ACAAGCCAGAATGTCCTAATCG 58.464 45.455 0.00 0.00 0.00 3.34
670 675 4.439289 GCAACAAGCCAGAATGTCCTAATC 60.439 45.833 0.00 0.00 37.23 1.75
671 676 3.445096 GCAACAAGCCAGAATGTCCTAAT 59.555 43.478 0.00 0.00 37.23 1.73
673 678 2.224744 TGCAACAAGCCAGAATGTCCTA 60.225 45.455 0.00 0.00 44.83 2.94
674 679 1.251251 GCAACAAGCCAGAATGTCCT 58.749 50.000 0.00 0.00 37.23 3.85
675 680 0.961019 TGCAACAAGCCAGAATGTCC 59.039 50.000 0.00 0.00 44.83 4.02
676 681 4.096833 TCATATGCAACAAGCCAGAATGTC 59.903 41.667 0.00 0.00 44.83 3.06
679 684 3.067742 GCTCATATGCAACAAGCCAGAAT 59.932 43.478 0.00 0.00 44.83 2.40
680 685 2.424601 GCTCATATGCAACAAGCCAGAA 59.575 45.455 0.00 0.00 44.83 3.02
681 686 2.019249 GCTCATATGCAACAAGCCAGA 58.981 47.619 0.00 0.00 44.83 3.86
682 687 2.486951 GCTCATATGCAACAAGCCAG 57.513 50.000 0.00 0.00 44.83 4.85
686 691 2.009051 TCACGGCTCATATGCAACAAG 58.991 47.619 0.00 0.00 34.04 3.16
688 693 1.338579 TGTCACGGCTCATATGCAACA 60.339 47.619 0.00 0.00 34.04 3.33
698 703 2.094659 CACGTCCATGTCACGGCTC 61.095 63.158 16.33 0.00 41.73 4.70
700 705 2.357034 ACACGTCCATGTCACGGC 60.357 61.111 16.33 0.00 41.73 5.68
701 706 0.878523 AACACACGTCCATGTCACGG 60.879 55.000 16.33 9.29 41.73 4.94
776 799 0.385751 ATGGTGTATCGGAGCGACTG 59.614 55.000 0.00 0.00 39.18 3.51
786 809 7.248437 GCGGGCTAATTTATTAATGGTGTATC 58.752 38.462 0.00 0.00 0.00 2.24
828 851 7.286313 AGTTTGCTTTTGGGGATTTTTATGAA 58.714 30.769 0.00 0.00 0.00 2.57
868 898 4.154347 CTGGCTGGACGGAGGAGC 62.154 72.222 0.00 0.00 0.00 4.70
882 939 4.124943 ATCTGGCTGGCTGGCTGG 62.125 66.667 20.51 12.93 42.34 4.85
968 1053 2.788191 GATGGATCGGGGGATCGTGC 62.788 65.000 0.00 0.00 32.60 5.34
969 1054 1.293498 GATGGATCGGGGGATCGTG 59.707 63.158 0.00 0.00 32.60 4.35
970 1055 1.913762 GGATGGATCGGGGGATCGT 60.914 63.158 0.00 0.00 32.60 3.73
971 1056 2.660064 GGGATGGATCGGGGGATCG 61.660 68.421 0.00 0.00 32.60 3.69
972 1057 2.301738 GGGGATGGATCGGGGGATC 61.302 68.421 0.00 0.00 0.00 3.36
973 1058 2.204151 GGGGATGGATCGGGGGAT 60.204 66.667 0.00 0.00 0.00 3.85
974 1059 4.592337 GGGGGATGGATCGGGGGA 62.592 72.222 0.00 0.00 0.00 4.81
996 1083 3.325201 GAACCCTAGGTGGTGGCGG 62.325 68.421 8.29 0.00 39.05 6.13
998 1085 2.267961 CGAACCCTAGGTGGTGGC 59.732 66.667 8.29 0.00 39.05 5.01
1001 1088 4.125239 GGACGAACCCTAGGTGGT 57.875 61.111 8.29 0.00 41.55 4.16
1566 1668 3.959991 GACGAGCAGGTTGAGCCCC 62.960 68.421 0.00 0.00 38.26 5.80
1569 1671 1.446966 GGAGACGAGCAGGTTGAGC 60.447 63.158 0.00 0.00 0.00 4.26
1686 1788 0.395311 AGGTGCTGCCCATGAATGAG 60.395 55.000 9.36 0.00 38.26 2.90
1734 1841 1.532868 GCCCTTGGATCGAATCGAATG 59.467 52.381 10.12 0.00 39.99 2.67
1778 1903 3.364889 TTCCGTAGCATTACATCCTCG 57.635 47.619 0.00 0.00 0.00 4.63
1780 1905 6.119536 TGAAATTTCCGTAGCATTACATCCT 58.880 36.000 15.48 0.00 0.00 3.24
1793 1918 5.246429 AGACTAGGAAGACTGAAATTTCCGT 59.754 40.000 14.24 14.24 44.00 4.69
1794 1919 5.578727 CAGACTAGGAAGACTGAAATTTCCG 59.421 44.000 15.48 11.61 44.99 4.30
1797 1922 8.816894 TCATACAGACTAGGAAGACTGAAATTT 58.183 33.333 10.95 0.00 44.99 1.82
1798 1923 8.367660 TCATACAGACTAGGAAGACTGAAATT 57.632 34.615 10.95 0.00 44.99 1.82
1802 1927 5.044772 ACCTCATACAGACTAGGAAGACTGA 60.045 44.000 10.95 0.00 44.99 3.41
1811 1936 8.325787 AGATCCTATACACCTCATACAGACTAG 58.674 40.741 0.00 0.00 0.00 2.57
1823 1948 5.700402 AGCAAACAAGATCCTATACACCT 57.300 39.130 0.00 0.00 0.00 4.00
1942 2067 6.928492 GCAACATCTTACAAAATTTCCCTTGA 59.072 34.615 0.00 0.00 0.00 3.02
1989 2114 7.982354 GCTTTATTTCCATCACTAGTCAGTAGT 59.018 37.037 0.00 0.00 43.31 2.73
2002 2127 8.761575 TGAATTTCACAAGCTTTATTTCCATC 57.238 30.769 0.00 0.00 0.00 3.51
2003 2128 8.370182 ACTGAATTTCACAAGCTTTATTTCCAT 58.630 29.630 0.00 0.00 0.00 3.41
2057 2182 9.280174 CCCTGTTACTCTGTTAGTTAATTCAAA 57.720 33.333 0.00 0.00 39.80 2.69
2138 2264 2.225547 ACCCAACTCTGGAGCTTACCTA 60.226 50.000 0.00 0.00 46.92 3.08
2146 2272 3.629398 GCAATATGAACCCAACTCTGGAG 59.371 47.826 0.00 0.00 46.92 3.86
2148 2274 3.624777 AGCAATATGAACCCAACTCTGG 58.375 45.455 0.00 0.00 43.10 3.86
2255 2381 7.148120 GCTGACCTGTTACTATGTTAGTGTAGA 60.148 40.741 0.00 0.00 39.81 2.59
2382 2512 9.443283 CAAAGTTGTGAAGAGAAGAAAATACAG 57.557 33.333 0.00 0.00 0.00 2.74
2394 2524 4.981806 TGTTTCCCAAAGTTGTGAAGAG 57.018 40.909 0.00 0.00 0.00 2.85
2587 2717 1.839994 TGGAGGGAACATGCTCTTAGG 59.160 52.381 0.00 0.00 0.00 2.69
2676 2806 4.750598 GGGAACAGTTGACTCTGAAGTTAC 59.249 45.833 0.00 0.00 38.63 2.50
2868 3001 1.134098 CCCTGATGGCTACCATTTCGT 60.134 52.381 0.00 0.00 45.26 3.85
2936 3073 0.179065 TCGGATCTGCTGCCATCTTG 60.179 55.000 0.00 0.00 0.00 3.02
2942 3079 0.873054 CATGAATCGGATCTGCTGCC 59.127 55.000 0.00 0.00 0.00 4.85
2943 3080 0.873054 CCATGAATCGGATCTGCTGC 59.127 55.000 0.00 0.00 0.00 5.25
2966 3103 3.441163 CAAATCAGAATCCAATGCACGG 58.559 45.455 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.