>input_sequence_62757
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----------------------------------------------CACCACC---TAGGGTTCGTC------------C
CTCCCTCCGCCATGTCCTCCTCCACGGCCTCCTGGTCGCGCTACGGCGCCGTCCCGGCCCCGCCCCCGCCGCCGCGGCCC
GACGCGAACGGCGGCTTCGAGGCGGCGCCCTCCCCCTCCTCCTCCCCCGCCTCCCCGCCGGCGGCGACCGCGGCGGAGGC
GGGGGTGGCCTTCTTCTCGCGCGCGGGGGCCAGCGCCGCGGCCGCCGCGGCCGTCGGCCGGCCGCGGGCCTGGCGGGAGG
TGCTGGACCACACGGCCTTCTCGCGCCCGGAGACCTGCGGCGAGGCGCGCGCCCGGGCCCGCCGCAACCTCGCCTACTTC
CGCGCCAACTACGCGCTCGCGGCGCTCGTCCTCGTCTTCCTCGGCCTCGTCTACCGCCCGCGCTCCATGCTCGCCTTCCT
CGCCCTCTTCGTCGCCTGGCTCGCGCTCTACTTCGGCCGCGGCGGGGACGCGGGCCCGCTCGTCTGCCTCGGCCGCGACG
TCGACGACCGCGTCGTGCTCGCCGTCCTCTCCGCCGCCACCGTGCTCGCCGTCGCGCTCACCCGCGCGGGGCTCAACCTG
CTCGTCTCCCTCGTCCTCGCCTCCGCCCTCATCGGCGTGCACGCCGCCTTCCGCATGAACGTCTACCTCGACGAGAGGGA
CGCCTTCGACGGGGACGCCGCCGTCTCCTCATTCATGGGCAGCACCTACGGCTACAGCACGCTCCC-----GAGATGAGG
CATTCGATTCGATCCAAGGGCGTT------------------TCTTCCGATCCTCTGTTCTTCGAGGATGTAATGCTACG
GAAATTTCAGTCTTCCTAGTCTGTATGAGGTGTATAGGATCTTGTTTGCTTTCCCTTTTGCGGGGAGTTTTGATTTGTTT
GTAGTCAGTCCACTTGGTGTTCAAGTGAAATTCTTAAGCTGATTGTGATGATCTGAAGCTGTTTTTTCAAGGGAAATTTT
GTAAGATGTTGCTCCAAGGTGTAAATCATCCCTACTACTGACTAGTGATGGAAATAAAGCTTGTGAAATTCA--------
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>chr5A_1_TraesCS5A01G443300
CACGAGAAGCGTTGCTGCGAGAAAGGCCAACCGCCGCAACCGACCATCGATGTTGCAAAGCGGCGTCCGTGCTTCGATAA
CATCGGTGGTGCTCCTCTGACAAGCTTCTGCAACAAGGCTTATGTTTATGAAACATGCGTGTTGTTGCACTGGTTTGCAG
CTGAGCTATGTTTCTTAAACATTTGGTGTTGTTACAATGATGTGCAAACAGGGACACGTGTTTAAAACCCATGTGATGTT
GCAACGGTGGTCGCGGTTCATTTCCGCAACATGGGTATTGTTTTTAAAAAAACCCGGTTTAGAGAGATTGCAACAGGGCT
CCTGTTGCAGAAGGCCGAGCTCAACATAGATCTTGTTTTAAAGGAAAAAATAAAGGTTCATGGAGAGATCGCAACAAGGC
TCCTGTTGTAGAAGACGGAGCCCAACACAAATAACTTGTTATAAAGGTTGATACTCATGGCTATTCGGGGCGCCATACAA
CGCTGCCAAGACGGTCGGTCCTTTTAGATTATCACCCGGCCGATGCGTAGCGCTGCCCCCCAAACAATTAGCTATGAATA
GGAGTTTTGTATTACTAAATCTAAAACATGAATGCTCGGCCAGAAAGTTGTGAAC----ACACTGTACTCGTTCCACGCT
AATACGCCGCAAATTAACACGTCTACTTAAATGCGATTAGGACATTCTGGCTTGTTGCATATGAGCCGTG----------
-----ACATGGACGTGTGTTTGTTTGTCGAAGGAG---CCATTCCCAGCCGCTCGATCGGATCTGCCGACGTCCCAACCA
GTCGCTCCGATACACCATTAATAAATTAGCCCGCGAATTGGCCAATTGGGTTCATAAAAATCCCCAAAAGCAAAC-----
--TTTTCCCTTTGCCCTG---------------------------CTCCTCCGTCCAGCC-----AG--CCAGCCAGCCA
GATCCACTCGACAAAAACCGATCGATCGATCGACCGAG--------GCCAG-------------CCAGCAACAGCAATCA
ATCACGGCACGAGCACGATCCCCCGATCCATCC--CCCCTCCCCGCCACCACC---TAGGGTTCGTC------------C
CTCCCTCCGCCATGTCCTCCTCCACGGCCTCCTGGTCGCGCTACGGCGCCGTCCCGGCCCCGCCCCCGCCGCCGCGGCCC
GACGCGAACGGCGGCTTCGAGGCGGCGCCCTCCCCCTCCTCCTCCCCCGCCTCCCCGCCGGCGGCGACCGCGGCGGAGGC
GGGGGTGGCCTTCTTCTCGCGCGCGGGGGCCAGCGCCGCGGCCGCCGCGGCCGTCGGCCGGCCGCGGGCCTGGCGGGAGG
TGCTGGACCACACGGCCTTCTCGCGCCCGGAGACCTGCGGCGAGGCGCGCGCCCGGGCCCGCCGCAACCTCGCCTACTTC
CGCGCCAACTACGCGCTCGCGGCGCTCGTCCTCGTCTTCCTCGGCCTCGTCTACCGCCCGCGCTCCATGCTCGCCTTCCT
CGCCCTCTTCGTCGCCTGGCTCGCGCTCTACTTCGGCCGCGGCGGGGACGCGGGCCCGCTCGTCTGCCTCGGCCGCGACG
TCGACGACCGCGTCGTGCTCGCCGTCCTCTCCGCCGCCACCGTGCTCGCCGTCGCGCTCACCCGCGCGGGGCTCAACCTG
CTCGTCTCCCTCGTCCTCGCCTCCGCCCTCATCGGCGTGCACGCCGCCTTCCGCATGAACGTCTACCTCGACGAGAGGGA
CGCCTTCGACGGGGACGCCGCCGTCTCCTCATTCATGGGCAGCACCTACGGCTACAGCACGCTCCC-----GAGATGAGG
CATTCGATTCGATCCAAGGGCGTT------------------TCTTCCGATCCTCTGTTCTTCGAGGATGTAATGCTACG
GAAATTTCAGTCTTCCTAGTCTGTATGAGGTGTATAGGATCTTGTTTGCTTTCCCTTTTGCGGGGAGTTTTGATTTGTTT
GTAGTCAGTCCACTTGGTGTTCAAGTGAAATTCTTAAGCTGATTGTGATGATCTGAAGCTGTTTTTTCAAGGGAAATTTT
GTAAGATGTTGCTCCAAGGTGTAAATCATCCCTACTACTGACTAGTGATGGAAATAAAGCTTGTGAAATTCAGTGTATCT
TGCTATGTTCTTATGTACCATTTTGAATTAACTAACAGAGTAACAGGGCCAACACAGAAGATTGATTC-TTGGAAAAGCT
GATACATGAAAGAGATCAGCTGATAGGTAAGCTCCAGAGTTGGGTTCATATTGCTACTATGTTTTCTTCTCTTCACAACT
TTGGAGAACAACAATTGTTTTCGATGATGCTAAATCCTCATTCATAAATTCTGATGTATGTC--TACACTAACATAGTAA
CAGGTCAGCAAAGGAGATTCTTAAGGAAGTGGATACATGAAAGAGATCAAGTGACAAAGTGAGCTCAAGAGTTGGTATCA
TGTGACTAGT--AAAAAAGGTAGAATGCTACCTGTATTTTCTTCTCTTCACAACTTTGGGAAACAACAATAGATTTTGAT
GGTGGTAATTCTTGTACTTGTAAAGAACAGAAAACTGCATTCATTTATTCAATCATATAAACCTCTTGGTATTGTTTTAC
AGTTGCTGTTTACTAGGATTATGCCCCCAATTCCAAGAGTATGTTCCCTCTGTTTACTAAAGATTATGCCCCCACTCCTA
AGAGCATGTTCCCTCCACCAACATCCTGATGTTTTTAATCCTCCTTACAACAGATGCACATAAAGATTCATGTGACCAGC
CTGTAGTAACTTCAGAGTCAACTGTTCCCAGAATTTATATAGGGCCCAGTGATAAATTAAGTCCCACTTGGACCATGTCT
---TCAGTTAACTTAAGCGGCTTGGCATCGATGGCTTGCTTGAGCTTCCTCCCTAGCGCGTATGCAAGGGGAGGTGGTAC
CGCATTCCCGATCTGCCTGTGCTTGCTCCGGATGTTGCCAACGAAATGGTAGCCATCAGGGAAGCCCTGCATTCATGTCA
TGTTGTGGGATCAGATCAGAGTCTTCAA----CAAGATGGCAGCAGATCCGATTCATGGCAACCGTGCATTGGATTCTGA
TTTGCCTGTGCCTGCCCTGGAGGTTAAGCCAGACGGGAAACGAG
>chr5D_577
AAATTCTTAG----------------------------------------------------------------------
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-------------------------ACATGAATGCTCGGCCAGAACGTTGTGAATAGTAACACTGTACACGTTCCACGCT
AATACGCCGGAAATTAACGGCGGGTCAAGTCTGATCTGGACACTC---GGTTCGTTGCATATTAATCGTGACATGGACAG
----TACATGGACGTTTGTTTGTGTGTCGAAGGAGGGGCCATTATCAGCCGCTCGATCGGATCTGCCGACGTCCCAACTA
GTCGCTCCAATACACCATTAATAAATTAGCCCGCGAATTGGCCAA----------------------AAGCAAAC-----
--TTTTCCCTTT---------------CTTCCCCTGCTCCTCTCTCTCCCCCGTCCAAGCCAGCCAGCCCCAGCCAGCCA
GATCCACTCGACAAAACCCGATCGCTCGACCCGTCGACCGATCAAAGCCAGCCCACGCCCACGCCCAGCAACAGCAATCA
ATCACGGCACGA--------------TCCCCCGATCCCCACCTCCCCTCCACC---TAGGGTT----------------C
CTCCCTCCGCCATGTCCTCCTCCACGGCCTCCTGGTCGCGCTACGGCGCCGTCCCGGCCCCGCCCCCGCCGCCGCGGCCC
GACGCGAACGGCGACTTCGAGGCGGCGCCCTCCTCCTCCTCCTCCCCCGCCTCCCCGCCGGCGGCGACCGCGGCGGAGGC
GGGGGTGGCCTTCTTCTCGCGCGCGGGGGCCAGCGCCGCGGCCGCCGCGGCCGTGGGCCGGCCGCGCGCCTGGCGGGAGG
TGCTGGACCACACGGCCTTCTCCCGCCCGGAGACCTGCGGCGAGGCGCGCGCCCGGGCGCGCCGCAACCTCGCCTACTTC
CGCGCCAACTACGCGCTCGCGGCGCTCGTCCTCGTCTTCCTCGGCCTCGTCTACCGCCCGCGCTCCATGCTCGCCTTCCT
CGCCCTCTTCGTCGCCTGGCTCGCCCTCTACTTCGGCCGCGGCGGGGACGCGGGGCCGCTCGTCTGCCTCGGCCGCGACG
TCGACGACCGCGTCGTGCTCGCCGTCCTCTCCGCCGCCACCGTGCTCGCCGTCGCGCTCACCCGCGCCGGCCTCAACCTG
CTCGTCTCCCTCGTCCTCGCCTCCGCCCTCATCGGCGTGCACGCCGCCTTCCGCATGAACGTCTACCTGGACGAGAGGGA
CGCCTTCGACGCCGACGCCGCCGTCTCGTCATTCATGGGGAGCACCTACGGCTACAGCACGCTCCCAAAATGAGACGAGG
AATTCGATTCGATCCAAGGCGTTTCTTCCTGAGTGTGGCTCCTCTTCTCATCCTCTGTTCTTGGCGGATGTAATGCTCTG
GG-ATTGCAGTCTTCGTAGTCTGTATGCCGTGTATAGGATCTTGTTTGCTTTCCCTTTTGCGGGGAGTTTTGATTTGTTT
GTAGCCAGTCCACTTGGTGTTCAAGTGAAATTCTTAAGCTGATTGTGATGATCTGAATCTGTTTTT-CAAGGGAAGTTTT
GTAAGATGTTGCTCCAAGGTGTAAATCATCCCTCCTACTGACTAGTTGTGGAAATAAAGCTTGTGAAATTCAGTGTATCT
TCCTATGTTCTTATGTACCA--TTGAATTAACTAACAGAGTAACAGGGCCAACACAGAAGATTGATTC-TTGGAAAAGCT
GATACATGAAAGAGATCAGCTGACAGGTAAGGTGCAGAGTTGGCTTCATATTGCTAATATATTTTCTTTTCTTCACAACT
TTGGAGAACAGCAGTTGATTTTGACGATGGT-AATCCTCACTTATAAATTCTTATGTATGAATATACACTAACAGAGTAA
TAGGTCAGCACAGGAGATTCTTAAGGAAGTGGATACATGAAAGAGATCAAGTGACAAAGTGAGCTCAAGAGTTGGTATCA
TGTGACTAGT--A-AAAAGGTAGAATGCTAC-TGTATTTTCATTTCTTCACAACTTTGGGAAACAACAATAGGTTTTGAT
GGTGGTAATTCTT--ACTTGTAAAGAACAGAAAACTGCATTCATTTATTCAATCATATAACCCTCTTGGTATTGTTTTAC
AGTTGCTGTTTACTAAGATTATGCCCCCAATTCCAAGAGTATGTTCCCTCTGTTTACTAAAGATTATGCCCCCACTACTA
AGAGCATGTTCCCTCCACCAACATCCTGATGATTTTAATCCTCCTTACAACAGATGCACATAAAGATTCATGTGACCAGC
CTGTAATAACTTCAGAGTCAACTGTTCCCAGAATTTATATAGGGCCCAGCGATAAATTAAGTCCCACTTGGACCATGTCT
TCATCAGTTAACTTAAGCGGCTTGGCATCGATGGCTTGCTTGAGCTTCCTCCCTAGCGCGTATGCAAGGGGAGGTGGTAC
CGCATTCCCGATCTGCCTGTGCTTGCTCCGGATGTTGCCAGCGAAACGGTAGCCATCAGGGAAGCCCTGCATTCATGTCA
TGTTGTGGGATCAGATCAGAGTCTTCAATCAAAAAGATAACAGAAGATCCGATTCATGGCAA-CGTGCATTGGATTCTGA
TTTGCCTGTGCCTGCCCTGGAGGTTAAGCCAGACGGCAAACAAG
>chr5B_577
AAATTCTTAG----------------------------------------------------------------------
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-------------------------ACATGAATGCTCGGCCAGAGCATTGTG---AGTAACACTGTACACGTTCCACGCT
AATACGCCTCAAATTAACGGCCGGTCAAGTCTGATTTGGACACTC---GGTTCGTTGCATATTAATCGTGACATGGACAG
TACATACATGGACTTGTGTTTGTTTGTCGAAGGAG---CCATTCTCAGCCGCTCGATCGGATCTGCCGACGTCCCAACTA
GTCGCTCCAATACACCAT---TAAATTAGCCCGCGAATTGGCCAATTGGGATCATAAAAATCCCCAAAAGCAAACCATTT
TTTTTTGCCTTTGCCCTCTCCCTTCCCCTGCCTCTGCCTCTCTCTCTCCCCCGTCCAAGGCTCCAAG--CCAGCCAGCCA
GATCCACTCGACAAAACCCGATCGATCGGTCGCTCGACCGATCAAAGCCAG-------------CCAGCAACAGCAATCA
ATCACGGCACGA--------------TCCATCC--CCCCTCCTCCCCTCCACCATCTAGGGTTCGTCCCTCCCTCCCTCC
CTCCCCCAGCCATGTCCTCCTCCACCGTCTCCTGGTCGCGCTACGGCGCCGTCCCGGCCCCGCCCCCGCCGCCGCGGCCC
GACGCGAACGGCGACTTCGAGGCGGCGCCCTCCTCCTCC---TCCCCCGCCTCCCCGCCGGCGGCGACCGCGGCGGAGGC
GGGGGTGGCCTTCTTCTCGCGCGCGGGGGCCGGCGCCGCGGCCGCCGCGGCGGTCGGCCGGCCGCGGGCGTGGCGGGAGG
TGCTGGACCACACGGCCTTCTCCCGCCCGGAGACCTGCGGCGAGGCGCGCGCCCGGGCGCGCCGCAACCTCGCCTACTTC
CGCGCCAACTACGCGCTCGCGGCGCTCGTCCTCGTCTTCGTGGGACTCGTCTACCGCCCGCGCTCCATGCTCGCCTTCCT
CGCCCTCTTCGTCGCCTGGCTCGCCCTCTACTTCGGCCGCGGCGGGGACGCCGCCCCGCTCGTCTGCCTCGGCCGCGACG
TCGACGACCGCGTCGTGCTCGCCGTCCTCTCCGCCGCCACCGTGCTCGCCGTCGCGCTCACCCGCGCCGGCCTCAACCTG
CTCGTCTCCCTCGTCCTCGCCTCCGCCCTCATCGGCGTGCACGCCGCGTTCCGCATGAACGTCTACCTCGACGAGAGGGA
CTCCTTCGACGGGGACGCCGCCGTCTCTTCATTCATGGGGAGCACCTACGGCTACAGCACGCTCCCAAAATGAGATGACG
AATTCGATTCGATCCAAGCCGTTTCTTCCTGAGTGTGGCTCCTCTTCTCATCCTCTGTTCTTGGCGGATGTAATGCTCTG
GG-ATTGCAATCTTCGTAGTCTGTATGCGGTGTATAGGATATTGTTTGCTTTCCCTTTTGTGGGGAGTTTTGATTTGTTT
GTAGTCAGTCCACTTGGTGTTCAAGTGAAATTCTTAAGCTGATTGTGATGATCCGAATCTGTTTTT-CAAGGGAAATTTT
GTAAGATGTTGCTCCAAGGTGTAAATCATCCCTCCTACTGACTAGTTGTGAAAATAAAGCTTGTGAAATTCAATGTATCT
TGCTATGTTCTTATGCATCA--TTGAATTAACTAACACAGTAACAGGGCCAGCACGGAAGATTTGGTTTTTGGAAAAGCT
GATACATGAAAGAGATCAGCTGACAGGCAAGGTGCAGAGTTGGGTTCATATTGCTACTATGTTTTCTTCTCTTCACAACT
TTGGAGAACAACAATTGTTTTCGATGATGCTAAATCCTCATTCATAAATTCTGATGTATGAC--TACACTAACATAGTAA
CAGGTCAGCAAAGGAGATTCTTAAGGAAGTGGATACATGAAAGAGATCAAGTGACAAAGTGAGCTCAAGAGTTGGTATCA
TGTTACTAGTAAA-AAAAGGTAGAATGCTAC-TGTATTTTCTTTTCTTCACAACTTTGGGAAACAACAATAGATTTTGAT
GGTGGTAATTCTT--ACTTGTAAAGAACAGAAAACTGCATTCATTTATTCAATCATATAACCCTCTTGGTATTTTTTTAC
AGTTGCTGTTTACTAGGATTATG-CCCCAATTCCAAGAGTATGTTCCCTCTGTTTACTAAAGATTATGCACCCACTGCTA
AGAGCATGTTCCCTCCACCAACATCCTGATGTTTTTAATCCTCCTTACAATAGATGCACATAAAGATTCATGTCACCAGC
CTGTAATAACTTCAGAGTCAACTGTTCCCAGAATTTATATAGGGCCCAGTTGTAAATTAAGTCCCACTTGGATCATGTCT
TCA---GTTAACTTAGGCAGCTTGGCATCGATGGCTTGCTTGAGCTTCCTCCCTAGCGCGTATGCAAGGGGAGGTGGTAC
CGCATTCCCGATCTGCCTGTGCTTGCTCTGGATGTTGCCAGCGAAATGGTAGCCATCAGGGAAGCCCTGCATTCATGTCA
TGTTGTGGGATCAGATCAGAGTCTTGAA----AAAGATAACAGCAGATCCGATTCATGGCAA-CGTGCATTGGATTCTGA
TTTGTCCGTGCCTGCCCTGGAGGTTAAGCCAGACGGCAAACGAG
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS--------------------S--------S-------------S-----------
------------------SSSSSSS-SSSSS--SSS-SSSS--SSSSS--S-S---------S-SS--------------
--------------------------------------------S---------------------------------S-
--------S-----------------------------------------S-----------------------------
-----------------S-------------------------------S-------SS---------------------
----------------S---------------SS---S------------------------------------------
------------SSSSSSSSSSSSSS----------------S-S--S--------------------------------
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-------------S-------------------S----------------------------------------------
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----------------------S-----------------------------------S---------------------
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------------------------S-------------------------------------------------------
-------------------------------------------------------------------S--S---------
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---------------------------S-----------S----------------------------------------
S------------------SSS-------------------------SS-------------S-S------------SS-
-SS---S--------S-----------S----------------------------------------------------
---------------------------------------------------------S--------S-------------
---------------------------------S------------SS--------------------------------
--------------------SS----------------------------------------------------------
-----------------------S-------S-S----------------------------------------------
------------------------------------------------------------S-------------------
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-------------S-----------------S-----------S------------------------------------
-------------SS---------------------------------------------S-------------------
----------------------------------------------------------------------------S---
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-----S--------------------------------------------------------------------------
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----------------------------------------S---------------------------------------
--------------------------------S-----SS----------------------S-----------------
------------------------------------S-------
>forward_322
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--------------------------------------------------------------AGAGATTGCAACAGGGCT
CC------------------------------------------------------------------------------
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>reverse_1788
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---------------------------CTCATTCATGGGCAGCACCT---------------------------------
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>forward_493
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-------------------------------------------------------------------------CATACAA
CGCTGCCAAGACG-------------------------------------------------------------------
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>reverse_1841
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CATTCGATTCGATCCAAGGGC-----------------------------------------------------------
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>forward_663
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---ACGCCGCAAATTAACACGTC---------------------------------------------------------
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>reverse_2717
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----------------------------------------------------------------------------CCTA
AGAGCATGTTCCCTCCA---------------------------------------------------------------
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