Multiple sequence alignment - TraesCS5A01G433700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G433700 chr5A 100.000 2408 0 0 1 2408 617186438 617188845 0.000000e+00 4447.0
1 TraesCS5A01G433700 chr5A 87.850 1070 58 37 1363 2408 617174809 617175830 0.000000e+00 1190.0
2 TraesCS5A01G433700 chr5A 95.238 357 17 0 1009 1365 617204483 617204839 1.250000e-157 566.0
3 TraesCS5A01G433700 chr5A 85.778 225 25 7 282 500 529164579 529164356 5.180000e-57 231.0
4 TraesCS5A01G433700 chr5A 88.462 52 4 2 286 335 494974594 494974645 7.190000e-06 62.1
5 TraesCS5A01G433700 chr5D 90.467 1049 79 12 1363 2408 494182655 494183685 0.000000e+00 1363.0
6 TraesCS5A01G433700 chr5D 93.041 388 22 4 983 1365 494189041 494189428 1.620000e-156 562.0
7 TraesCS5A01G433700 chr5D 95.219 251 10 2 489 739 257351639 257351887 1.730000e-106 396.0
8 TraesCS5A01G433700 chr5D 81.102 127 8 8 314 440 429302089 429302199 1.190000e-13 87.9
9 TraesCS5A01G433700 chr5B 90.010 1051 80 13 1363 2408 610294684 610295714 0.000000e+00 1336.0
10 TraesCS5A01G433700 chr5B 90.080 373 31 4 996 1365 610301000 610301369 1.670000e-131 479.0
11 TraesCS5A01G433700 chr5B 92.790 319 20 1 1047 1365 655432286 655432601 2.180000e-125 459.0
12 TraesCS5A01G433700 chr5B 84.568 324 13 17 770 1056 655431803 655432126 1.090000e-73 287.0
13 TraesCS5A01G433700 chr5B 87.449 247 13 6 50 284 655431453 655431693 3.950000e-68 268.0
14 TraesCS5A01G433700 chr5B 80.519 231 19 10 294 500 711285511 711285283 1.150000e-33 154.0
15 TraesCS5A01G433700 chr5B 78.824 170 22 12 281 441 695987193 695987357 4.240000e-18 102.0
16 TraesCS5A01G433700 chr2D 97.872 235 5 0 495 729 367230898 367231132 8.010000e-110 407.0
17 TraesCS5A01G433700 chr2D 96.667 240 6 2 489 728 465158721 465158958 4.820000e-107 398.0
18 TraesCS5A01G433700 chr2D 82.635 167 20 8 282 441 354267610 354267774 3.230000e-29 139.0
19 TraesCS5A01G433700 chr4D 96.680 241 6 2 489 729 326116409 326116647 1.340000e-107 399.0
20 TraesCS5A01G433700 chr4D 95.238 252 9 3 489 739 49656657 49656906 1.730000e-106 396.0
21 TraesCS5A01G433700 chr1D 96.311 244 8 1 497 739 180858228 180857985 1.340000e-107 399.0
22 TraesCS5A01G433700 chr1D 82.456 114 5 8 327 440 252283856 252283758 4.270000e-13 86.1
23 TraesCS5A01G433700 chr7A 94.821 251 11 2 489 739 329131593 329131841 8.070000e-105 390.0
24 TraesCS5A01G433700 chr7A 90.541 148 12 2 354 500 554556678 554556532 6.790000e-46 195.0
25 TraesCS5A01G433700 chr7A 82.540 126 6 7 316 441 64169126 64169017 1.970000e-16 97.1
26 TraesCS5A01G433700 chr7A 77.600 125 12 8 316 440 224311309 224311201 7.190000e-06 62.1
27 TraesCS5A01G433700 chr7A 88.235 51 5 1 271 321 46297057 46297106 2.590000e-05 60.2
28 TraesCS5A01G433700 chr1B 95.851 241 10 0 499 739 274083690 274083450 8.070000e-105 390.0
29 TraesCS5A01G433700 chr3D 94.821 251 10 3 489 739 529686278 529686031 2.900000e-104 388.0
30 TraesCS5A01G433700 chr4B 84.783 322 42 6 1046 1365 109222449 109222765 1.390000e-82 316.0
31 TraesCS5A01G433700 chr4A 80.168 358 51 16 1013 1360 508494597 508494250 1.430000e-62 250.0
32 TraesCS5A01G433700 chr4A 80.317 315 50 11 1050 1360 508358225 508357919 6.700000e-56 228.0
33 TraesCS5A01G433700 chr4A 94.382 89 5 0 353 441 646108722 646108634 1.160000e-28 137.0
34 TraesCS5A01G433700 chr4A 82.716 162 20 7 286 441 658405687 658405528 1.160000e-28 137.0
35 TraesCS5A01G433700 chr2B 83.568 213 27 6 294 500 341556097 341555887 2.440000e-45 193.0
36 TraesCS5A01G433700 chr2B 97.368 38 1 0 283 320 707872528 707872491 5.560000e-07 65.8
37 TraesCS5A01G433700 chr3A 84.431 167 20 5 280 441 733919766 733919601 2.480000e-35 159.0
38 TraesCS5A01G433700 chr3A 83.436 163 19 7 285 441 648022197 648022037 6.940000e-31 145.0
39 TraesCS5A01G433700 chr3A 93.750 48 2 1 285 331 564428359 564428406 1.190000e-08 71.3
40 TraesCS5A01G433700 chr2A 85.621 153 16 5 294 441 56912439 56912288 3.210000e-34 156.0
41 TraesCS5A01G433700 chr2A 88.095 126 13 2 377 500 264303367 264303492 5.360000e-32 148.0
42 TraesCS5A01G433700 chr2A 85.124 121 11 5 358 475 361311241 361311125 1.510000e-22 117.0
43 TraesCS5A01G433700 chr2A 81.746 126 7 8 316 441 423178409 423178300 9.170000e-15 91.6
44 TraesCS5A01G433700 chr2A 89.394 66 7 0 376 441 576071240 576071175 1.530000e-12 84.2
45 TraesCS5A01G433700 chr2A 79.839 124 9 10 318 441 30808066 30807959 2.570000e-10 76.8
46 TraesCS5A01G433700 chr2A 79.839 124 9 10 318 441 30828556 30828449 2.570000e-10 76.8
47 TraesCS5A01G433700 chr6D 84.459 148 23 0 353 500 317003824 317003677 1.930000e-31 147.0
48 TraesCS5A01G433700 chr6A 79.654 231 21 9 294 500 557411553 557411781 2.500000e-30 143.0
49 TraesCS5A01G433700 chr6A 82.209 163 17 8 286 440 93769555 93769713 1.940000e-26 130.0
50 TraesCS5A01G433700 chr1A 77.824 239 27 12 286 500 493941771 493942007 9.040000e-25 124.0
51 TraesCS5A01G433700 chr1A 100.000 33 0 0 738 770 319887444 319887412 7.190000e-06 62.1
52 TraesCS5A01G433700 chr7D 91.176 68 6 0 433 500 595092511 595092578 2.550000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G433700 chr5A 617186438 617188845 2407 False 4447 4447 100.000 1 2408 1 chr5A.!!$F3 2407
1 TraesCS5A01G433700 chr5A 617174809 617175830 1021 False 1190 1190 87.850 1363 2408 1 chr5A.!!$F2 1045
2 TraesCS5A01G433700 chr5D 494182655 494183685 1030 False 1363 1363 90.467 1363 2408 1 chr5D.!!$F3 1045
3 TraesCS5A01G433700 chr5B 610294684 610295714 1030 False 1336 1336 90.010 1363 2408 1 chr5B.!!$F1 1045
4 TraesCS5A01G433700 chr5B 655431453 655432601 1148 False 338 459 88.269 50 1365 3 chr5B.!!$F4 1315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 525 0.115745 TGTTACTCCCTCCGGTCCTT 59.884 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2538 0.450184 CACGGGCCTATTCCAAAACG 59.55 55.0 0.84 0.0 0.0 3.6 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.117241 CACGTAGAAATGTAACTGACAATGT 57.883 36.000 0.00 0.00 42.78 2.71
25 26 7.572759 CACGTAGAAATGTAACTGACAATGTT 58.427 34.615 0.00 0.00 42.78 2.71
26 27 8.067784 CACGTAGAAATGTAACTGACAATGTTT 58.932 33.333 0.00 0.00 42.78 2.83
27 28 9.263538 ACGTAGAAATGTAACTGACAATGTTTA 57.736 29.630 0.00 0.00 42.78 2.01
28 29 9.525007 CGTAGAAATGTAACTGACAATGTTTAC 57.475 33.333 0.00 0.00 42.78 2.01
29 30 9.525007 GTAGAAATGTAACTGACAATGTTTACG 57.475 33.333 0.00 0.00 42.78 3.18
30 31 7.581476 AGAAATGTAACTGACAATGTTTACGG 58.419 34.615 0.00 0.00 42.78 4.02
31 32 6.870971 AATGTAACTGACAATGTTTACGGT 57.129 33.333 0.00 0.00 42.78 4.83
32 33 5.660629 TGTAACTGACAATGTTTACGGTG 57.339 39.130 0.00 0.00 34.15 4.94
33 34 5.117584 TGTAACTGACAATGTTTACGGTGT 58.882 37.500 0.00 0.00 34.15 4.16
34 35 5.585445 TGTAACTGACAATGTTTACGGTGTT 59.415 36.000 0.00 0.00 34.15 3.32
35 36 5.570234 AACTGACAATGTTTACGGTGTTT 57.430 34.783 0.00 0.00 0.00 2.83
36 37 4.915704 ACTGACAATGTTTACGGTGTTTG 58.084 39.130 0.00 0.00 0.00 2.93
37 38 4.396790 ACTGACAATGTTTACGGTGTTTGT 59.603 37.500 0.00 0.00 0.00 2.83
38 39 5.585445 ACTGACAATGTTTACGGTGTTTGTA 59.415 36.000 0.00 0.00 0.00 2.41
39 40 6.261381 ACTGACAATGTTTACGGTGTTTGTAT 59.739 34.615 0.00 0.00 0.00 2.29
40 41 7.028926 TGACAATGTTTACGGTGTTTGTATT 57.971 32.000 0.00 0.00 0.00 1.89
41 42 7.133513 TGACAATGTTTACGGTGTTTGTATTC 58.866 34.615 0.00 0.00 0.00 1.75
42 43 6.440436 ACAATGTTTACGGTGTTTGTATTCC 58.560 36.000 0.00 0.00 0.00 3.01
43 44 4.728917 TGTTTACGGTGTTTGTATTCCG 57.271 40.909 0.00 0.00 46.98 4.30
44 45 4.375272 TGTTTACGGTGTTTGTATTCCGA 58.625 39.130 9.37 0.00 44.86 4.55
45 46 4.210955 TGTTTACGGTGTTTGTATTCCGAC 59.789 41.667 9.37 0.00 44.86 4.79
46 47 2.825861 ACGGTGTTTGTATTCCGACT 57.174 45.000 9.37 0.00 44.86 4.18
47 48 3.940209 ACGGTGTTTGTATTCCGACTA 57.060 42.857 9.37 0.00 44.86 2.59
48 49 4.460948 ACGGTGTTTGTATTCCGACTAT 57.539 40.909 9.37 0.00 44.86 2.12
64 65 4.440663 CCGACTATGAGTCAATGAAGAGCA 60.441 45.833 0.00 0.00 45.30 4.26
68 69 6.047870 ACTATGAGTCAATGAAGAGCATCAC 58.952 40.000 0.00 0.00 37.82 3.06
69 70 3.256558 TGAGTCAATGAAGAGCATCACG 58.743 45.455 0.00 0.00 37.82 4.35
78 79 6.741992 ATGAAGAGCATCACGTATCAAAAA 57.258 33.333 0.00 0.00 37.82 1.94
79 80 6.169419 TGAAGAGCATCACGTATCAAAAAG 57.831 37.500 0.00 0.00 37.82 2.27
81 82 6.426633 TGAAGAGCATCACGTATCAAAAAGAA 59.573 34.615 0.00 0.00 37.82 2.52
84 85 7.910304 AGAGCATCACGTATCAAAAAGAATAC 58.090 34.615 0.00 0.00 37.82 1.89
85 86 7.549134 AGAGCATCACGTATCAAAAAGAATACA 59.451 33.333 0.00 0.00 37.82 2.29
86 87 8.213518 AGCATCACGTATCAAAAAGAATACAT 57.786 30.769 0.00 0.00 0.00 2.29
87 88 8.338259 AGCATCACGTATCAAAAAGAATACATC 58.662 33.333 0.00 0.00 0.00 3.06
127 128 6.421501 CAGCTCTCTAGATATGTTGCTTTCAG 59.578 42.308 0.00 0.00 0.00 3.02
131 132 7.711846 TCTCTAGATATGTTGCTTTCAGTCTC 58.288 38.462 0.00 0.00 0.00 3.36
153 157 7.862372 GTCTCTGCTGATTTGTTTGATTGTTAA 59.138 33.333 0.00 0.00 0.00 2.01
197 210 3.186047 CTTCAACGTAGCCGCCCG 61.186 66.667 0.00 0.00 37.70 6.13
208 221 2.818274 CCGCCCGCACCTTCTTAC 60.818 66.667 0.00 0.00 0.00 2.34
238 251 1.005569 CCCCATCCATCCATCATCCTG 59.994 57.143 0.00 0.00 0.00 3.86
247 260 3.354948 TCCATCATCCTGGACACTTTG 57.645 47.619 0.00 0.00 40.43 2.77
248 261 1.747355 CCATCATCCTGGACACTTTGC 59.253 52.381 0.00 0.00 38.69 3.68
272 285 6.128145 GCCTGTCCTTTTCTTGTCTCTAATTC 60.128 42.308 0.00 0.00 0.00 2.17
284 297 8.926710 TCTTGTCTCTAATTCGTCTGAAATTTC 58.073 33.333 11.41 11.41 37.71 2.17
287 300 9.923143 TGTCTCTAATTCGTCTGAAATTTCTAA 57.077 29.630 18.64 4.56 37.71 2.10
289 302 9.587772 TCTCTAATTCGTCTGAAATTTCTAAGG 57.412 33.333 18.64 11.80 37.71 2.69
294 307 9.503399 AATTCGTCTGAAATTTCTAAGGTTAGT 57.497 29.630 18.64 3.62 37.71 2.24
295 308 8.530269 TTCGTCTGAAATTTCTAAGGTTAGTC 57.470 34.615 18.64 3.77 32.61 2.59
296 309 7.663827 TCGTCTGAAATTTCTAAGGTTAGTCA 58.336 34.615 18.64 0.00 32.61 3.41
297 310 8.311836 TCGTCTGAAATTTCTAAGGTTAGTCAT 58.688 33.333 18.64 0.00 32.61 3.06
298 311 9.582431 CGTCTGAAATTTCTAAGGTTAGTCATA 57.418 33.333 18.64 0.00 32.61 2.15
302 315 9.667107 TGAAATTTCTAAGGTTAGTCATAGTGG 57.333 33.333 18.64 0.00 32.61 4.00
303 316 9.110502 GAAATTTCTAAGGTTAGTCATAGTGGG 57.889 37.037 11.05 0.00 32.61 4.61
304 317 6.555463 TTTCTAAGGTTAGTCATAGTGGGG 57.445 41.667 0.00 0.00 32.61 4.96
305 318 5.476950 TCTAAGGTTAGTCATAGTGGGGA 57.523 43.478 0.00 0.00 32.61 4.81
306 319 5.845734 TCTAAGGTTAGTCATAGTGGGGAA 58.154 41.667 0.00 0.00 32.61 3.97
307 320 6.449956 TCTAAGGTTAGTCATAGTGGGGAAT 58.550 40.000 0.00 0.00 32.61 3.01
308 321 7.598248 TCTAAGGTTAGTCATAGTGGGGAATA 58.402 38.462 0.00 0.00 32.61 1.75
309 322 8.069356 TCTAAGGTTAGTCATAGTGGGGAATAA 58.931 37.037 0.00 0.00 32.61 1.40
310 323 6.496144 AGGTTAGTCATAGTGGGGAATAAC 57.504 41.667 0.00 0.00 41.37 1.89
311 324 6.210522 AGGTTAGTCATAGTGGGGAATAACT 58.789 40.000 10.50 0.00 41.64 2.24
312 325 6.677076 AGGTTAGTCATAGTGGGGAATAACTT 59.323 38.462 10.50 2.47 41.64 2.66
313 326 7.847848 AGGTTAGTCATAGTGGGGAATAACTTA 59.152 37.037 10.50 0.00 41.64 2.24
314 327 8.148999 GGTTAGTCATAGTGGGGAATAACTTAG 58.851 40.741 10.50 0.00 41.64 2.18
315 328 8.921205 GTTAGTCATAGTGGGGAATAACTTAGA 58.079 37.037 0.00 0.00 39.89 2.10
316 329 7.362802 AGTCATAGTGGGGAATAACTTAGAC 57.637 40.000 0.00 0.00 33.07 2.59
317 330 7.133483 AGTCATAGTGGGGAATAACTTAGACT 58.867 38.462 0.00 0.00 35.89 3.24
318 331 8.287350 AGTCATAGTGGGGAATAACTTAGACTA 58.713 37.037 0.00 0.00 37.46 2.59
319 332 8.578151 GTCATAGTGGGGAATAACTTAGACTAG 58.422 40.741 0.00 0.00 31.58 2.57
320 333 8.287350 TCATAGTGGGGAATAACTTAGACTAGT 58.713 37.037 0.00 0.00 0.00 2.57
321 334 6.793505 AGTGGGGAATAACTTAGACTAGTG 57.206 41.667 0.00 0.00 0.00 2.74
322 335 6.262207 AGTGGGGAATAACTTAGACTAGTGT 58.738 40.000 0.00 0.00 0.00 3.55
323 336 6.380560 AGTGGGGAATAACTTAGACTAGTGTC 59.619 42.308 0.00 0.00 43.22 3.67
324 337 6.154021 GTGGGGAATAACTTAGACTAGTGTCA 59.846 42.308 0.00 0.00 45.20 3.58
325 338 6.901300 TGGGGAATAACTTAGACTAGTGTCAT 59.099 38.462 0.00 0.00 45.20 3.06
326 339 7.147724 TGGGGAATAACTTAGACTAGTGTCATG 60.148 40.741 0.00 0.00 45.20 3.07
327 340 7.147707 GGGGAATAACTTAGACTAGTGTCATGT 60.148 40.741 0.00 0.00 45.20 3.21
328 341 8.258708 GGGAATAACTTAGACTAGTGTCATGTT 58.741 37.037 0.00 5.38 45.20 2.71
359 372 9.734620 TCTTCATAATGCAAAGTAACATAATGC 57.265 29.630 0.00 0.00 37.52 3.56
367 380 8.514136 TGCAAAGTAACATAATGCAAAGTAAC 57.486 30.769 0.00 0.00 43.39 2.50
368 381 8.138074 TGCAAAGTAACATAATGCAAAGTAACA 58.862 29.630 0.00 0.00 43.39 2.41
369 382 9.139174 GCAAAGTAACATAATGCAAAGTAACAT 57.861 29.630 0.00 0.00 37.00 2.71
382 395 9.784531 ATGCAAAGTAACATAATGCTAGTATCT 57.215 29.630 0.00 0.00 37.86 1.98
383 396 9.613428 TGCAAAGTAACATAATGCTAGTATCTT 57.387 29.630 0.00 0.00 37.86 2.40
411 424 7.553881 TGGCTTCATTTATTAGCTTGTAGAC 57.446 36.000 0.00 0.00 35.30 2.59
412 425 7.338710 TGGCTTCATTTATTAGCTTGTAGACT 58.661 34.615 0.00 0.00 35.30 3.24
413 426 7.495934 TGGCTTCATTTATTAGCTTGTAGACTC 59.504 37.037 0.00 0.00 35.30 3.36
414 427 7.495934 GGCTTCATTTATTAGCTTGTAGACTCA 59.504 37.037 0.00 0.00 35.30 3.41
415 428 9.050601 GCTTCATTTATTAGCTTGTAGACTCAT 57.949 33.333 0.00 0.00 32.26 2.90
421 434 9.587772 TTTATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
422 435 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
423 436 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
424 437 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
425 438 4.629200 GCTTGTAGACTCATCTTGTCTTGG 59.371 45.833 1.67 0.00 41.45 3.61
426 439 5.567623 GCTTGTAGACTCATCTTGTCTTGGA 60.568 44.000 1.67 0.00 41.45 3.53
427 440 6.419484 TTGTAGACTCATCTTGTCTTGGAA 57.581 37.500 1.67 0.00 41.45 3.53
428 441 6.419484 TGTAGACTCATCTTGTCTTGGAAA 57.581 37.500 1.67 0.00 41.45 3.13
429 442 6.826668 TGTAGACTCATCTTGTCTTGGAAAA 58.173 36.000 1.67 0.00 41.45 2.29
430 443 6.706270 TGTAGACTCATCTTGTCTTGGAAAAC 59.294 38.462 1.67 0.00 41.45 2.43
431 444 4.752101 AGACTCATCTTGTCTTGGAAAACG 59.248 41.667 0.00 0.00 41.45 3.60
432 445 3.251004 ACTCATCTTGTCTTGGAAAACGC 59.749 43.478 0.00 0.00 0.00 4.84
433 446 3.476552 TCATCTTGTCTTGGAAAACGCT 58.523 40.909 0.00 0.00 0.00 5.07
434 447 4.637276 TCATCTTGTCTTGGAAAACGCTA 58.363 39.130 0.00 0.00 0.00 4.26
435 448 5.245531 TCATCTTGTCTTGGAAAACGCTAT 58.754 37.500 0.00 0.00 0.00 2.97
436 449 5.122239 TCATCTTGTCTTGGAAAACGCTATG 59.878 40.000 0.00 0.00 0.00 2.23
437 450 4.385825 TCTTGTCTTGGAAAACGCTATGT 58.614 39.130 0.00 0.00 0.00 2.29
438 451 4.819630 TCTTGTCTTGGAAAACGCTATGTT 59.180 37.500 0.00 0.00 44.59 2.71
439 452 5.992829 TCTTGTCTTGGAAAACGCTATGTTA 59.007 36.000 0.00 0.00 40.84 2.41
440 453 5.600908 TGTCTTGGAAAACGCTATGTTAC 57.399 39.130 0.00 0.00 40.84 2.50
441 454 4.453136 TGTCTTGGAAAACGCTATGTTACC 59.547 41.667 0.00 0.00 40.84 2.85
442 455 4.453136 GTCTTGGAAAACGCTATGTTACCA 59.547 41.667 0.00 0.00 40.84 3.25
443 456 4.453136 TCTTGGAAAACGCTATGTTACCAC 59.547 41.667 0.00 0.00 42.61 4.16
444 457 3.075884 TGGAAAACGCTATGTTACCACC 58.924 45.455 0.00 0.00 40.84 4.61
445 458 3.244630 TGGAAAACGCTATGTTACCACCT 60.245 43.478 0.00 0.00 40.84 4.00
446 459 3.373130 GGAAAACGCTATGTTACCACCTC 59.627 47.826 0.00 0.00 40.84 3.85
447 460 3.975168 AAACGCTATGTTACCACCTCT 57.025 42.857 0.00 0.00 40.84 3.69
448 461 3.521947 AACGCTATGTTACCACCTCTC 57.478 47.619 0.00 0.00 39.61 3.20
449 462 2.453521 ACGCTATGTTACCACCTCTCA 58.546 47.619 0.00 0.00 0.00 3.27
450 463 3.031736 ACGCTATGTTACCACCTCTCAT 58.968 45.455 0.00 0.00 0.00 2.90
451 464 3.451178 ACGCTATGTTACCACCTCTCATT 59.549 43.478 0.00 0.00 0.00 2.57
452 465 4.647853 ACGCTATGTTACCACCTCTCATTA 59.352 41.667 0.00 0.00 0.00 1.90
453 466 5.128171 ACGCTATGTTACCACCTCTCATTAA 59.872 40.000 0.00 0.00 0.00 1.40
454 467 6.183360 ACGCTATGTTACCACCTCTCATTAAT 60.183 38.462 0.00 0.00 0.00 1.40
455 468 6.706270 CGCTATGTTACCACCTCTCATTAATT 59.294 38.462 0.00 0.00 0.00 1.40
456 469 7.870954 CGCTATGTTACCACCTCTCATTAATTA 59.129 37.037 0.00 0.00 0.00 1.40
457 470 9.726438 GCTATGTTACCACCTCTCATTAATTAT 57.274 33.333 0.00 0.00 0.00 1.28
461 474 8.682710 TGTTACCACCTCTCATTAATTATTTGC 58.317 33.333 0.00 0.00 0.00 3.68
462 475 6.715347 ACCACCTCTCATTAATTATTTGCC 57.285 37.500 0.00 0.00 0.00 4.52
463 476 6.194235 ACCACCTCTCATTAATTATTTGCCA 58.806 36.000 0.00 0.00 0.00 4.92
464 477 6.096846 ACCACCTCTCATTAATTATTTGCCAC 59.903 38.462 0.00 0.00 0.00 5.01
465 478 6.096705 CCACCTCTCATTAATTATTTGCCACA 59.903 38.462 0.00 0.00 0.00 4.17
466 479 7.201938 CCACCTCTCATTAATTATTTGCCACAT 60.202 37.037 0.00 0.00 0.00 3.21
467 480 8.849168 CACCTCTCATTAATTATTTGCCACATA 58.151 33.333 0.00 0.00 0.00 2.29
468 481 9.420118 ACCTCTCATTAATTATTTGCCACATAA 57.580 29.630 0.00 0.00 0.00 1.90
469 482 9.903682 CCTCTCATTAATTATTTGCCACATAAG 57.096 33.333 0.00 0.00 0.00 1.73
470 483 9.403110 CTCTCATTAATTATTTGCCACATAAGC 57.597 33.333 0.00 0.00 0.00 3.09
471 484 8.911965 TCTCATTAATTATTTGCCACATAAGCA 58.088 29.630 0.00 0.00 38.81 3.91
480 493 5.726980 TTGCCACATAAGCAAAGATTTCT 57.273 34.783 0.00 0.00 46.71 2.52
481 494 5.726980 TGCCACATAAGCAAAGATTTCTT 57.273 34.783 0.00 0.00 37.28 2.52
482 495 6.100404 TGCCACATAAGCAAAGATTTCTTT 57.900 33.333 0.00 0.00 46.23 2.52
495 508 7.516198 AAAGATTTCTTTGAGTGTGCTATGT 57.484 32.000 4.80 0.00 43.87 2.29
496 509 7.516198 AAGATTTCTTTGAGTGTGCTATGTT 57.484 32.000 0.00 0.00 30.82 2.71
497 510 8.621532 AAGATTTCTTTGAGTGTGCTATGTTA 57.378 30.769 0.00 0.00 30.82 2.41
498 511 8.034058 AGATTTCTTTGAGTGTGCTATGTTAC 57.966 34.615 0.00 0.00 0.00 2.50
499 512 7.880195 AGATTTCTTTGAGTGTGCTATGTTACT 59.120 33.333 0.00 0.00 0.00 2.24
500 513 7.421530 TTTCTTTGAGTGTGCTATGTTACTC 57.578 36.000 0.00 0.00 39.88 2.59
501 514 5.479306 TCTTTGAGTGTGCTATGTTACTCC 58.521 41.667 0.00 0.00 38.96 3.85
502 515 3.887621 TGAGTGTGCTATGTTACTCCC 57.112 47.619 0.00 0.00 38.96 4.30
503 516 3.441101 TGAGTGTGCTATGTTACTCCCT 58.559 45.455 0.00 0.00 38.96 4.20
504 517 3.447586 TGAGTGTGCTATGTTACTCCCTC 59.552 47.826 0.00 0.00 38.96 4.30
505 518 2.766828 AGTGTGCTATGTTACTCCCTCC 59.233 50.000 0.00 0.00 0.00 4.30
506 519 1.754803 TGTGCTATGTTACTCCCTCCG 59.245 52.381 0.00 0.00 0.00 4.63
507 520 1.068741 GTGCTATGTTACTCCCTCCGG 59.931 57.143 0.00 0.00 0.00 5.14
508 521 1.342674 TGCTATGTTACTCCCTCCGGT 60.343 52.381 0.00 0.00 0.00 5.28
509 522 1.340568 GCTATGTTACTCCCTCCGGTC 59.659 57.143 0.00 0.00 0.00 4.79
510 523 1.962100 CTATGTTACTCCCTCCGGTCC 59.038 57.143 0.00 0.00 0.00 4.46
511 524 0.338814 ATGTTACTCCCTCCGGTCCT 59.661 55.000 0.00 0.00 0.00 3.85
512 525 0.115745 TGTTACTCCCTCCGGTCCTT 59.884 55.000 0.00 0.00 0.00 3.36
513 526 1.273759 GTTACTCCCTCCGGTCCTTT 58.726 55.000 0.00 0.00 0.00 3.11
514 527 1.627329 GTTACTCCCTCCGGTCCTTTT 59.373 52.381 0.00 0.00 0.00 2.27
515 528 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
516 529 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
517 530 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
518 531 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
519 532 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
520 533 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
521 534 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
522 535 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
523 536 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
524 537 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
525 538 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
526 539 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
527 540 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
528 541 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
529 542 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
530 543 6.292703 CGGTCCTTTTTAGTTCGCATATAAGG 60.293 42.308 0.00 0.00 33.79 2.69
531 544 6.541278 GGTCCTTTTTAGTTCGCATATAAGGT 59.459 38.462 0.00 0.00 34.10 3.50
532 545 7.066645 GGTCCTTTTTAGTTCGCATATAAGGTT 59.933 37.037 0.00 0.00 34.10 3.50
533 546 8.456471 GTCCTTTTTAGTTCGCATATAAGGTTT 58.544 33.333 0.00 0.00 34.10 3.27
534 547 8.455682 TCCTTTTTAGTTCGCATATAAGGTTTG 58.544 33.333 0.00 0.00 34.10 2.93
535 548 8.241367 CCTTTTTAGTTCGCATATAAGGTTTGT 58.759 33.333 0.00 0.00 0.00 2.83
536 549 9.274065 CTTTTTAGTTCGCATATAAGGTTTGTC 57.726 33.333 0.00 0.00 0.00 3.18
537 550 8.556213 TTTTAGTTCGCATATAAGGTTTGTCT 57.444 30.769 0.00 0.00 0.00 3.41
538 551 7.534085 TTAGTTCGCATATAAGGTTTGTCTG 57.466 36.000 0.00 0.00 0.00 3.51
539 552 5.730550 AGTTCGCATATAAGGTTTGTCTGA 58.269 37.500 0.00 0.00 0.00 3.27
540 553 6.170506 AGTTCGCATATAAGGTTTGTCTGAA 58.829 36.000 0.00 0.00 0.00 3.02
541 554 6.313905 AGTTCGCATATAAGGTTTGTCTGAAG 59.686 38.462 0.00 0.00 0.00 3.02
542 555 5.730550 TCGCATATAAGGTTTGTCTGAAGT 58.269 37.500 0.00 0.00 0.00 3.01
543 556 5.810587 TCGCATATAAGGTTTGTCTGAAGTC 59.189 40.000 0.00 0.00 0.00 3.01
544 557 5.580691 CGCATATAAGGTTTGTCTGAAGTCA 59.419 40.000 0.00 0.00 0.00 3.41
545 558 6.092122 CGCATATAAGGTTTGTCTGAAGTCAA 59.908 38.462 0.00 0.00 0.00 3.18
546 559 7.360861 CGCATATAAGGTTTGTCTGAAGTCAAA 60.361 37.037 0.00 0.00 32.37 2.69
547 560 7.750903 GCATATAAGGTTTGTCTGAAGTCAAAC 59.249 37.037 18.75 18.75 46.05 2.93
551 564 4.197107 GTTTGTCTGAAGTCAAACCTCG 57.803 45.455 17.13 0.00 43.31 4.63
552 565 3.536956 TTGTCTGAAGTCAAACCTCGT 57.463 42.857 0.00 0.00 0.00 4.18
553 566 4.659111 TTGTCTGAAGTCAAACCTCGTA 57.341 40.909 0.00 0.00 0.00 3.43
554 567 4.659111 TGTCTGAAGTCAAACCTCGTAA 57.341 40.909 0.00 0.00 0.00 3.18
555 568 5.013568 TGTCTGAAGTCAAACCTCGTAAA 57.986 39.130 0.00 0.00 0.00 2.01
556 569 4.807304 TGTCTGAAGTCAAACCTCGTAAAC 59.193 41.667 0.00 0.00 0.00 2.01
557 570 5.048507 GTCTGAAGTCAAACCTCGTAAACT 58.951 41.667 0.00 0.00 0.00 2.66
558 571 5.522824 GTCTGAAGTCAAACCTCGTAAACTT 59.477 40.000 0.00 0.00 0.00 2.66
559 572 6.036844 GTCTGAAGTCAAACCTCGTAAACTTT 59.963 38.462 0.00 0.00 0.00 2.66
560 573 6.036735 TCTGAAGTCAAACCTCGTAAACTTTG 59.963 38.462 0.00 0.00 0.00 2.77
561 574 5.875910 TGAAGTCAAACCTCGTAAACTTTGA 59.124 36.000 0.00 0.00 31.68 2.69
562 575 5.729974 AGTCAAACCTCGTAAACTTTGAC 57.270 39.130 12.19 12.19 46.84 3.18
563 576 4.840911 GTCAAACCTCGTAAACTTTGACC 58.159 43.478 9.86 0.00 43.35 4.02
564 577 3.556775 TCAAACCTCGTAAACTTTGACCG 59.443 43.478 0.00 0.00 29.66 4.79
565 578 3.457610 AACCTCGTAAACTTTGACCGA 57.542 42.857 0.00 0.00 0.00 4.69
566 579 3.457610 ACCTCGTAAACTTTGACCGAA 57.542 42.857 0.00 0.00 0.00 4.30
567 580 3.999046 ACCTCGTAAACTTTGACCGAAT 58.001 40.909 0.00 0.00 0.00 3.34
568 581 4.383173 ACCTCGTAAACTTTGACCGAATT 58.617 39.130 0.00 0.00 0.00 2.17
569 582 4.818005 ACCTCGTAAACTTTGACCGAATTT 59.182 37.500 0.00 0.00 0.00 1.82
570 583 5.990996 ACCTCGTAAACTTTGACCGAATTTA 59.009 36.000 0.00 0.00 0.00 1.40
571 584 6.652062 ACCTCGTAAACTTTGACCGAATTTAT 59.348 34.615 0.00 0.00 0.00 1.40
572 585 6.959311 CCTCGTAAACTTTGACCGAATTTATG 59.041 38.462 0.00 0.00 0.00 1.90
573 586 7.148540 CCTCGTAAACTTTGACCGAATTTATGA 60.149 37.037 0.00 0.00 32.55 2.15
574 587 8.085720 TCGTAAACTTTGACCGAATTTATGAA 57.914 30.769 0.00 0.00 31.22 2.57
575 588 8.225107 TCGTAAACTTTGACCGAATTTATGAAG 58.775 33.333 0.00 0.00 31.22 3.02
576 589 8.225107 CGTAAACTTTGACCGAATTTATGAAGA 58.775 33.333 0.00 0.00 0.00 2.87
577 590 9.887406 GTAAACTTTGACCGAATTTATGAAGAA 57.113 29.630 0.00 0.00 0.00 2.52
579 592 9.810545 AAACTTTGACCGAATTTATGAAGAAAA 57.189 25.926 0.00 0.00 0.00 2.29
580 593 9.810545 AACTTTGACCGAATTTATGAAGAAAAA 57.189 25.926 0.00 0.00 0.00 1.94
581 594 9.981114 ACTTTGACCGAATTTATGAAGAAAAAT 57.019 25.926 0.00 0.00 0.00 1.82
584 597 9.849166 TTGACCGAATTTATGAAGAAAAATACC 57.151 29.630 0.00 0.00 0.00 2.73
585 598 9.015367 TGACCGAATTTATGAAGAAAAATACCA 57.985 29.630 0.00 0.00 0.00 3.25
586 599 9.849166 GACCGAATTTATGAAGAAAAATACCAA 57.151 29.630 0.00 0.00 0.00 3.67
587 600 9.634163 ACCGAATTTATGAAGAAAAATACCAAC 57.366 29.630 0.00 0.00 0.00 3.77
588 601 9.632807 CCGAATTTATGAAGAAAAATACCAACA 57.367 29.630 0.00 0.00 0.00 3.33
597 610 9.695526 TGAAGAAAAATACCAACATTCAGAATG 57.304 29.630 19.93 19.93 44.48 2.67
614 627 8.945481 TTCAGAATGTGAAAATCAACAACATT 57.055 26.923 0.00 0.00 42.49 2.71
616 629 9.681692 TCAGAATGTGAAAATCAACAACATTAG 57.318 29.630 0.00 0.00 37.40 1.73
617 630 9.681692 CAGAATGTGAAAATCAACAACATTAGA 57.318 29.630 0.00 0.00 0.00 2.10
620 633 7.872163 TGTGAAAATCAACAACATTAGATGC 57.128 32.000 0.00 0.00 0.00 3.91
621 634 6.581919 TGTGAAAATCAACAACATTAGATGCG 59.418 34.615 0.00 0.00 0.00 4.73
622 635 6.582295 GTGAAAATCAACAACATTAGATGCGT 59.418 34.615 0.00 0.00 0.00 5.24
623 636 6.801377 TGAAAATCAACAACATTAGATGCGTC 59.199 34.615 0.00 0.00 0.00 5.19
624 637 5.878332 AATCAACAACATTAGATGCGTCA 57.122 34.783 8.99 0.00 0.00 4.35
625 638 6.441093 AATCAACAACATTAGATGCGTCAT 57.559 33.333 8.99 0.00 0.00 3.06
626 639 5.220557 TCAACAACATTAGATGCGTCATG 57.779 39.130 8.99 6.69 0.00 3.07
627 640 4.934602 TCAACAACATTAGATGCGTCATGA 59.065 37.500 8.99 0.00 0.00 3.07
628 641 5.585844 TCAACAACATTAGATGCGTCATGAT 59.414 36.000 8.99 0.00 0.00 2.45
629 642 6.093909 TCAACAACATTAGATGCGTCATGATT 59.906 34.615 8.99 0.00 0.00 2.57
630 643 6.441093 ACAACATTAGATGCGTCATGATTT 57.559 33.333 8.99 0.00 0.00 2.17
631 644 6.855836 ACAACATTAGATGCGTCATGATTTT 58.144 32.000 8.99 0.00 0.00 1.82
632 645 7.984391 ACAACATTAGATGCGTCATGATTTTA 58.016 30.769 8.99 0.00 0.00 1.52
633 646 8.124823 ACAACATTAGATGCGTCATGATTTTAG 58.875 33.333 8.99 0.00 0.00 1.85
634 647 7.792374 ACATTAGATGCGTCATGATTTTAGT 57.208 32.000 8.99 0.00 0.00 2.24
635 648 8.213518 ACATTAGATGCGTCATGATTTTAGTT 57.786 30.769 8.99 0.00 0.00 2.24
636 649 8.677300 ACATTAGATGCGTCATGATTTTAGTTT 58.323 29.630 8.99 0.00 0.00 2.66
637 650 9.507280 CATTAGATGCGTCATGATTTTAGTTTT 57.493 29.630 8.99 0.00 0.00 2.43
638 651 9.722056 ATTAGATGCGTCATGATTTTAGTTTTC 57.278 29.630 8.99 0.00 0.00 2.29
639 652 7.144722 AGATGCGTCATGATTTTAGTTTTCA 57.855 32.000 8.99 0.00 0.00 2.69
640 653 7.765307 AGATGCGTCATGATTTTAGTTTTCAT 58.235 30.769 8.99 0.00 0.00 2.57
641 654 8.892723 AGATGCGTCATGATTTTAGTTTTCATA 58.107 29.630 8.99 0.00 0.00 2.15
642 655 9.669353 GATGCGTCATGATTTTAGTTTTCATAT 57.331 29.630 0.00 0.00 0.00 1.78
644 657 9.288124 TGCGTCATGATTTTAGTTTTCATATTG 57.712 29.630 0.00 0.00 0.00 1.90
645 658 9.289303 GCGTCATGATTTTAGTTTTCATATTGT 57.711 29.630 0.00 0.00 0.00 2.71
713 726 7.750229 TGATCAAACTTTATGAAGCTTGACT 57.250 32.000 15.77 7.68 45.54 3.41
729 742 7.375106 AGCTTGACTTCAGACAATTCTTATG 57.625 36.000 0.00 0.00 0.00 1.90
730 743 6.026513 GCTTGACTTCAGACAATTCTTATGC 58.973 40.000 0.00 0.00 0.00 3.14
731 744 5.784750 TGACTTCAGACAATTCTTATGCG 57.215 39.130 0.00 0.00 0.00 4.73
735 748 5.700832 ACTTCAGACAATTCTTATGCGTGAA 59.299 36.000 0.00 0.00 0.00 3.18
736 749 5.784750 TCAGACAATTCTTATGCGTGAAG 57.215 39.130 0.00 0.00 0.00 3.02
737 750 5.237815 TCAGACAATTCTTATGCGTGAAGT 58.762 37.500 0.00 0.00 0.00 3.01
738 751 6.394809 TCAGACAATTCTTATGCGTGAAGTA 58.605 36.000 0.00 0.00 0.00 2.24
739 752 6.310467 TCAGACAATTCTTATGCGTGAAGTAC 59.690 38.462 0.00 0.00 0.00 2.73
740 753 6.311445 CAGACAATTCTTATGCGTGAAGTACT 59.689 38.462 0.00 0.00 0.00 2.73
741 754 7.488150 CAGACAATTCTTATGCGTGAAGTACTA 59.512 37.037 0.00 0.00 0.00 1.82
742 755 7.702772 AGACAATTCTTATGCGTGAAGTACTAG 59.297 37.037 0.00 0.00 0.00 2.57
743 756 6.255887 ACAATTCTTATGCGTGAAGTACTAGC 59.744 38.462 0.00 0.55 0.00 3.42
745 758 6.688637 TTCTTATGCGTGAAGTACTAGCTA 57.311 37.500 0.00 0.00 0.00 3.32
746 759 6.688637 TCTTATGCGTGAAGTACTAGCTAA 57.311 37.500 0.00 1.48 0.00 3.09
747 760 6.726230 TCTTATGCGTGAAGTACTAGCTAAG 58.274 40.000 0.00 9.50 0.00 2.18
748 761 4.985538 ATGCGTGAAGTACTAGCTAAGT 57.014 40.909 0.00 0.00 42.62 2.24
751 764 5.634896 TGCGTGAAGTACTAGCTAAGTTAC 58.365 41.667 0.00 0.00 39.80 2.50
752 765 5.413833 TGCGTGAAGTACTAGCTAAGTTACT 59.586 40.000 0.00 0.00 39.80 2.24
753 766 5.964751 GCGTGAAGTACTAGCTAAGTTACTC 59.035 44.000 0.00 5.33 39.80 2.59
754 767 6.183360 GCGTGAAGTACTAGCTAAGTTACTCT 60.183 42.308 0.00 2.59 39.80 3.24
755 768 7.401080 CGTGAAGTACTAGCTAAGTTACTCTC 58.599 42.308 0.00 9.17 39.80 3.20
757 770 8.177013 GTGAAGTACTAGCTAAGTTACTCTCAC 58.823 40.741 19.69 19.69 39.80 3.51
767 780 9.059260 AGCTAAGTTACTCTCACTATAACTAGC 57.941 37.037 0.00 0.00 38.01 3.42
768 781 8.291740 GCTAAGTTACTCTCACTATAACTAGCC 58.708 40.741 0.00 0.00 38.01 3.93
778 791 8.470805 TCTCACTATAACTAGCCTGAAAGAAAG 58.529 37.037 0.00 0.00 34.07 2.62
780 793 8.812972 TCACTATAACTAGCCTGAAAGAAAGAA 58.187 33.333 0.00 0.00 34.07 2.52
792 805 6.015027 TGAAAGAAAGAAACGAACAAACCA 57.985 33.333 0.00 0.00 0.00 3.67
798 811 5.424121 AAGAAACGAACAAACCATCTCAG 57.576 39.130 0.00 0.00 0.00 3.35
803 816 3.005554 CGAACAAACCATCTCAGCATCT 58.994 45.455 0.00 0.00 0.00 2.90
814 828 0.179100 TCAGCATCTTAGCTCACGGC 60.179 55.000 0.00 0.00 44.54 5.68
817 831 1.086696 GCATCTTAGCTCACGGCAAA 58.913 50.000 0.00 0.00 44.79 3.68
854 869 7.432148 TCAAGATTCCTAGCCACAATTAGTA 57.568 36.000 0.00 0.00 0.00 1.82
866 886 3.921677 ACAATTAGTAGTGTGACCGTGG 58.078 45.455 0.00 0.00 30.16 4.94
932 960 3.371487 CCATCTATAAACACAGCCCACCA 60.371 47.826 0.00 0.00 0.00 4.17
952 980 1.079543 CTGCACCGCTGAGCTTACT 60.080 57.895 1.78 0.00 0.00 2.24
956 984 0.179108 CACCGCTGAGCTTACTACCC 60.179 60.000 1.78 0.00 0.00 3.69
957 985 0.613853 ACCGCTGAGCTTACTACCCA 60.614 55.000 1.78 0.00 0.00 4.51
958 986 0.179108 CCGCTGAGCTTACTACCCAC 60.179 60.000 1.78 0.00 0.00 4.61
960 988 0.902531 GCTGAGCTTACTACCCACCA 59.097 55.000 0.00 0.00 0.00 4.17
962 990 2.483889 GCTGAGCTTACTACCCACCATC 60.484 54.545 0.00 0.00 0.00 3.51
963 991 1.754803 TGAGCTTACTACCCACCATCG 59.245 52.381 0.00 0.00 0.00 3.84
967 995 2.550978 CTTACTACCCACCATCGCAAG 58.449 52.381 0.00 0.00 0.00 4.01
968 996 0.828022 TACTACCCACCATCGCAAGG 59.172 55.000 0.00 0.00 38.47 3.61
1007 1051 1.443194 GCACACAGCAAATGGAGCG 60.443 57.895 0.00 0.00 44.79 5.03
1027 1077 3.793144 GCCAAGAAGCGCTGTCCG 61.793 66.667 12.58 0.00 40.75 4.79
1045 1095 2.642700 CAAAGAAACCGGCCGTGG 59.357 61.111 26.12 12.62 0.00 4.94
1176 1395 3.267860 CTGCTCGCCTTCATCCGC 61.268 66.667 0.00 0.00 0.00 5.54
1204 1423 4.966787 TGCCGCACCCTTGGTTCC 62.967 66.667 0.00 0.00 31.02 3.62
1929 2166 3.460672 ATGGGCTACATGTCGGGCG 62.461 63.158 0.00 0.00 38.70 6.13
2143 2401 0.162933 ACATTGCGCAAGTACGAACG 59.837 50.000 28.62 10.77 41.68 3.95
2245 2503 2.353607 GATCCAGACGCTACGCCG 60.354 66.667 0.00 0.00 0.00 6.46
2315 2577 1.005275 AGATGATCGGAGCGCATGG 60.005 57.895 11.47 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.117241 ACATTGTCAGTTACATTTCTACGTG 57.883 36.000 0.00 0.00 38.10 4.49
1 2 7.724305 AACATTGTCAGTTACATTTCTACGT 57.276 32.000 0.00 0.00 38.10 3.57
3 4 9.525007 CGTAAACATTGTCAGTTACATTTCTAC 57.475 33.333 9.41 0.00 38.10 2.59
4 5 8.714179 CCGTAAACATTGTCAGTTACATTTCTA 58.286 33.333 9.41 0.00 38.10 2.10
5 6 7.227910 ACCGTAAACATTGTCAGTTACATTTCT 59.772 33.333 9.41 0.00 38.10 2.52
6 7 7.322699 CACCGTAAACATTGTCAGTTACATTTC 59.677 37.037 9.41 0.00 38.10 2.17
7 8 7.136119 CACCGTAAACATTGTCAGTTACATTT 58.864 34.615 9.41 0.00 38.10 2.32
8 9 6.261381 ACACCGTAAACATTGTCAGTTACATT 59.739 34.615 9.41 0.00 38.10 2.71
9 10 5.761234 ACACCGTAAACATTGTCAGTTACAT 59.239 36.000 9.41 0.00 38.10 2.29
10 11 5.117584 ACACCGTAAACATTGTCAGTTACA 58.882 37.500 9.41 0.00 35.88 2.41
11 12 5.662211 ACACCGTAAACATTGTCAGTTAC 57.338 39.130 0.00 0.00 0.00 2.50
12 13 6.093771 ACAAACACCGTAAACATTGTCAGTTA 59.906 34.615 0.00 0.00 0.00 2.24
13 14 5.106078 ACAAACACCGTAAACATTGTCAGTT 60.106 36.000 0.00 0.00 0.00 3.16
14 15 4.396790 ACAAACACCGTAAACATTGTCAGT 59.603 37.500 0.00 0.00 0.00 3.41
15 16 4.915704 ACAAACACCGTAAACATTGTCAG 58.084 39.130 0.00 0.00 0.00 3.51
16 17 4.966965 ACAAACACCGTAAACATTGTCA 57.033 36.364 0.00 0.00 0.00 3.58
17 18 6.579666 GGAATACAAACACCGTAAACATTGTC 59.420 38.462 0.00 0.00 33.48 3.18
18 19 6.440436 GGAATACAAACACCGTAAACATTGT 58.560 36.000 0.00 0.00 35.41 2.71
19 20 5.566016 CGGAATACAAACACCGTAAACATTG 59.434 40.000 0.00 0.00 40.42 2.82
20 21 5.469421 TCGGAATACAAACACCGTAAACATT 59.531 36.000 0.00 0.00 44.72 2.71
21 22 4.996122 TCGGAATACAAACACCGTAAACAT 59.004 37.500 0.00 0.00 44.72 2.71
22 23 4.210955 GTCGGAATACAAACACCGTAAACA 59.789 41.667 0.00 0.00 44.72 2.83
23 24 4.448732 AGTCGGAATACAAACACCGTAAAC 59.551 41.667 0.00 0.00 44.72 2.01
24 25 4.630111 AGTCGGAATACAAACACCGTAAA 58.370 39.130 0.00 0.00 44.72 2.01
25 26 4.255833 AGTCGGAATACAAACACCGTAA 57.744 40.909 0.00 0.00 44.72 3.18
26 27 3.940209 AGTCGGAATACAAACACCGTA 57.060 42.857 0.00 0.00 44.72 4.02
27 28 2.825861 AGTCGGAATACAAACACCGT 57.174 45.000 0.00 0.00 44.72 4.83
28 29 4.426416 TCATAGTCGGAATACAAACACCG 58.574 43.478 0.00 0.00 45.61 4.94
29 30 5.416947 ACTCATAGTCGGAATACAAACACC 58.583 41.667 0.00 0.00 0.00 4.16
30 31 6.570690 GACTCATAGTCGGAATACAAACAC 57.429 41.667 0.00 0.00 35.28 3.32
40 41 9.546203 GATGCTCTTCATTGACTCATAGTCGGA 62.546 44.444 2.85 0.00 40.83 4.55
41 42 7.495696 GATGCTCTTCATTGACTCATAGTCGG 61.496 46.154 2.85 0.00 40.83 4.79
42 43 5.401972 GATGCTCTTCATTGACTCATAGTCG 59.598 44.000 2.85 0.00 40.83 4.18
43 44 6.200665 GTGATGCTCTTCATTGACTCATAGTC 59.799 42.308 0.01 0.01 39.50 2.59
44 45 6.047870 GTGATGCTCTTCATTGACTCATAGT 58.952 40.000 0.00 0.00 35.05 2.12
45 46 5.175308 CGTGATGCTCTTCATTGACTCATAG 59.825 44.000 0.00 0.00 35.05 2.23
46 47 5.045872 CGTGATGCTCTTCATTGACTCATA 58.954 41.667 0.00 0.00 35.05 2.15
47 48 3.869832 CGTGATGCTCTTCATTGACTCAT 59.130 43.478 0.00 0.00 35.05 2.90
48 49 3.256558 CGTGATGCTCTTCATTGACTCA 58.743 45.455 0.00 0.00 35.05 3.41
64 65 8.731275 TGGATGTATTCTTTTTGATACGTGAT 57.269 30.769 0.00 0.00 0.00 3.06
68 69 7.445402 AGGGATGGATGTATTCTTTTTGATACG 59.555 37.037 0.00 0.00 0.00 3.06
69 70 8.571336 CAGGGATGGATGTATTCTTTTTGATAC 58.429 37.037 0.00 0.00 0.00 2.24
78 79 3.392616 GGTCACAGGGATGGATGTATTCT 59.607 47.826 0.00 0.00 0.00 2.40
79 80 3.496870 GGGTCACAGGGATGGATGTATTC 60.497 52.174 0.00 0.00 0.00 1.75
81 82 2.057922 GGGTCACAGGGATGGATGTAT 58.942 52.381 0.00 0.00 0.00 2.29
84 85 1.281199 TGGGGTCACAGGGATGGATG 61.281 60.000 0.00 0.00 0.00 3.51
85 86 0.990282 CTGGGGTCACAGGGATGGAT 60.990 60.000 0.00 0.00 34.84 3.41
86 87 1.616327 CTGGGGTCACAGGGATGGA 60.616 63.158 0.00 0.00 34.84 3.41
87 88 3.001514 CTGGGGTCACAGGGATGG 58.998 66.667 0.00 0.00 34.84 3.51
127 128 5.766222 ACAATCAAACAAATCAGCAGAGAC 58.234 37.500 0.00 0.00 0.00 3.36
131 132 7.697352 TGTTAACAATCAAACAAATCAGCAG 57.303 32.000 5.64 0.00 32.86 4.24
197 210 4.004314 GGAAAGAAGGAGTAAGAAGGTGC 58.996 47.826 0.00 0.00 0.00 5.01
198 211 4.565861 GGGGAAAGAAGGAGTAAGAAGGTG 60.566 50.000 0.00 0.00 0.00 4.00
199 212 3.587951 GGGGAAAGAAGGAGTAAGAAGGT 59.412 47.826 0.00 0.00 0.00 3.50
201 214 4.910458 TGGGGAAAGAAGGAGTAAGAAG 57.090 45.455 0.00 0.00 0.00 2.85
203 216 3.780850 GGATGGGGAAAGAAGGAGTAAGA 59.219 47.826 0.00 0.00 0.00 2.10
204 217 3.523564 TGGATGGGGAAAGAAGGAGTAAG 59.476 47.826 0.00 0.00 0.00 2.34
206 219 3.214694 TGGATGGGGAAAGAAGGAGTA 57.785 47.619 0.00 0.00 0.00 2.59
208 221 2.158549 GGATGGATGGGGAAAGAAGGAG 60.159 54.545 0.00 0.00 0.00 3.69
246 259 2.439507 AGAGACAAGAAAAGGACAGGCA 59.560 45.455 0.00 0.00 0.00 4.75
247 260 3.133141 AGAGACAAGAAAAGGACAGGC 57.867 47.619 0.00 0.00 0.00 4.85
248 261 6.091441 CGAATTAGAGACAAGAAAAGGACAGG 59.909 42.308 0.00 0.00 0.00 4.00
272 285 7.884816 TGACTAACCTTAGAAATTTCAGACG 57.115 36.000 19.99 7.27 34.84 4.18
284 297 6.749036 ATTCCCCACTATGACTAACCTTAG 57.251 41.667 0.00 0.00 36.82 2.18
287 300 6.210522 AGTTATTCCCCACTATGACTAACCT 58.789 40.000 0.00 0.00 30.95 3.50
288 301 6.496144 AGTTATTCCCCACTATGACTAACC 57.504 41.667 0.00 0.00 30.95 2.85
289 302 8.921205 TCTAAGTTATTCCCCACTATGACTAAC 58.079 37.037 0.00 0.00 30.84 2.34
292 305 7.133483 AGTCTAAGTTATTCCCCACTATGACT 58.867 38.462 0.00 0.00 34.02 3.41
293 306 7.362802 AGTCTAAGTTATTCCCCACTATGAC 57.637 40.000 0.00 0.00 0.00 3.06
294 307 8.287350 ACTAGTCTAAGTTATTCCCCACTATGA 58.713 37.037 0.00 0.00 0.00 2.15
295 308 8.361139 CACTAGTCTAAGTTATTCCCCACTATG 58.639 40.741 0.00 0.00 0.00 2.23
296 309 8.066247 ACACTAGTCTAAGTTATTCCCCACTAT 58.934 37.037 0.00 0.00 0.00 2.12
297 310 7.416731 ACACTAGTCTAAGTTATTCCCCACTA 58.583 38.462 0.00 0.00 0.00 2.74
298 311 6.262207 ACACTAGTCTAAGTTATTCCCCACT 58.738 40.000 0.00 0.00 0.00 4.00
300 313 6.258354 TGACACTAGTCTAAGTTATTCCCCA 58.742 40.000 0.00 0.00 45.20 4.96
301 314 6.786967 TGACACTAGTCTAAGTTATTCCCC 57.213 41.667 0.00 0.00 45.20 4.81
302 315 7.783042 ACATGACACTAGTCTAAGTTATTCCC 58.217 38.462 0.00 0.00 45.20 3.97
333 346 9.734620 GCATTATGTTACTTTGCATTATGAAGA 57.265 29.630 2.16 0.00 35.42 2.87
334 347 9.518906 TGCATTATGTTACTTTGCATTATGAAG 57.481 29.630 0.00 0.00 38.32 3.02
335 348 9.866798 TTGCATTATGTTACTTTGCATTATGAA 57.133 25.926 0.00 0.00 42.34 2.57
336 349 9.866798 TTTGCATTATGTTACTTTGCATTATGA 57.133 25.926 0.00 0.00 42.34 2.15
338 351 9.874205 ACTTTGCATTATGTTACTTTGCATTAT 57.126 25.926 0.00 0.00 42.34 1.28
340 353 9.703892 TTACTTTGCATTATGTTACTTTGCATT 57.296 25.926 0.00 0.00 42.34 3.56
341 354 9.139174 GTTACTTTGCATTATGTTACTTTGCAT 57.861 29.630 0.00 0.00 42.34 3.96
342 355 8.138074 TGTTACTTTGCATTATGTTACTTTGCA 58.862 29.630 0.00 0.00 41.22 4.08
343 356 8.514136 TGTTACTTTGCATTATGTTACTTTGC 57.486 30.769 0.00 0.00 0.00 3.68
356 369 9.784531 AGATACTAGCATTATGTTACTTTGCAT 57.215 29.630 0.00 0.00 35.79 3.96
357 370 9.613428 AAGATACTAGCATTATGTTACTTTGCA 57.387 29.630 0.00 0.00 35.79 4.08
385 398 9.273016 GTCTACAAGCTAATAAATGAAGCCATA 57.727 33.333 0.00 0.00 36.92 2.74
386 399 7.995488 AGTCTACAAGCTAATAAATGAAGCCAT 59.005 33.333 0.00 0.00 36.92 4.40
387 400 7.338710 AGTCTACAAGCTAATAAATGAAGCCA 58.661 34.615 0.00 0.00 36.92 4.75
388 401 7.495934 TGAGTCTACAAGCTAATAAATGAAGCC 59.504 37.037 0.00 0.00 36.92 4.35
389 402 8.425577 TGAGTCTACAAGCTAATAAATGAAGC 57.574 34.615 0.00 0.00 36.48 3.86
395 408 9.587772 GACAAGATGAGTCTACAAGCTAATAAA 57.412 33.333 0.00 0.00 33.30 1.40
396 409 8.972127 AGACAAGATGAGTCTACAAGCTAATAA 58.028 33.333 0.00 0.00 44.10 1.40
397 410 8.526667 AGACAAGATGAGTCTACAAGCTAATA 57.473 34.615 0.00 0.00 44.10 0.98
398 411 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
399 412 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
400 413 6.350528 CCAAGACAAGATGAGTCTACAAGCTA 60.351 42.308 0.00 0.00 45.11 3.32
401 414 5.477510 CAAGACAAGATGAGTCTACAAGCT 58.522 41.667 0.00 0.00 45.11 3.74
402 415 4.629200 CCAAGACAAGATGAGTCTACAAGC 59.371 45.833 0.00 0.00 45.11 4.01
403 416 6.030548 TCCAAGACAAGATGAGTCTACAAG 57.969 41.667 0.00 0.00 45.11 3.16
404 417 6.419484 TTCCAAGACAAGATGAGTCTACAA 57.581 37.500 0.00 0.00 45.11 2.41
405 418 6.419484 TTTCCAAGACAAGATGAGTCTACA 57.581 37.500 0.00 0.00 45.11 2.74
406 419 6.128795 CGTTTTCCAAGACAAGATGAGTCTAC 60.129 42.308 0.00 0.00 45.11 2.59
407 420 5.926542 CGTTTTCCAAGACAAGATGAGTCTA 59.073 40.000 0.00 0.00 45.11 2.59
409 422 4.611581 GCGTTTTCCAAGACAAGATGAGTC 60.612 45.833 0.00 0.00 36.26 3.36
410 423 3.251004 GCGTTTTCCAAGACAAGATGAGT 59.749 43.478 0.00 0.00 0.00 3.41
411 424 3.499918 AGCGTTTTCCAAGACAAGATGAG 59.500 43.478 0.00 0.00 0.00 2.90
412 425 3.476552 AGCGTTTTCCAAGACAAGATGA 58.523 40.909 0.00 0.00 0.00 2.92
413 426 3.904136 AGCGTTTTCCAAGACAAGATG 57.096 42.857 0.00 0.00 0.00 2.90
414 427 5.003804 ACATAGCGTTTTCCAAGACAAGAT 58.996 37.500 0.00 0.00 0.00 2.40
415 428 4.385825 ACATAGCGTTTTCCAAGACAAGA 58.614 39.130 0.00 0.00 0.00 3.02
416 429 4.749245 ACATAGCGTTTTCCAAGACAAG 57.251 40.909 0.00 0.00 0.00 3.16
417 430 5.049267 GGTAACATAGCGTTTTCCAAGACAA 60.049 40.000 0.00 0.00 39.14 3.18
418 431 4.453136 GGTAACATAGCGTTTTCCAAGACA 59.547 41.667 0.00 0.00 39.14 3.41
419 432 4.453136 TGGTAACATAGCGTTTTCCAAGAC 59.547 41.667 0.00 0.00 46.17 3.01
420 433 4.643463 TGGTAACATAGCGTTTTCCAAGA 58.357 39.130 0.00 0.00 46.17 3.02
436 449 8.135529 GGCAAATAATTAATGAGAGGTGGTAAC 58.864 37.037 5.96 0.00 0.00 2.50
437 450 7.836685 TGGCAAATAATTAATGAGAGGTGGTAA 59.163 33.333 5.96 0.00 0.00 2.85
438 451 7.284489 GTGGCAAATAATTAATGAGAGGTGGTA 59.716 37.037 0.00 0.00 0.00 3.25
439 452 6.096846 GTGGCAAATAATTAATGAGAGGTGGT 59.903 38.462 0.00 0.00 0.00 4.16
440 453 6.096705 TGTGGCAAATAATTAATGAGAGGTGG 59.903 38.462 0.00 0.00 0.00 4.61
441 454 7.099266 TGTGGCAAATAATTAATGAGAGGTG 57.901 36.000 0.00 0.00 0.00 4.00
442 455 7.902920 ATGTGGCAAATAATTAATGAGAGGT 57.097 32.000 0.00 0.00 0.00 3.85
443 456 9.903682 CTTATGTGGCAAATAATTAATGAGAGG 57.096 33.333 10.46 0.00 0.00 3.69
444 457 9.403110 GCTTATGTGGCAAATAATTAATGAGAG 57.597 33.333 10.46 0.00 0.00 3.20
445 458 8.911965 TGCTTATGTGGCAAATAATTAATGAGA 58.088 29.630 10.46 0.00 36.71 3.27
446 459 9.531942 TTGCTTATGTGGCAAATAATTAATGAG 57.468 29.630 10.46 0.00 45.05 2.90
458 471 5.726980 AGAAATCTTTGCTTATGTGGCAA 57.273 34.783 0.00 0.00 46.12 4.52
459 472 5.726980 AAGAAATCTTTGCTTATGTGGCA 57.273 34.783 0.00 0.00 37.97 4.92
471 484 7.516198 ACATAGCACACTCAAAGAAATCTTT 57.484 32.000 2.59 2.59 46.23 2.52
472 485 7.516198 AACATAGCACACTCAAAGAAATCTT 57.484 32.000 0.00 0.00 37.91 2.40
473 486 7.880195 AGTAACATAGCACACTCAAAGAAATCT 59.120 33.333 0.00 0.00 0.00 2.40
474 487 8.034058 AGTAACATAGCACACTCAAAGAAATC 57.966 34.615 0.00 0.00 0.00 2.17
475 488 7.119846 GGAGTAACATAGCACACTCAAAGAAAT 59.880 37.037 0.00 0.00 39.33 2.17
476 489 6.426937 GGAGTAACATAGCACACTCAAAGAAA 59.573 38.462 0.00 0.00 39.33 2.52
477 490 5.932303 GGAGTAACATAGCACACTCAAAGAA 59.068 40.000 0.00 0.00 39.33 2.52
478 491 5.479306 GGAGTAACATAGCACACTCAAAGA 58.521 41.667 0.00 0.00 39.33 2.52
479 492 4.631813 GGGAGTAACATAGCACACTCAAAG 59.368 45.833 0.00 0.00 39.33 2.77
480 493 4.286032 AGGGAGTAACATAGCACACTCAAA 59.714 41.667 0.00 0.00 39.33 2.69
481 494 3.838317 AGGGAGTAACATAGCACACTCAA 59.162 43.478 0.00 0.00 39.33 3.02
482 495 3.441101 AGGGAGTAACATAGCACACTCA 58.559 45.455 0.00 0.00 39.33 3.41
483 496 3.181474 GGAGGGAGTAACATAGCACACTC 60.181 52.174 0.00 0.00 37.32 3.51
484 497 2.766828 GGAGGGAGTAACATAGCACACT 59.233 50.000 0.00 0.00 0.00 3.55
485 498 2.481449 CGGAGGGAGTAACATAGCACAC 60.481 54.545 0.00 0.00 0.00 3.82
486 499 1.754803 CGGAGGGAGTAACATAGCACA 59.245 52.381 0.00 0.00 0.00 4.57
487 500 2.510768 CGGAGGGAGTAACATAGCAC 57.489 55.000 0.00 0.00 0.00 4.40
502 515 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
503 516 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
504 517 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
505 518 6.292703 CCTTATATGCGAACTAAAAAGGACCG 60.293 42.308 0.00 0.00 35.34 4.79
506 519 6.541278 ACCTTATATGCGAACTAAAAAGGACC 59.459 38.462 4.87 0.00 36.56 4.46
507 520 7.549615 ACCTTATATGCGAACTAAAAAGGAC 57.450 36.000 4.87 0.00 36.56 3.85
508 521 8.455682 CAAACCTTATATGCGAACTAAAAAGGA 58.544 33.333 4.87 0.00 36.56 3.36
509 522 8.241367 ACAAACCTTATATGCGAACTAAAAAGG 58.759 33.333 0.00 0.00 38.54 3.11
510 523 9.274065 GACAAACCTTATATGCGAACTAAAAAG 57.726 33.333 0.00 0.00 0.00 2.27
511 524 9.005777 AGACAAACCTTATATGCGAACTAAAAA 57.994 29.630 0.00 0.00 0.00 1.94
512 525 8.447833 CAGACAAACCTTATATGCGAACTAAAA 58.552 33.333 0.00 0.00 0.00 1.52
513 526 7.820386 TCAGACAAACCTTATATGCGAACTAAA 59.180 33.333 0.00 0.00 0.00 1.85
514 527 7.324935 TCAGACAAACCTTATATGCGAACTAA 58.675 34.615 0.00 0.00 0.00 2.24
515 528 6.869695 TCAGACAAACCTTATATGCGAACTA 58.130 36.000 0.00 0.00 0.00 2.24
516 529 5.730550 TCAGACAAACCTTATATGCGAACT 58.269 37.500 0.00 0.00 0.00 3.01
517 530 6.092259 ACTTCAGACAAACCTTATATGCGAAC 59.908 38.462 0.00 0.00 0.00 3.95
518 531 6.170506 ACTTCAGACAAACCTTATATGCGAA 58.829 36.000 0.00 0.00 0.00 4.70
519 532 5.730550 ACTTCAGACAAACCTTATATGCGA 58.269 37.500 0.00 0.00 0.00 5.10
520 533 5.580691 TGACTTCAGACAAACCTTATATGCG 59.419 40.000 0.00 0.00 0.00 4.73
521 534 6.985188 TGACTTCAGACAAACCTTATATGC 57.015 37.500 0.00 0.00 0.00 3.14
531 544 3.869065 ACGAGGTTTGACTTCAGACAAA 58.131 40.909 2.66 1.04 37.36 2.83
532 545 3.536956 ACGAGGTTTGACTTCAGACAA 57.463 42.857 2.66 0.00 33.14 3.18
533 546 4.659111 TTACGAGGTTTGACTTCAGACA 57.341 40.909 2.66 0.00 33.14 3.41
534 547 5.048507 AGTTTACGAGGTTTGACTTCAGAC 58.951 41.667 0.00 0.00 0.00 3.51
535 548 5.272283 AGTTTACGAGGTTTGACTTCAGA 57.728 39.130 0.00 0.00 0.00 3.27
536 549 5.986004 AAGTTTACGAGGTTTGACTTCAG 57.014 39.130 0.00 0.00 0.00 3.02
537 550 5.875910 TCAAAGTTTACGAGGTTTGACTTCA 59.124 36.000 0.00 0.00 34.72 3.02
538 551 6.354039 TCAAAGTTTACGAGGTTTGACTTC 57.646 37.500 0.00 0.00 34.72 3.01
542 555 3.556775 CGGTCAAAGTTTACGAGGTTTGA 59.443 43.478 0.00 0.00 36.74 2.69
543 556 3.556775 TCGGTCAAAGTTTACGAGGTTTG 59.443 43.478 0.00 0.00 0.00 2.93
544 557 3.795877 TCGGTCAAAGTTTACGAGGTTT 58.204 40.909 0.00 0.00 0.00 3.27
545 558 3.457610 TCGGTCAAAGTTTACGAGGTT 57.542 42.857 0.00 0.00 0.00 3.50
546 559 3.457610 TTCGGTCAAAGTTTACGAGGT 57.542 42.857 8.55 0.00 34.85 3.85
547 560 5.352643 AAATTCGGTCAAAGTTTACGAGG 57.647 39.130 8.55 0.00 34.85 4.63
548 561 7.735500 TCATAAATTCGGTCAAAGTTTACGAG 58.264 34.615 8.55 0.01 34.85 4.18
549 562 7.655236 TCATAAATTCGGTCAAAGTTTACGA 57.345 32.000 0.00 5.46 0.00 3.43
550 563 8.225107 TCTTCATAAATTCGGTCAAAGTTTACG 58.775 33.333 0.00 0.00 0.00 3.18
551 564 9.887406 TTCTTCATAAATTCGGTCAAAGTTTAC 57.113 29.630 0.00 0.00 0.00 2.01
553 566 9.810545 TTTTCTTCATAAATTCGGTCAAAGTTT 57.189 25.926 0.00 0.00 0.00 2.66
554 567 9.810545 TTTTTCTTCATAAATTCGGTCAAAGTT 57.189 25.926 0.00 0.00 0.00 2.66
555 568 9.981114 ATTTTTCTTCATAAATTCGGTCAAAGT 57.019 25.926 0.00 0.00 0.00 2.66
558 571 9.849166 GGTATTTTTCTTCATAAATTCGGTCAA 57.151 29.630 0.00 0.00 0.00 3.18
559 572 9.015367 TGGTATTTTTCTTCATAAATTCGGTCA 57.985 29.630 0.00 0.00 0.00 4.02
560 573 9.849166 TTGGTATTTTTCTTCATAAATTCGGTC 57.151 29.630 0.00 0.00 0.00 4.79
561 574 9.634163 GTTGGTATTTTTCTTCATAAATTCGGT 57.366 29.630 0.00 0.00 0.00 4.69
562 575 9.632807 TGTTGGTATTTTTCTTCATAAATTCGG 57.367 29.630 0.00 0.00 0.00 4.30
571 584 9.695526 CATTCTGAATGTTGGTATTTTTCTTCA 57.304 29.630 19.74 0.00 34.18 3.02
587 600 8.355272 TGTTGTTGATTTTCACATTCTGAATG 57.645 30.769 24.79 24.79 44.48 2.67
588 601 9.550406 AATGTTGTTGATTTTCACATTCTGAAT 57.450 25.926 0.00 0.00 38.74 2.57
589 602 8.945481 AATGTTGTTGATTTTCACATTCTGAA 57.055 26.923 0.00 0.00 37.08 3.02
590 603 9.681692 CTAATGTTGTTGATTTTCACATTCTGA 57.318 29.630 0.00 0.00 0.00 3.27
591 604 9.681692 TCTAATGTTGTTGATTTTCACATTCTG 57.318 29.630 0.00 0.00 0.00 3.02
594 607 8.928733 GCATCTAATGTTGTTGATTTTCACATT 58.071 29.630 0.00 0.00 0.00 2.71
595 608 7.274033 CGCATCTAATGTTGTTGATTTTCACAT 59.726 33.333 0.00 0.00 0.00 3.21
596 609 6.581919 CGCATCTAATGTTGTTGATTTTCACA 59.418 34.615 0.00 0.00 0.00 3.58
597 610 6.582295 ACGCATCTAATGTTGTTGATTTTCAC 59.418 34.615 0.00 0.00 0.00 3.18
598 611 6.676950 ACGCATCTAATGTTGTTGATTTTCA 58.323 32.000 0.00 0.00 0.00 2.69
599 612 6.801377 TGACGCATCTAATGTTGTTGATTTTC 59.199 34.615 0.00 0.00 0.00 2.29
600 613 6.676950 TGACGCATCTAATGTTGTTGATTTT 58.323 32.000 0.00 0.00 0.00 1.82
601 614 6.252967 TGACGCATCTAATGTTGTTGATTT 57.747 33.333 0.00 0.00 0.00 2.17
602 615 5.878332 TGACGCATCTAATGTTGTTGATT 57.122 34.783 0.00 0.00 0.00 2.57
603 616 5.585844 TCATGACGCATCTAATGTTGTTGAT 59.414 36.000 0.00 0.00 0.00 2.57
604 617 4.934602 TCATGACGCATCTAATGTTGTTGA 59.065 37.500 0.00 0.00 0.00 3.18
605 618 5.220557 TCATGACGCATCTAATGTTGTTG 57.779 39.130 0.00 0.00 0.00 3.33
606 619 6.441093 AATCATGACGCATCTAATGTTGTT 57.559 33.333 0.00 0.00 0.00 2.83
607 620 6.441093 AAATCATGACGCATCTAATGTTGT 57.559 33.333 0.00 0.00 0.00 3.32
608 621 8.124823 ACTAAAATCATGACGCATCTAATGTTG 58.875 33.333 0.00 0.00 0.00 3.33
609 622 8.213518 ACTAAAATCATGACGCATCTAATGTT 57.786 30.769 0.00 0.00 0.00 2.71
610 623 7.792374 ACTAAAATCATGACGCATCTAATGT 57.208 32.000 0.00 0.00 0.00 2.71
611 624 9.507280 AAAACTAAAATCATGACGCATCTAATG 57.493 29.630 0.00 0.00 0.00 1.90
612 625 9.722056 GAAAACTAAAATCATGACGCATCTAAT 57.278 29.630 0.00 0.00 0.00 1.73
613 626 8.726068 TGAAAACTAAAATCATGACGCATCTAA 58.274 29.630 0.00 0.00 0.00 2.10
614 627 8.262715 TGAAAACTAAAATCATGACGCATCTA 57.737 30.769 0.00 0.00 0.00 1.98
615 628 7.144722 TGAAAACTAAAATCATGACGCATCT 57.855 32.000 0.00 0.00 0.00 2.90
616 629 7.975866 ATGAAAACTAAAATCATGACGCATC 57.024 32.000 0.00 0.00 32.77 3.91
618 631 9.288124 CAATATGAAAACTAAAATCATGACGCA 57.712 29.630 0.00 0.00 35.53 5.24
619 632 9.289303 ACAATATGAAAACTAAAATCATGACGC 57.711 29.630 0.00 0.00 35.53 5.19
705 718 6.128063 GCATAAGAATTGTCTGAAGTCAAGCT 60.128 38.462 0.00 0.00 33.05 3.74
706 719 6.026513 GCATAAGAATTGTCTGAAGTCAAGC 58.973 40.000 0.00 0.00 33.05 4.01
707 720 6.128445 ACGCATAAGAATTGTCTGAAGTCAAG 60.128 38.462 0.00 0.00 33.05 3.02
709 722 5.120674 CACGCATAAGAATTGTCTGAAGTCA 59.879 40.000 0.00 0.00 33.05 3.41
711 724 5.237815 TCACGCATAAGAATTGTCTGAAGT 58.762 37.500 0.00 0.00 33.05 3.01
712 725 5.784750 TCACGCATAAGAATTGTCTGAAG 57.215 39.130 0.00 0.00 33.05 3.02
713 726 5.700832 ACTTCACGCATAAGAATTGTCTGAA 59.299 36.000 0.00 0.00 33.05 3.02
715 728 5.536554 ACTTCACGCATAAGAATTGTCTG 57.463 39.130 0.00 0.00 33.05 3.51
716 729 6.398918 AGTACTTCACGCATAAGAATTGTCT 58.601 36.000 0.00 0.00 34.72 3.41
717 730 6.648725 AGTACTTCACGCATAAGAATTGTC 57.351 37.500 0.00 0.00 0.00 3.18
718 731 6.255887 GCTAGTACTTCACGCATAAGAATTGT 59.744 38.462 0.00 0.00 0.00 2.71
719 732 6.477033 AGCTAGTACTTCACGCATAAGAATTG 59.523 38.462 0.00 0.00 0.00 2.32
720 733 6.574350 AGCTAGTACTTCACGCATAAGAATT 58.426 36.000 0.00 0.00 0.00 2.17
725 738 6.446781 ACTTAGCTAGTACTTCACGCATAA 57.553 37.500 0.00 0.90 34.56 1.90
727 740 4.985538 ACTTAGCTAGTACTTCACGCAT 57.014 40.909 0.00 0.00 34.56 4.73
729 742 5.878133 AGTAACTTAGCTAGTACTTCACGC 58.122 41.667 0.00 0.00 35.54 5.34
730 743 7.064371 TGAGAGTAACTTAGCTAGTACTTCACG 59.936 40.741 0.00 0.00 35.54 4.35
731 744 8.177013 GTGAGAGTAACTTAGCTAGTACTTCAC 58.823 40.741 21.26 21.26 35.54 3.18
741 754 9.059260 GCTAGTTATAGTGAGAGTAACTTAGCT 57.941 37.037 0.00 0.00 38.95 3.32
742 755 8.291740 GGCTAGTTATAGTGAGAGTAACTTAGC 58.708 40.741 2.79 8.78 38.95 3.09
743 756 9.563748 AGGCTAGTTATAGTGAGAGTAACTTAG 57.436 37.037 2.79 1.54 38.95 2.18
745 758 8.053963 TCAGGCTAGTTATAGTGAGAGTAACTT 58.946 37.037 2.79 0.00 38.95 2.66
746 759 7.575505 TCAGGCTAGTTATAGTGAGAGTAACT 58.424 38.462 0.00 0.00 40.60 2.24
747 760 7.804843 TCAGGCTAGTTATAGTGAGAGTAAC 57.195 40.000 0.00 0.00 0.00 2.50
748 761 8.818622 TTTCAGGCTAGTTATAGTGAGAGTAA 57.181 34.615 0.00 0.00 0.00 2.24
751 764 7.575414 TCTTTCAGGCTAGTTATAGTGAGAG 57.425 40.000 0.00 0.00 0.00 3.20
752 765 7.956328 TTCTTTCAGGCTAGTTATAGTGAGA 57.044 36.000 0.00 0.00 0.00 3.27
753 766 8.470805 TCTTTCTTTCAGGCTAGTTATAGTGAG 58.529 37.037 0.00 0.00 0.00 3.51
754 767 8.362464 TCTTTCTTTCAGGCTAGTTATAGTGA 57.638 34.615 0.00 0.00 0.00 3.41
755 768 9.436957 TTTCTTTCTTTCAGGCTAGTTATAGTG 57.563 33.333 0.00 0.00 0.00 2.74
757 770 8.596380 CGTTTCTTTCTTTCAGGCTAGTTATAG 58.404 37.037 0.00 0.00 0.00 1.31
760 773 6.518493 TCGTTTCTTTCTTTCAGGCTAGTTA 58.482 36.000 0.00 0.00 0.00 2.24
761 774 5.365619 TCGTTTCTTTCTTTCAGGCTAGTT 58.634 37.500 0.00 0.00 0.00 2.24
762 775 4.957296 TCGTTTCTTTCTTTCAGGCTAGT 58.043 39.130 0.00 0.00 0.00 2.57
763 776 5.236478 TGTTCGTTTCTTTCTTTCAGGCTAG 59.764 40.000 0.00 0.00 0.00 3.42
764 777 5.120399 TGTTCGTTTCTTTCTTTCAGGCTA 58.880 37.500 0.00 0.00 0.00 3.93
765 778 3.945285 TGTTCGTTTCTTTCTTTCAGGCT 59.055 39.130 0.00 0.00 0.00 4.58
766 779 4.287238 TGTTCGTTTCTTTCTTTCAGGC 57.713 40.909 0.00 0.00 0.00 4.85
767 780 5.515270 GGTTTGTTCGTTTCTTTCTTTCAGG 59.485 40.000 0.00 0.00 0.00 3.86
768 781 6.090129 TGGTTTGTTCGTTTCTTTCTTTCAG 58.910 36.000 0.00 0.00 0.00 3.02
778 791 3.003275 TGCTGAGATGGTTTGTTCGTTTC 59.997 43.478 0.00 0.00 0.00 2.78
780 793 2.571212 TGCTGAGATGGTTTGTTCGTT 58.429 42.857 0.00 0.00 0.00 3.85
792 805 2.035704 CCGTGAGCTAAGATGCTGAGAT 59.964 50.000 0.00 0.00 44.17 2.75
798 811 1.086696 TTTGCCGTGAGCTAAGATGC 58.913 50.000 0.00 0.00 44.23 3.91
803 816 3.396260 AGTAAGTTTGCCGTGAGCTAA 57.604 42.857 0.00 0.00 44.23 3.09
866 886 1.845809 CGCCTGCTCTGTTTGACCAC 61.846 60.000 0.00 0.00 0.00 4.16
952 980 2.270850 GCCTTGCGATGGTGGGTA 59.729 61.111 0.00 0.00 0.00 3.69
958 986 4.883354 GAGGGGGCCTTGCGATGG 62.883 72.222 0.84 0.00 31.76 3.51
960 988 3.483869 GAGAGGGGGCCTTGCGAT 61.484 66.667 0.84 0.00 31.76 4.58
963 991 3.468326 GATCGAGAGGGGGCCTTGC 62.468 68.421 0.84 0.00 31.76 4.01
967 995 3.934962 GCTGATCGAGAGGGGGCC 61.935 72.222 0.00 0.00 0.00 5.80
968 996 3.157252 TGCTGATCGAGAGGGGGC 61.157 66.667 0.00 0.00 0.00 5.80
973 1017 1.141234 TGCTGCTGCTGATCGAGAG 59.859 57.895 17.00 0.00 40.48 3.20
1022 1072 2.548295 GCCGGTTTCTTTGCGGACA 61.548 57.895 1.90 0.00 0.00 4.02
1027 1077 2.050442 CACGGCCGGTTTCTTTGC 60.050 61.111 31.76 0.00 0.00 3.68
1197 1416 2.354729 CAGATGGCCCGGAACCAA 59.645 61.111 18.63 4.55 41.49 3.67
1282 1501 4.849329 CACGTACCCGAGCTCCGC 62.849 72.222 8.47 0.00 37.88 5.54
1715 1934 4.083110 CCTGCTGTAATTCTTCCTTGTGTG 60.083 45.833 0.00 0.00 0.00 3.82
2118 2355 1.128692 GTACTTGCGCAATGTGGACTC 59.871 52.381 25.26 5.03 0.00 3.36
2143 2401 3.715628 ATTTTCTGCACTTGTGGTGTC 57.284 42.857 2.81 0.00 46.86 3.67
2155 2413 1.195900 TGGCACGACGTTATTTTCTGC 59.804 47.619 0.00 0.00 0.00 4.26
2156 2414 3.740044 ATGGCACGACGTTATTTTCTG 57.260 42.857 0.00 0.00 0.00 3.02
2204 2462 2.202492 CGTCGCCGGAGAAGACAG 60.202 66.667 15.65 6.34 34.46 3.51
2245 2503 3.121030 CTGCTGCACGTACCTGCC 61.121 66.667 13.31 1.19 36.21 4.85
2276 2538 0.450184 CACGGGCCTATTCCAAAACG 59.550 55.000 0.84 0.00 0.00 3.60
2315 2577 1.951631 GCTCCGATTAGCTCACCGC 60.952 63.158 0.00 0.00 39.50 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.