>input_sequence_81295
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---ATGGAGCG------CGGCCAAGAAGCGCTGTCCGCAAAGAAACCGGCCGTGG-------------------------
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----------------------------------------------------------------AGGTGACGCTCCGGCG
GTTCAGCCTCGCCGACGTGGACGCCATGATGGCGTGGGCGTCGGACCCGCAGGTGGCCGCCCCCTGCCGCTGGGAGCCCT
ACGAGTCCACGGAGCCCCTGCTCGCCTTCATCCGCGACGCCGTGCTGCCGCACCCTTGGTTCCGGGCCATCTGCCTCGCC
GGCGACGACGACCGCCCCGTCGGCGCGATCTCCGTGTCACCGACGGACGACGCGTGCCGCGCGGAGCTCGGGTACGTGCT
GGCGCGCGCGCACTGGGGCAAGGGCGTGGCCACGACGGCCGTGCGGCGGGCGGTGGCCGCGGTCATGGTGGTTGCGCGAA
CCGCTTGTGCCGATGCGTTTAGGTGA------------------------------------------------------
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>chr5A_1_TraesCS5A01G433700
CACGTAGAAATGTAACTGACAATGTTTACGGTGTTTGTATTCCGACTATGAGTCAATGAAGAGCATCACGTATCAAAAAG
AATACATCCATCCCTGTGACCCCAGCTCTCTAGATATGTTGCTTTCAGTCTCTGCTGA---TTTGTTTGATTGTTAACAT
GTCACGGTCATGTTG---------ACCGTTGACTTCAACGTAGCCGCCCGCACCTTCTTACTCCTTCTTTCCCCATCCAT
CCATCATCCTGGACACTTTGCCTGTCCTTTTCTTGTCTCTAATTCGTCTGAAATTTCTAAGGTTAGTCATAGTGGGGAAT
AACTTAGACTAGTGTCATGTTATTATCTTCATAATGCAAAGTAACATAATGCAAAGTAACATAATGCTAGTATCTTATAT
GGCTTCATTTATTAGCTTGTAGACTCATCTTGTCTTGGAAAACGCTATGTTACCACCTCTCATTAATTATTTGCCACATA
AGCAAAGATTTCTTTGAGTGTGCTATGTTACTCCCTCCGGTCCTTTTTAGTTCGCATATAAGGTTTGTCTGAAGTCAAAC
CTCGTAAACTTTGACCGAATTTATGAAGAAAAATACCAACATTCAGAATGTGAAAATCAACAACATTAGATGCGTCATGA
TTTTAGTTTTCATATTGTATAAATTTAGTATTGTAGATATTAATATTTTTTCATATAAATATGATCAAACTTTATGAAGC
TTGACTTCAGACAATTCTTATGCGTGAAGTACTAGCTAAGTTACTCTCACTATAACTAGCCTGAAAGAAAGAAACGAACA
AACCATCTCAGCATCTT-AGCTCACGGCAAACTTACTTGGCGATCAAGATTCCTA-GCCACAATTAGTA-----GTGTGA
CCGTGGTG--GTCAAACAGAGCAGGCGCTTGCTCTGGCTGGTACTCTGGT------TCCATCTATAAACACAGCCCACCA
GCTGCACCGCTGAGCTTACTACCCACCATCGCAAGG----------------CCCCCTCTCGATCAGCAGCAGCACACAG
CAAATGGAGCG------CGGCCAAGAAGCGCTGTCCGCAAAGAAACCGGCCGTGG-------------------------
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----------------------------------------------------------------AGGTGACGCTCCGGCG
GTTCAGCCTCGCCGACGTGGACGCCATGATGGCGTGGGCGTCGGACCCGCAGGTGGCCGCCCCCTGCCGCTGGGAGCCCT
ACGAGTCCACGGAGCCCCTGCTCGCCTTCATCCGCGACGCCGTGCTGCCGCACCCTTGGTTCCGGGCCATCTGCCTCGCC
GGCGACGACGACCGCCCCGTCGGCGCGATCTCCGTGTCACCGACGGACGACGCGTGCCGCGCGGAGCTCGGGTACGTGCT
GGCGCGCGCGCACTGGGGCAAGGGCGTGGCCACGACGGCCGTGCGGCGGGCGGTGGCCGCGGTCATGGTGGTTGCGCGAA
CCGCTTGTGCCGATGCGTTTAGGTGATCAGGACGTCGGGTAGCTAGGACGATTGTGACCAGATGAATCCAGAAAGTTTGC
AGGTGCACTGCTCTCTCTGTCTTGGAGACTCTGACTGACTCGCCATGAAAGCGAAATCCAAGGATTTGGCGAGAAGTTGA
CCGAACAATGGCGAATGCATATGCAAAAATAGCCTGGGCTCACCGGCGCGACCAACCTAACTAATTGCTACTATTATGGA
CCATGGTCTGTCAGTGTCAAGAAAGAGAATGGTTCTTGCTACAAAATAAGAGAGGATATGTGCGTACCAGTGCCACGCAC
AGCTTGCTCATCACACACAAGGAAGAATTACAGCAGGTCCAATGGGAACGACTTACGCCAACGTCGCGTTGCTCGGCCTT
GCCCTGGCCGTGACGGCCGCGCTGATGGCGTGCCGGTGCG------------------CGGCGCAGGCCGAGGCGCCGGC
GCCGGCGCCCTCAGGGGTCAGCGGGGGCTCCGGGTGCATGCCGGAGCTCGTGAGCCTGTCGCCGTGCATGGGCTACATGT
CGGGCGACGCGACGGCGCCCGGGGAGCCGTGCTGCGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGCAGTGCCTCTGC
GCGGTGCTCGGCGGCACGGCGGCCACGCTCGGCGTCGCCCTGGACGGTGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAG
GGTCCAGGCGCCGCCCGCCAGCCAGTGCGACGGTGAGTCCACATTGCGCAAGTACGAAC---------------------
GACACCACAAGTGCAGAAAATAACGTCGTGCCATTTGTGCCGTGCAGCCATGGGCGTTCCGCTGTCTTCTCCGGCGACGC
CCTACGATCCAGACGCTACGCCGGCAGGTACGT---GCA-GCAGAACCTCCTGCAAACGTTTTGGAATAGGCCCGTGGAG
ATGATCGGAGCGCATGGCGGTGAGCTAATCGGAGCGCCATTTTCTGTCTCTGGATCTGACGCAGGGTCTGGATCCAAGGC
CACTCCGACGCCTCAGTACTCCCGCGGGA
>chr5B_50
-------------------------------------------------GAGTCAATGAAGAGCGTCATTTATCAAAAGA
ATTA----CATCCCTGTGACCCCAGCTCTCTAGATATGTTGCTTTCAATCTTTGCTGATTTTTTGTTTGATTGTTAGCAT
GTCACGGTCATGTTGACCGTTGACACCGTTGACTTCAACGTAGCCGCCCCATCTTCTTCA-TCCTTCTTTCCCCATCCAT
CCATCATCCTTGACACTTGT-CTGTCCTTTTCTTGTCTCTAATTTGTCTGAAATTTGTACTCTTTTCGTCCG--------
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-----------------------------------------AAAATGTTGTCATTGAAATAGATGTATCTAGATGTATTT
TAGTTCTACATACATTCATTTTGATGACAAGTATTTTCGAATAGAAGGAGTACT-------TGAAAGAAACATACGAACA
AACCGTCTCACCATCGTGAGCTCACGGTAAGCTTACTTGGCGATCAAGATTCCTAAGCCACAATTAGTGTGAGTGTGTGA
CCGTGATGTGGTCAAACAGAGCAGGCGCTTGCTCTGGCTGGTACTCTGGTTCCACTTCCATCTATAAACACAGCCCACCT
GCTGCACCGCTGAGCTTACCACCAGACCTACCAATCCCCAAGAGGCCAAGACCCCCTTCTCGATCAGCAGCAGCACACAG
CAAATGGAGCAGGTGGCCGGCCAAGAAGCGCAGTCCACAAAGAAACCGGCCGTGAAGGTGACGCTAGGGATGTAAGTGGC
AAATAAATGACGTCCGCAATCCCGTTTAGTTAGTTTTTGCTAGGTTGATAGTTCATTTTCCCCAAACAAAAAAAATATCT
TTTTGAACCATTATATCATAAATGGACTTTAAACAGGATTAAACGGGACCCGGTTGACATCCCTAGGTGACGCTCCGGCG
GTTCGGCCTCCACGACGTGGACGCCATGATGGCGTGGGCGTCGGACCCGCAGGTGGCCGCCCCCTGCCGCTGGGAGCCCT
ACGAGTCCACGGAGCCCCTGCTCGCCTTCATCCGGGACGCCGTGCTGCCGCATCCCTAGTTCTGCGCCATCTGCCTCGCC
GGCGACGAC---CGCCCCGTCGGCGCGATCTCCGTGTCGCCGACGGACGACGCCCGCCGCACGGAGCTCGGGTACGTGCT
GGCGCGCGAGCACTGGGGGAAGGGCGTGGCCGCGGCGGCCGTGTGCAGGGCGGTGGCCGCGGT-----------------
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>chr5A_1363
GGC-----------------------------------------------------------------------------
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---------------------------------------------------------------CATGGTGGTTGCGCGAA
CCGCTTGTGCCGATGCGTTTAGGTGATCAGGACGTCGGGTAGCTAGGACGATTGTGACCAGATGAATCCAGAAAGTTTGC
AGGTGCACTGCTCTCTCTGTCTTGGAGACTCTGACTGACTCGCCATGAAAGCGAAGTCCAAGGATTTGGCGAGAAGTTGA
CCGAACAATGGCGAATGCATATGCAAAAATAGCCTGGGCTCACCGGCGCGACCAACCTAACTAATTGCTACTATTATGGA
CCATGGTCTGTCAGTGTCAAGAAAGAGAATGGTTCTTGCTACAAAATAAGAGAGGATATGTGCGTACCAGTGCCACGCAC
AGCTTGCTCATCATACACAAGGAAGAATTACAGCAGGTCCAATGGGAGCGACTTACGCCAACGTCGCGTTGCTCGGCCTT
GTCCTGGCCGTGGCGGCCGCGCTGCTGGCGTGCCAGTGCG------------------CGGCGCAGGCT-----------
-------CCATCTGGTGGCGGCGGCGGCTCTGGGTGCATGCCGGAGCTCGTGAGCCTGTCGCCGTGCATGGGCTACATGT
CAGGCAACGCGACGGCGCCCGGGGAGCCGTGCTGCGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGCGGTGCCTCTGC
GCGGTGCTTGGCGGCACGGCGGCCACGCTCGGCGTGGCCGTGGACGGCGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAA
GGTCCAGGCCCCGCCCGCCAGCCAGTGCGACGGTAACTTCCAATAGCTCAGAAAGGAGTGGTCTGGAAAATCTACTGCGA
AACACCACGGGT--GGACAATAACGTCGTGCCATTT-----GTGCAGCCATGGGAGCTCCGATGTCTTCTCCGGCGGCGC
CCTACGATCCCGACGTGCCCCCTGCAGGTACGT---GCATGCAGAACCTCCTCCAAATATTCTGTACACAGGCCGTGGAA
TTTACGTG-------------GAGCTCATGGGGGCATCATTTTCTGACG--------GACGCAGGGTCTGGATCGAAGGC
CACTCCAACACCTCAGTACTCCCACGGGA
>chr5D_1363
GGC-----------------------------------------------------------------------------
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---------------------------------------------------------------CATGGTGGTTGCGCGAA
CCGCTTGTGCTGATGCGTTTAGGTGATCAGGACGTGAGGTAGCTGGGAC---TGTGACCAGATGAATCCGCAAAGTTTGC
AGGTGCACTGCTCTCTCTGTCTCGGAGACTCCGACTGACTCGCCATGAAAGCGAAGTCCAAGGATTTGGCGAGAAGTTGA
CCGAACAATGGCGAATGCATATGCAAAAATAGCCTGGGCTCACCGGCGCGACCAACCTTAACTAACCG--CTATTATGGA
CCATGGTCTGTCAGTGTCAAGAACGAGAATGCTTCTTGCTACAAAATCAGAGAGCTGACCATG---CCAGTGCCACGCAC
AGTTCGCGCATCAAAGGCGAAG--GAATTACAACAAGTCCAATGGGAGCGGATCATAACGGCGTCTCGGCGCTCGGCCTT
GTCCTGGCCGTGGCGGCCGCGCTGCTGGCGTGCCAGTGCGCGGCACAGGTGCCGGCGCCGGCGCCGGCT-----------
-------CCATCTGGTGGCAGCGGGGGCTCTGGTTGCATGCCGGAGCTCGTCAGCCTTTCCCCGTGCATGGCCTACATGT
CGGGCAACGCAACGGCGCCCGGGGAGCCGTGCTGCGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGAAATGCCTCTGC
GCGGTGCTCGGCGGCACGGCGGCCACGCTCGGCGTGGCCCTGGACGGCGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAG
GGTCCAGGCCCCGCCCGCCAGCCAGTGCGACTGTAAGCCCACACTGCGCAAGTACGAAC---------------------
AACACCGCAAGT--AGAAAATAACGTCGTGCCATTTGTGCCGTGCAGCCATGGGTGTTCCGATGTCTTCTCCGGCGACGC
CCTACGATCCGGACGCTACGCCTGCAGGTACGT---GCA----GAACCTTCTGCAAATGTTTTGGAATAGGCCCGTGGAG
ATGATCGGAGCGCATCACGGTGAGCTAATCGGAGCGCCATTTTCTGTCTCTGGATCTGACGCAGGGTCTGGATCCAAGGC
CACTCCGACGCCTCAGTACTCCCGCGGGA
>chr5B_1363
GGC-----------------------------------------------------------------------------
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---------------------------------------------------------------CATGGTGGTTGCGCGAA
CCGCTTGTGCTGATGCGTTTAGGTGATCAGGACGTCAGGTAGCTAGGACGATTGTGACCAGATGAATCCACAAAGTTTGC
AGGTGCACTGCTCTCTCTGTCTCGGAGACTCTGACTGACTCGCCATGAAAGCGAAGTCCAAAGATTTGGCGAGAAGTTGA
CCGAACCATGGCGAATGCATATGGAC----AGCCTGGGCTCACCGGCGCGACCAACCTTAACTAACCG--CTATTATGGA
CCACGGTCTGTCAGTGTCAAGAACGAGAATGGTTCTTGCTACAAAATCAGCGAACTGACCATTC--CCAGTGCCACGCAT
AGTTCGCGCATCAAAGGGGAGCACGAATCACAACAAGTCCAATGGGAGCGGGTCATAACGGCGTGTCGGCGCTCGGCCTT
GTCCTGGCCGTGGCGGCCGCGCTGCTGGTGTGCCAGTGCGCGGCGCAGGCGCAGGCGCCGGCGCAGGCT-----------
-------CCATCTGGTGGCAGCGGGGGCTCTGGTTGCATGCCGGAGCTCGTCAGCCTGTCGCCGTGCATGGGCTACATGT
CGGGCAACGCGACGGCGCCCGGGGAGCCGTGCTGCGCGGCGGTGTCCGGCGTGCTGCGGTCCAGCCCGCGGTGCCTCTGC
GCGGTGCTCGGCGGCACGGCGGCCACGCTCGGCGTCGCCCTGGACGGCGCCCGCGCGCTGCAGATGCCCGCGGCGTGCAG
GGTCCAGGCGCCGCCCGCCAGCCAGTGCGACTGTAAGTTCACATTGCGCAAGTACGAAC---------------------
AACAGCACGAGT--AGAAAATAACGTCGTGCCATT-----CGTGCAGCCATGGGTGTTCCGATGTCTTCTCCGGCGACGC
CCTACGATCCCGACGTTACCCCTGCAGGTACGTGCAGCA----GAACCTCCTGCAAATGTTTTGTAATAGGCCCGTGGAG
CTGGTCGGAGCGCGTGACGGTGAGCTAATCGGAGCGCCATTTTCTGTCTCTGGATCTGACGCAGGGTCTGGATCCAAGGC
CACTCCGACGCCTCAGTACTCCCACGGGA
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S---SS--------SS
-S--SSSS---------------------------------------S---S------------------------S---
-------------------------------------------------SSS-S-SS-S-S-------------------
----------S-------SSS-----------------------S-----------S--SSS--SSSSSSS-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S--S----SS-----SSSSS-SSSSSSSSS-SSS
-S-SSS-SSSSSS----S-S-SSS---SSSSSSSSS-SSSS--SSSSS-S--SSSSSSSSS---------S-S-------
----S-----S----S-----------S--S-------------------------------------S-----------
-----S-------------------------------------------------------------------------S
-------------------S---SSS-S-SS---SS--------------------S-----------------------
----------S--------------------S----S-----------------S-------------------------
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----S-----SS--------------------------------------------------------------------
----------------------------------S-----------------S--S-S----S-S---------------
---------SSS--------------------------S--------------SS-----S-------------------
--------S---------S------------S--S--------S-SS---------------------------------
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-------------------------------------------------------S------------------------
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-------------S---------------------------------S--------------------------------
-S----------S-----------S---------S---------------------------------SSSSSSSSSSSS
SSSSSSS--S--S--S-S------------S-------------------------------------------------
-----S--------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
----------------------------------S---------------------------------------------
S-----------SS----------------------------------------S------S------------------
----------S-----------S----------------------------------S----------------------
----------------S---------------------------------------------------------------
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>forward_525
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-------------------------TGTTACTCCCTCCGGTCCTT-----------------------------------
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>reverse_2538
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---------------------------------------------------------CGTTTTGGAATAGGCCCGTG---
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