Multiple sequence alignment - TraesCS5A01G426200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G426200 chr5A 100.000 2609 0 0 1 2609 611541317 611543925 0.000000e+00 4819
1 TraesCS5A01G426200 chr5B 91.455 2200 90 39 420 2575 603984308 603986453 0.000000e+00 2931
2 TraesCS5A01G426200 chr5B 85.375 253 30 6 11 261 219989555 219989802 3.330000e-64 255
3 TraesCS5A01G426200 chr5D 91.773 1483 70 26 439 1907 489806238 489807682 0.000000e+00 2015
4 TraesCS5A01G426200 chr5D 91.608 715 38 10 1907 2609 489807715 489808419 0.000000e+00 968
5 TraesCS5A01G426200 chr5D 93.827 162 10 0 260 421 354806997 354806836 7.210000e-61 244
6 TraesCS5A01G426200 chr5D 91.566 166 12 2 260 424 31256033 31255869 7.260000e-56 228
7 TraesCS5A01G426200 chr4A 98.630 146 2 0 13 158 141122667 141122812 2.580000e-65 259
8 TraesCS5A01G426200 chr4A 91.124 169 15 0 253 421 677015155 677015323 2.020000e-56 230
9 TraesCS5A01G426200 chr6D 97.297 148 4 0 11 158 41542484 41542631 4.310000e-63 252
10 TraesCS5A01G426200 chr6D 91.975 162 13 0 260 421 199149646 199149807 7.260000e-56 228
11 TraesCS5A01G426200 chr3B 97.297 148 4 0 11 158 111133653 111133800 4.310000e-63 252
12 TraesCS5A01G426200 chr1A 84.825 257 27 7 13 264 569135208 569135457 5.580000e-62 248
13 TraesCS5A01G426200 chr1A 92.771 166 12 0 12 177 77277188 77277023 9.330000e-60 241
14 TraesCS5A01G426200 chr2A 89.055 201 18 3 68 265 724497921 724498120 2.010000e-61 246
15 TraesCS5A01G426200 chr7D 93.252 163 11 0 260 422 230275162 230275000 9.330000e-60 241
16 TraesCS5A01G426200 chr7D 92.593 162 12 0 260 421 386082247 386082086 1.560000e-57 233
17 TraesCS5A01G426200 chr7D 94.681 94 4 1 153 246 4623401 4623493 7.530000e-31 145
18 TraesCS5A01G426200 chr1B 94.268 157 9 0 12 168 554516545 554516701 9.330000e-60 241
19 TraesCS5A01G426200 chr1B 81.206 282 47 4 1306 1587 627820572 627820847 3.380000e-54 222
20 TraesCS5A01G426200 chr1B 84.656 189 29 0 1399 1587 639423953 639424141 3.430000e-44 189
21 TraesCS5A01G426200 chr1B 93.617 94 6 0 152 245 272976697 272976790 9.730000e-30 141
22 TraesCS5A01G426200 chr4B 83.721 258 36 6 13 269 262945530 262945782 3.360000e-59 239
23 TraesCS5A01G426200 chr4B 93.125 160 9 2 10 168 399269477 399269635 1.560000e-57 233
24 TraesCS5A01G426200 chr4B 88.947 190 17 2 238 425 429098304 429098491 5.620000e-57 231
25 TraesCS5A01G426200 chr1D 92.262 168 12 1 10 176 80642243 80642076 1.210000e-58 237
26 TraesCS5A01G426200 chr1D 92.593 162 12 0 260 421 344057866 344057705 1.560000e-57 233
27 TraesCS5A01G426200 chr1D 91.975 162 12 1 260 421 239562180 239562340 2.610000e-55 226
28 TraesCS5A01G426200 chr1D 78.931 318 56 7 1284 1597 5443630 5443940 3.400000e-49 206
29 TraesCS5A01G426200 chrUn 82.222 270 31 9 12 269 21367989 21367725 1.570000e-52 217
30 TraesCS5A01G426200 chr7A 79.233 313 57 4 1290 1598 692331729 692331421 7.320000e-51 211
31 TraesCS5A01G426200 chr3D 90.265 113 6 2 154 266 76376690 76376797 2.710000e-30 143
32 TraesCS5A01G426200 chr7B 94.505 91 5 0 156 246 201496475 201496565 9.730000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G426200 chr5A 611541317 611543925 2608 False 4819.0 4819 100.0000 1 2609 1 chr5A.!!$F1 2608
1 TraesCS5A01G426200 chr5B 603984308 603986453 2145 False 2931.0 2931 91.4550 420 2575 1 chr5B.!!$F2 2155
2 TraesCS5A01G426200 chr5D 489806238 489808419 2181 False 1491.5 2015 91.6905 439 2609 2 chr5D.!!$F1 2170

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 728 0.03438 TACAGCTCTCCCGCACTACT 60.034 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2513 0.245266 TGCCTACGATTCAACGAGCA 59.755 50.0 0.0 0.0 36.07 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.958288 ATGCTTGACCACTACTCCCT 58.042 50.000 0.00 0.00 0.00 4.20
20 21 1.267121 TGCTTGACCACTACTCCCTC 58.733 55.000 0.00 0.00 0.00 4.30
21 22 0.537653 GCTTGACCACTACTCCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
22 23 0.818296 CTTGACCACTACTCCCTCCG 59.182 60.000 0.00 0.00 0.00 4.63
23 24 0.113776 TTGACCACTACTCCCTCCGT 59.886 55.000 0.00 0.00 0.00 4.69
24 25 0.113776 TGACCACTACTCCCTCCGTT 59.886 55.000 0.00 0.00 0.00 4.44
25 26 0.816373 GACCACTACTCCCTCCGTTC 59.184 60.000 0.00 0.00 0.00 3.95
26 27 0.614134 ACCACTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
27 28 0.324460 CCACTACTCCCTCCGTTCCT 60.324 60.000 0.00 0.00 0.00 3.36
28 29 1.064166 CCACTACTCCCTCCGTTCCTA 60.064 57.143 0.00 0.00 0.00 2.94
29 30 2.622452 CCACTACTCCCTCCGTTCCTAA 60.622 54.545 0.00 0.00 0.00 2.69
30 31 3.094572 CACTACTCCCTCCGTTCCTAAA 58.905 50.000 0.00 0.00 0.00 1.85
31 32 3.705072 CACTACTCCCTCCGTTCCTAAAT 59.295 47.826 0.00 0.00 0.00 1.40
32 33 4.891756 CACTACTCCCTCCGTTCCTAAATA 59.108 45.833 0.00 0.00 0.00 1.40
33 34 5.539193 CACTACTCCCTCCGTTCCTAAATAT 59.461 44.000 0.00 0.00 0.00 1.28
34 35 6.718454 CACTACTCCCTCCGTTCCTAAATATA 59.282 42.308 0.00 0.00 0.00 0.86
35 36 7.232127 CACTACTCCCTCCGTTCCTAAATATAA 59.768 40.741 0.00 0.00 0.00 0.98
36 37 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
37 38 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
38 39 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
39 40 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
40 41 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
41 42 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
42 43 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
43 44 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
60 61 8.579682 AGTCTTTTTAGACATTTCAAATGCAC 57.420 30.769 10.21 5.06 41.02 4.57
61 62 8.416329 AGTCTTTTTAGACATTTCAAATGCACT 58.584 29.630 10.21 11.80 41.02 4.40
62 63 9.677567 GTCTTTTTAGACATTTCAAATGCACTA 57.322 29.630 10.21 10.89 38.59 2.74
63 64 9.677567 TCTTTTTAGACATTTCAAATGCACTAC 57.322 29.630 10.21 0.00 0.00 2.73
64 65 9.462174 CTTTTTAGACATTTCAAATGCACTACA 57.538 29.630 10.21 5.16 0.00 2.74
65 66 9.809096 TTTTTAGACATTTCAAATGCACTACAA 57.191 25.926 10.21 10.15 0.00 2.41
66 67 8.795786 TTTAGACATTTCAAATGCACTACAAC 57.204 30.769 10.21 0.00 0.00 3.32
67 68 6.389830 AGACATTTCAAATGCACTACAACA 57.610 33.333 10.21 0.00 0.00 3.33
68 69 6.985117 AGACATTTCAAATGCACTACAACAT 58.015 32.000 10.21 0.00 0.00 2.71
69 70 8.109705 AGACATTTCAAATGCACTACAACATA 57.890 30.769 10.21 0.00 0.00 2.29
70 71 8.023128 AGACATTTCAAATGCACTACAACATAC 58.977 33.333 10.21 0.00 0.00 2.39
71 72 6.801377 ACATTTCAAATGCACTACAACATACG 59.199 34.615 10.21 0.00 0.00 3.06
72 73 4.937696 TCAAATGCACTACAACATACGG 57.062 40.909 0.00 0.00 0.00 4.02
73 74 4.570930 TCAAATGCACTACAACATACGGA 58.429 39.130 0.00 0.00 0.00 4.69
74 75 5.182487 TCAAATGCACTACAACATACGGAT 58.818 37.500 0.00 0.00 0.00 4.18
75 76 5.064579 TCAAATGCACTACAACATACGGATG 59.935 40.000 5.94 5.94 39.16 3.51
77 78 4.722361 TGCACTACAACATACGGATGTA 57.278 40.909 15.10 0.00 45.93 2.29
78 79 5.270893 TGCACTACAACATACGGATGTAT 57.729 39.130 15.10 8.21 45.93 2.29
118 119 9.323985 AGAGTATAGATTCACTCATTTTGCTTC 57.676 33.333 4.70 0.00 42.99 3.86
119 120 8.136057 AGTATAGATTCACTCATTTTGCTTCG 57.864 34.615 0.00 0.00 0.00 3.79
120 121 4.088823 AGATTCACTCATTTTGCTTCGC 57.911 40.909 0.00 0.00 0.00 4.70
121 122 3.503363 AGATTCACTCATTTTGCTTCGCA 59.497 39.130 0.00 0.00 36.47 5.10
122 123 3.921119 TTCACTCATTTTGCTTCGCAT 57.079 38.095 0.00 0.00 38.76 4.73
123 124 3.206034 TCACTCATTTTGCTTCGCATG 57.794 42.857 0.00 0.00 38.76 4.06
124 125 2.553602 TCACTCATTTTGCTTCGCATGT 59.446 40.909 0.00 0.00 38.76 3.21
125 126 3.750652 TCACTCATTTTGCTTCGCATGTA 59.249 39.130 0.00 0.00 38.76 2.29
126 127 4.093514 CACTCATTTTGCTTCGCATGTAG 58.906 43.478 0.00 0.00 38.76 2.74
127 128 3.753272 ACTCATTTTGCTTCGCATGTAGT 59.247 39.130 0.00 0.00 38.76 2.73
128 129 4.142816 ACTCATTTTGCTTCGCATGTAGTC 60.143 41.667 0.00 0.00 38.76 2.59
129 130 3.750652 TCATTTTGCTTCGCATGTAGTCA 59.249 39.130 0.00 0.00 38.76 3.41
130 131 3.536158 TTTTGCTTCGCATGTAGTCAC 57.464 42.857 0.00 0.00 38.76 3.67
131 132 2.455674 TTGCTTCGCATGTAGTCACT 57.544 45.000 0.00 0.00 38.76 3.41
132 133 2.455674 TGCTTCGCATGTAGTCACTT 57.544 45.000 0.00 0.00 31.71 3.16
133 134 2.068519 TGCTTCGCATGTAGTCACTTG 58.931 47.619 0.00 0.00 31.71 3.16
134 135 2.069273 GCTTCGCATGTAGTCACTTGT 58.931 47.619 0.00 0.00 33.46 3.16
135 136 2.480419 GCTTCGCATGTAGTCACTTGTT 59.520 45.455 0.00 0.00 33.46 2.83
136 137 3.665323 GCTTCGCATGTAGTCACTTGTTG 60.665 47.826 0.00 0.00 33.46 3.33
137 138 2.412870 TCGCATGTAGTCACTTGTTGG 58.587 47.619 0.00 0.00 33.46 3.77
138 139 2.036604 TCGCATGTAGTCACTTGTTGGA 59.963 45.455 0.00 0.00 33.46 3.53
139 140 2.805671 CGCATGTAGTCACTTGTTGGAA 59.194 45.455 0.00 0.00 33.46 3.53
140 141 3.436704 CGCATGTAGTCACTTGTTGGAAT 59.563 43.478 0.00 0.00 33.46 3.01
141 142 4.436050 CGCATGTAGTCACTTGTTGGAATC 60.436 45.833 0.00 0.00 33.46 2.52
142 143 4.697352 GCATGTAGTCACTTGTTGGAATCT 59.303 41.667 0.00 0.00 33.46 2.40
143 144 5.163814 GCATGTAGTCACTTGTTGGAATCTC 60.164 44.000 0.00 0.00 33.46 2.75
144 145 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
145 146 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
146 147 6.925211 TGTAGTCACTTGTTGGAATCTCTAG 58.075 40.000 0.00 0.00 0.00 2.43
147 148 6.719829 TGTAGTCACTTGTTGGAATCTCTAGA 59.280 38.462 0.00 0.00 0.00 2.43
148 149 6.672266 AGTCACTTGTTGGAATCTCTAGAA 57.328 37.500 0.00 0.00 0.00 2.10
149 150 7.067496 AGTCACTTGTTGGAATCTCTAGAAA 57.933 36.000 0.00 0.00 0.00 2.52
150 151 7.158021 AGTCACTTGTTGGAATCTCTAGAAAG 58.842 38.462 0.00 0.00 0.00 2.62
151 152 7.015682 AGTCACTTGTTGGAATCTCTAGAAAGA 59.984 37.037 0.00 0.00 0.00 2.52
152 153 7.117092 GTCACTTGTTGGAATCTCTAGAAAGAC 59.883 40.741 0.00 0.00 0.00 3.01
153 154 7.015682 TCACTTGTTGGAATCTCTAGAAAGACT 59.984 37.037 0.00 0.00 0.00 3.24
154 155 7.659390 CACTTGTTGGAATCTCTAGAAAGACTT 59.341 37.037 0.00 0.00 0.00 3.01
155 156 8.871125 ACTTGTTGGAATCTCTAGAAAGACTTA 58.129 33.333 0.00 0.00 0.00 2.24
156 157 9.883142 CTTGTTGGAATCTCTAGAAAGACTTAT 57.117 33.333 0.00 0.00 0.00 1.73
161 162 9.357161 TGGAATCTCTAGAAAGACTTATACTCC 57.643 37.037 0.00 0.00 0.00 3.85
162 163 8.799367 GGAATCTCTAGAAAGACTTATACTCCC 58.201 40.741 0.00 0.00 0.00 4.30
163 164 9.582648 GAATCTCTAGAAAGACTTATACTCCCT 57.417 37.037 0.00 0.00 0.00 4.20
164 165 9.582648 AATCTCTAGAAAGACTTATACTCCCTC 57.417 37.037 0.00 0.00 0.00 4.30
165 166 7.519927 TCTCTAGAAAGACTTATACTCCCTCC 58.480 42.308 0.00 0.00 0.00 4.30
166 167 6.297582 TCTAGAAAGACTTATACTCCCTCCG 58.702 44.000 0.00 0.00 0.00 4.63
167 168 4.869451 AGAAAGACTTATACTCCCTCCGT 58.131 43.478 0.00 0.00 0.00 4.69
168 169 5.270794 AGAAAGACTTATACTCCCTCCGTT 58.729 41.667 0.00 0.00 0.00 4.44
169 170 5.720520 AGAAAGACTTATACTCCCTCCGTTT 59.279 40.000 0.00 0.00 0.00 3.60
170 171 5.595257 AAGACTTATACTCCCTCCGTTTC 57.405 43.478 0.00 0.00 0.00 2.78
171 172 4.607239 AGACTTATACTCCCTCCGTTTCA 58.393 43.478 0.00 0.00 0.00 2.69
172 173 5.021458 AGACTTATACTCCCTCCGTTTCAA 58.979 41.667 0.00 0.00 0.00 2.69
173 174 5.482878 AGACTTATACTCCCTCCGTTTCAAA 59.517 40.000 0.00 0.00 0.00 2.69
174 175 6.013984 AGACTTATACTCCCTCCGTTTCAAAA 60.014 38.462 0.00 0.00 0.00 2.44
175 176 6.718294 ACTTATACTCCCTCCGTTTCAAAAT 58.282 36.000 0.00 0.00 0.00 1.82
176 177 7.854337 ACTTATACTCCCTCCGTTTCAAAATA 58.146 34.615 0.00 0.00 0.00 1.40
177 178 7.985752 ACTTATACTCCCTCCGTTTCAAAATAG 59.014 37.037 0.00 0.00 0.00 1.73
178 179 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
179 180 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
180 181 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
181 182 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
182 183 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
183 184 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
184 185 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
185 186 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
186 187 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
187 188 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
188 189 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
189 190 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
190 191 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
218 219 8.685838 ACTAACTTTAATACAAAGTTGAGCCA 57.314 30.769 20.03 4.38 46.41 4.75
219 220 9.297037 ACTAACTTTAATACAAAGTTGAGCCAT 57.703 29.630 20.03 0.90 46.41 4.40
220 221 9.774742 CTAACTTTAATACAAAGTTGAGCCATC 57.225 33.333 20.03 0.00 46.41 3.51
221 222 8.409358 AACTTTAATACAAAGTTGAGCCATCT 57.591 30.769 12.88 0.00 45.58 2.90
222 223 9.515226 AACTTTAATACAAAGTTGAGCCATCTA 57.485 29.630 12.88 0.00 45.58 1.98
223 224 9.686683 ACTTTAATACAAAGTTGAGCCATCTAT 57.313 29.630 0.00 0.00 37.18 1.98
229 230 9.905713 ATACAAAGTTGAGCCATCTATTTTAGA 57.094 29.630 0.00 0.00 39.50 2.10
230 231 8.635765 ACAAAGTTGAGCCATCTATTTTAGAA 57.364 30.769 0.00 0.00 38.50 2.10
231 232 8.515414 ACAAAGTTGAGCCATCTATTTTAGAAC 58.485 33.333 0.00 0.00 38.50 3.01
232 233 6.910536 AGTTGAGCCATCTATTTTAGAACG 57.089 37.500 0.00 0.00 38.50 3.95
233 234 5.817816 AGTTGAGCCATCTATTTTAGAACGG 59.182 40.000 0.00 0.00 38.50 4.44
234 235 5.607939 TGAGCCATCTATTTTAGAACGGA 57.392 39.130 7.28 0.00 38.50 4.69
235 236 5.601662 TGAGCCATCTATTTTAGAACGGAG 58.398 41.667 7.28 0.00 38.50 4.63
236 237 4.962155 AGCCATCTATTTTAGAACGGAGG 58.038 43.478 7.28 0.00 38.50 4.30
237 238 4.654262 AGCCATCTATTTTAGAACGGAGGA 59.346 41.667 7.28 0.00 38.50 3.71
238 239 5.130477 AGCCATCTATTTTAGAACGGAGGAA 59.870 40.000 7.28 0.00 38.50 3.36
239 240 5.467063 GCCATCTATTTTAGAACGGAGGAAG 59.533 44.000 7.28 0.00 38.50 3.46
240 241 6.583562 CCATCTATTTTAGAACGGAGGAAGT 58.416 40.000 0.00 0.00 38.50 3.01
241 242 7.686127 GCCATCTATTTTAGAACGGAGGAAGTA 60.686 40.741 7.28 0.00 38.50 2.24
242 243 8.368668 CCATCTATTTTAGAACGGAGGAAGTAT 58.631 37.037 0.00 0.00 38.50 2.12
243 244 9.765795 CATCTATTTTAGAACGGAGGAAGTATT 57.234 33.333 0.00 0.00 38.50 1.89
245 246 9.595823 TCTATTTTAGAACGGAGGAAGTATTTG 57.404 33.333 0.00 0.00 0.00 2.32
246 247 7.625828 ATTTTAGAACGGAGGAAGTATTTGG 57.374 36.000 0.00 0.00 0.00 3.28
247 248 3.629142 AGAACGGAGGAAGTATTTGGG 57.371 47.619 0.00 0.00 0.00 4.12
248 249 3.178865 AGAACGGAGGAAGTATTTGGGA 58.821 45.455 0.00 0.00 0.00 4.37
249 250 3.585732 AGAACGGAGGAAGTATTTGGGAA 59.414 43.478 0.00 0.00 0.00 3.97
250 251 4.227527 AGAACGGAGGAAGTATTTGGGAAT 59.772 41.667 0.00 0.00 0.00 3.01
251 252 3.886123 ACGGAGGAAGTATTTGGGAATG 58.114 45.455 0.00 0.00 0.00 2.67
252 253 3.214328 CGGAGGAAGTATTTGGGAATGG 58.786 50.000 0.00 0.00 0.00 3.16
253 254 3.118038 CGGAGGAAGTATTTGGGAATGGA 60.118 47.826 0.00 0.00 0.00 3.41
254 255 4.464947 GGAGGAAGTATTTGGGAATGGAG 58.535 47.826 0.00 0.00 0.00 3.86
255 256 4.464947 GAGGAAGTATTTGGGAATGGAGG 58.535 47.826 0.00 0.00 0.00 4.30
256 257 3.205282 AGGAAGTATTTGGGAATGGAGGG 59.795 47.826 0.00 0.00 0.00 4.30
257 258 3.204382 GGAAGTATTTGGGAATGGAGGGA 59.796 47.826 0.00 0.00 0.00 4.20
258 259 4.464947 GAAGTATTTGGGAATGGAGGGAG 58.535 47.826 0.00 0.00 0.00 4.30
259 260 3.474920 AGTATTTGGGAATGGAGGGAGT 58.525 45.455 0.00 0.00 0.00 3.85
260 261 4.641868 AGTATTTGGGAATGGAGGGAGTA 58.358 43.478 0.00 0.00 0.00 2.59
261 262 4.660771 AGTATTTGGGAATGGAGGGAGTAG 59.339 45.833 0.00 0.00 0.00 2.57
262 263 2.961536 TTGGGAATGGAGGGAGTAGA 57.038 50.000 0.00 0.00 0.00 2.59
263 264 3.438131 TTGGGAATGGAGGGAGTAGAT 57.562 47.619 0.00 0.00 0.00 1.98
264 265 2.694397 TGGGAATGGAGGGAGTAGATG 58.306 52.381 0.00 0.00 0.00 2.90
265 266 2.250008 TGGGAATGGAGGGAGTAGATGA 59.750 50.000 0.00 0.00 0.00 2.92
266 267 2.903135 GGGAATGGAGGGAGTAGATGAG 59.097 54.545 0.00 0.00 0.00 2.90
267 268 3.582164 GGAATGGAGGGAGTAGATGAGT 58.418 50.000 0.00 0.00 0.00 3.41
268 269 4.449376 GGGAATGGAGGGAGTAGATGAGTA 60.449 50.000 0.00 0.00 0.00 2.59
269 270 4.770010 GGAATGGAGGGAGTAGATGAGTAG 59.230 50.000 0.00 0.00 0.00 2.57
270 271 3.885976 TGGAGGGAGTAGATGAGTAGG 57.114 52.381 0.00 0.00 0.00 3.18
271 272 3.404292 TGGAGGGAGTAGATGAGTAGGA 58.596 50.000 0.00 0.00 0.00 2.94
272 273 3.792114 TGGAGGGAGTAGATGAGTAGGAA 59.208 47.826 0.00 0.00 0.00 3.36
273 274 4.146564 GGAGGGAGTAGATGAGTAGGAAC 58.853 52.174 0.00 0.00 0.00 3.62
274 275 4.386536 GGAGGGAGTAGATGAGTAGGAACA 60.387 50.000 0.00 0.00 0.00 3.18
275 276 5.390387 GAGGGAGTAGATGAGTAGGAACAT 58.610 45.833 0.00 0.00 0.00 2.71
276 277 5.782925 AGGGAGTAGATGAGTAGGAACATT 58.217 41.667 0.00 0.00 0.00 2.71
277 278 6.923670 AGGGAGTAGATGAGTAGGAACATTA 58.076 40.000 0.00 0.00 0.00 1.90
278 279 6.778559 AGGGAGTAGATGAGTAGGAACATTAC 59.221 42.308 0.00 0.00 0.00 1.89
279 280 6.550108 GGGAGTAGATGAGTAGGAACATTACA 59.450 42.308 0.00 0.00 0.00 2.41
280 281 7.233757 GGGAGTAGATGAGTAGGAACATTACAT 59.766 40.741 0.00 0.00 0.00 2.29
281 282 8.085296 GGAGTAGATGAGTAGGAACATTACATG 58.915 40.741 0.00 0.00 0.00 3.21
282 283 7.437748 AGTAGATGAGTAGGAACATTACATGC 58.562 38.462 0.00 0.00 0.00 4.06
283 284 6.239217 AGATGAGTAGGAACATTACATGCA 57.761 37.500 0.00 0.00 0.00 3.96
284 285 6.835174 AGATGAGTAGGAACATTACATGCAT 58.165 36.000 0.00 0.00 0.00 3.96
285 286 7.285566 AGATGAGTAGGAACATTACATGCATT 58.714 34.615 0.00 0.00 0.00 3.56
286 287 8.432013 AGATGAGTAGGAACATTACATGCATTA 58.568 33.333 0.00 0.00 0.00 1.90
287 288 8.613060 ATGAGTAGGAACATTACATGCATTAG 57.387 34.615 0.00 0.00 0.00 1.73
288 289 7.564793 TGAGTAGGAACATTACATGCATTAGT 58.435 34.615 0.00 0.00 0.00 2.24
289 290 7.495606 TGAGTAGGAACATTACATGCATTAGTG 59.504 37.037 0.00 3.43 0.00 2.74
290 291 7.338710 AGTAGGAACATTACATGCATTAGTGT 58.661 34.615 0.00 4.05 0.00 3.55
291 292 6.441093 AGGAACATTACATGCATTAGTGTG 57.559 37.500 13.60 9.01 0.00 3.82
292 293 5.945784 AGGAACATTACATGCATTAGTGTGT 59.054 36.000 13.60 9.46 0.00 3.72
293 294 6.434028 AGGAACATTACATGCATTAGTGTGTT 59.566 34.615 15.97 15.97 33.57 3.32
294 295 7.039784 AGGAACATTACATGCATTAGTGTGTTT 60.040 33.333 16.59 6.50 32.15 2.83
295 296 7.273381 GGAACATTACATGCATTAGTGTGTTTC 59.727 37.037 16.59 13.47 32.15 2.78
296 297 7.452880 ACATTACATGCATTAGTGTGTTTCT 57.547 32.000 0.00 0.00 0.00 2.52
297 298 7.885297 ACATTACATGCATTAGTGTGTTTCTT 58.115 30.769 0.00 0.00 0.00 2.52
298 299 8.359642 ACATTACATGCATTAGTGTGTTTCTTT 58.640 29.630 0.00 0.00 0.00 2.52
299 300 9.195411 CATTACATGCATTAGTGTGTTTCTTTT 57.805 29.630 0.00 0.00 0.00 2.27
300 301 9.762933 ATTACATGCATTAGTGTGTTTCTTTTT 57.237 25.926 0.00 0.00 0.00 1.94
303 304 9.762933 ACATGCATTAGTGTGTTTCTTTTTAAT 57.237 25.926 0.00 0.00 0.00 1.40
310 311 9.862371 TTAGTGTGTTTCTTTTTAATTCTTGCA 57.138 25.926 0.00 0.00 0.00 4.08
311 312 8.947055 AGTGTGTTTCTTTTTAATTCTTGCAT 57.053 26.923 0.00 0.00 0.00 3.96
312 313 8.819974 AGTGTGTTTCTTTTTAATTCTTGCATG 58.180 29.630 0.00 0.00 0.00 4.06
313 314 7.583762 GTGTGTTTCTTTTTAATTCTTGCATGC 59.416 33.333 11.82 11.82 0.00 4.06
314 315 7.279536 TGTGTTTCTTTTTAATTCTTGCATGCA 59.720 29.630 18.46 18.46 0.00 3.96
315 316 8.121708 GTGTTTCTTTTTAATTCTTGCATGCAA 58.878 29.630 30.12 30.12 0.00 4.08
316 317 8.671921 TGTTTCTTTTTAATTCTTGCATGCAAA 58.328 25.926 31.37 19.79 35.33 3.68
317 318 9.667989 GTTTCTTTTTAATTCTTGCATGCAAAT 57.332 25.926 31.37 21.10 35.33 2.32
328 329 7.236674 TCTTGCATGCAAATATTTAATGTGC 57.763 32.000 31.37 16.30 35.33 4.57
336 337 8.557592 TGCAAATATTTAATGTGCATTGGAAA 57.442 26.923 7.51 2.30 40.14 3.13
337 338 9.175312 TGCAAATATTTAATGTGCATTGGAAAT 57.825 25.926 7.51 8.62 40.14 2.17
361 362 7.823745 TTAAAAATAAGATGGAGATGAGCCC 57.176 36.000 0.00 0.00 0.00 5.19
362 363 5.659849 AAAATAAGATGGAGATGAGCCCT 57.340 39.130 0.00 0.00 0.00 5.19
363 364 5.659849 AAATAAGATGGAGATGAGCCCTT 57.340 39.130 0.00 0.00 0.00 3.95
364 365 5.659849 AATAAGATGGAGATGAGCCCTTT 57.340 39.130 0.00 0.00 0.00 3.11
365 366 6.770286 AATAAGATGGAGATGAGCCCTTTA 57.230 37.500 0.00 0.00 0.00 1.85
366 367 6.770286 ATAAGATGGAGATGAGCCCTTTAA 57.230 37.500 0.00 0.00 0.00 1.52
367 368 5.456921 AAGATGGAGATGAGCCCTTTAAA 57.543 39.130 0.00 0.00 0.00 1.52
368 369 5.659849 AGATGGAGATGAGCCCTTTAAAT 57.340 39.130 0.00 0.00 0.00 1.40
369 370 6.023334 AGATGGAGATGAGCCCTTTAAATT 57.977 37.500 0.00 0.00 0.00 1.82
370 371 5.832060 AGATGGAGATGAGCCCTTTAAATTG 59.168 40.000 0.00 0.00 0.00 2.32
371 372 4.280819 TGGAGATGAGCCCTTTAAATTGG 58.719 43.478 0.00 0.00 0.00 3.16
372 373 4.017591 TGGAGATGAGCCCTTTAAATTGGA 60.018 41.667 7.84 0.00 0.00 3.53
373 374 4.956075 GGAGATGAGCCCTTTAAATTGGAA 59.044 41.667 7.84 0.00 0.00 3.53
374 375 5.422012 GGAGATGAGCCCTTTAAATTGGAAA 59.578 40.000 7.84 0.00 0.00 3.13
375 376 6.070824 GGAGATGAGCCCTTTAAATTGGAAAA 60.071 38.462 7.84 0.00 0.00 2.29
376 377 7.315066 AGATGAGCCCTTTAAATTGGAAAAA 57.685 32.000 7.84 0.00 0.00 1.94
377 378 7.161404 AGATGAGCCCTTTAAATTGGAAAAAC 58.839 34.615 7.84 0.00 0.00 2.43
378 379 6.240549 TGAGCCCTTTAAATTGGAAAAACA 57.759 33.333 7.84 0.00 0.00 2.83
379 380 6.653989 TGAGCCCTTTAAATTGGAAAAACAA 58.346 32.000 7.84 0.00 34.41 2.83
380 381 7.112779 TGAGCCCTTTAAATTGGAAAAACAAA 58.887 30.769 7.84 0.00 33.48 2.83
381 382 7.611855 TGAGCCCTTTAAATTGGAAAAACAAAA 59.388 29.630 7.84 0.00 33.48 2.44
382 383 8.354711 AGCCCTTTAAATTGGAAAAACAAAAA 57.645 26.923 7.84 0.00 33.48 1.94
412 413 8.622948 AAGATAGGCCTTATAAATCGAAAAGG 57.377 34.615 12.58 0.00 41.23 3.11
413 414 7.974504 AGATAGGCCTTATAAATCGAAAAGGA 58.025 34.615 12.58 0.00 40.85 3.36
414 415 8.097662 AGATAGGCCTTATAAATCGAAAAGGAG 58.902 37.037 12.58 0.00 40.85 3.69
415 416 5.377478 AGGCCTTATAAATCGAAAAGGAGG 58.623 41.667 0.00 8.28 40.85 4.30
416 417 4.519350 GGCCTTATAAATCGAAAAGGAGGG 59.481 45.833 14.39 4.22 40.85 4.30
417 418 5.374071 GCCTTATAAATCGAAAAGGAGGGA 58.626 41.667 14.39 0.00 40.85 4.20
418 419 5.470437 GCCTTATAAATCGAAAAGGAGGGAG 59.530 44.000 14.39 0.00 40.85 4.30
437 438 5.127356 AGGGAGTAGATGTTTTCTAAGGACG 59.873 44.000 0.00 0.00 38.67 4.79
647 651 2.529894 CGAGCATTTTAAAAATCGCCCG 59.470 45.455 15.84 12.48 0.00 6.13
676 680 1.616159 TGACCTCGATCGATGCCATA 58.384 50.000 19.78 0.60 0.00 2.74
683 687 1.888436 GATCGATGCCATAGCCCGGA 61.888 60.000 0.54 0.00 38.69 5.14
716 728 0.034380 TACAGCTCTCCCGCACTACT 60.034 55.000 0.00 0.00 0.00 2.57
717 729 1.316706 ACAGCTCTCCCGCACTACTC 61.317 60.000 0.00 0.00 0.00 2.59
718 730 2.115911 AGCTCTCCCGCACTACTCG 61.116 63.158 0.00 0.00 0.00 4.18
719 731 2.408241 GCTCTCCCGCACTACTCGT 61.408 63.158 0.00 0.00 0.00 4.18
720 732 1.094073 GCTCTCCCGCACTACTCGTA 61.094 60.000 0.00 0.00 0.00 3.43
721 733 0.656785 CTCTCCCGCACTACTCGTAC 59.343 60.000 0.00 0.00 0.00 3.67
737 749 2.290367 TCGTACCCGTACATGGTATTCG 59.710 50.000 12.91 12.42 40.34 3.34
742 754 1.604693 CCGTACATGGTATTCGCTCCC 60.605 57.143 0.00 0.00 0.00 4.30
871 883 0.179070 CCCAAACAAAAACCCCACCG 60.179 55.000 0.00 0.00 0.00 4.94
925 937 0.036306 ACCATTCCACCAACGACTCC 59.964 55.000 0.00 0.00 0.00 3.85
1653 1670 6.475402 CGTGGTTTTAATGTTCTTGCTCTTTT 59.525 34.615 0.00 0.00 0.00 2.27
1654 1671 7.305993 CGTGGTTTTAATGTTCTTGCTCTTTTC 60.306 37.037 0.00 0.00 0.00 2.29
1721 1740 8.712228 AAGAAAAGTTCAGGTTAGGAATCAAT 57.288 30.769 0.00 0.00 0.00 2.57
1739 1758 9.965824 GGAATCAATTAGAAGTTTCTTTTGTGA 57.034 29.630 0.00 0.90 38.70 3.58
1755 1774 3.644966 TGTGATCTGGGGTGTAAATCC 57.355 47.619 0.00 0.00 0.00 3.01
1819 1840 3.390639 CCTAGCATTCTGTCCTGAATCCT 59.609 47.826 0.00 0.00 34.77 3.24
1837 1858 6.825213 TGAATCCTGATACAAATGGTTGAGAG 59.175 38.462 0.00 0.00 38.20 3.20
1899 1920 9.646522 AGGGATTATTACTTGACATTAGCAAAT 57.353 29.630 0.00 0.00 0.00 2.32
1985 2039 5.953183 TCAAGCTCGAAATGTAAATGCATT 58.047 33.333 5.99 5.99 40.43 3.56
1995 2049 7.305820 CGAAATGTAAATGCATTCTCTCATTGC 60.306 37.037 13.38 16.17 38.03 3.56
2010 2067 2.613595 TCATTGCCATACACTGATTCGC 59.386 45.455 0.00 0.00 33.38 4.70
2044 2101 3.231965 CAAGTTCAGAATCAGCGCTTTG 58.768 45.455 7.50 1.25 0.00 2.77
2048 2105 2.048603 AGAATCAGCGCTTTGGGCC 61.049 57.895 7.50 0.00 42.59 5.80
2064 2122 2.076863 GGGCCGATTCGATATTCTTGG 58.923 52.381 7.83 0.00 0.00 3.61
2085 2146 3.494398 GGCTTCCAGTGTCAGTTAGAACA 60.494 47.826 0.00 0.00 0.00 3.18
2120 2181 8.172484 CGATAGTTCGGTATTCAATTTCAAACA 58.828 33.333 0.00 0.00 41.74 2.83
2203 2264 2.859165 TTGGTCTCTAAGCAAGGTGG 57.141 50.000 0.00 0.00 40.34 4.61
2204 2265 2.024176 TGGTCTCTAAGCAAGGTGGA 57.976 50.000 0.00 0.00 30.91 4.02
2205 2266 1.902508 TGGTCTCTAAGCAAGGTGGAG 59.097 52.381 0.00 0.00 30.91 3.86
2206 2267 1.903183 GGTCTCTAAGCAAGGTGGAGT 59.097 52.381 0.00 0.00 0.00 3.85
2287 2348 4.203226 TCATTGTGCTTTGGAGTAACACA 58.797 39.130 0.00 0.00 39.35 3.72
2294 2357 2.922740 TTGGAGTAACACAGACACCC 57.077 50.000 0.00 0.00 0.00 4.61
2442 2506 1.067071 TGTGCACTGATCTGCTGAGAG 60.067 52.381 19.41 0.52 38.07 3.20
2449 2513 1.272928 TGATCTGCTGAGAGTCTGGGT 60.273 52.381 0.00 0.00 0.00 4.51
2467 2531 0.645868 GTGCTCGTTGAATCGTAGGC 59.354 55.000 0.00 0.00 0.00 3.93
2477 2547 1.331756 GAATCGTAGGCACTGCATTGG 59.668 52.381 6.16 0.00 42.67 3.16
2490 2560 4.744631 CACTGCATTGGGTTCAGTTTTTAC 59.255 41.667 0.00 0.00 38.85 2.01
2524 2594 5.708948 AGAGAATCAGAGAAGAAAGTGTCG 58.291 41.667 0.00 0.00 37.82 4.35
2532 2602 5.926542 CAGAGAAGAAAGTGTCGGTTGATTA 59.073 40.000 0.00 0.00 0.00 1.75
2575 2645 3.823873 TGAAACACGGCAGAAAATGGTAT 59.176 39.130 0.00 0.00 0.00 2.73
2576 2646 5.004448 TGAAACACGGCAGAAAATGGTATA 58.996 37.500 0.00 0.00 0.00 1.47
2577 2647 4.957759 AACACGGCAGAAAATGGTATAC 57.042 40.909 0.00 0.00 0.00 1.47
2578 2648 3.945346 ACACGGCAGAAAATGGTATACA 58.055 40.909 5.01 0.00 0.00 2.29
2579 2649 3.938963 ACACGGCAGAAAATGGTATACAG 59.061 43.478 5.01 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.834263 GAGGGAGTAGTGGTCAAGCAT 59.166 52.381 0.00 0.00 0.00 3.79
1 2 1.267121 GAGGGAGTAGTGGTCAAGCA 58.733 55.000 0.00 0.00 0.00 3.91
2 3 0.537653 GGAGGGAGTAGTGGTCAAGC 59.462 60.000 0.00 0.00 0.00 4.01
3 4 0.818296 CGGAGGGAGTAGTGGTCAAG 59.182 60.000 0.00 0.00 0.00 3.02
4 5 0.113776 ACGGAGGGAGTAGTGGTCAA 59.886 55.000 0.00 0.00 0.00 3.18
5 6 0.113776 AACGGAGGGAGTAGTGGTCA 59.886 55.000 0.00 0.00 0.00 4.02
6 7 0.816373 GAACGGAGGGAGTAGTGGTC 59.184 60.000 0.00 0.00 0.00 4.02
7 8 0.614134 GGAACGGAGGGAGTAGTGGT 60.614 60.000 0.00 0.00 0.00 4.16
8 9 0.324460 AGGAACGGAGGGAGTAGTGG 60.324 60.000 0.00 0.00 0.00 4.00
9 10 2.431954 TAGGAACGGAGGGAGTAGTG 57.568 55.000 0.00 0.00 0.00 2.74
10 11 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
11 12 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
12 13 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
13 14 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
14 15 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
15 16 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
16 17 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
17 18 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
34 35 9.034544 GTGCATTTGAAATGTCTAAAAAGACTT 57.965 29.630 18.12 0.00 39.41 3.01
35 36 8.416329 AGTGCATTTGAAATGTCTAAAAAGACT 58.584 29.630 18.12 6.59 39.41 3.24
36 37 8.579682 AGTGCATTTGAAATGTCTAAAAAGAC 57.420 30.769 18.12 0.00 39.15 3.01
37 38 9.677567 GTAGTGCATTTGAAATGTCTAAAAAGA 57.322 29.630 18.12 1.03 0.00 2.52
38 39 9.462174 TGTAGTGCATTTGAAATGTCTAAAAAG 57.538 29.630 18.12 0.00 0.00 2.27
39 40 9.809096 TTGTAGTGCATTTGAAATGTCTAAAAA 57.191 25.926 18.12 14.22 0.00 1.94
40 41 9.243637 GTTGTAGTGCATTTGAAATGTCTAAAA 57.756 29.630 18.12 16.92 0.00 1.52
41 42 8.409371 TGTTGTAGTGCATTTGAAATGTCTAAA 58.591 29.630 18.12 13.01 0.00 1.85
42 43 7.935520 TGTTGTAGTGCATTTGAAATGTCTAA 58.064 30.769 18.12 7.66 0.00 2.10
43 44 7.503521 TGTTGTAGTGCATTTGAAATGTCTA 57.496 32.000 18.12 16.45 0.00 2.59
44 45 6.389830 TGTTGTAGTGCATTTGAAATGTCT 57.610 33.333 18.12 17.28 0.00 3.41
45 46 7.007367 CGTATGTTGTAGTGCATTTGAAATGTC 59.993 37.037 18.12 11.39 0.00 3.06
46 47 6.801377 CGTATGTTGTAGTGCATTTGAAATGT 59.199 34.615 18.12 2.65 0.00 2.71
47 48 6.251163 CCGTATGTTGTAGTGCATTTGAAATG 59.749 38.462 13.32 13.32 0.00 2.32
48 49 6.150307 TCCGTATGTTGTAGTGCATTTGAAAT 59.850 34.615 0.00 0.00 0.00 2.17
49 50 5.470437 TCCGTATGTTGTAGTGCATTTGAAA 59.530 36.000 0.00 0.00 0.00 2.69
50 51 4.998033 TCCGTATGTTGTAGTGCATTTGAA 59.002 37.500 0.00 0.00 0.00 2.69
51 52 4.570930 TCCGTATGTTGTAGTGCATTTGA 58.429 39.130 0.00 0.00 0.00 2.69
52 53 4.937696 TCCGTATGTTGTAGTGCATTTG 57.062 40.909 0.00 0.00 0.00 2.32
53 54 4.941263 ACATCCGTATGTTGTAGTGCATTT 59.059 37.500 0.00 0.00 44.07 2.32
54 55 4.513442 ACATCCGTATGTTGTAGTGCATT 58.487 39.130 0.00 0.00 44.07 3.56
55 56 4.137116 ACATCCGTATGTTGTAGTGCAT 57.863 40.909 0.00 0.00 44.07 3.96
56 57 3.603158 ACATCCGTATGTTGTAGTGCA 57.397 42.857 0.00 0.00 44.07 4.57
57 58 5.576337 CATACATCCGTATGTTGTAGTGC 57.424 43.478 0.00 0.00 46.70 4.40
92 93 9.323985 GAAGCAAAATGAGTGAATCTATACTCT 57.676 33.333 0.00 0.00 42.86 3.24
93 94 8.272176 CGAAGCAAAATGAGTGAATCTATACTC 58.728 37.037 0.00 0.00 42.77 2.59
94 95 8.136057 CGAAGCAAAATGAGTGAATCTATACT 57.864 34.615 0.00 0.00 0.00 2.12
115 116 3.120546 CCAACAAGTGACTACATGCGAAG 60.121 47.826 0.00 0.00 0.00 3.79
116 117 2.805671 CCAACAAGTGACTACATGCGAA 59.194 45.455 0.00 0.00 0.00 4.70
117 118 2.036604 TCCAACAAGTGACTACATGCGA 59.963 45.455 0.00 0.00 0.00 5.10
118 119 2.412870 TCCAACAAGTGACTACATGCG 58.587 47.619 0.00 0.00 0.00 4.73
119 120 4.697352 AGATTCCAACAAGTGACTACATGC 59.303 41.667 0.00 0.00 0.00 4.06
120 121 6.169094 AGAGATTCCAACAAGTGACTACATG 58.831 40.000 0.00 0.00 0.00 3.21
121 122 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
122 123 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
123 124 7.159322 TCTAGAGATTCCAACAAGTGACTAC 57.841 40.000 0.00 0.00 0.00 2.73
124 125 7.776618 TTCTAGAGATTCCAACAAGTGACTA 57.223 36.000 0.00 0.00 0.00 2.59
125 126 6.672266 TTCTAGAGATTCCAACAAGTGACT 57.328 37.500 0.00 0.00 0.00 3.41
126 127 7.117092 GTCTTTCTAGAGATTCCAACAAGTGAC 59.883 40.741 0.00 0.00 0.00 3.67
127 128 7.015682 AGTCTTTCTAGAGATTCCAACAAGTGA 59.984 37.037 0.00 0.00 0.00 3.41
128 129 7.158021 AGTCTTTCTAGAGATTCCAACAAGTG 58.842 38.462 0.00 0.00 0.00 3.16
129 130 7.309770 AGTCTTTCTAGAGATTCCAACAAGT 57.690 36.000 0.00 0.00 0.00 3.16
130 131 9.883142 ATAAGTCTTTCTAGAGATTCCAACAAG 57.117 33.333 0.00 0.00 0.00 3.16
135 136 9.357161 GGAGTATAAGTCTTTCTAGAGATTCCA 57.643 37.037 0.00 0.00 0.00 3.53
136 137 8.799367 GGGAGTATAAGTCTTTCTAGAGATTCC 58.201 40.741 0.00 0.00 0.00 3.01
137 138 9.582648 AGGGAGTATAAGTCTTTCTAGAGATTC 57.417 37.037 0.00 0.00 0.00 2.52
138 139 9.582648 GAGGGAGTATAAGTCTTTCTAGAGATT 57.417 37.037 0.00 0.00 0.00 2.40
139 140 8.168058 GGAGGGAGTATAAGTCTTTCTAGAGAT 58.832 40.741 0.00 0.00 0.00 2.75
140 141 7.519927 GGAGGGAGTATAAGTCTTTCTAGAGA 58.480 42.308 0.00 0.00 0.00 3.10
141 142 6.428771 CGGAGGGAGTATAAGTCTTTCTAGAG 59.571 46.154 0.00 0.00 0.00 2.43
142 143 6.126536 ACGGAGGGAGTATAAGTCTTTCTAGA 60.127 42.308 0.00 0.00 0.00 2.43
143 144 6.063404 ACGGAGGGAGTATAAGTCTTTCTAG 58.937 44.000 0.00 0.00 0.00 2.43
144 145 6.011122 ACGGAGGGAGTATAAGTCTTTCTA 57.989 41.667 0.00 0.00 0.00 2.10
145 146 4.869451 ACGGAGGGAGTATAAGTCTTTCT 58.131 43.478 0.00 0.00 0.00 2.52
146 147 5.595257 AACGGAGGGAGTATAAGTCTTTC 57.405 43.478 0.00 0.00 0.00 2.62
147 148 5.482878 TGAAACGGAGGGAGTATAAGTCTTT 59.517 40.000 0.00 0.00 0.00 2.52
148 149 5.021458 TGAAACGGAGGGAGTATAAGTCTT 58.979 41.667 0.00 0.00 0.00 3.01
149 150 4.607239 TGAAACGGAGGGAGTATAAGTCT 58.393 43.478 0.00 0.00 0.00 3.24
150 151 4.996788 TGAAACGGAGGGAGTATAAGTC 57.003 45.455 0.00 0.00 0.00 3.01
151 152 5.750352 TTTGAAACGGAGGGAGTATAAGT 57.250 39.130 0.00 0.00 0.00 2.24
152 153 8.202137 TCTATTTTGAAACGGAGGGAGTATAAG 58.798 37.037 0.00 0.00 0.00 1.73
153 154 8.081517 TCTATTTTGAAACGGAGGGAGTATAA 57.918 34.615 0.00 0.00 0.00 0.98
154 155 7.664552 TCTATTTTGAAACGGAGGGAGTATA 57.335 36.000 0.00 0.00 0.00 1.47
155 156 6.555463 TCTATTTTGAAACGGAGGGAGTAT 57.445 37.500 0.00 0.00 0.00 2.12
156 157 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
157 158 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
158 159 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
159 160 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
160 161 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
161 162 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
162 163 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
163 164 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
164 165 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
192 193 9.781633 TGGCTCAACTTTGTATTAAAGTTAGTA 57.218 29.630 15.03 5.98 45.57 1.82
193 194 8.685838 TGGCTCAACTTTGTATTAAAGTTAGT 57.314 30.769 15.03 0.00 45.57 2.24
194 195 9.774742 GATGGCTCAACTTTGTATTAAAGTTAG 57.225 33.333 15.03 13.40 45.57 2.34
195 196 9.515226 AGATGGCTCAACTTTGTATTAAAGTTA 57.485 29.630 15.03 3.25 45.57 2.24
197 198 9.686683 ATAGATGGCTCAACTTTGTATTAAAGT 57.313 29.630 0.00 0.00 41.82 2.66
203 204 9.905713 TCTAAAATAGATGGCTCAACTTTGTAT 57.094 29.630 0.00 0.00 0.00 2.29
204 205 9.733556 TTCTAAAATAGATGGCTCAACTTTGTA 57.266 29.630 0.00 0.00 34.22 2.41
205 206 8.515414 GTTCTAAAATAGATGGCTCAACTTTGT 58.485 33.333 0.00 0.00 34.22 2.83
206 207 7.693951 CGTTCTAAAATAGATGGCTCAACTTTG 59.306 37.037 0.00 0.00 34.22 2.77
207 208 7.148239 CCGTTCTAAAATAGATGGCTCAACTTT 60.148 37.037 0.00 0.00 34.22 2.66
208 209 6.316390 CCGTTCTAAAATAGATGGCTCAACTT 59.684 38.462 0.00 0.00 34.22 2.66
209 210 5.817816 CCGTTCTAAAATAGATGGCTCAACT 59.182 40.000 0.00 0.00 34.22 3.16
210 211 5.815740 TCCGTTCTAAAATAGATGGCTCAAC 59.184 40.000 0.00 0.00 34.22 3.18
211 212 5.984725 TCCGTTCTAAAATAGATGGCTCAA 58.015 37.500 0.00 0.00 34.22 3.02
212 213 5.453339 CCTCCGTTCTAAAATAGATGGCTCA 60.453 44.000 0.00 0.00 34.22 4.26
213 214 4.991687 CCTCCGTTCTAAAATAGATGGCTC 59.008 45.833 0.00 0.00 34.22 4.70
214 215 4.654262 TCCTCCGTTCTAAAATAGATGGCT 59.346 41.667 0.00 0.00 34.22 4.75
215 216 4.957296 TCCTCCGTTCTAAAATAGATGGC 58.043 43.478 0.00 0.00 34.22 4.40
216 217 6.583562 ACTTCCTCCGTTCTAAAATAGATGG 58.416 40.000 0.00 0.00 34.22 3.51
217 218 9.765795 AATACTTCCTCCGTTCTAAAATAGATG 57.234 33.333 0.00 0.00 34.22 2.90
219 220 9.595823 CAAATACTTCCTCCGTTCTAAAATAGA 57.404 33.333 0.00 0.00 0.00 1.98
220 221 8.827677 CCAAATACTTCCTCCGTTCTAAAATAG 58.172 37.037 0.00 0.00 0.00 1.73
221 222 7.771826 CCCAAATACTTCCTCCGTTCTAAAATA 59.228 37.037 0.00 0.00 0.00 1.40
222 223 6.602009 CCCAAATACTTCCTCCGTTCTAAAAT 59.398 38.462 0.00 0.00 0.00 1.82
223 224 5.941647 CCCAAATACTTCCTCCGTTCTAAAA 59.058 40.000 0.00 0.00 0.00 1.52
224 225 5.248934 TCCCAAATACTTCCTCCGTTCTAAA 59.751 40.000 0.00 0.00 0.00 1.85
225 226 4.778958 TCCCAAATACTTCCTCCGTTCTAA 59.221 41.667 0.00 0.00 0.00 2.10
226 227 4.355549 TCCCAAATACTTCCTCCGTTCTA 58.644 43.478 0.00 0.00 0.00 2.10
227 228 3.178865 TCCCAAATACTTCCTCCGTTCT 58.821 45.455 0.00 0.00 0.00 3.01
228 229 3.622166 TCCCAAATACTTCCTCCGTTC 57.378 47.619 0.00 0.00 0.00 3.95
229 230 4.270008 CATTCCCAAATACTTCCTCCGTT 58.730 43.478 0.00 0.00 0.00 4.44
230 231 3.371595 CCATTCCCAAATACTTCCTCCGT 60.372 47.826 0.00 0.00 0.00 4.69
231 232 3.118038 TCCATTCCCAAATACTTCCTCCG 60.118 47.826 0.00 0.00 0.00 4.63
232 233 4.464947 CTCCATTCCCAAATACTTCCTCC 58.535 47.826 0.00 0.00 0.00 4.30
233 234 4.464947 CCTCCATTCCCAAATACTTCCTC 58.535 47.826 0.00 0.00 0.00 3.71
234 235 3.205282 CCCTCCATTCCCAAATACTTCCT 59.795 47.826 0.00 0.00 0.00 3.36
235 236 3.204382 TCCCTCCATTCCCAAATACTTCC 59.796 47.826 0.00 0.00 0.00 3.46
236 237 4.079730 ACTCCCTCCATTCCCAAATACTTC 60.080 45.833 0.00 0.00 0.00 3.01
237 238 3.858638 ACTCCCTCCATTCCCAAATACTT 59.141 43.478 0.00 0.00 0.00 2.24
238 239 3.474920 ACTCCCTCCATTCCCAAATACT 58.525 45.455 0.00 0.00 0.00 2.12
239 240 3.953542 ACTCCCTCCATTCCCAAATAC 57.046 47.619 0.00 0.00 0.00 1.89
240 241 4.903149 TCTACTCCCTCCATTCCCAAATA 58.097 43.478 0.00 0.00 0.00 1.40
241 242 3.747852 TCTACTCCCTCCATTCCCAAAT 58.252 45.455 0.00 0.00 0.00 2.32
242 243 3.214694 TCTACTCCCTCCATTCCCAAA 57.785 47.619 0.00 0.00 0.00 3.28
243 244 2.961536 TCTACTCCCTCCATTCCCAA 57.038 50.000 0.00 0.00 0.00 4.12
244 245 2.250008 TCATCTACTCCCTCCATTCCCA 59.750 50.000 0.00 0.00 0.00 4.37
245 246 2.903135 CTCATCTACTCCCTCCATTCCC 59.097 54.545 0.00 0.00 0.00 3.97
246 247 3.582164 ACTCATCTACTCCCTCCATTCC 58.418 50.000 0.00 0.00 0.00 3.01
247 248 4.770010 CCTACTCATCTACTCCCTCCATTC 59.230 50.000 0.00 0.00 0.00 2.67
248 249 4.420552 TCCTACTCATCTACTCCCTCCATT 59.579 45.833 0.00 0.00 0.00 3.16
249 250 3.990933 TCCTACTCATCTACTCCCTCCAT 59.009 47.826 0.00 0.00 0.00 3.41
250 251 3.404292 TCCTACTCATCTACTCCCTCCA 58.596 50.000 0.00 0.00 0.00 3.86
251 252 4.146564 GTTCCTACTCATCTACTCCCTCC 58.853 52.174 0.00 0.00 0.00 4.30
252 253 4.794334 TGTTCCTACTCATCTACTCCCTC 58.206 47.826 0.00 0.00 0.00 4.30
253 254 4.883021 TGTTCCTACTCATCTACTCCCT 57.117 45.455 0.00 0.00 0.00 4.20
254 255 6.550108 TGTAATGTTCCTACTCATCTACTCCC 59.450 42.308 0.00 0.00 0.00 4.30
255 256 7.584122 TGTAATGTTCCTACTCATCTACTCC 57.416 40.000 0.00 0.00 0.00 3.85
274 275 9.762933 AAAAAGAAACACACTAATGCATGTAAT 57.237 25.926 0.00 0.00 0.00 1.89
277 278 9.762933 ATTAAAAAGAAACACACTAATGCATGT 57.237 25.926 0.00 0.00 0.00 3.21
284 285 9.862371 TGCAAGAATTAAAAAGAAACACACTAA 57.138 25.926 0.00 0.00 0.00 2.24
286 287 8.819974 CATGCAAGAATTAAAAAGAAACACACT 58.180 29.630 0.00 0.00 0.00 3.55
287 288 7.583762 GCATGCAAGAATTAAAAAGAAACACAC 59.416 33.333 14.21 0.00 0.00 3.82
288 289 7.279536 TGCATGCAAGAATTAAAAAGAAACACA 59.720 29.630 20.30 0.00 0.00 3.72
289 290 7.629130 TGCATGCAAGAATTAAAAAGAAACAC 58.371 30.769 20.30 0.00 0.00 3.32
290 291 7.783090 TGCATGCAAGAATTAAAAAGAAACA 57.217 28.000 20.30 0.00 0.00 2.83
291 292 9.667989 ATTTGCATGCAAGAATTAAAAAGAAAC 57.332 25.926 30.25 0.00 37.24 2.78
302 303 8.339714 GCACATTAAATATTTGCATGCAAGAAT 58.660 29.630 30.25 24.08 37.24 2.40
303 304 7.333672 TGCACATTAAATATTTGCATGCAAGAA 59.666 29.630 30.25 22.75 38.25 2.52
304 305 6.817140 TGCACATTAAATATTTGCATGCAAGA 59.183 30.769 30.25 22.99 38.25 3.02
305 306 7.006187 TGCACATTAAATATTTGCATGCAAG 57.994 32.000 30.25 18.69 38.25 4.01
306 307 6.980051 TGCACATTAAATATTTGCATGCAA 57.020 29.167 28.80 28.80 38.25 4.08
311 312 8.557592 TTTCCAATGCACATTAAATATTTGCA 57.442 26.923 12.76 12.76 46.59 4.08
335 336 8.864087 GGGCTCATCTCCATCTTATTTTTAATT 58.136 33.333 0.00 0.00 0.00 1.40
336 337 8.230306 AGGGCTCATCTCCATCTTATTTTTAAT 58.770 33.333 0.00 0.00 0.00 1.40
337 338 7.586349 AGGGCTCATCTCCATCTTATTTTTAA 58.414 34.615 0.00 0.00 0.00 1.52
338 339 7.154191 AGGGCTCATCTCCATCTTATTTTTA 57.846 36.000 0.00 0.00 0.00 1.52
339 340 6.023334 AGGGCTCATCTCCATCTTATTTTT 57.977 37.500 0.00 0.00 0.00 1.94
340 341 5.659849 AGGGCTCATCTCCATCTTATTTT 57.340 39.130 0.00 0.00 0.00 1.82
341 342 5.659849 AAGGGCTCATCTCCATCTTATTT 57.340 39.130 0.00 0.00 0.00 1.40
342 343 5.659849 AAAGGGCTCATCTCCATCTTATT 57.340 39.130 0.00 0.00 0.00 1.40
343 344 6.770286 TTAAAGGGCTCATCTCCATCTTAT 57.230 37.500 0.00 0.00 0.00 1.73
344 345 6.575244 TTTAAAGGGCTCATCTCCATCTTA 57.425 37.500 0.00 0.00 0.00 2.10
345 346 5.456921 TTTAAAGGGCTCATCTCCATCTT 57.543 39.130 0.00 0.00 0.00 2.40
346 347 5.659849 ATTTAAAGGGCTCATCTCCATCT 57.340 39.130 0.00 0.00 0.00 2.90
347 348 5.010415 CCAATTTAAAGGGCTCATCTCCATC 59.990 44.000 0.00 0.00 0.00 3.51
348 349 4.897670 CCAATTTAAAGGGCTCATCTCCAT 59.102 41.667 0.00 0.00 0.00 3.41
349 350 4.017591 TCCAATTTAAAGGGCTCATCTCCA 60.018 41.667 4.24 0.00 0.00 3.86
350 351 4.536765 TCCAATTTAAAGGGCTCATCTCC 58.463 43.478 4.24 0.00 0.00 3.71
351 352 6.530019 TTTCCAATTTAAAGGGCTCATCTC 57.470 37.500 4.24 0.00 0.00 2.75
352 353 6.933514 TTTTCCAATTTAAAGGGCTCATCT 57.066 33.333 4.24 0.00 0.00 2.90
353 354 6.934083 TGTTTTTCCAATTTAAAGGGCTCATC 59.066 34.615 4.24 0.00 0.00 2.92
354 355 6.836242 TGTTTTTCCAATTTAAAGGGCTCAT 58.164 32.000 4.24 0.00 0.00 2.90
355 356 6.240549 TGTTTTTCCAATTTAAAGGGCTCA 57.759 33.333 4.24 0.00 0.00 4.26
356 357 7.561021 TTTGTTTTTCCAATTTAAAGGGCTC 57.439 32.000 4.24 0.00 0.00 4.70
357 358 7.946381 TTTTGTTTTTCCAATTTAAAGGGCT 57.054 28.000 4.24 0.00 0.00 5.19
386 387 9.720769 CCTTTTCGATTTATAAGGCCTATCTTA 57.279 33.333 5.16 0.00 31.59 2.10
387 388 8.437575 TCCTTTTCGATTTATAAGGCCTATCTT 58.562 33.333 5.16 0.00 37.62 2.40
388 389 7.974504 TCCTTTTCGATTTATAAGGCCTATCT 58.025 34.615 5.16 0.00 37.62 1.98
389 390 7.334671 CCTCCTTTTCGATTTATAAGGCCTATC 59.665 40.741 5.16 3.64 37.62 2.08
390 391 7.168905 CCTCCTTTTCGATTTATAAGGCCTAT 58.831 38.462 5.16 2.54 37.62 2.57
391 392 6.465321 CCCTCCTTTTCGATTTATAAGGCCTA 60.465 42.308 5.16 0.00 37.62 3.93
392 393 5.377478 CCTCCTTTTCGATTTATAAGGCCT 58.623 41.667 0.00 0.00 37.62 5.19
393 394 4.519350 CCCTCCTTTTCGATTTATAAGGCC 59.481 45.833 0.00 0.00 37.62 5.19
394 395 5.374071 TCCCTCCTTTTCGATTTATAAGGC 58.626 41.667 0.00 0.00 37.62 4.35
395 396 6.592870 ACTCCCTCCTTTTCGATTTATAAGG 58.407 40.000 0.00 0.00 38.78 2.69
396 397 8.639761 TCTACTCCCTCCTTTTCGATTTATAAG 58.360 37.037 0.00 0.00 0.00 1.73
397 398 8.543293 TCTACTCCCTCCTTTTCGATTTATAA 57.457 34.615 0.00 0.00 0.00 0.98
398 399 8.585881 CATCTACTCCCTCCTTTTCGATTTATA 58.414 37.037 0.00 0.00 0.00 0.98
399 400 7.071321 ACATCTACTCCCTCCTTTTCGATTTAT 59.929 37.037 0.00 0.00 0.00 1.40
400 401 6.383147 ACATCTACTCCCTCCTTTTCGATTTA 59.617 38.462 0.00 0.00 0.00 1.40
401 402 5.189934 ACATCTACTCCCTCCTTTTCGATTT 59.810 40.000 0.00 0.00 0.00 2.17
402 403 4.717280 ACATCTACTCCCTCCTTTTCGATT 59.283 41.667 0.00 0.00 0.00 3.34
403 404 4.290942 ACATCTACTCCCTCCTTTTCGAT 58.709 43.478 0.00 0.00 0.00 3.59
404 405 3.709587 ACATCTACTCCCTCCTTTTCGA 58.290 45.455 0.00 0.00 0.00 3.71
405 406 4.473477 AACATCTACTCCCTCCTTTTCG 57.527 45.455 0.00 0.00 0.00 3.46
406 407 6.477253 AGAAAACATCTACTCCCTCCTTTTC 58.523 40.000 0.00 0.00 36.32 2.29
407 408 6.455690 AGAAAACATCTACTCCCTCCTTTT 57.544 37.500 0.00 0.00 36.32 2.27
408 409 7.311360 CCTTAGAAAACATCTACTCCCTCCTTT 60.311 40.741 0.00 0.00 40.38 3.11
409 410 6.157123 CCTTAGAAAACATCTACTCCCTCCTT 59.843 42.308 0.00 0.00 40.38 3.36
410 411 5.663556 CCTTAGAAAACATCTACTCCCTCCT 59.336 44.000 0.00 0.00 40.38 3.69
411 412 5.661759 TCCTTAGAAAACATCTACTCCCTCC 59.338 44.000 0.00 0.00 40.38 4.30
412 413 6.575267 GTCCTTAGAAAACATCTACTCCCTC 58.425 44.000 0.00 0.00 40.38 4.30
413 414 5.127356 CGTCCTTAGAAAACATCTACTCCCT 59.873 44.000 0.00 0.00 40.38 4.20
414 415 5.105432 ACGTCCTTAGAAAACATCTACTCCC 60.105 44.000 0.00 0.00 40.38 4.30
415 416 5.963594 ACGTCCTTAGAAAACATCTACTCC 58.036 41.667 0.00 0.00 40.38 3.85
611 613 0.658897 GCTCGTTCGGTTTGGTTTGA 59.341 50.000 0.00 0.00 0.00 2.69
612 614 0.378962 TGCTCGTTCGGTTTGGTTTG 59.621 50.000 0.00 0.00 0.00 2.93
647 651 0.807667 ATCGAGGTCAATGCTGCGTC 60.808 55.000 0.00 0.00 0.00 5.19
683 687 4.708177 AGAGCTGTATTAATTGGATGCGT 58.292 39.130 0.00 0.00 0.00 5.24
716 728 2.290367 CGAATACCATGTACGGGTACGA 59.710 50.000 16.00 0.21 43.30 3.43
717 729 2.653890 CGAATACCATGTACGGGTACG 58.346 52.381 16.00 12.81 43.30 3.67
718 730 2.035066 AGCGAATACCATGTACGGGTAC 59.965 50.000 16.00 2.05 43.30 3.34
719 731 2.294233 GAGCGAATACCATGTACGGGTA 59.706 50.000 16.01 16.01 44.52 3.69
720 732 1.068127 GAGCGAATACCATGTACGGGT 59.932 52.381 12.96 12.96 42.48 5.28
721 733 1.604693 GGAGCGAATACCATGTACGGG 60.605 57.143 2.04 2.04 0.00 5.28
737 749 1.438562 GAGACGACGACTAGGGGAGC 61.439 65.000 0.00 0.00 0.00 4.70
742 754 2.178890 CGGGGAGACGACGACTAGG 61.179 68.421 0.00 0.00 35.47 3.02
925 937 1.754226 GCTAGGAGAGGTGAAGGTGAG 59.246 57.143 0.00 0.00 0.00 3.51
1367 1384 1.871126 GCCCAGCTTCCTGTTCTTGC 61.871 60.000 0.00 0.00 37.38 4.01
1653 1670 6.753107 AAAACAAGAGAAAAAGGAACGAGA 57.247 33.333 0.00 0.00 0.00 4.04
1654 1671 7.916552 TCTAAAACAAGAGAAAAAGGAACGAG 58.083 34.615 0.00 0.00 0.00 4.18
1721 1740 6.490040 CCCCAGATCACAAAAGAAACTTCTAA 59.510 38.462 0.00 0.00 36.28 2.10
1739 1758 1.591768 ACCGGATTTACACCCCAGAT 58.408 50.000 9.46 0.00 0.00 2.90
1819 1840 5.253330 GGGAACTCTCAACCATTTGTATCA 58.747 41.667 0.00 0.00 34.02 2.15
1837 1858 2.233922 TCTGAACTTCTGATCGGGGAAC 59.766 50.000 0.62 0.00 0.00 3.62
1899 1920 3.295093 ACATTGTGACATTGACACCCAA 58.705 40.909 13.71 5.89 39.41 4.12
1955 2009 2.955660 ACATTTCGAGCTTGAAACCCAA 59.044 40.909 27.66 9.18 40.40 4.12
1957 2011 4.759516 TTACATTTCGAGCTTGAAACCC 57.240 40.909 27.66 0.00 40.40 4.11
1995 2049 3.181498 TGCATTTGCGAATCAGTGTATGG 60.181 43.478 0.00 0.00 45.83 2.74
2010 2067 3.004002 TCTGAACTTGTCTGCTGCATTTG 59.996 43.478 1.31 0.00 0.00 2.32
2044 2101 2.076863 CCAAGAATATCGAATCGGCCC 58.923 52.381 1.76 0.00 0.00 5.80
2048 2105 4.058124 TGGAAGCCAAGAATATCGAATCG 58.942 43.478 0.00 0.00 0.00 3.34
2064 2122 3.728845 TGTTCTAACTGACACTGGAAGC 58.271 45.455 0.00 0.00 37.60 3.86
2120 2181 0.550914 TTGGTCAACTTGCTGGAGGT 59.449 50.000 0.00 0.00 0.00 3.85
2202 2263 1.926426 AAGGGGGCTGCATGTACTCC 61.926 60.000 0.50 0.00 0.00 3.85
2203 2264 0.464554 GAAGGGGGCTGCATGTACTC 60.465 60.000 0.50 0.00 0.00 2.59
2204 2265 1.609783 GAAGGGGGCTGCATGTACT 59.390 57.895 0.50 0.00 0.00 2.73
2205 2266 1.453928 GGAAGGGGGCTGCATGTAC 60.454 63.158 0.50 0.00 0.00 2.90
2206 2267 2.689691 GGGAAGGGGGCTGCATGTA 61.690 63.158 0.50 0.00 0.00 2.29
2442 2506 1.079503 GATTCAACGAGCACCCAGAC 58.920 55.000 0.00 0.00 0.00 3.51
2449 2513 0.245266 TGCCTACGATTCAACGAGCA 59.755 50.000 0.00 0.00 36.07 4.26
2467 2531 3.457610 AAAACTGAACCCAATGCAGTG 57.542 42.857 7.29 7.29 41.65 3.66
2477 2547 1.335597 GCAGCCGGTAAAAACTGAACC 60.336 52.381 1.90 0.00 31.67 3.62
2490 2560 1.227497 GATTCTCTCCAGCAGCCGG 60.227 63.158 0.00 0.00 0.00 6.13
2524 2594 9.485591 CATAGTACGTTTGAAATGTAATCAACC 57.514 33.333 12.76 0.44 36.57 3.77
2532 2602 7.915293 TTCATCCATAGTACGTTTGAAATGT 57.085 32.000 7.99 7.99 0.00 2.71
2544 2614 3.449377 TCTGCCGTGTTTCATCCATAGTA 59.551 43.478 0.00 0.00 0.00 1.82
2545 2615 2.236146 TCTGCCGTGTTTCATCCATAGT 59.764 45.455 0.00 0.00 0.00 2.12
2546 2616 2.905075 TCTGCCGTGTTTCATCCATAG 58.095 47.619 0.00 0.00 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.