>input_sequence_74263
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--------------------------------------------------------ATGAACGCCGGTGCCCCGCCGGCG
CCCGGCCGGTTCACCCCGGGCGACGGCACCTCCGTGGGCATGTTCAGCTCCGACCGCATCGGCGGCTTCGGCTACGGCGT
CGGCGTCTCCGTCGGCATCCTCCTCCTCATCACCACCATCACGCTCGCCTCCTACTTCTGCACCCGCGCGCCCCCGCCCG
GCCCGGAGGCCGCCGCCGACGCCGAAGGGACGGCCCGGCGAAGGCGGCGTGCGCGGCGCCGCGAGGGCGGCGGCGACAAC
GATGGCGGCGGGGCAACCGGCGACGACGTCGACGTGGAGCTCGGCATCGACGAGGCCACGCTCAAGGGGTACCCGGAGGT
GGTGTACGGCGAGGCGCGGAGGAGCAAGAACAGGAAGCTGGGCACCACCTGCACCTGCTGCTCCGTGTGCCTCGACAACT
ACGGCGACGGCGACGTGCTCCGCATGCTGCCGGACTGCGGCCACCTGTTCCACCGGGAGTGCGTCGACCCCTGGCTCCGG
AAGCACCCGACCTGCCCCGTCTGCCGGACCTCGCCGCTGCCCAGCCCCTTGCCCACGCCCCTCGCGGAGGTCACGCCGCT
GGCCATGACGAGGCTGTCCTCCTGA-------------------------------------------------------
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>chr5A_1_TraesCS5A01G426200
ATGCTTGACCACTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGACATTTCAAATGCACTACAACATACGGATGTATG
TAGACATATTTTAGAGTATAGATTCACTCATTTTGCTTCGCATGTAGTCACTTGTTGGAATCTCTAGAAAGACTTATACT
CCCTCCGTTTCAAAATAGATGACTCAACTTTATACTAACTTTAATACAAAGTTGAGCCATCTATTTTAGAACGGAGGAAG
TATTTGGGAATGGAGGGAGTAGATGAGTAGGAACATTACATGCATTAGTGTGTTTCTTTTTAATTCTTGCATGCAAATAT
TTAATGTGCATTGGAAATTAAAAATAAGATGGAGATGAGCCCTTTAAATTGGAAAAACAAAAAAATTAAGATAGGCCTTA
TAAATCGAAAAGGAGGGAGTAGATGTTTTCTAAGGACGTATAAAAATTTGCACAGTATAGGTTCTCGCACAAGTTGGAAA
ACAAAATTGGA-AGAAAGACAACCGAAGAAGCCGCAAAAGTCAGCCCATGAACCATGATTTGCATTGACCACGGCGGAAC
TGACAAACAAGCAGAAATCAACAGCAAAAACATGCAGGAAAGAGGGCACCAATC--AAACCAAACCGAACGAGCATTTTA
AAAATCGCCCGACGCAGCATTGACCTCGATCGATGCCATAGCCCGGACGCATCCAA--TTAATACAGCTCTCCCGCAC--
----TACTCGTACCCGTACATGGTATTCGCTCCCCTAGTCGTCGTCTCCCCGTCCCGCTCCCCGCAACATGCAAAGCGTT
GACGTCCCCCTCGCAGCAACCTCCGTCCGCTGGATCCGAGCTCCCTCCCTCCCTTCCTTCGACCCCAAACAAAAACCCCA
CCGGACGATCAGGAATCGCTCTCCCCTCTCCACCACCACCATTCCACCAACGACTCCTCACCTTCACCTCTCCTAG---C
T--AGCTAGCTAGCCTCCGCTCGCTTCGGTCCAGCGGCGACGAGCGCGACGTCGGGATGAACGCCGGTGCCCCGCCGGCG
CCCGGCCGGTTCACCCCGGGCGACGGCACCTCCGTGGGCATGTTCAGCTCCGACCGCATCGGCGGCTTCGGCTACGGCGT
CGGCGTCTCCGTCGGCATCCTCCTCCTCATCACCACCATCACGCTCGCCTCCTACTTCTGCACCCGCGCGCCCCCGCCCG
GCCCGGAGGCCGCCGCCGACGCCGAAGGGACGGCCCGGCGAAGGCGGCGTGCGCGGCGCCGCGAGGGCGGCGGCGACAAC
GATGGCGGCGGGGCAACCGGCGACGACGTCGACGTGGAGCTCGGCATCGACGAGGCCACGCTCAAGGGGTACCCGGAGGT
GGTGTACGGCGAGGCGCGGAGGAGCAAGAACAGGAAGCTGGGCACCACCTGCACCTGCTGCTCCGTGTGCCTCGACAACT
ACGGCGACGGCGACGTGCTCCGCATGCTGCCGGACTGCGGCCACCTGTTCCACCGGGAGTGCGTCGACCCCTGGCTCCGG
AAGCACCCGACCTGCCCCGTCTGCCGGACCTCGCCGCTGCCCAGCCCCTTGCCCACGCCCCTCGCGGAGGTCACGCCGCT
GGCCATGACGAGGCTGTCCTCCTGACACCACACAGAGGTTCTTGCGTGGTTTTAATGTTCTTGCTCTTTTCTCGTTCCTT
TTTCTCTTGTTTTAGAAAATTGGGATTGGTG--AAAGAAAAGTTCAGGTTAGGAATCAATTAGAAGTTTCTTTTGTGATC
TGGGGTGTAAATCCGGTTTCAGCTTAGTTTCA--CTTCTGATGGAAATGCAAGTCAGCCTAGCATTCTGTCCTGAATCCT
GATACAAATGGTTGAGAGTTCCCCGATCAGAAGTTCAGAACATGTGCTCAAAGAGGGATTATTACTTGACATTAGCAAAT
TGGGT---G------------------------------TCAATGTCACAATGTAGAGTAGGTTGTCTTGAATATACTGA
ATCAAATGTTGGGTTTCAAGCTCGAAATGTAAATGCATTCTCTCATTGCCA---TACACTGATTCGCAAATGCAGCAGAC
AAGTTCAGAATCAGCGCTTTGGGCCGATTCGA-TATTCTTGGCTTCCAGTGTCAGT---TAGAACATCGAACAGCGATAG
TTCGGTATTCAATTTCAAACACCTCCAGCAAGTTGACCAATTTACAATTCCGGCAACCCCCCAAACTGAATCTTTAATAT
AATCTTGGTCTCTAAGCAAGGTGGAGTACATGCAGCCCCCTTCCCCCCAGGTTTGCAGGGTCAATCATGCGAAAACCCGT
AGTTTTCATTGTGCTTTGGAGTAACACAGACACC--CATGCGGCTTCATGTTCTACGAGACAAGATATAGAGCAAAATGA
CAGGCACCTTCGATTCCAGGGCACGCGACTTCTGCCTTGATCCGAACAAAACAATGACCGTCCATTTGAAT-TTTAACTT
ATTTTTGTGCACTGATCTGCTGAGAGTCTGGGTGCTCGTTGAATCGTAGGC------ACTGCATTGGGTTCAGTTTTTAC
CGGCTGCTGGAGAGAATCAGAGAAGAAAGTGTCGGTTGATTACATTTCAAACGTACTATGGATGAAACACGGCAGAAAAT
GGTATACAG-TAGAGGAGGTACTCCTGTATCAGGATTCG
>chr5B_420
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-------------------TAGATGTTTTCTAAGGACATATAAAAATTTGCACAGTATAGGTTCTCGGACAAGTTGGAAA
ACAAAATTGGA-AGAAAGACAACCGAAGAAGCCGCAAAAGTCAGCCCATGAACCATGATTTGCATTGACCACGGCGGAAC
TGACAAACAGGCAGAAATCAACAGCAAAAACATGCAGAAAGGAGCGCACCAAAT--AAATCAACCCGAACGAGCATTTTT
CAAAT-GCCCAACGCAGCATTGACCTCGATCGATGCT-----------GCATCCAA--TTAATACAGCTCTCCCGCAC--
----TAC------CCGTACATGGTATTCACTCCGCTAGTCGTCGTCTCCCCGTCCCGCTCCCCGCAACATGCAAAGCGTT
GACGTCCCCCTCGCAGCAACCTCCATCCGCTGGATCCGAGCTCCCTCCCTCCCTTTCTTCGACCCCAAACAAAAACCCCA
CCAGACGATCAGGAATCGCTCTCCCCTCTCCACCTCCACCATTCCACCAACGACTCGTCGCCTTCACCTCTCCTCATAGC
TAAAGCTAGCTAACCTCCGCTCGCTTCGGTCCA------------GCGACGTCGGGATGAACGCCGGTGGCCCGCCGGCG
CCCGGCCGGTTCACCCCGGGCGACGGCACCTCCGTGGGCATGTTCAGCTCCGACCGCATCGGCGGCTTCGGCTACGGCGT
CGGCGTCTCCGTCGGCATCCTCCTCCTCATCACCACCATCACCCTCGCCTCCTACTTCTGCACCCGCGCGCCCCCGCCCG
GCCCGGAGGCCGCCGCCGACGCAGACGGGGCTGCGCGGCGAAGGCGACGTGCGCGGCGCCGCGAGGGCGGCGGCGACAAC
GATGGCGGCGGGGCAGCCGGTGACGACGTCGACGTGGAGCTCGGCATCGACGAGGCCACGCTCAAGGGGTACCCGGAGGT
GGTGTACGGCGAGGCGCGGAGGAACAAGAACAAGAAGCTGGGCACCACCTGCACCTGCTGCTCCGTGTGCCTCGACAACT
ACGGCGACGGCGACGTGCTCCGGATGCTGCCGGACTGCGGCCACCTGTTCCACCGGGAGTGCGTCGACCCCTGGCTCCGG
AAGCACCCGACCTGCCCCGTCTGCCGGACCTCGCCGCTGCCCAGCCCCTTGCCCACGCCGCTCGCCGAGGTCACGCCGCT
GGCCATGACGAGGCTGTCCTCCTGACACCACACAGAGGTTCTTGCGTGGTTTTAATGTTCTTGCTCTTTCTTCGTTTCTT
TTTCTCTTGTTTTAGAAAATTGGGATTGTTG--AAAGAAAAGTTCAGGTTAGGAATCAAATAGAAATTTCTTTTGTGGTC
TGGGGTGTAAATCTGGTTTCAGCTTAGTTTCA--CTTCTGATGGAAATGCAAGTCAGCCTAGTATTCTGTGCTGAATCCG
GATACAGATGGTTGAGAATTCCCCGATCAGAAGTTCAGAACGTGTGCTCAAAGAGGGATTATCACTTGACATTAGCAAAC
TGGGT---GTAGAATTGTAGATCTCTGTTTGGCAAATGATCAATGTTACAATGTAGAGTAGTTTGTCTTGAATATACTGA
ATCAAATGGT-GGTCTCAACCTCGAAATGTAAATGCATGCTCTCGTTGTCATCCTACACTGATTCGTAAATGCAGCAGAC
AAGTTCAGAATCAGCGCTTTCGGCTGATTCGATTATTCTTGACTTCCAGTGTCAGT---TAGAACTCAGAACAGCGATA-
-------------TTCAAACTCTTCTAGCAAGTTGACCAATTTACAATTCCGGCAACCCCCAGAACTGAATCTTTAATAT
AATCTTGGTCTCTAAGCAAGGT-----ACATGCAGCCCCCTTCCCCCCAGGTTTGCAGGGTCAATCATGCG-AAACCCGT
AGTTTTCATTGTGCTTTGGAGTAACACGGACACC--TATGCGGCTTCATGTTCTACGAGACAAGATATAGAGCAAAATGA
CAGGCACCTTCGATTCCAGGGCACGCGACTGCTGCCTTGATCCGAACAAAACAATGACCGTCCATTTGAATCTTAACTTT
TTTTTTGTGCACTGATCTGCTGAGAATCTGGGAGCTCGCTGAATCGTAGGTAGTA--ACTGCATTGTGTTCAGTTTCTAT
TGGCTGCTGGAGAGAATAAGAGAAGAAAGTGTCAGTTGATTTCGTTTCGAACG---TATGGATGAAACACGGCAGAAAAT
GGTA-----------------------------------
>chr5D_439
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--------------------------------------TATAAAAATATGCTCAGTGTAGGTTCA--CACAAGTTGCAAA
ACAAAATTGGATAGAAAGACAACCGAAGAAGCCGCAAAAGTCAGCCCATGAACCATGATCTGCATTGACCATAGCGGAAC
TGACAAGCAAGCAGAAATCAACAGCAAAAACATGCAGGAAAGAGGGCACCAAATCAAAACCAAACCAAACGAGCATTTTA
AAAATCGCCCAACGCAGCATTGACCTCGATCCATGCCATTGCCCGGCCGCATCCAATTTTAATACAGCTCTCCCGCACTA
CCCGTAC------CCGTACATGGTATTCACTCCGCTAGTCGTC---TCCCCGTCTCGCTCCCCGCAACATGCAAAGCGTT
GACGTCCCCCTCGCAGCAACCTCCGTCCGCTGGATCCGATCTCCTTC--------CCTTCGAGCCCAAACAAAAACCCCA
CCAGACGATCAAGAATCGCTCTCCCCTCTCCACCACCACCATTCCACCAACGACTCGTAACCTTCACCTCTCCTAGGTCC
T--AGCTAGCTAACCTCCGCTCGCTTCGGTCCGGCAGCGACGAACGCGACGTCGGGATGAACGCCGGTGCCCCGCCGGCG
CCCGGCCGGTTCACCCCGGGCGACGGCACCTCCGTCGGCATGTTCAGCTCCGACCGCATCGGCGGCTTCGGCTACGGTGT
CGGCGTCTCCGTCGGCATCCTCCTCCTCATCACCACCATCACGCTCGCCTCCTACTTCTGCACCCGCGCGCCCCCGCCCG
GCCCGGAGGCCGCCGCCGACGCGGAAGGGACGGCGCGGCGAAGGCGGCGCGCGCGGCGCCGCGAGGGCGGCGGCGACAAC
GATGGCGGCGGGGGAGCCGGCGACGACGTCGACGTGGAGCTCGGCATCGACGAGGCCACGCTCAAGGGGTACCCGGAGGT
GGTTTACGGCGAGGCGCGGAGGAACAAGAACAGGAAGCTGGGCACCACCTGCACCTGCTGCTCTGTGTGCCTCGACAACT
ACGGCGACGGCGACGTGCTCCGGATGCTGCCGGACTGCGGCCACCTGTTCCACCGGGAGTGCGTCGACCCCTGGCTCCGG
AAGCACCCGACCTGCCCCGTCTGCCGGACCTCGCCGCTGCCCAGCCCCTTGCCCACGCCGCTCGCCGAGGTCACGCCGCT
GGCCATGACGAGGCTGTCATCCTGACACCACACCGAGGTTCTTGCTTGGTTTTAATGTTCTTAC------------CCTT
TTTTTCTTAATTTGGAAAACTGGTATCGGTGGAAAAAAAATGGTCAGGTTAGGAATTA----GAAGCTTCTTTTGTTGGT
CTGGGTATAAATTTGGTTTAAGATTAGTTCACTTCTTCTGATGGAAATGCAAGTCTGCCTGGCATTCTGTCCTG------
-ATACAATTAGTTGAGAATTCGCCGATCAGAAGTTCAGAACATGTGCTCAAAGAAGGATGATTACTTGACATTAGCAAGC
TGGGTGTAGTAGAATTGTAGATCTCTGTTCGGCAAACGATCAATGTCACAATGTAGAGTAGGTTGT-TTGAATATACTGA
ATCAGATGGT-GGGTTTCGGCTCGAAATGTAAATGCATGCTCTCATTGTCATACT---CTGATTCGTAAATGCAGCACAC
AAGTTCAGAATCAGCGCTTTCGGCGGATTCGA-TATTCTTGACTTCCAGTGTCAGCTACTAGAACTTCGAACAGCGATAG
TTCGGTATTCAATTTCAAACTCCTCCAGCAAGTTGATCAATTTACAATTCCGGCAACCCCCCAAACTGAATCTTTAATAT
AATCTTGGACTCTAAGCAAGGT-----ACATGCAGCCCCCTTCCCCCCAGGTTTGCAGGGTCAATCATGCAAAAACCCGT
AGTTTTCATTGTGCTTTGGAGTGACACGGACACCCATATGCGGCTTCATGTTCTACGAGACAAGATATAGAGCAAAATGA
CAGGCACCTTCGATTCCAGGGCACGCGACTTCTGCCTTGATCCGAACAAAACAATGACCGTCCACGTGAAT-TTTAACTT
ATCTTTGTGCACCGATCTGCTGAGGACCTGGGAGCTCGTTGAATCGTAGGTACTAGTACTGCATTGTGTTCAGTTTTTAT
CGGCTGCTGGAGAGAATCAGAGAAGAAAATGCCAGCTGATTTCATTTCAAACG---TATGGATGAAACACGGCAGAAAAA
TGGTAGAGTATAGAGGAGGTACTACTGTATCAGGATTCG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS------------------S------------------------------------------
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----------------------------------------------------SS--------------------------
----------S----------------------------S------S---------------------------------
-------SSSSSS---------------S----S----------------------------------------------
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--S-----------------------------------------------------S-----------------------
------------S----------------------S-------S------------------------------------
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----------------------S-----------S---------------------------------------------
---------------S----------------------------------------------------------------
-----------------------S--------------------------------------------------------
----------------------S---------------------------------------------------------
-----------------------------------------------------------S-----S--------------
---------------------------------------------------------------------SS---------
-----------------------------------------------------------S-----------------S--
-------------S-----------------------------------------------------------------S
-----------------S-------------------------------------------------------------S
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--------S-S---------------------------S---------S-----------------S-------------
--------------------S---S----------------S-----------------------S--------------
--------------------S-----------------------------------------------------------
----------------------SSSSS-----------------------------------------------------
---------------------------S--------S-------------------------------------------
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-------------------------S------S-----------------S---------------S------------S
---------------------------------S-------S-----------SSS------------------------
----SSSSS--------------S---------------
>forward_728
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--------------------------------------------------------------------TACAGCTCTCCC
GCACTACT------------------------------------------------------------------------
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>reverse_2513
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--------------------------------TGCTCGTTGAATCGTAGGCA----------------------------
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