Multiple sequence alignment - TraesCS5A01G419900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G419900 chr5A 100.000 2698 0 0 1 2698 606810001 606812698 0.000000e+00 4983.0
1 TraesCS5A01G419900 chr5A 94.637 317 17 0 2382 2698 605095525 605095209 2.410000e-135 492.0
2 TraesCS5A01G419900 chr5A 79.437 462 60 12 1057 1485 606531663 606532122 7.310000e-76 294.0
3 TraesCS5A01G419900 chr5A 75.718 383 64 13 860 1228 606786679 606787046 5.980000e-37 165.0
4 TraesCS5A01G419900 chr5B 91.802 1537 100 18 859 2375 597083576 597085106 0.000000e+00 2117.0
5 TraesCS5A01G419900 chr5B 80.866 439 52 13 1079 1486 596918539 596918976 1.560000e-82 316.0
6 TraesCS5A01G419900 chr5B 81.343 402 57 13 1093 1490 597102336 597102723 7.250000e-81 311.0
7 TraesCS5A01G419900 chr5B 81.690 355 56 4 39 385 468869640 468869993 1.220000e-73 287.0
8 TraesCS5A01G419900 chr5B 81.534 352 59 1 40 385 682377437 682377086 4.400000e-73 285.0
9 TraesCS5A01G419900 chr5B 82.044 362 31 15 447 776 597083115 597083474 7.360000e-71 278.0
10 TraesCS5A01G419900 chr5B 76.513 413 48 27 859 1233 597079973 597080374 2.130000e-41 180.0
11 TraesCS5A01G419900 chr5B 85.507 69 10 0 1357 1425 597080534 597080602 3.730000e-09 73.1
12 TraesCS5A01G419900 chr5D 91.558 1528 91 16 859 2379 486033685 486035181 0.000000e+00 2073.0
13 TraesCS5A01G419900 chr5D 94.603 315 17 0 2384 2698 367422298 367421984 3.120000e-134 488.0
14 TraesCS5A01G419900 chr5D 93.016 315 19 1 2384 2698 15558217 15557906 8.800000e-125 457.0
15 TraesCS5A01G419900 chr5D 89.086 339 30 6 447 780 486033263 486033599 5.370000e-112 414.0
16 TraesCS5A01G419900 chr5D 79.535 430 50 15 1079 1483 485375463 485375879 3.420000e-69 272.0
17 TraesCS5A01G419900 chr5D 81.231 325 53 8 64 385 407984965 407985284 3.450000e-64 255.0
18 TraesCS5A01G419900 chr5D 79.365 315 39 15 899 1200 486015598 486015899 5.890000e-47 198.0
19 TraesCS5A01G419900 chr5D 83.333 180 21 4 1060 1233 486031105 486031281 1.000000e-34 158.0
20 TraesCS5A01G419900 chr5D 88.889 54 6 0 1357 1410 486016098 486016151 1.730000e-07 67.6
21 TraesCS5A01G419900 chr4D 95.425 306 14 0 2393 2698 474715741 474715436 3.120000e-134 488.0
22 TraesCS5A01G419900 chr3D 94.771 306 16 0 2393 2698 588505625 588505320 6.760000e-131 477.0
23 TraesCS5A01G419900 chr3D 93.968 315 16 3 2384 2698 274345123 274344812 8.740000e-130 473.0
24 TraesCS5A01G419900 chr3D 93.396 318 21 0 2381 2698 45955277 45955594 3.140000e-129 472.0
25 TraesCS5A01G419900 chr3D 94.389 303 16 1 2395 2696 18422020 18421718 5.260000e-127 464.0
26 TraesCS5A01G419900 chr3A 92.429 317 24 0 2381 2697 12919437 12919121 1.140000e-123 453.0
27 TraesCS5A01G419900 chr2B 86.378 323 42 2 64 385 718636164 718636485 4.270000e-93 351.0
28 TraesCS5A01G419900 chr2B 82.769 325 55 1 62 385 13039794 13039470 3.400000e-74 289.0
29 TraesCS5A01G419900 chr7A 83.129 326 53 2 62 385 566983933 566983608 2.030000e-76 296.0
30 TraesCS5A01G419900 chr4B 83.129 326 52 3 62 385 97054521 97054845 7.310000e-76 294.0
31 TraesCS5A01G419900 chr4B 82.445 319 54 2 68 385 382782534 382782217 7.360000e-71 278.0
32 TraesCS5A01G419900 chr6A 82.769 325 55 1 62 385 616797397 616797073 3.400000e-74 289.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G419900 chr5A 606810001 606812698 2697 False 4983.000000 4983 100.000000 1 2698 1 chr5A.!!$F3 2697
1 TraesCS5A01G419900 chr5B 597079973 597085106 5133 False 662.025000 2117 83.966500 447 2375 4 chr5B.!!$F4 1928
2 TraesCS5A01G419900 chr5D 486031105 486035181 4076 False 881.666667 2073 87.992333 447 2379 3 chr5D.!!$F4 1932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.036022 GCAGAAGAGAGTTGCCTGGT 59.964 55.0 0.0 0.0 31.79 4.00 F
288 289 0.040958 GCGACTCCAACTTTGCTGTG 60.041 55.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1021 4291 1.004745 ACTGGGTAGTGATTGCAAGGG 59.995 52.381 4.94 0.0 35.34 3.95 R
2168 5453 1.598882 TTGTGCTTGATACGGCAACA 58.401 45.000 0.00 0.0 40.26 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.970987 TCATTGGGGAGATCCATACGA 58.029 47.619 0.47 0.00 36.58 3.43
23 24 2.168458 TGGGGAGATCCATACGAACA 57.832 50.000 0.47 0.00 37.91 3.18
25 26 2.169769 TGGGGAGATCCATACGAACAAC 59.830 50.000 0.47 0.00 37.91 3.32
26 27 2.169769 GGGGAGATCCATACGAACAACA 59.830 50.000 0.47 0.00 37.91 3.33
27 28 3.370103 GGGGAGATCCATACGAACAACAA 60.370 47.826 0.47 0.00 37.91 2.83
28 29 4.451900 GGGAGATCCATACGAACAACAAT 58.548 43.478 0.47 0.00 37.91 2.71
29 30 4.511826 GGGAGATCCATACGAACAACAATC 59.488 45.833 0.47 0.00 37.91 2.67
30 31 4.209288 GGAGATCCATACGAACAACAATCG 59.791 45.833 0.00 0.00 39.97 3.34
32 33 2.623535 TCCATACGAACAACAATCGGG 58.376 47.619 0.00 0.00 44.32 5.14
34 35 2.006888 CATACGAACAACAATCGGGCT 58.993 47.619 0.00 0.00 44.32 5.19
36 37 1.435577 ACGAACAACAATCGGGCTAC 58.564 50.000 0.00 0.00 44.32 3.58
37 38 1.270412 ACGAACAACAATCGGGCTACA 60.270 47.619 0.00 0.00 44.32 2.74
39 40 2.418628 CGAACAACAATCGGGCTACAAT 59.581 45.455 0.00 0.00 36.68 2.71
41 42 4.272504 CGAACAACAATCGGGCTACAATAT 59.727 41.667 0.00 0.00 36.68 1.28
42 43 5.220777 CGAACAACAATCGGGCTACAATATT 60.221 40.000 0.00 0.00 36.68 1.28
43 44 6.018588 CGAACAACAATCGGGCTACAATATTA 60.019 38.462 0.00 0.00 36.68 0.98
44 45 7.307751 CGAACAACAATCGGGCTACAATATTAT 60.308 37.037 0.00 0.00 36.68 1.28
46 47 8.911918 ACAACAATCGGGCTACAATATTATTA 57.088 30.769 0.00 0.00 0.00 0.98
68 69 4.712122 TTATTGAAACGGAGGATTTGCC 57.288 40.909 0.00 0.00 0.00 4.52
85 86 9.018582 AGGATTTGCCTCATCTATTAATTAAGC 57.981 33.333 3.94 0.05 46.97 3.09
87 88 9.837525 GATTTGCCTCATCTATTAATTAAGCAG 57.162 33.333 3.94 4.02 0.00 4.24
88 89 8.978874 TTTGCCTCATCTATTAATTAAGCAGA 57.021 30.769 12.33 12.33 0.00 4.26
89 90 8.978874 TTGCCTCATCTATTAATTAAGCAGAA 57.021 30.769 13.43 2.08 0.00 3.02
90 91 8.613060 TGCCTCATCTATTAATTAAGCAGAAG 57.387 34.615 13.43 10.54 0.00 2.85
91 92 8.432013 TGCCTCATCTATTAATTAAGCAGAAGA 58.568 33.333 13.43 13.18 0.00 2.87
92 93 8.934825 GCCTCATCTATTAATTAAGCAGAAGAG 58.065 37.037 22.81 22.81 32.10 2.85
98 99 9.319143 TCTATTAATTAAGCAGAAGAGAGTTGC 57.681 33.333 3.94 0.00 38.09 4.17
99 100 6.743575 TTAATTAAGCAGAAGAGAGTTGCC 57.256 37.500 0.00 0.00 38.58 4.52
100 101 4.566426 ATTAAGCAGAAGAGAGTTGCCT 57.434 40.909 0.00 0.00 38.58 4.75
101 102 2.181954 AAGCAGAAGAGAGTTGCCTG 57.818 50.000 0.00 0.00 38.58 4.85
102 103 0.324285 AGCAGAAGAGAGTTGCCTGG 59.676 55.000 0.00 0.00 38.58 4.45
103 104 0.036022 GCAGAAGAGAGTTGCCTGGT 59.964 55.000 0.00 0.00 31.79 4.00
107 108 4.583871 CAGAAGAGAGTTGCCTGGTTAAT 58.416 43.478 0.00 0.00 0.00 1.40
109 110 6.173339 CAGAAGAGAGTTGCCTGGTTAATTA 58.827 40.000 0.00 0.00 0.00 1.40
110 111 6.655003 CAGAAGAGAGTTGCCTGGTTAATTAA 59.345 38.462 0.00 0.00 0.00 1.40
112 113 4.935808 AGAGAGTTGCCTGGTTAATTAACG 59.064 41.667 19.48 9.21 37.07 3.18
113 114 4.901868 AGAGTTGCCTGGTTAATTAACGA 58.098 39.130 19.48 15.71 37.07 3.85
114 115 5.310451 AGAGTTGCCTGGTTAATTAACGAA 58.690 37.500 19.48 11.04 37.07 3.85
115 116 5.766174 AGAGTTGCCTGGTTAATTAACGAAA 59.234 36.000 19.48 6.64 37.07 3.46
116 117 6.263617 AGAGTTGCCTGGTTAATTAACGAAAA 59.736 34.615 19.48 9.48 37.07 2.29
118 119 6.698329 AGTTGCCTGGTTAATTAACGAAAAAC 59.302 34.615 19.48 17.61 37.07 2.43
119 120 5.530712 TGCCTGGTTAATTAACGAAAAACC 58.469 37.500 19.48 9.22 40.03 3.27
121 122 5.155643 CCTGGTTAATTAACGAAAAACCGG 58.844 41.667 19.48 12.56 43.33 5.28
122 123 5.118642 TGGTTAATTAACGAAAAACCGGG 57.881 39.130 19.48 0.00 42.03 5.73
124 125 2.334971 AATTAACGAAAAACCGGGCG 57.665 45.000 6.32 3.77 0.00 6.13
126 127 1.303309 TTAACGAAAAACCGGGCGAA 58.697 45.000 6.32 0.00 0.00 4.70
127 128 1.303309 TAACGAAAAACCGGGCGAAA 58.697 45.000 6.32 0.00 0.00 3.46
128 129 0.455005 AACGAAAAACCGGGCGAAAA 59.545 45.000 6.32 0.00 0.00 2.29
129 130 0.248580 ACGAAAAACCGGGCGAAAAC 60.249 50.000 6.32 0.00 0.00 2.43
136 137 2.968156 CGGGCGAAAACCGTCACA 60.968 61.111 0.00 0.00 46.37 3.58
137 138 2.535788 CGGGCGAAAACCGTCACAA 61.536 57.895 0.00 0.00 46.37 3.33
138 139 1.728672 GGGCGAAAACCGTCACAAA 59.271 52.632 0.00 0.00 46.37 2.83
140 141 0.593008 GGCGAAAACCGTCACAAACC 60.593 55.000 0.00 0.00 43.50 3.27
141 142 0.926628 GCGAAAACCGTCACAAACCG 60.927 55.000 0.00 0.00 41.15 4.44
143 144 0.593008 GAAAACCGTCACAAACCGCC 60.593 55.000 0.00 0.00 0.00 6.13
144 145 2.325666 AAAACCGTCACAAACCGCCG 62.326 55.000 0.00 0.00 0.00 6.46
145 146 3.736732 AACCGTCACAAACCGCCGA 62.737 57.895 0.00 0.00 0.00 5.54
146 147 3.411351 CCGTCACAAACCGCCGAG 61.411 66.667 0.00 0.00 0.00 4.63
147 148 2.660552 CGTCACAAACCGCCGAGT 60.661 61.111 0.00 0.00 0.00 4.18
148 149 2.935955 GTCACAAACCGCCGAGTG 59.064 61.111 0.00 0.00 0.00 3.51
149 150 2.280524 TCACAAACCGCCGAGTGG 60.281 61.111 2.39 2.39 39.41 4.00
165 166 1.299648 TGGCACACACAGATAGCCC 59.700 57.895 0.00 0.00 44.60 5.19
167 168 1.026718 GGCACACACAGATAGCCCAC 61.027 60.000 0.00 0.00 39.42 4.61
168 169 0.321564 GCACACACAGATAGCCCACA 60.322 55.000 0.00 0.00 0.00 4.17
169 170 1.442769 CACACACAGATAGCCCACAC 58.557 55.000 0.00 0.00 0.00 3.82
170 171 0.324943 ACACACAGATAGCCCACACC 59.675 55.000 0.00 0.00 0.00 4.16
172 173 1.153369 CACAGATAGCCCACACCCG 60.153 63.158 0.00 0.00 0.00 5.28
173 174 2.203070 CAGATAGCCCACACCCGC 60.203 66.667 0.00 0.00 0.00 6.13
174 175 3.480133 AGATAGCCCACACCCGCC 61.480 66.667 0.00 0.00 0.00 6.13
175 176 3.480133 GATAGCCCACACCCGCCT 61.480 66.667 0.00 0.00 0.00 5.52
176 177 3.015145 ATAGCCCACACCCGCCTT 61.015 61.111 0.00 0.00 0.00 4.35
177 178 2.942648 GATAGCCCACACCCGCCTTC 62.943 65.000 0.00 0.00 0.00 3.46
180 181 4.263572 CCCACACCCGCCTTCACA 62.264 66.667 0.00 0.00 0.00 3.58
181 182 2.669569 CCACACCCGCCTTCACAG 60.670 66.667 0.00 0.00 0.00 3.66
182 183 2.425592 CACACCCGCCTTCACAGA 59.574 61.111 0.00 0.00 0.00 3.41
183 184 1.669115 CACACCCGCCTTCACAGAG 60.669 63.158 0.00 0.00 0.00 3.35
185 186 1.079543 CACCCGCCTTCACAGAGAG 60.080 63.158 0.00 0.00 0.00 3.20
186 187 1.534235 ACCCGCCTTCACAGAGAGT 60.534 57.895 0.00 0.00 0.00 3.24
195 196 2.746997 CACAGAGAGTGCCACATCG 58.253 57.895 0.00 0.00 42.15 3.84
196 197 0.244721 CACAGAGAGTGCCACATCGA 59.755 55.000 0.00 0.00 42.15 3.59
201 202 0.743688 AGAGTGCCACATCGAGCTAG 59.256 55.000 0.00 0.00 0.00 3.42
202 203 0.873743 GAGTGCCACATCGAGCTAGC 60.874 60.000 6.62 6.62 0.00 3.42
203 204 1.153568 GTGCCACATCGAGCTAGCA 60.154 57.895 18.83 0.00 0.00 3.49
204 205 1.153568 TGCCACATCGAGCTAGCAC 60.154 57.895 18.83 10.18 0.00 4.40
206 207 2.233654 CCACATCGAGCTAGCACGC 61.234 63.158 26.83 10.52 0.00 5.34
207 208 1.517039 CACATCGAGCTAGCACGCA 60.517 57.895 26.83 16.95 0.00 5.24
208 209 1.078201 CACATCGAGCTAGCACGCAA 61.078 55.000 26.83 13.37 0.00 4.85
210 211 1.880340 ATCGAGCTAGCACGCAAGC 60.880 57.895 26.83 0.00 45.62 4.01
211 212 3.906649 CGAGCTAGCACGCAAGCG 61.907 66.667 21.22 13.50 43.63 4.68
222 223 1.270968 CGCAAGCGTCATCGTCATC 59.729 57.895 6.25 0.00 39.49 2.92
226 227 1.995484 CAAGCGTCATCGTCATCACTT 59.005 47.619 0.00 0.00 39.49 3.16
227 228 1.914634 AGCGTCATCGTCATCACTTC 58.085 50.000 0.00 0.00 39.49 3.01
228 229 1.474478 AGCGTCATCGTCATCACTTCT 59.526 47.619 0.00 0.00 39.49 2.85
229 230 1.849219 GCGTCATCGTCATCACTTCTC 59.151 52.381 0.00 0.00 39.49 2.87
230 231 2.455032 CGTCATCGTCATCACTTCTCC 58.545 52.381 0.00 0.00 0.00 3.71
231 232 2.796383 CGTCATCGTCATCACTTCTCCC 60.796 54.545 0.00 0.00 0.00 4.30
234 235 1.639722 TCGTCATCACTTCTCCCCAA 58.360 50.000 0.00 0.00 0.00 4.12
235 236 1.550524 TCGTCATCACTTCTCCCCAAG 59.449 52.381 0.00 0.00 0.00 3.61
236 237 1.743996 GTCATCACTTCTCCCCAAGC 58.256 55.000 0.00 0.00 0.00 4.01
237 238 1.003580 GTCATCACTTCTCCCCAAGCA 59.996 52.381 0.00 0.00 0.00 3.91
238 239 1.280133 TCATCACTTCTCCCCAAGCAG 59.720 52.381 0.00 0.00 0.00 4.24
241 242 2.437359 CTTCTCCCCAAGCAGGCG 60.437 66.667 0.00 0.00 35.39 5.52
242 243 3.249189 TTCTCCCCAAGCAGGCGT 61.249 61.111 0.00 0.00 35.39 5.68
243 244 3.254024 TTCTCCCCAAGCAGGCGTC 62.254 63.158 0.00 0.00 35.39 5.19
244 245 4.020617 CTCCCCAAGCAGGCGTCA 62.021 66.667 0.00 0.00 35.39 4.35
245 246 3.329889 TCCCCAAGCAGGCGTCAT 61.330 61.111 0.00 0.00 35.39 3.06
246 247 2.361610 CCCCAAGCAGGCGTCATT 60.362 61.111 0.00 0.00 35.39 2.57
247 248 2.703798 CCCCAAGCAGGCGTCATTG 61.704 63.158 0.00 0.00 35.39 2.82
248 249 2.180017 CCAAGCAGGCGTCATTGC 59.820 61.111 0.00 0.00 40.57 3.56
256 257 4.876701 GCGTCATTGCCATCCCTA 57.123 55.556 0.00 0.00 0.00 3.53
258 259 1.609208 GCGTCATTGCCATCCCTAAT 58.391 50.000 0.00 0.00 0.00 1.73
261 262 3.557054 GCGTCATTGCCATCCCTAATCTA 60.557 47.826 0.00 0.00 0.00 1.98
262 263 4.836825 CGTCATTGCCATCCCTAATCTAT 58.163 43.478 0.00 0.00 0.00 1.98
263 264 4.872691 CGTCATTGCCATCCCTAATCTATC 59.127 45.833 0.00 0.00 0.00 2.08
264 265 5.569428 CGTCATTGCCATCCCTAATCTATCA 60.569 44.000 0.00 0.00 0.00 2.15
266 267 5.786975 TCATTGCCATCCCTAATCTATCAGA 59.213 40.000 0.00 0.00 0.00 3.27
267 268 6.273026 TCATTGCCATCCCTAATCTATCAGAA 59.727 38.462 0.00 0.00 0.00 3.02
268 269 6.514012 TTGCCATCCCTAATCTATCAGAAA 57.486 37.500 0.00 0.00 0.00 2.52
270 271 4.940654 GCCATCCCTAATCTATCAGAAAGC 59.059 45.833 0.00 0.00 0.00 3.51
273 274 5.455056 TCCCTAATCTATCAGAAAGCGAC 57.545 43.478 0.00 0.00 0.00 5.19
274 275 5.141182 TCCCTAATCTATCAGAAAGCGACT 58.859 41.667 0.00 0.00 0.00 4.18
275 276 5.241949 TCCCTAATCTATCAGAAAGCGACTC 59.758 44.000 0.00 0.00 0.00 3.36
276 277 5.465935 CCTAATCTATCAGAAAGCGACTCC 58.534 45.833 0.00 0.00 0.00 3.85
277 278 5.010112 CCTAATCTATCAGAAAGCGACTCCA 59.990 44.000 0.00 0.00 0.00 3.86
278 279 5.344743 AATCTATCAGAAAGCGACTCCAA 57.655 39.130 0.00 0.00 0.00 3.53
280 281 3.764434 TCTATCAGAAAGCGACTCCAACT 59.236 43.478 0.00 0.00 0.00 3.16
282 283 3.194005 TCAGAAAGCGACTCCAACTTT 57.806 42.857 0.00 0.00 36.37 2.66
283 284 2.872245 TCAGAAAGCGACTCCAACTTTG 59.128 45.455 0.00 0.00 33.91 2.77
284 285 1.604278 AGAAAGCGACTCCAACTTTGC 59.396 47.619 0.00 0.00 33.91 3.68
285 286 1.604278 GAAAGCGACTCCAACTTTGCT 59.396 47.619 0.00 0.00 33.91 3.91
287 288 0.179045 AGCGACTCCAACTTTGCTGT 60.179 50.000 0.00 0.00 30.80 4.40
288 289 0.040958 GCGACTCCAACTTTGCTGTG 60.041 55.000 0.00 0.00 0.00 3.66
289 290 0.588252 CGACTCCAACTTTGCTGTGG 59.412 55.000 0.00 0.00 0.00 4.17
290 291 1.810031 CGACTCCAACTTTGCTGTGGA 60.810 52.381 0.00 0.00 0.00 4.02
291 292 1.604278 GACTCCAACTTTGCTGTGGAC 59.396 52.381 0.00 0.00 0.00 4.02
292 293 0.588252 CTCCAACTTTGCTGTGGACG 59.412 55.000 0.00 0.00 0.00 4.79
293 294 0.179234 TCCAACTTTGCTGTGGACGA 59.821 50.000 0.00 0.00 0.00 4.20
294 295 1.021202 CCAACTTTGCTGTGGACGAA 58.979 50.000 0.00 0.00 0.00 3.85
296 297 1.400142 CAACTTTGCTGTGGACGAACA 59.600 47.619 0.00 0.00 0.00 3.18
297 298 1.014352 ACTTTGCTGTGGACGAACAC 58.986 50.000 7.18 7.18 41.68 3.32
299 300 1.433053 TTTGCTGTGGACGAACACCG 61.433 55.000 10.72 6.56 40.62 4.94
305 306 2.429739 GGACGAACACCGACCGAC 60.430 66.667 0.00 0.00 42.51 4.79
306 307 2.429739 GACGAACACCGACCGACC 60.430 66.667 0.00 0.00 41.76 4.79
308 309 3.677648 CGAACACCGACCGACCCT 61.678 66.667 0.00 0.00 41.76 4.34
309 310 2.260743 GAACACCGACCGACCCTC 59.739 66.667 0.00 0.00 0.00 4.30
310 311 2.522436 AACACCGACCGACCCTCA 60.522 61.111 0.00 0.00 0.00 3.86
311 312 2.760387 GAACACCGACCGACCCTCAC 62.760 65.000 0.00 0.00 0.00 3.51
312 313 4.065281 CACCGACCGACCCTCACC 62.065 72.222 0.00 0.00 0.00 4.02
328 329 4.979204 CCGCGAAGGTTGTGTAGA 57.021 55.556 8.23 0.00 34.51 2.59
329 330 3.204505 CCGCGAAGGTTGTGTAGAA 57.795 52.632 8.23 0.00 34.51 2.10
345 346 5.290493 TGTAGAAACACATGAAGACCTGT 57.710 39.130 0.00 0.00 0.00 4.00
346 347 5.056480 TGTAGAAACACATGAAGACCTGTG 58.944 41.667 0.00 0.00 44.26 3.66
347 348 2.880890 AGAAACACATGAAGACCTGTGC 59.119 45.455 0.00 0.00 43.13 4.57
348 349 1.609208 AACACATGAAGACCTGTGCC 58.391 50.000 0.00 0.00 43.13 5.01
349 350 0.473755 ACACATGAAGACCTGTGCCA 59.526 50.000 0.00 0.00 43.13 4.92
350 351 1.162698 CACATGAAGACCTGTGCCAG 58.837 55.000 0.00 0.00 36.30 4.85
351 352 1.059098 ACATGAAGACCTGTGCCAGA 58.941 50.000 0.00 0.00 32.44 3.86
352 353 1.421268 ACATGAAGACCTGTGCCAGAA 59.579 47.619 0.00 0.00 32.44 3.02
353 354 2.158623 ACATGAAGACCTGTGCCAGAAA 60.159 45.455 0.00 0.00 32.44 2.52
354 355 2.957402 TGAAGACCTGTGCCAGAAAT 57.043 45.000 4.00 0.00 32.44 2.17
356 357 2.106338 TGAAGACCTGTGCCAGAAATCA 59.894 45.455 4.00 1.55 32.44 2.57
357 358 2.486472 AGACCTGTGCCAGAAATCAG 57.514 50.000 4.00 0.00 32.44 2.90
358 359 0.807496 GACCTGTGCCAGAAATCAGC 59.193 55.000 4.00 0.00 32.44 4.26
360 361 0.609957 CCTGTGCCAGAAATCAGCCA 60.610 55.000 4.00 0.00 32.44 4.75
361 362 0.524862 CTGTGCCAGAAATCAGCCAC 59.475 55.000 0.00 0.00 32.44 5.01
363 364 1.304381 TGCCAGAAATCAGCCACCC 60.304 57.895 0.00 0.00 0.00 4.61
364 365 1.304381 GCCAGAAATCAGCCACCCA 60.304 57.895 0.00 0.00 0.00 4.51
366 367 1.308069 CCAGAAATCAGCCACCCACG 61.308 60.000 0.00 0.00 0.00 4.94
367 368 0.606401 CAGAAATCAGCCACCCACGT 60.606 55.000 0.00 0.00 0.00 4.49
369 370 1.635663 GAAATCAGCCACCCACGTCG 61.636 60.000 0.00 0.00 0.00 5.12
370 371 2.107041 AAATCAGCCACCCACGTCGA 62.107 55.000 0.00 0.00 0.00 4.20
371 372 2.507110 AATCAGCCACCCACGTCGAG 62.507 60.000 0.00 0.00 0.00 4.04
372 373 4.742201 CAGCCACCCACGTCGAGG 62.742 72.222 3.03 3.03 0.00 4.63
396 397 2.240500 GCAGCTCAATCGGGCTACG 61.241 63.158 0.00 0.00 46.11 3.51
409 410 3.637998 GGGCTACGATATTCGACTGAA 57.362 47.619 3.62 0.00 43.74 3.02
412 413 3.975670 GGCTACGATATTCGACTGAACAG 59.024 47.826 3.62 0.00 43.74 3.16
413 414 3.975670 GCTACGATATTCGACTGAACAGG 59.024 47.826 3.62 0.00 43.74 4.00
414 415 4.261072 GCTACGATATTCGACTGAACAGGA 60.261 45.833 3.62 0.00 43.74 3.86
416 417 4.421948 ACGATATTCGACTGAACAGGAAC 58.578 43.478 3.62 0.00 43.74 3.62
417 418 3.797256 CGATATTCGACTGAACAGGAACC 59.203 47.826 6.76 0.00 43.74 3.62
418 419 4.440250 CGATATTCGACTGAACAGGAACCT 60.440 45.833 6.76 0.00 43.74 3.50
419 420 6.463536 CGATATTCGACTGAACAGGAACCTG 61.464 48.000 17.94 17.94 43.74 4.00
428 429 2.926250 AGGAACCTGCCTGCACAA 59.074 55.556 0.00 0.00 36.76 3.33
429 430 1.462035 AGGAACCTGCCTGCACAAT 59.538 52.632 0.00 0.00 36.76 2.71
431 432 1.285962 AGGAACCTGCCTGCACAATAT 59.714 47.619 0.00 0.00 36.76 1.28
432 433 2.509548 AGGAACCTGCCTGCACAATATA 59.490 45.455 0.00 0.00 36.76 0.86
433 434 2.618709 GGAACCTGCCTGCACAATATAC 59.381 50.000 0.00 0.00 0.00 1.47
434 435 2.348411 ACCTGCCTGCACAATATACC 57.652 50.000 0.00 0.00 0.00 2.73
437 438 2.105477 CCTGCCTGCACAATATACCTCT 59.895 50.000 0.00 0.00 0.00 3.69
438 439 3.324846 CCTGCCTGCACAATATACCTCTA 59.675 47.826 0.00 0.00 0.00 2.43
439 440 4.310769 CTGCCTGCACAATATACCTCTAC 58.689 47.826 0.00 0.00 0.00 2.59
440 441 3.709141 TGCCTGCACAATATACCTCTACA 59.291 43.478 0.00 0.00 0.00 2.74
441 442 4.163268 TGCCTGCACAATATACCTCTACAA 59.837 41.667 0.00 0.00 0.00 2.41
442 443 5.163205 TGCCTGCACAATATACCTCTACAAT 60.163 40.000 0.00 0.00 0.00 2.71
443 444 6.042666 TGCCTGCACAATATACCTCTACAATA 59.957 38.462 0.00 0.00 0.00 1.90
444 445 6.369065 GCCTGCACAATATACCTCTACAATAC 59.631 42.308 0.00 0.00 0.00 1.89
445 446 7.671302 CCTGCACAATATACCTCTACAATACT 58.329 38.462 0.00 0.00 0.00 2.12
447 448 9.547753 CTGCACAATATACCTCTACAATACTTT 57.452 33.333 0.00 0.00 0.00 2.66
531 3720 9.827411 GGACAAATCTAAAACTTCAGTTATGAC 57.173 33.333 0.00 0.00 37.25 3.06
578 3768 8.008513 TCACCCTGTTAATTCTAGCTAACTAG 57.991 38.462 0.00 0.00 46.30 2.57
604 3794 6.032377 TGAGGCGATCAAATCCTAATGGATG 61.032 44.000 0.00 0.00 42.47 3.51
741 3956 0.883833 AGCAGCAAATTAGCAACGCT 59.116 45.000 0.00 0.00 43.41 5.07
743 3958 1.900237 CAGCAAATTAGCAACGCTCC 58.100 50.000 0.00 0.00 40.44 4.70
746 3961 0.802494 CAAATTAGCAACGCTCCGGT 59.198 50.000 0.00 0.00 40.44 5.28
750 3965 2.089887 TTAGCAACGCTCCGGTCACA 62.090 55.000 0.00 0.00 40.44 3.58
751 3966 2.486636 TAGCAACGCTCCGGTCACAG 62.487 60.000 0.00 0.00 40.44 3.66
767 3982 0.827507 ACAGGCTGACGGGCAAAAAT 60.828 50.000 23.66 0.00 43.56 1.82
770 3985 1.750778 AGGCTGACGGGCAAAAATATG 59.249 47.619 10.89 0.00 43.56 1.78
771 3986 1.559831 GCTGACGGGCAAAAATATGC 58.440 50.000 0.00 0.00 45.67 3.14
777 3992 4.085302 GCAAAAATATGCGGCGCA 57.915 50.000 38.09 38.09 44.86 6.09
792 4007 4.756458 GCAGGCTGCAGAGACGCT 62.756 66.667 33.33 0.00 44.26 5.07
803 4018 2.758736 AGAGACGCTGAAAAGCTGAT 57.241 45.000 0.00 0.00 0.00 2.90
804 4019 2.344950 AGAGACGCTGAAAAGCTGATG 58.655 47.619 0.00 0.00 0.00 3.07
805 4020 0.801251 AGACGCTGAAAAGCTGATGC 59.199 50.000 0.00 0.00 40.05 3.91
806 4021 0.518636 GACGCTGAAAAGCTGATGCA 59.481 50.000 0.00 0.00 42.74 3.96
807 4022 0.520404 ACGCTGAAAAGCTGATGCAG 59.480 50.000 3.78 3.78 42.74 4.41
808 4023 0.179171 CGCTGAAAAGCTGATGCAGG 60.179 55.000 9.28 0.00 42.74 4.85
809 4024 1.171308 GCTGAAAAGCTGATGCAGGA 58.829 50.000 9.28 0.00 42.74 3.86
810 4025 1.132643 GCTGAAAAGCTGATGCAGGAG 59.867 52.381 9.28 0.00 42.74 3.69
823 4038 1.994463 CAGGAGGGTGGAAAGGAGG 59.006 63.158 0.00 0.00 0.00 4.30
832 4047 1.552792 GTGGAAAGGAGGAGGACAGAG 59.447 57.143 0.00 0.00 0.00 3.35
886 4151 1.837439 TGGCATCTCGATTACCAACCT 59.163 47.619 0.00 0.00 0.00 3.50
1021 4291 2.291741 ACAACAAAGCAAGAGCAGCTAC 59.708 45.455 0.00 0.00 42.53 3.58
1045 4315 1.555075 TGCAATCACTACCCAGTCTCC 59.445 52.381 0.00 0.00 30.46 3.71
1053 4323 3.071023 CACTACCCAGTCTCCAAGAAACA 59.929 47.826 0.00 0.00 30.46 2.83
1207 4484 1.141881 CCTACCGCTGCTGTACCTG 59.858 63.158 0.00 0.00 0.00 4.00
1215 4492 4.033776 GCTGTACCTGGCCTGCCA 62.034 66.667 10.98 10.98 45.02 4.92
1515 4792 0.744414 GCGGCCTTGATGCAGAAGTA 60.744 55.000 0.00 0.00 0.00 2.24
1521 4798 2.012673 CTTGATGCAGAAGTAGCCACC 58.987 52.381 0.00 0.00 0.00 4.61
1543 4820 5.719085 ACCACCCATATTTTCTTACATGCAA 59.281 36.000 0.00 0.00 0.00 4.08
1549 4826 6.474427 CCATATTTTCTTACATGCAAGCACTG 59.526 38.462 0.34 0.12 0.00 3.66
1550 4827 4.916983 TTTTCTTACATGCAAGCACTGT 57.083 36.364 0.34 6.17 0.00 3.55
1562 4839 6.384258 TGCAAGCACTGTATTTTCTTTACA 57.616 33.333 0.00 0.00 0.00 2.41
1674 4954 7.475015 ACATTTTGTATGTGATGTGTATCAGC 58.525 34.615 0.00 0.00 43.66 4.26
1688 4968 7.066307 TGTGTATCAGCTGTTCATATACCAT 57.934 36.000 14.67 0.00 0.00 3.55
1738 5018 6.459066 TGTTGGTGTTTCTTGAATTTTGACA 58.541 32.000 0.00 0.00 0.00 3.58
1757 5037 4.023279 TGACAGTTGTTCCATTGCACATAC 60.023 41.667 0.00 0.00 0.00 2.39
1766 5046 4.570930 TCCATTGCACATACTCGTGTTTA 58.429 39.130 0.00 0.00 39.19 2.01
1771 5053 7.254761 CCATTGCACATACTCGTGTTTATATGT 60.255 37.037 0.00 0.00 38.49 2.29
1809 5091 4.469657 AGGCCAAAACTGACAGATGTTTA 58.530 39.130 10.08 0.00 35.63 2.01
1810 5092 4.520492 AGGCCAAAACTGACAGATGTTTAG 59.480 41.667 10.08 1.46 35.63 1.85
1817 5100 8.523464 CAAAACTGACAGATGTTTAGTTTTTCG 58.477 33.333 24.21 16.78 44.11 3.46
1829 5112 6.908284 TGTTTAGTTTTTCGAAAGGAATGTCG 59.092 34.615 10.98 0.00 38.62 4.35
1862 5145 3.319405 ACCTCTACCTACTCGAATGCATG 59.681 47.826 0.00 0.00 0.00 4.06
1877 5160 9.385902 CTCGAATGCATGTAACCATAAATTTAG 57.614 33.333 0.00 0.00 0.00 1.85
1903 5186 6.403866 AAATAGAAACAAGACAACATGGCA 57.596 33.333 0.00 0.00 0.00 4.92
1927 5210 4.750021 ATCATCTACTTGCAAGCAGAGA 57.250 40.909 28.47 24.95 32.25 3.10
1933 5216 1.268899 ACTTGCAAGCAGAGAACATGC 59.731 47.619 26.27 0.00 44.18 4.06
1976 5261 8.499162 AGAATCACAACAAAGACGAGATAAAAG 58.501 33.333 0.00 0.00 0.00 2.27
2005 5290 5.351465 ACATACAACTAAGTCGGCATTCTTG 59.649 40.000 0.00 0.00 0.00 3.02
2048 5333 2.100631 CCCTCGTGCCGATGTCAAC 61.101 63.158 0.00 0.00 34.61 3.18
2070 5355 2.839975 GGTCTAGCCTATGAAAGCCAC 58.160 52.381 0.00 0.00 0.00 5.01
2084 5369 1.094785 AGCCACGATGGGAATTTTCG 58.905 50.000 6.23 0.00 38.19 3.46
2094 5379 7.170828 CACGATGGGAATTTTCGTTATAGATGA 59.829 37.037 0.00 0.00 34.66 2.92
2100 5385 7.284716 GGGAATTTTCGTTATAGATGAAGGGTT 59.715 37.037 0.00 0.00 34.85 4.11
2146 5431 6.693545 CGAGAGAAGAGACAATACATACAACC 59.306 42.308 0.00 0.00 0.00 3.77
2148 5433 8.083828 AGAGAAGAGACAATACATACAACCAT 57.916 34.615 0.00 0.00 0.00 3.55
2198 5483 4.744136 ATCAAGCACAATGATAGATGCG 57.256 40.909 0.00 0.00 42.98 4.73
2241 5526 8.446599 AAAAGAAAGATGTAAAGAGTTTCGGA 57.553 30.769 0.00 0.00 33.29 4.55
2245 5530 7.762159 AGAAAGATGTAAAGAGTTTCGGAGATC 59.238 37.037 0.00 0.00 35.04 2.75
2255 5540 7.045126 AGAGTTTCGGAGATCCAGTATTAAG 57.955 40.000 0.00 0.00 35.04 1.85
2263 5548 6.071896 CGGAGATCCAGTATTAAGCATAGTCA 60.072 42.308 0.00 0.00 35.14 3.41
2276 5561 6.650427 AAGCATAGTCAGGATATACACGAA 57.350 37.500 0.00 0.00 0.00 3.85
2278 5563 5.047943 AGCATAGTCAGGATATACACGAACC 60.048 44.000 0.00 0.00 0.00 3.62
2279 5564 5.278808 GCATAGTCAGGATATACACGAACCA 60.279 44.000 0.00 0.00 0.00 3.67
2280 5565 4.920640 AGTCAGGATATACACGAACCAG 57.079 45.455 0.00 0.00 0.00 4.00
2281 5566 4.279145 AGTCAGGATATACACGAACCAGT 58.721 43.478 0.00 0.00 0.00 4.00
2282 5567 5.443283 AGTCAGGATATACACGAACCAGTA 58.557 41.667 0.00 0.00 0.00 2.74
2283 5568 6.069331 AGTCAGGATATACACGAACCAGTAT 58.931 40.000 0.00 0.00 35.31 2.12
2301 5586 6.100279 ACCAGTATCAACATGTGGAGATATGT 59.900 38.462 9.25 8.75 39.08 2.29
2303 5588 6.426025 CAGTATCAACATGTGGAGATATGTGG 59.574 42.308 9.25 0.00 37.57 4.17
2306 5591 5.670485 TCAACATGTGGAGATATGTGGTAC 58.330 41.667 0.00 0.00 37.57 3.34
2324 5609 4.512198 TGGTACAAACAACAACCAGATACG 59.488 41.667 0.00 0.00 37.09 3.06
2328 5613 7.118101 GGTACAAACAACAACCAGATACGATTA 59.882 37.037 0.00 0.00 32.04 1.75
2330 5615 8.106247 ACAAACAACAACCAGATACGATTAAT 57.894 30.769 0.00 0.00 0.00 1.40
2332 5617 8.849490 CAAACAACAACCAGATACGATTAATTG 58.151 33.333 0.78 0.78 0.00 2.32
2333 5618 6.551736 ACAACAACCAGATACGATTAATTGC 58.448 36.000 2.34 0.00 0.00 3.56
2334 5619 6.374333 ACAACAACCAGATACGATTAATTGCT 59.626 34.615 2.34 0.00 0.00 3.91
2335 5620 7.094377 ACAACAACCAGATACGATTAATTGCTT 60.094 33.333 2.34 0.00 0.00 3.91
2338 5623 8.303876 ACAACCAGATACGATTAATTGCTTTTT 58.696 29.630 2.34 0.00 0.00 1.94
2379 5664 6.919662 CACCATCAAAATATTGTACATCTGCC 59.080 38.462 0.00 0.00 37.79 4.85
2380 5665 6.144854 CCATCAAAATATTGTACATCTGCCG 58.855 40.000 0.00 0.00 37.79 5.69
2381 5666 5.168526 TCAAAATATTGTACATCTGCCGC 57.831 39.130 0.00 0.00 37.79 6.53
2382 5667 4.036262 TCAAAATATTGTACATCTGCCGCC 59.964 41.667 0.00 0.00 37.79 6.13
2383 5668 2.928801 ATATTGTACATCTGCCGCCA 57.071 45.000 0.00 0.00 0.00 5.69
2384 5669 2.700722 TATTGTACATCTGCCGCCAA 57.299 45.000 0.00 0.00 0.00 4.52
2385 5670 1.094785 ATTGTACATCTGCCGCCAAC 58.905 50.000 0.00 0.00 0.00 3.77
2386 5671 0.958382 TTGTACATCTGCCGCCAACC 60.958 55.000 0.00 0.00 0.00 3.77
2387 5672 1.376683 GTACATCTGCCGCCAACCA 60.377 57.895 0.00 0.00 0.00 3.67
2388 5673 0.958382 GTACATCTGCCGCCAACCAA 60.958 55.000 0.00 0.00 0.00 3.67
2389 5674 0.958382 TACATCTGCCGCCAACCAAC 60.958 55.000 0.00 0.00 0.00 3.77
2390 5675 2.115052 ATCTGCCGCCAACCAACA 59.885 55.556 0.00 0.00 0.00 3.33
2391 5676 1.304381 ATCTGCCGCCAACCAACAT 60.304 52.632 0.00 0.00 0.00 2.71
2392 5677 0.034574 ATCTGCCGCCAACCAACATA 60.035 50.000 0.00 0.00 0.00 2.29
2393 5678 0.676466 TCTGCCGCCAACCAACATAG 60.676 55.000 0.00 0.00 0.00 2.23
2394 5679 2.270297 CTGCCGCCAACCAACATAGC 62.270 60.000 0.00 0.00 0.00 2.97
2395 5680 2.791256 CCGCCAACCAACATAGCG 59.209 61.111 0.00 0.00 46.04 4.26
2396 5681 2.791256 CGCCAACCAACATAGCGG 59.209 61.111 0.00 0.00 42.93 5.52
2397 5682 1.743623 CGCCAACCAACATAGCGGA 60.744 57.895 0.00 0.00 42.93 5.54
2398 5683 1.302383 CGCCAACCAACATAGCGGAA 61.302 55.000 0.00 0.00 42.93 4.30
2399 5684 0.885196 GCCAACCAACATAGCGGAAA 59.115 50.000 0.00 0.00 0.00 3.13
2400 5685 1.271102 GCCAACCAACATAGCGGAAAA 59.729 47.619 0.00 0.00 0.00 2.29
2401 5686 2.671070 GCCAACCAACATAGCGGAAAAG 60.671 50.000 0.00 0.00 0.00 2.27
2402 5687 2.556622 CCAACCAACATAGCGGAAAAGT 59.443 45.455 0.00 0.00 0.00 2.66
2403 5688 3.754323 CCAACCAACATAGCGGAAAAGTA 59.246 43.478 0.00 0.00 0.00 2.24
2404 5689 4.142687 CCAACCAACATAGCGGAAAAGTAG 60.143 45.833 0.00 0.00 0.00 2.57
2405 5690 3.606687 ACCAACATAGCGGAAAAGTAGG 58.393 45.455 0.00 0.00 0.00 3.18
2406 5691 3.262405 ACCAACATAGCGGAAAAGTAGGA 59.738 43.478 0.00 0.00 0.00 2.94
2407 5692 4.080526 ACCAACATAGCGGAAAAGTAGGAT 60.081 41.667 0.00 0.00 0.00 3.24
2408 5693 4.511826 CCAACATAGCGGAAAAGTAGGATC 59.488 45.833 0.00 0.00 0.00 3.36
2409 5694 3.978687 ACATAGCGGAAAAGTAGGATCG 58.021 45.455 0.00 0.00 0.00 3.69
2410 5695 2.503920 TAGCGGAAAAGTAGGATCGC 57.496 50.000 0.00 0.00 42.91 4.58
2411 5696 0.535335 AGCGGAAAAGTAGGATCGCA 59.465 50.000 8.17 0.00 44.67 5.10
2412 5697 0.651031 GCGGAAAAGTAGGATCGCAC 59.349 55.000 0.00 0.00 42.27 5.34
2413 5698 2.004583 CGGAAAAGTAGGATCGCACA 57.995 50.000 0.00 0.00 0.00 4.57
2414 5699 1.927174 CGGAAAAGTAGGATCGCACAG 59.073 52.381 0.00 0.00 0.00 3.66
2415 5700 2.280628 GGAAAAGTAGGATCGCACAGG 58.719 52.381 0.00 0.00 0.00 4.00
2416 5701 1.666189 GAAAAGTAGGATCGCACAGGC 59.334 52.381 0.00 0.00 0.00 4.85
2426 5711 4.767255 GCACAGGCGGTCAGGGAG 62.767 72.222 0.00 0.00 0.00 4.30
2427 5712 4.087892 CACAGGCGGTCAGGGAGG 62.088 72.222 0.00 0.00 0.00 4.30
2434 5719 3.827898 GGTCAGGGAGGCGACGAG 61.828 72.222 0.00 0.00 32.74 4.18
2435 5720 3.827898 GTCAGGGAGGCGACGAGG 61.828 72.222 0.00 0.00 0.00 4.63
2438 5723 4.698625 AGGGAGGCGACGAGGGTT 62.699 66.667 0.00 0.00 0.00 4.11
2439 5724 4.144703 GGGAGGCGACGAGGGTTC 62.145 72.222 0.00 0.00 0.00 3.62
2440 5725 4.144703 GGAGGCGACGAGGGTTCC 62.145 72.222 0.00 0.00 0.00 3.62
2441 5726 4.144703 GAGGCGACGAGGGTTCCC 62.145 72.222 0.00 0.00 0.00 3.97
2442 5727 4.698625 AGGCGACGAGGGTTCCCT 62.699 66.667 10.51 10.51 39.51 4.20
2443 5728 3.703127 GGCGACGAGGGTTCCCTT 61.703 66.667 12.04 0.00 36.43 3.95
2444 5729 2.434359 GCGACGAGGGTTCCCTTG 60.434 66.667 20.35 20.35 42.06 3.61
2445 5730 2.434359 CGACGAGGGTTCCCTTGC 60.434 66.667 21.52 14.36 40.45 4.01
2446 5731 2.434359 GACGAGGGTTCCCTTGCG 60.434 66.667 21.52 17.93 40.45 4.85
2447 5732 4.699522 ACGAGGGTTCCCTTGCGC 62.700 66.667 21.52 0.00 40.45 6.09
2478 5763 3.839432 CCGCCGGTTCCCTCTCTC 61.839 72.222 1.90 0.00 0.00 3.20
2479 5764 2.756283 CGCCGGTTCCCTCTCTCT 60.756 66.667 1.90 0.00 0.00 3.10
2480 5765 2.776913 CGCCGGTTCCCTCTCTCTC 61.777 68.421 1.90 0.00 0.00 3.20
2481 5766 2.428085 GCCGGTTCCCTCTCTCTCC 61.428 68.421 1.90 0.00 0.00 3.71
2482 5767 2.122167 CCGGTTCCCTCTCTCTCCG 61.122 68.421 0.00 0.00 38.05 4.63
2483 5768 1.378778 CGGTTCCCTCTCTCTCCGT 60.379 63.158 0.00 0.00 34.38 4.69
2484 5769 1.378124 CGGTTCCCTCTCTCTCCGTC 61.378 65.000 0.00 0.00 34.38 4.79
2485 5770 1.378124 GGTTCCCTCTCTCTCCGTCG 61.378 65.000 0.00 0.00 0.00 5.12
2486 5771 1.077644 TTCCCTCTCTCTCCGTCGG 60.078 63.158 4.39 4.39 0.00 4.79
2487 5772 3.213402 CCCTCTCTCTCCGTCGGC 61.213 72.222 6.34 0.00 0.00 5.54
2488 5773 3.213402 CCTCTCTCTCCGTCGGCC 61.213 72.222 6.34 0.00 0.00 6.13
2489 5774 3.578272 CTCTCTCTCCGTCGGCCG 61.578 72.222 22.12 22.12 0.00 6.13
2514 5799 4.410033 GACGGGAGGGAGGGGGAA 62.410 72.222 0.00 0.00 0.00 3.97
2515 5800 4.735599 ACGGGAGGGAGGGGGAAC 62.736 72.222 0.00 0.00 0.00 3.62
2530 5815 0.108281 GGAACCTCGGGTCTGTTAGC 60.108 60.000 0.36 0.00 33.12 3.09
2531 5816 0.896226 GAACCTCGGGTCTGTTAGCT 59.104 55.000 0.00 0.00 33.12 3.32
2532 5817 2.097825 GAACCTCGGGTCTGTTAGCTA 58.902 52.381 0.00 0.00 33.12 3.32
2533 5818 1.765230 ACCTCGGGTCTGTTAGCTAG 58.235 55.000 0.00 0.00 0.00 3.42
2534 5819 1.033574 CCTCGGGTCTGTTAGCTAGG 58.966 60.000 0.00 0.00 0.00 3.02
2535 5820 1.685491 CCTCGGGTCTGTTAGCTAGGT 60.685 57.143 0.00 0.00 0.00 3.08
2536 5821 1.405821 CTCGGGTCTGTTAGCTAGGTG 59.594 57.143 4.27 0.00 0.00 4.00
2537 5822 1.183549 CGGGTCTGTTAGCTAGGTGT 58.816 55.000 4.27 0.00 0.00 4.16
2538 5823 1.135083 CGGGTCTGTTAGCTAGGTGTG 60.135 57.143 4.27 0.00 0.00 3.82
2539 5824 1.900486 GGGTCTGTTAGCTAGGTGTGT 59.100 52.381 4.27 0.00 0.00 3.72
2540 5825 2.353803 GGGTCTGTTAGCTAGGTGTGTG 60.354 54.545 4.27 0.00 0.00 3.82
2541 5826 2.299297 GGTCTGTTAGCTAGGTGTGTGT 59.701 50.000 4.27 0.00 0.00 3.72
2542 5827 3.318017 GTCTGTTAGCTAGGTGTGTGTG 58.682 50.000 4.27 0.00 0.00 3.82
2543 5828 2.963101 TCTGTTAGCTAGGTGTGTGTGT 59.037 45.455 4.27 0.00 0.00 3.72
2544 5829 3.059884 CTGTTAGCTAGGTGTGTGTGTG 58.940 50.000 4.27 0.00 0.00 3.82
2545 5830 2.696187 TGTTAGCTAGGTGTGTGTGTGA 59.304 45.455 4.27 0.00 0.00 3.58
2546 5831 3.323691 TGTTAGCTAGGTGTGTGTGTGAT 59.676 43.478 4.27 0.00 0.00 3.06
2547 5832 4.525100 TGTTAGCTAGGTGTGTGTGTGATA 59.475 41.667 4.27 0.00 0.00 2.15
2548 5833 3.876274 AGCTAGGTGTGTGTGTGATAG 57.124 47.619 0.00 0.00 0.00 2.08
2549 5834 2.497675 AGCTAGGTGTGTGTGTGATAGG 59.502 50.000 0.00 0.00 0.00 2.57
2550 5835 2.418746 GCTAGGTGTGTGTGTGATAGGG 60.419 54.545 0.00 0.00 0.00 3.53
2551 5836 1.729586 AGGTGTGTGTGTGATAGGGT 58.270 50.000 0.00 0.00 0.00 4.34
2552 5837 2.054799 AGGTGTGTGTGTGATAGGGTT 58.945 47.619 0.00 0.00 0.00 4.11
2553 5838 3.244582 AGGTGTGTGTGTGATAGGGTTA 58.755 45.455 0.00 0.00 0.00 2.85
2554 5839 3.649023 AGGTGTGTGTGTGATAGGGTTAA 59.351 43.478 0.00 0.00 0.00 2.01
2555 5840 4.000988 GGTGTGTGTGTGATAGGGTTAAG 58.999 47.826 0.00 0.00 0.00 1.85
2556 5841 4.000988 GTGTGTGTGTGATAGGGTTAAGG 58.999 47.826 0.00 0.00 0.00 2.69
2557 5842 3.649023 TGTGTGTGTGATAGGGTTAAGGT 59.351 43.478 0.00 0.00 0.00 3.50
2558 5843 4.103469 TGTGTGTGTGATAGGGTTAAGGTT 59.897 41.667 0.00 0.00 0.00 3.50
2559 5844 4.454504 GTGTGTGTGATAGGGTTAAGGTTG 59.545 45.833 0.00 0.00 0.00 3.77
2560 5845 4.348461 TGTGTGTGATAGGGTTAAGGTTGA 59.652 41.667 0.00 0.00 0.00 3.18
2561 5846 4.935808 GTGTGTGATAGGGTTAAGGTTGAG 59.064 45.833 0.00 0.00 0.00 3.02
2562 5847 4.019681 TGTGTGATAGGGTTAAGGTTGAGG 60.020 45.833 0.00 0.00 0.00 3.86
2563 5848 3.521937 TGTGATAGGGTTAAGGTTGAGGG 59.478 47.826 0.00 0.00 0.00 4.30
2564 5849 3.778629 GTGATAGGGTTAAGGTTGAGGGA 59.221 47.826 0.00 0.00 0.00 4.20
2565 5850 4.037927 TGATAGGGTTAAGGTTGAGGGAG 58.962 47.826 0.00 0.00 0.00 4.30
2566 5851 2.735259 AGGGTTAAGGTTGAGGGAGA 57.265 50.000 0.00 0.00 0.00 3.71
2567 5852 2.267192 AGGGTTAAGGTTGAGGGAGAC 58.733 52.381 0.00 0.00 0.00 3.36
2568 5853 1.066358 GGGTTAAGGTTGAGGGAGACG 60.066 57.143 0.00 0.00 0.00 4.18
2569 5854 1.675116 GGTTAAGGTTGAGGGAGACGC 60.675 57.143 0.00 0.00 0.00 5.19
2570 5855 1.275573 GTTAAGGTTGAGGGAGACGCT 59.724 52.381 0.00 0.00 0.00 5.07
2571 5856 0.895530 TAAGGTTGAGGGAGACGCTG 59.104 55.000 0.00 0.00 0.00 5.18
2572 5857 2.435059 GGTTGAGGGAGACGCTGC 60.435 66.667 0.00 0.00 0.00 5.25
2573 5858 2.435059 GTTGAGGGAGACGCTGCC 60.435 66.667 8.90 8.90 42.52 4.85
2574 5859 4.069232 TTGAGGGAGACGCTGCCG 62.069 66.667 10.70 0.00 46.84 5.69
2576 5861 4.200283 GAGGGAGACGCTGCCGAG 62.200 72.222 10.70 0.00 46.84 4.63
2595 5880 3.645975 CCGTTGCGGTGGTGTCAC 61.646 66.667 0.00 0.00 42.73 3.67
2596 5881 3.995669 CGTTGCGGTGGTGTCACG 61.996 66.667 0.00 0.00 44.50 4.35
2597 5882 2.893404 GTTGCGGTGGTGTCACGT 60.893 61.111 0.00 0.00 44.50 4.49
2598 5883 2.586635 TTGCGGTGGTGTCACGTC 60.587 61.111 0.00 0.00 44.50 4.34
2599 5884 4.934942 TGCGGTGGTGTCACGTCG 62.935 66.667 0.00 2.23 44.50 5.12
2601 5886 3.968568 CGGTGGTGTCACGTCGGA 61.969 66.667 0.00 0.00 44.50 4.55
2602 5887 2.418356 GGTGGTGTCACGTCGGAA 59.582 61.111 0.00 0.00 44.50 4.30
2603 5888 1.005394 GGTGGTGTCACGTCGGAAT 60.005 57.895 0.00 0.00 44.50 3.01
2604 5889 0.244450 GGTGGTGTCACGTCGGAATA 59.756 55.000 0.00 0.00 44.50 1.75
2605 5890 1.337074 GGTGGTGTCACGTCGGAATAA 60.337 52.381 0.00 0.00 44.50 1.40
2606 5891 1.990563 GTGGTGTCACGTCGGAATAAG 59.009 52.381 0.00 0.00 33.87 1.73
2607 5892 1.614903 TGGTGTCACGTCGGAATAAGT 59.385 47.619 0.00 0.00 0.00 2.24
2608 5893 2.036217 TGGTGTCACGTCGGAATAAGTT 59.964 45.455 0.00 0.00 0.00 2.66
2609 5894 3.062042 GGTGTCACGTCGGAATAAGTTT 58.938 45.455 0.00 0.00 0.00 2.66
2610 5895 3.122445 GGTGTCACGTCGGAATAAGTTTC 59.878 47.826 0.00 0.00 0.00 2.78
2611 5896 3.985925 GTGTCACGTCGGAATAAGTTTCT 59.014 43.478 0.00 0.00 0.00 2.52
2612 5897 4.089636 GTGTCACGTCGGAATAAGTTTCTC 59.910 45.833 0.00 0.00 0.00 2.87
2613 5898 3.611549 GTCACGTCGGAATAAGTTTCTCC 59.388 47.826 0.00 0.00 0.00 3.71
2617 5902 2.685850 CGGAATAAGTTTCTCCGGGT 57.314 50.000 14.53 0.00 46.66 5.28
2618 5903 2.981898 CGGAATAAGTTTCTCCGGGTT 58.018 47.619 14.53 0.00 46.66 4.11
2619 5904 2.934553 CGGAATAAGTTTCTCCGGGTTC 59.065 50.000 14.53 0.00 46.66 3.62
2620 5905 3.276857 GGAATAAGTTTCTCCGGGTTCC 58.723 50.000 0.00 0.00 0.00 3.62
2621 5906 3.307904 GGAATAAGTTTCTCCGGGTTCCA 60.308 47.826 0.00 0.00 35.22 3.53
2622 5907 4.524053 GAATAAGTTTCTCCGGGTTCCAT 58.476 43.478 0.00 0.00 0.00 3.41
2623 5908 2.971901 AAGTTTCTCCGGGTTCCATT 57.028 45.000 0.00 0.00 0.00 3.16
2624 5909 2.491675 AGTTTCTCCGGGTTCCATTC 57.508 50.000 0.00 0.00 0.00 2.67
2625 5910 1.084289 GTTTCTCCGGGTTCCATTCG 58.916 55.000 0.00 0.00 0.00 3.34
2626 5911 0.675522 TTTCTCCGGGTTCCATTCGC 60.676 55.000 0.00 0.00 0.00 4.70
2627 5912 2.845752 TTCTCCGGGTTCCATTCGCG 62.846 60.000 0.00 0.00 40.10 5.87
2632 5917 3.508840 GGTTCCATTCGCGGCCAG 61.509 66.667 6.13 0.00 0.00 4.85
2633 5918 3.508840 GTTCCATTCGCGGCCAGG 61.509 66.667 6.13 3.66 0.00 4.45
2657 5942 2.094762 GCTTTTGCCTTCGTCTAGGA 57.905 50.000 5.39 0.00 37.50 2.94
2658 5943 2.003301 GCTTTTGCCTTCGTCTAGGAG 58.997 52.381 5.39 0.00 37.50 3.69
2659 5944 2.003301 CTTTTGCCTTCGTCTAGGAGC 58.997 52.381 5.39 0.00 37.50 4.70
2660 5945 0.249398 TTTGCCTTCGTCTAGGAGCC 59.751 55.000 5.39 0.00 37.50 4.70
2661 5946 0.902984 TTGCCTTCGTCTAGGAGCCA 60.903 55.000 5.39 0.00 37.50 4.75
2662 5947 1.323271 TGCCTTCGTCTAGGAGCCAG 61.323 60.000 5.39 0.00 37.50 4.85
2663 5948 1.439644 CCTTCGTCTAGGAGCCAGC 59.560 63.158 0.00 0.00 37.50 4.85
2664 5949 1.064946 CTTCGTCTAGGAGCCAGCG 59.935 63.158 0.00 0.00 0.00 5.18
2665 5950 2.343163 CTTCGTCTAGGAGCCAGCGG 62.343 65.000 0.00 0.00 0.00 5.52
2666 5951 2.829003 CGTCTAGGAGCCAGCGGA 60.829 66.667 0.00 0.00 0.00 5.54
2667 5952 2.840066 CGTCTAGGAGCCAGCGGAG 61.840 68.421 0.00 0.00 0.00 4.63
2668 5953 1.755008 GTCTAGGAGCCAGCGGAGT 60.755 63.158 0.00 0.00 0.00 3.85
2669 5954 1.000486 TCTAGGAGCCAGCGGAGTT 60.000 57.895 0.00 0.00 0.00 3.01
2670 5955 1.142748 CTAGGAGCCAGCGGAGTTG 59.857 63.158 0.00 0.00 38.89 3.16
2677 5962 2.190578 CAGCGGAGTTGGGGATCC 59.809 66.667 1.92 1.92 34.22 3.36
2678 5963 3.090532 AGCGGAGTTGGGGATCCC 61.091 66.667 23.95 23.95 45.71 3.85
2688 5973 4.855072 GGGATCCCCGGGTCTCGT 62.855 72.222 21.42 0.00 37.11 4.18
2689 5974 3.225061 GGATCCCCGGGTCTCGTC 61.225 72.222 21.85 9.38 37.11 4.20
2690 5975 3.593794 GATCCCCGGGTCTCGTCG 61.594 72.222 21.85 1.24 37.11 5.12
2691 5976 4.119363 ATCCCCGGGTCTCGTCGA 62.119 66.667 21.85 7.90 37.11 4.20
2692 5977 4.790962 TCCCCGGGTCTCGTCGAG 62.791 72.222 21.85 16.33 37.11 4.04
2695 5980 3.507009 CCGGGTCTCGTCGAGGTC 61.507 72.222 21.63 14.45 37.11 3.85
2696 5981 3.862402 CGGGTCTCGTCGAGGTCG 61.862 72.222 21.63 17.45 41.45 4.79
2697 5982 4.176851 GGGTCTCGTCGAGGTCGC 62.177 72.222 21.63 17.70 39.60 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.181455 TGTTCGTATGGATCTCCCCAATG 60.181 47.826 0.00 0.00 40.04 2.82
4 5 2.168458 TGTTCGTATGGATCTCCCCA 57.832 50.000 0.00 0.00 41.05 4.96
7 8 4.209288 CGATTGTTGTTCGTATGGATCTCC 59.791 45.833 0.00 0.00 32.08 3.71
8 9 4.209288 CCGATTGTTGTTCGTATGGATCTC 59.791 45.833 0.00 0.00 34.85 2.75
9 10 4.119862 CCGATTGTTGTTCGTATGGATCT 58.880 43.478 0.00 0.00 34.85 2.75
12 13 2.623535 CCCGATTGTTGTTCGTATGGA 58.376 47.619 0.00 0.00 34.85 3.41
14 15 2.006888 AGCCCGATTGTTGTTCGTATG 58.993 47.619 0.00 0.00 34.85 2.39
15 16 2.396590 AGCCCGATTGTTGTTCGTAT 57.603 45.000 0.00 0.00 34.85 3.06
16 17 2.029200 TGTAGCCCGATTGTTGTTCGTA 60.029 45.455 0.00 0.00 34.85 3.43
17 18 1.270412 TGTAGCCCGATTGTTGTTCGT 60.270 47.619 0.00 0.00 34.85 3.85
18 19 1.434555 TGTAGCCCGATTGTTGTTCG 58.565 50.000 0.00 0.00 36.38 3.95
19 20 5.751243 ATATTGTAGCCCGATTGTTGTTC 57.249 39.130 0.00 0.00 0.00 3.18
20 21 7.817418 ATAATATTGTAGCCCGATTGTTGTT 57.183 32.000 0.00 0.00 0.00 2.83
41 42 9.959749 GCAAATCCTCCGTTTCAATAATAATAA 57.040 29.630 0.00 0.00 0.00 1.40
42 43 8.573035 GGCAAATCCTCCGTTTCAATAATAATA 58.427 33.333 0.00 0.00 0.00 0.98
43 44 7.287696 AGGCAAATCCTCCGTTTCAATAATAAT 59.712 33.333 0.00 0.00 43.20 1.28
44 45 6.605594 AGGCAAATCCTCCGTTTCAATAATAA 59.394 34.615 0.00 0.00 43.20 1.40
46 47 4.956075 AGGCAAATCCTCCGTTTCAATAAT 59.044 37.500 0.00 0.00 43.20 1.28
49 50 2.807676 AGGCAAATCCTCCGTTTCAAT 58.192 42.857 0.00 0.00 43.20 2.57
50 51 2.286365 AGGCAAATCCTCCGTTTCAA 57.714 45.000 0.00 0.00 43.20 2.69
60 61 8.796475 TGCTTAATTAATAGATGAGGCAAATCC 58.204 33.333 0.00 0.00 0.00 3.01
62 63 9.578576 TCTGCTTAATTAATAGATGAGGCAAAT 57.421 29.630 0.00 0.00 0.00 2.32
63 64 8.978874 TCTGCTTAATTAATAGATGAGGCAAA 57.021 30.769 0.00 0.00 0.00 3.68
64 65 8.978874 TTCTGCTTAATTAATAGATGAGGCAA 57.021 30.769 11.09 0.79 0.00 4.52
65 66 8.432013 TCTTCTGCTTAATTAATAGATGAGGCA 58.568 33.333 16.19 11.39 0.00 4.75
66 67 8.839310 TCTTCTGCTTAATTAATAGATGAGGC 57.161 34.615 16.19 8.49 0.00 4.70
72 73 9.319143 GCAACTCTCTTCTGCTTAATTAATAGA 57.681 33.333 0.00 3.64 33.20 1.98
73 74 8.555361 GGCAACTCTCTTCTGCTTAATTAATAG 58.445 37.037 0.00 1.34 36.32 1.73
74 75 8.438676 GGCAACTCTCTTCTGCTTAATTAATA 57.561 34.615 0.00 0.00 36.32 0.98
75 76 7.326968 GGCAACTCTCTTCTGCTTAATTAAT 57.673 36.000 0.00 0.00 36.32 1.40
76 77 6.743575 GGCAACTCTCTTCTGCTTAATTAA 57.256 37.500 0.00 0.00 36.32 1.40
97 98 4.618067 CGGTTTTTCGTTAATTAACCAGGC 59.382 41.667 20.08 7.84 38.49 4.85
98 99 5.155643 CCGGTTTTTCGTTAATTAACCAGG 58.844 41.667 20.08 12.03 38.49 4.45
99 100 5.155643 CCCGGTTTTTCGTTAATTAACCAG 58.844 41.667 20.08 9.28 38.49 4.00
100 101 4.558296 GCCCGGTTTTTCGTTAATTAACCA 60.558 41.667 20.08 7.13 38.49 3.67
101 102 3.919804 GCCCGGTTTTTCGTTAATTAACC 59.080 43.478 20.08 8.13 35.91 2.85
102 103 3.603343 CGCCCGGTTTTTCGTTAATTAAC 59.397 43.478 16.87 16.87 0.00 2.01
103 104 3.499918 TCGCCCGGTTTTTCGTTAATTAA 59.500 39.130 0.00 0.00 0.00 1.40
107 108 1.303309 TTCGCCCGGTTTTTCGTTAA 58.697 45.000 0.00 0.00 0.00 2.01
109 110 0.455005 TTTTCGCCCGGTTTTTCGTT 59.545 45.000 0.00 0.00 0.00 3.85
110 111 0.248580 GTTTTCGCCCGGTTTTTCGT 60.249 50.000 0.00 0.00 0.00 3.85
112 113 0.935831 CGGTTTTCGCCCGGTTTTTC 60.936 55.000 0.00 0.00 41.78 2.29
113 114 1.066093 CGGTTTTCGCCCGGTTTTT 59.934 52.632 0.00 0.00 41.78 1.94
114 115 2.723116 CGGTTTTCGCCCGGTTTT 59.277 55.556 0.00 0.00 41.78 2.43
121 122 0.593008 GGTTTGTGACGGTTTTCGCC 60.593 55.000 0.00 0.00 43.89 5.54
122 123 0.926628 CGGTTTGTGACGGTTTTCGC 60.927 55.000 0.00 0.00 43.89 4.70
124 125 0.593008 GGCGGTTTGTGACGGTTTTC 60.593 55.000 0.00 0.00 0.00 2.29
126 127 2.825975 CGGCGGTTTGTGACGGTTT 61.826 57.895 0.00 0.00 0.00 3.27
127 128 3.273834 CGGCGGTTTGTGACGGTT 61.274 61.111 0.00 0.00 0.00 4.44
128 129 4.224274 TCGGCGGTTTGTGACGGT 62.224 61.111 7.21 0.00 0.00 4.83
129 130 3.411351 CTCGGCGGTTTGTGACGG 61.411 66.667 7.21 0.00 0.00 4.79
131 132 2.604174 CCACTCGGCGGTTTGTGAC 61.604 63.158 7.21 0.00 32.72 3.67
143 144 1.633561 CTATCTGTGTGTGCCACTCG 58.366 55.000 0.00 0.00 44.81 4.18
144 145 1.363744 GCTATCTGTGTGTGCCACTC 58.636 55.000 0.00 0.00 44.81 3.51
145 146 0.036010 GGCTATCTGTGTGTGCCACT 60.036 55.000 0.00 0.00 44.81 4.00
146 147 1.026718 GGGCTATCTGTGTGTGCCAC 61.027 60.000 0.00 0.00 44.85 5.01
147 148 1.299648 GGGCTATCTGTGTGTGCCA 59.700 57.895 0.00 0.00 44.85 4.92
148 149 1.026718 GTGGGCTATCTGTGTGTGCC 61.027 60.000 0.00 0.00 42.56 5.01
149 150 0.321564 TGTGGGCTATCTGTGTGTGC 60.322 55.000 0.00 0.00 0.00 4.57
150 151 1.442769 GTGTGGGCTATCTGTGTGTG 58.557 55.000 0.00 0.00 0.00 3.82
152 153 0.392998 GGGTGTGGGCTATCTGTGTG 60.393 60.000 0.00 0.00 0.00 3.82
153 154 1.899437 CGGGTGTGGGCTATCTGTGT 61.899 60.000 0.00 0.00 0.00 3.72
156 157 2.203070 GCGGGTGTGGGCTATCTG 60.203 66.667 0.00 0.00 0.00 2.90
158 159 2.942648 GAAGGCGGGTGTGGGCTATC 62.943 65.000 0.00 0.00 39.67 2.08
159 160 3.015145 AAGGCGGGTGTGGGCTAT 61.015 61.111 0.00 0.00 39.67 2.97
160 161 3.712907 GAAGGCGGGTGTGGGCTA 61.713 66.667 0.00 0.00 39.67 3.93
163 164 4.263572 TGTGAAGGCGGGTGTGGG 62.264 66.667 0.00 0.00 0.00 4.61
164 165 2.669569 CTGTGAAGGCGGGTGTGG 60.670 66.667 0.00 0.00 0.00 4.17
165 166 1.669115 CTCTGTGAAGGCGGGTGTG 60.669 63.158 0.00 0.00 0.00 3.82
167 168 1.079543 CTCTCTGTGAAGGCGGGTG 60.080 63.158 0.00 0.00 0.00 4.61
168 169 1.534235 ACTCTCTGTGAAGGCGGGT 60.534 57.895 0.00 0.00 0.00 5.28
169 170 3.382111 ACTCTCTGTGAAGGCGGG 58.618 61.111 0.00 0.00 0.00 6.13
179 180 0.805322 GCTCGATGTGGCACTCTCTG 60.805 60.000 19.83 11.34 0.00 3.35
180 181 0.969917 AGCTCGATGTGGCACTCTCT 60.970 55.000 19.83 4.59 0.00 3.10
181 182 0.741326 TAGCTCGATGTGGCACTCTC 59.259 55.000 19.83 14.02 0.00 3.20
182 183 0.743688 CTAGCTCGATGTGGCACTCT 59.256 55.000 19.83 6.06 0.00 3.24
183 184 0.873743 GCTAGCTCGATGTGGCACTC 60.874 60.000 19.83 12.39 0.00 3.51
185 186 1.153568 TGCTAGCTCGATGTGGCAC 60.154 57.895 17.23 11.55 0.00 5.01
186 187 1.153568 GTGCTAGCTCGATGTGGCA 60.154 57.895 17.23 1.62 0.00 4.92
187 188 2.233654 CGTGCTAGCTCGATGTGGC 61.234 63.158 29.93 0.00 35.30 5.01
188 189 2.233654 GCGTGCTAGCTCGATGTGG 61.234 63.158 35.67 12.07 35.30 4.17
189 190 1.078201 TTGCGTGCTAGCTCGATGTG 61.078 55.000 35.67 12.73 38.13 3.21
190 191 0.803768 CTTGCGTGCTAGCTCGATGT 60.804 55.000 35.67 0.00 38.13 3.06
193 194 2.507102 GCTTGCGTGCTAGCTCGA 60.507 61.111 35.67 20.86 40.61 4.04
194 195 3.906649 CGCTTGCGTGCTAGCTCG 61.907 66.667 29.51 29.51 41.37 5.03
195 196 2.793322 GACGCTTGCGTGCTAGCTC 61.793 63.158 25.34 11.79 41.37 4.09
196 197 2.811317 GACGCTTGCGTGCTAGCT 60.811 61.111 25.34 11.77 41.37 3.32
201 202 3.686392 GACGATGACGCTTGCGTGC 62.686 63.158 25.34 15.96 43.96 5.34
202 203 1.686566 ATGACGATGACGCTTGCGTG 61.687 55.000 25.34 12.90 43.96 5.34
203 204 1.413767 GATGACGATGACGCTTGCGT 61.414 55.000 20.76 20.76 43.96 5.24
204 205 1.270968 GATGACGATGACGCTTGCG 59.729 57.895 13.70 13.70 43.96 4.85
206 207 1.633561 AGTGATGACGATGACGCTTG 58.366 50.000 0.00 0.00 43.96 4.01
207 208 2.094494 AGAAGTGATGACGATGACGCTT 60.094 45.455 0.00 0.00 43.96 4.68
208 209 1.474478 AGAAGTGATGACGATGACGCT 59.526 47.619 0.00 0.00 43.96 5.07
209 210 1.849219 GAGAAGTGATGACGATGACGC 59.151 52.381 0.00 0.00 43.96 5.19
210 211 2.455032 GGAGAAGTGATGACGATGACG 58.545 52.381 0.00 0.00 45.75 4.35
211 212 2.482142 GGGGAGAAGTGATGACGATGAC 60.482 54.545 0.00 0.00 0.00 3.06
212 213 1.757118 GGGGAGAAGTGATGACGATGA 59.243 52.381 0.00 0.00 0.00 2.92
213 214 1.482182 TGGGGAGAAGTGATGACGATG 59.518 52.381 0.00 0.00 0.00 3.84
215 216 1.550524 CTTGGGGAGAAGTGATGACGA 59.449 52.381 0.00 0.00 0.00 4.20
216 217 2.009042 GCTTGGGGAGAAGTGATGACG 61.009 57.143 0.00 0.00 0.00 4.35
217 218 1.003580 TGCTTGGGGAGAAGTGATGAC 59.996 52.381 0.00 0.00 0.00 3.06
219 220 1.681166 CCTGCTTGGGGAGAAGTGATG 60.681 57.143 0.00 0.00 32.36 3.07
220 221 0.622665 CCTGCTTGGGGAGAAGTGAT 59.377 55.000 0.00 0.00 32.36 3.06
222 223 1.676967 GCCTGCTTGGGGAGAAGTG 60.677 63.158 0.00 0.00 36.00 3.16
230 231 2.879907 CAATGACGCCTGCTTGGG 59.120 61.111 0.00 0.00 36.00 4.12
231 232 2.180017 GCAATGACGCCTGCTTGG 59.820 61.111 0.00 0.00 35.62 3.61
241 242 5.809001 TGATAGATTAGGGATGGCAATGAC 58.191 41.667 0.00 0.00 0.00 3.06
242 243 5.786975 TCTGATAGATTAGGGATGGCAATGA 59.213 40.000 0.00 0.00 0.00 2.57
243 244 6.058553 TCTGATAGATTAGGGATGGCAATG 57.941 41.667 0.00 0.00 0.00 2.82
244 245 6.708885 TTCTGATAGATTAGGGATGGCAAT 57.291 37.500 0.00 0.00 0.00 3.56
245 246 6.514012 TTTCTGATAGATTAGGGATGGCAA 57.486 37.500 0.00 0.00 0.00 4.52
246 247 5.513788 GCTTTCTGATAGATTAGGGATGGCA 60.514 44.000 0.00 0.00 0.00 4.92
247 248 4.940654 GCTTTCTGATAGATTAGGGATGGC 59.059 45.833 0.00 0.00 0.00 4.40
248 249 5.047021 TCGCTTTCTGATAGATTAGGGATGG 60.047 44.000 0.00 0.00 29.63 3.51
250 251 5.777732 AGTCGCTTTCTGATAGATTAGGGAT 59.222 40.000 0.00 0.00 33.85 3.85
251 252 5.141182 AGTCGCTTTCTGATAGATTAGGGA 58.859 41.667 0.00 0.00 31.02 4.20
252 253 5.461032 AGTCGCTTTCTGATAGATTAGGG 57.539 43.478 0.00 0.00 0.00 3.53
253 254 5.010112 TGGAGTCGCTTTCTGATAGATTAGG 59.990 44.000 0.00 0.00 0.00 2.69
254 255 6.078202 TGGAGTCGCTTTCTGATAGATTAG 57.922 41.667 0.00 0.00 0.00 1.73
255 256 6.096987 AGTTGGAGTCGCTTTCTGATAGATTA 59.903 38.462 0.00 0.00 0.00 1.75
256 257 5.105146 AGTTGGAGTCGCTTTCTGATAGATT 60.105 40.000 0.00 0.00 0.00 2.40
258 259 3.764434 AGTTGGAGTCGCTTTCTGATAGA 59.236 43.478 0.00 0.00 0.00 1.98
261 262 3.409026 AAGTTGGAGTCGCTTTCTGAT 57.591 42.857 0.00 0.00 0.00 2.90
262 263 2.872245 CAAAGTTGGAGTCGCTTTCTGA 59.128 45.455 3.86 0.00 30.96 3.27
263 264 2.603173 GCAAAGTTGGAGTCGCTTTCTG 60.603 50.000 3.86 0.00 30.96 3.02
264 265 1.604278 GCAAAGTTGGAGTCGCTTTCT 59.396 47.619 3.86 0.00 30.96 2.52
266 267 1.334869 CAGCAAAGTTGGAGTCGCTTT 59.665 47.619 0.00 1.66 33.28 3.51
267 268 0.947244 CAGCAAAGTTGGAGTCGCTT 59.053 50.000 0.00 0.00 0.00 4.68
268 269 0.179045 ACAGCAAAGTTGGAGTCGCT 60.179 50.000 0.00 0.00 0.00 4.93
270 271 0.588252 CCACAGCAAAGTTGGAGTCG 59.412 55.000 0.00 0.00 0.00 4.18
273 274 0.588252 CGTCCACAGCAAAGTTGGAG 59.412 55.000 0.00 0.00 0.00 3.86
274 275 0.179234 TCGTCCACAGCAAAGTTGGA 59.821 50.000 0.00 0.00 0.00 3.53
275 276 1.021202 TTCGTCCACAGCAAAGTTGG 58.979 50.000 0.00 0.00 0.00 3.77
276 277 1.400142 TGTTCGTCCACAGCAAAGTTG 59.600 47.619 0.00 0.00 0.00 3.16
277 278 1.400494 GTGTTCGTCCACAGCAAAGTT 59.600 47.619 2.99 0.00 35.38 2.66
278 279 1.014352 GTGTTCGTCCACAGCAAAGT 58.986 50.000 2.99 0.00 35.38 2.66
280 281 1.433053 CGGTGTTCGTCCACAGCAAA 61.433 55.000 12.46 0.00 43.99 3.68
282 283 2.279851 CGGTGTTCGTCCACAGCA 60.280 61.111 12.46 0.00 43.99 4.41
283 284 2.028484 TCGGTGTTCGTCCACAGC 59.972 61.111 8.92 6.84 41.01 4.40
284 285 1.663702 GGTCGGTGTTCGTCCACAG 60.664 63.158 8.92 5.57 44.46 3.66
285 286 2.418356 GGTCGGTGTTCGTCCACA 59.582 61.111 8.92 0.00 44.46 4.17
287 288 2.906388 TCGGTCGGTGTTCGTCCA 60.906 61.111 0.00 0.00 45.14 4.02
288 289 2.429739 GTCGGTCGGTGTTCGTCC 60.430 66.667 0.00 0.00 42.27 4.79
289 290 2.429739 GGTCGGTCGGTGTTCGTC 60.430 66.667 0.00 0.00 40.32 4.20
290 291 3.982241 GGGTCGGTCGGTGTTCGT 61.982 66.667 0.00 0.00 40.32 3.85
291 292 3.621892 GAGGGTCGGTCGGTGTTCG 62.622 68.421 0.00 0.00 40.90 3.95
292 293 2.260743 GAGGGTCGGTCGGTGTTC 59.739 66.667 0.00 0.00 0.00 3.18
293 294 2.522436 TGAGGGTCGGTCGGTGTT 60.522 61.111 0.00 0.00 0.00 3.32
294 295 3.300765 GTGAGGGTCGGTCGGTGT 61.301 66.667 0.00 0.00 0.00 4.16
302 303 4.796231 CCTTCGCGGTGAGGGTCG 62.796 72.222 6.13 0.00 38.99 4.79
311 312 1.193874 GTTTCTACACAACCTTCGCGG 59.806 52.381 6.13 0.00 39.35 6.46
312 313 1.862201 TGTTTCTACACAACCTTCGCG 59.138 47.619 0.00 0.00 0.00 5.87
324 325 5.597813 CACAGGTCTTCATGTGTTTCTAC 57.402 43.478 5.11 0.00 46.80 2.59
345 346 1.304381 GGGTGGCTGATTTCTGGCA 60.304 57.895 9.18 9.18 45.29 4.92
346 347 1.304381 TGGGTGGCTGATTTCTGGC 60.304 57.895 4.38 4.38 40.05 4.85
347 348 1.308069 CGTGGGTGGCTGATTTCTGG 61.308 60.000 0.00 0.00 0.00 3.86
348 349 0.606401 ACGTGGGTGGCTGATTTCTG 60.606 55.000 0.00 0.00 0.00 3.02
349 350 0.321653 GACGTGGGTGGCTGATTTCT 60.322 55.000 0.00 0.00 0.00 2.52
350 351 1.635663 CGACGTGGGTGGCTGATTTC 61.636 60.000 0.00 0.00 0.00 2.17
351 352 1.671054 CGACGTGGGTGGCTGATTT 60.671 57.895 0.00 0.00 0.00 2.17
352 353 2.047274 CGACGTGGGTGGCTGATT 60.047 61.111 0.00 0.00 0.00 2.57
353 354 2.994995 TCGACGTGGGTGGCTGAT 60.995 61.111 0.00 0.00 0.00 2.90
354 355 3.680786 CTCGACGTGGGTGGCTGA 61.681 66.667 0.00 0.00 0.00 4.26
370 371 4.421515 ATTGAGCTGCGCTGCCCT 62.422 61.111 32.06 17.56 39.88 5.19
371 372 3.885521 GATTGAGCTGCGCTGCCC 61.886 66.667 32.06 23.54 39.88 5.36
372 373 4.233635 CGATTGAGCTGCGCTGCC 62.234 66.667 32.06 23.66 39.88 4.85
373 374 4.233635 CCGATTGAGCTGCGCTGC 62.234 66.667 29.38 29.38 39.88 5.25
377 378 2.106938 TAGCCCGATTGAGCTGCG 59.893 61.111 0.00 0.00 40.28 5.18
378 379 2.240500 CGTAGCCCGATTGAGCTGC 61.241 63.158 0.00 0.00 40.28 5.25
380 381 3.935024 TCGTAGCCCGATTGAGCT 58.065 55.556 0.00 0.00 41.60 4.09
387 388 6.319422 GTTCAGTCGAATATCGTAGCCCGA 62.319 50.000 0.00 0.00 41.01 5.14
388 389 1.534163 TCAGTCGAATATCGTAGCCCG 59.466 52.381 0.00 0.00 41.35 6.13
389 390 3.243301 TGTTCAGTCGAATATCGTAGCCC 60.243 47.826 0.00 0.00 41.35 5.19
391 392 3.975670 CCTGTTCAGTCGAATATCGTAGC 59.024 47.826 0.00 0.00 41.35 3.58
396 397 4.806247 CAGGTTCCTGTTCAGTCGAATATC 59.194 45.833 10.40 0.00 32.61 1.63
399 400 2.872038 GCAGGTTCCTGTTCAGTCGAAT 60.872 50.000 18.42 0.00 36.52 3.34
400 401 1.540363 GCAGGTTCCTGTTCAGTCGAA 60.540 52.381 18.42 0.00 36.52 3.71
401 402 0.033504 GCAGGTTCCTGTTCAGTCGA 59.966 55.000 18.42 0.00 36.52 4.20
402 403 0.951040 GGCAGGTTCCTGTTCAGTCG 60.951 60.000 18.42 0.00 36.52 4.18
403 404 0.398318 AGGCAGGTTCCTGTTCAGTC 59.602 55.000 18.42 2.72 36.52 3.51
404 405 0.109342 CAGGCAGGTTCCTGTTCAGT 59.891 55.000 18.42 0.00 46.59 3.41
412 413 1.767759 ATATTGTGCAGGCAGGTTCC 58.232 50.000 0.00 0.00 0.00 3.62
413 414 2.618709 GGTATATTGTGCAGGCAGGTTC 59.381 50.000 0.00 0.00 0.00 3.62
414 415 2.242196 AGGTATATTGTGCAGGCAGGTT 59.758 45.455 0.00 0.00 0.00 3.50
416 417 2.105477 AGAGGTATATTGTGCAGGCAGG 59.895 50.000 0.00 0.00 0.00 4.85
417 418 3.482156 AGAGGTATATTGTGCAGGCAG 57.518 47.619 0.00 0.00 0.00 4.85
418 419 3.709141 TGTAGAGGTATATTGTGCAGGCA 59.291 43.478 0.00 0.00 0.00 4.75
419 420 4.336889 TGTAGAGGTATATTGTGCAGGC 57.663 45.455 0.00 0.00 0.00 4.85
420 421 7.671302 AGTATTGTAGAGGTATATTGTGCAGG 58.329 38.462 0.00 0.00 0.00 4.85
421 422 9.547753 AAAGTATTGTAGAGGTATATTGTGCAG 57.452 33.333 0.00 0.00 0.00 4.41
422 423 9.325198 CAAAGTATTGTAGAGGTATATTGTGCA 57.675 33.333 0.00 0.00 0.00 4.57
438 439 9.461312 AACATGTGGACATATACAAAGTATTGT 57.539 29.630 0.00 0.00 42.66 2.71
441 442 9.461312 ACAAACATGTGGACATATACAAAGTAT 57.539 29.630 0.00 0.00 34.26 2.12
442 443 8.856153 ACAAACATGTGGACATATACAAAGTA 57.144 30.769 0.00 0.00 34.26 2.24
443 444 7.759489 ACAAACATGTGGACATATACAAAGT 57.241 32.000 0.00 0.00 34.26 2.66
447 448 9.892130 TTGTATACAAACATGTGGACATATACA 57.108 29.630 15.92 16.72 32.72 2.29
451 452 8.318412 AGTCTTGTATACAAACATGTGGACATA 58.682 33.333 23.10 0.00 35.15 2.29
457 3642 7.041440 TGACCAAGTCTTGTATACAAACATGTG 60.041 37.037 18.55 15.64 35.15 3.21
531 3720 6.968904 GTGATTCATGCATTTGTGTAGTTAGG 59.031 38.462 0.00 0.00 0.00 2.69
537 3726 4.158209 CAGGGTGATTCATGCATTTGTGTA 59.842 41.667 0.00 0.00 0.00 2.90
578 3768 4.394300 CCATTAGGATTTGATCGCCTCATC 59.606 45.833 0.00 0.00 36.89 2.92
607 3797 6.440052 TTTCACCTGAAGATCCAAAGTGTGG 61.440 44.000 0.00 0.00 41.11 4.17
608 3798 3.743521 TCACCTGAAGATCCAAAGTGTG 58.256 45.455 0.00 0.00 0.00 3.82
609 3799 4.437682 TTCACCTGAAGATCCAAAGTGT 57.562 40.909 0.00 0.00 0.00 3.55
612 3826 5.012239 TCCATTTCACCTGAAGATCCAAAG 58.988 41.667 0.00 0.00 35.21 2.77
626 3840 3.888930 TCACCCTCTGTTTTCCATTTCAC 59.111 43.478 0.00 0.00 0.00 3.18
746 3961 2.616797 TTTTGCCCGTCAGCCTGTGA 62.617 55.000 0.00 0.00 0.00 3.58
750 3965 1.750778 CATATTTTTGCCCGTCAGCCT 59.249 47.619 0.00 0.00 0.00 4.58
751 3966 1.802508 GCATATTTTTGCCCGTCAGCC 60.803 52.381 0.00 0.00 36.60 4.85
775 3990 4.756458 AGCGTCTCTGCAGCCTGC 62.756 66.667 10.45 10.45 45.29 4.85
776 3991 2.776670 TTCAGCGTCTCTGCAGCCTG 62.777 60.000 9.47 9.87 42.56 4.85
777 3992 2.104572 TTTCAGCGTCTCTGCAGCCT 62.105 55.000 9.47 0.00 42.56 4.58
780 3995 0.165511 GCTTTTCAGCGTCTCTGCAG 59.834 55.000 7.63 7.63 42.56 4.41
781 3996 2.238353 GCTTTTCAGCGTCTCTGCA 58.762 52.632 0.00 0.00 42.56 4.41
791 4006 1.743958 CCTCCTGCATCAGCTTTTCAG 59.256 52.381 0.00 0.00 42.74 3.02
792 4007 1.615116 CCCTCCTGCATCAGCTTTTCA 60.615 52.381 0.00 0.00 42.74 2.69
793 4008 1.101331 CCCTCCTGCATCAGCTTTTC 58.899 55.000 0.00 0.00 42.74 2.29
794 4009 0.407139 ACCCTCCTGCATCAGCTTTT 59.593 50.000 0.00 0.00 42.74 2.27
795 4010 0.323178 CACCCTCCTGCATCAGCTTT 60.323 55.000 0.00 0.00 42.74 3.51
796 4011 1.302285 CACCCTCCTGCATCAGCTT 59.698 57.895 0.00 0.00 42.74 3.74
797 4012 2.677289 CCACCCTCCTGCATCAGCT 61.677 63.158 0.00 0.00 42.74 4.24
798 4013 2.124403 CCACCCTCCTGCATCAGC 60.124 66.667 0.00 0.00 42.57 4.26
799 4014 0.329261 TTTCCACCCTCCTGCATCAG 59.671 55.000 0.00 0.00 0.00 2.90
800 4015 0.329261 CTTTCCACCCTCCTGCATCA 59.671 55.000 0.00 0.00 0.00 3.07
801 4016 0.394899 CCTTTCCACCCTCCTGCATC 60.395 60.000 0.00 0.00 0.00 3.91
802 4017 0.846427 TCCTTTCCACCCTCCTGCAT 60.846 55.000 0.00 0.00 0.00 3.96
803 4018 1.463214 TCCTTTCCACCCTCCTGCA 60.463 57.895 0.00 0.00 0.00 4.41
804 4019 1.301293 CTCCTTTCCACCCTCCTGC 59.699 63.158 0.00 0.00 0.00 4.85
805 4020 0.547712 TCCTCCTTTCCACCCTCCTG 60.548 60.000 0.00 0.00 0.00 3.86
806 4021 0.252927 CTCCTCCTTTCCACCCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
807 4022 1.275421 CCTCCTCCTTTCCACCCTCC 61.275 65.000 0.00 0.00 0.00 4.30
808 4023 0.252742 TCCTCCTCCTTTCCACCCTC 60.253 60.000 0.00 0.00 0.00 4.30
809 4024 0.547954 GTCCTCCTCCTTTCCACCCT 60.548 60.000 0.00 0.00 0.00 4.34
810 4025 0.840722 TGTCCTCCTCCTTTCCACCC 60.841 60.000 0.00 0.00 0.00 4.61
823 4038 1.217779 GTGCTGCTCCTCTGTCCTC 59.782 63.158 0.00 0.00 0.00 3.71
886 4151 3.427909 CGTGTCCAACATAGCTACGGTTA 60.428 47.826 11.17 0.00 0.00 2.85
1021 4291 1.004745 ACTGGGTAGTGATTGCAAGGG 59.995 52.381 4.94 0.00 35.34 3.95
1045 4315 7.273815 GTGCTAGCTAGTACTACTTGTTTCTTG 59.726 40.741 28.52 0.00 36.23 3.02
1053 4323 5.991861 TCTCAGTGCTAGCTAGTACTACTT 58.008 41.667 34.82 17.40 45.50 2.24
1105 4382 2.705220 CGTGCACGCCATGATCTG 59.295 61.111 28.16 0.00 31.89 2.90
1243 4520 2.357517 CAGGGTGACTGTGTCCGC 60.358 66.667 0.00 0.00 42.42 5.54
1251 4528 3.958860 GGTGGCAGCAGGGTGACT 61.959 66.667 12.58 0.00 0.00 3.41
1509 4786 2.263895 TATGGGTGGTGGCTACTTCT 57.736 50.000 0.00 0.00 0.00 2.85
1511 4788 4.017499 AGAAAATATGGGTGGTGGCTACTT 60.017 41.667 0.00 0.00 0.00 2.24
1515 4792 3.473113 AAGAAAATATGGGTGGTGGCT 57.527 42.857 0.00 0.00 0.00 4.75
1521 4798 5.750067 GCTTGCATGTAAGAAAATATGGGTG 59.250 40.000 25.50 0.00 0.00 4.61
1543 4820 5.705905 GGAGGTGTAAAGAAAATACAGTGCT 59.294 40.000 0.00 0.00 34.14 4.40
1562 4839 7.643123 AGTTCCATGTAAGAAAATATGGAGGT 58.357 34.615 0.00 0.00 46.87 3.85
1614 4894 3.306973 CACGTGACATATGTGGTAAGCAG 59.693 47.826 14.43 1.39 41.62 4.24
1738 5018 7.042119 CACGAGTATGTGCAATGGAACAACT 62.042 44.000 0.00 0.00 35.76 3.16
1757 5037 6.258727 AGGCAAAGATCACATATAAACACGAG 59.741 38.462 0.00 0.00 0.00 4.18
1796 5078 7.587757 CCTTTCGAAAAACTAAACATCTGTCAG 59.412 37.037 12.41 0.00 0.00 3.51
1829 5112 6.023357 AGTAGGTAGAGGTCGAAAGTTTTC 57.977 41.667 0.00 0.00 0.00 2.29
1877 5160 7.865385 TGCCATGTTGTCTTGTTTCTATTTTAC 59.135 33.333 0.00 0.00 0.00 2.01
1903 5186 6.824553 TCTCTGCTTGCAAGTAGATGATATT 58.175 36.000 36.93 0.00 44.82 1.28
1927 5210 3.553508 GCCATTGTTGTCTTCTGCATGTT 60.554 43.478 0.00 0.00 0.00 2.71
1933 5216 4.216902 TGATTCTGCCATTGTTGTCTTCTG 59.783 41.667 0.00 0.00 0.00 3.02
1976 5261 4.449743 TGCCGACTTAGTTGTATGTGTTTC 59.550 41.667 0.00 0.00 0.00 2.78
2070 5355 7.652300 TCATCTATAACGAAAATTCCCATCG 57.348 36.000 0.00 0.00 42.05 3.84
2094 5379 8.431910 TGTTCTAGTCTAATAGTTGAACCCTT 57.568 34.615 0.00 0.00 40.47 3.95
2100 5385 8.959705 TCTCGATGTTCTAGTCTAATAGTTGA 57.040 34.615 0.00 0.00 0.00 3.18
2141 5426 8.076910 TGCTATTTCCATCATTTTATGGTTGT 57.923 30.769 2.98 0.00 45.67 3.32
2168 5453 1.598882 TTGTGCTTGATACGGCAACA 58.401 45.000 0.00 0.00 40.26 3.33
2198 5483 6.371809 TCTTTTTATTGTGGGATCGTATGC 57.628 37.500 0.00 0.00 0.00 3.14
2240 5525 7.177568 TCCTGACTATGCTTAATACTGGATCTC 59.822 40.741 0.00 0.00 0.00 2.75
2241 5526 7.013220 TCCTGACTATGCTTAATACTGGATCT 58.987 38.462 0.00 0.00 0.00 2.75
2255 5540 5.162075 GGTTCGTGTATATCCTGACTATGC 58.838 45.833 0.00 0.00 0.00 3.14
2263 5548 6.322969 TGTTGATACTGGTTCGTGTATATCCT 59.677 38.462 0.00 0.00 30.49 3.24
2276 5561 6.100279 ACATATCTCCACATGTTGATACTGGT 59.900 38.462 12.41 9.65 31.32 4.00
2278 5563 6.426025 CCACATATCTCCACATGTTGATACTG 59.574 42.308 12.41 13.03 33.12 2.74
2279 5564 6.100279 ACCACATATCTCCACATGTTGATACT 59.900 38.462 12.41 0.37 33.12 2.12
2280 5565 6.291377 ACCACATATCTCCACATGTTGATAC 58.709 40.000 12.41 0.00 33.12 2.24
2281 5566 6.499106 ACCACATATCTCCACATGTTGATA 57.501 37.500 0.00 5.58 33.12 2.15
2282 5567 5.378230 ACCACATATCTCCACATGTTGAT 57.622 39.130 0.00 3.35 33.12 2.57
2283 5568 4.842531 ACCACATATCTCCACATGTTGA 57.157 40.909 0.00 0.00 33.12 3.18
2301 5586 4.512198 CGTATCTGGTTGTTGTTTGTACCA 59.488 41.667 0.00 0.00 38.29 3.25
2303 5588 5.910637 TCGTATCTGGTTGTTGTTTGTAC 57.089 39.130 0.00 0.00 0.00 2.90
2306 5591 8.849490 CAATTAATCGTATCTGGTTGTTGTTTG 58.151 33.333 0.00 0.00 0.00 2.93
2338 5623 5.845103 TGATGGTGTCAACTAGTCGTAAAA 58.155 37.500 0.00 0.00 32.78 1.52
2344 5629 8.730680 ACAATATTTTGATGGTGTCAACTAGTC 58.269 33.333 0.00 0.00 46.14 2.59
2346 5631 9.988350 GTACAATATTTTGATGGTGTCAACTAG 57.012 33.333 2.69 0.00 46.14 2.57
2352 5637 7.645340 GCAGATGTACAATATTTTGATGGTGTC 59.355 37.037 0.00 0.00 36.64 3.67
2379 5664 1.302383 TTCCGCTATGTTGGTTGGCG 61.302 55.000 0.00 0.00 44.48 5.69
2380 5665 0.885196 TTTCCGCTATGTTGGTTGGC 59.115 50.000 0.00 0.00 0.00 4.52
2381 5666 2.556622 ACTTTTCCGCTATGTTGGTTGG 59.443 45.455 0.00 0.00 0.00 3.77
2382 5667 3.915437 ACTTTTCCGCTATGTTGGTTG 57.085 42.857 0.00 0.00 0.00 3.77
2383 5668 4.007659 CCTACTTTTCCGCTATGTTGGTT 58.992 43.478 0.00 0.00 0.00 3.67
2384 5669 3.262405 TCCTACTTTTCCGCTATGTTGGT 59.738 43.478 0.00 0.00 0.00 3.67
2385 5670 3.869065 TCCTACTTTTCCGCTATGTTGG 58.131 45.455 0.00 0.00 0.00 3.77
2386 5671 4.209288 CGATCCTACTTTTCCGCTATGTTG 59.791 45.833 0.00 0.00 0.00 3.33
2387 5672 4.369182 CGATCCTACTTTTCCGCTATGTT 58.631 43.478 0.00 0.00 0.00 2.71
2388 5673 3.799232 GCGATCCTACTTTTCCGCTATGT 60.799 47.826 0.00 0.00 39.57 2.29
2389 5674 2.731976 GCGATCCTACTTTTCCGCTATG 59.268 50.000 0.00 0.00 39.57 2.23
2390 5675 2.364324 TGCGATCCTACTTTTCCGCTAT 59.636 45.455 0.00 0.00 42.64 2.97
2391 5676 1.752498 TGCGATCCTACTTTTCCGCTA 59.248 47.619 0.00 0.00 42.64 4.26
2392 5677 0.535335 TGCGATCCTACTTTTCCGCT 59.465 50.000 0.00 0.00 42.64 5.52
2393 5678 0.651031 GTGCGATCCTACTTTTCCGC 59.349 55.000 0.00 0.00 42.52 5.54
2394 5679 1.927174 CTGTGCGATCCTACTTTTCCG 59.073 52.381 0.00 0.00 0.00 4.30
2395 5680 2.280628 CCTGTGCGATCCTACTTTTCC 58.719 52.381 0.00 0.00 0.00 3.13
2396 5681 1.666189 GCCTGTGCGATCCTACTTTTC 59.334 52.381 0.00 0.00 0.00 2.29
2397 5682 1.739067 GCCTGTGCGATCCTACTTTT 58.261 50.000 0.00 0.00 0.00 2.27
2398 5683 3.460648 GCCTGTGCGATCCTACTTT 57.539 52.632 0.00 0.00 0.00 2.66
2409 5694 4.767255 CTCCCTGACCGCCTGTGC 62.767 72.222 0.00 0.00 0.00 4.57
2410 5695 4.087892 CCTCCCTGACCGCCTGTG 62.088 72.222 0.00 0.00 0.00 3.66
2417 5702 3.827898 CTCGTCGCCTCCCTGACC 61.828 72.222 0.00 0.00 0.00 4.02
2418 5703 3.827898 CCTCGTCGCCTCCCTGAC 61.828 72.222 0.00 0.00 0.00 3.51
2421 5706 4.698625 AACCCTCGTCGCCTCCCT 62.699 66.667 0.00 0.00 0.00 4.20
2422 5707 4.144703 GAACCCTCGTCGCCTCCC 62.145 72.222 0.00 0.00 0.00 4.30
2423 5708 4.144703 GGAACCCTCGTCGCCTCC 62.145 72.222 0.00 0.00 0.00 4.30
2467 5752 1.378124 CCGACGGAGAGAGAGGGAAC 61.378 65.000 8.64 0.00 0.00 3.62
2468 5753 1.077644 CCGACGGAGAGAGAGGGAA 60.078 63.158 8.64 0.00 0.00 3.97
2469 5754 2.590645 CCGACGGAGAGAGAGGGA 59.409 66.667 8.64 0.00 0.00 4.20
2470 5755 3.213402 GCCGACGGAGAGAGAGGG 61.213 72.222 20.50 0.00 0.00 4.30
2471 5756 3.213402 GGCCGACGGAGAGAGAGG 61.213 72.222 20.50 0.00 0.00 3.69
2472 5757 3.578272 CGGCCGACGGAGAGAGAG 61.578 72.222 24.07 0.00 39.42 3.20
2497 5782 4.410033 TTCCCCCTCCCTCCCGTC 62.410 72.222 0.00 0.00 0.00 4.79
2498 5783 4.735599 GTTCCCCCTCCCTCCCGT 62.736 72.222 0.00 0.00 0.00 5.28
2500 5785 4.040198 AGGTTCCCCCTCCCTCCC 62.040 72.222 0.00 0.00 40.71 4.30
2508 5793 3.400054 CAGACCCGAGGTTCCCCC 61.400 72.222 0.00 0.00 35.25 5.40
2509 5794 0.906282 TAACAGACCCGAGGTTCCCC 60.906 60.000 0.00 0.00 35.25 4.81
2510 5795 0.535797 CTAACAGACCCGAGGTTCCC 59.464 60.000 0.00 0.00 35.25 3.97
2511 5796 0.108281 GCTAACAGACCCGAGGTTCC 60.108 60.000 0.00 0.00 35.25 3.62
2512 5797 0.896226 AGCTAACAGACCCGAGGTTC 59.104 55.000 0.00 0.00 35.25 3.62
2513 5798 2.100989 CTAGCTAACAGACCCGAGGTT 58.899 52.381 0.00 0.00 35.25 3.50
2514 5799 1.685491 CCTAGCTAACAGACCCGAGGT 60.685 57.143 0.00 0.00 39.44 3.85
2515 5800 1.033574 CCTAGCTAACAGACCCGAGG 58.966 60.000 0.00 0.00 0.00 4.63
2516 5801 1.405821 CACCTAGCTAACAGACCCGAG 59.594 57.143 0.00 0.00 0.00 4.63
2517 5802 1.272313 ACACCTAGCTAACAGACCCGA 60.272 52.381 0.00 0.00 0.00 5.14
2518 5803 1.135083 CACACCTAGCTAACAGACCCG 60.135 57.143 0.00 0.00 0.00 5.28
2519 5804 1.900486 ACACACCTAGCTAACAGACCC 59.100 52.381 0.00 0.00 0.00 4.46
2520 5805 2.299297 ACACACACCTAGCTAACAGACC 59.701 50.000 0.00 0.00 0.00 3.85
2521 5806 3.243771 ACACACACACCTAGCTAACAGAC 60.244 47.826 0.00 0.00 0.00 3.51
2522 5807 2.963101 ACACACACACCTAGCTAACAGA 59.037 45.455 0.00 0.00 0.00 3.41
2523 5808 3.059884 CACACACACACCTAGCTAACAG 58.940 50.000 0.00 0.00 0.00 3.16
2524 5809 2.696187 TCACACACACACCTAGCTAACA 59.304 45.455 0.00 0.00 0.00 2.41
2525 5810 3.380479 TCACACACACACCTAGCTAAC 57.620 47.619 0.00 0.00 0.00 2.34
2526 5811 4.159693 CCTATCACACACACACCTAGCTAA 59.840 45.833 0.00 0.00 0.00 3.09
2527 5812 3.699538 CCTATCACACACACACCTAGCTA 59.300 47.826 0.00 0.00 0.00 3.32
2528 5813 2.497675 CCTATCACACACACACCTAGCT 59.502 50.000 0.00 0.00 0.00 3.32
2529 5814 2.418746 CCCTATCACACACACACCTAGC 60.419 54.545 0.00 0.00 0.00 3.42
2530 5815 2.832129 ACCCTATCACACACACACCTAG 59.168 50.000 0.00 0.00 0.00 3.02
2531 5816 2.897350 ACCCTATCACACACACACCTA 58.103 47.619 0.00 0.00 0.00 3.08
2532 5817 1.729586 ACCCTATCACACACACACCT 58.270 50.000 0.00 0.00 0.00 4.00
2533 5818 2.561478 AACCCTATCACACACACACC 57.439 50.000 0.00 0.00 0.00 4.16
2534 5819 4.000988 CCTTAACCCTATCACACACACAC 58.999 47.826 0.00 0.00 0.00 3.82
2535 5820 3.649023 ACCTTAACCCTATCACACACACA 59.351 43.478 0.00 0.00 0.00 3.72
2536 5821 4.281898 ACCTTAACCCTATCACACACAC 57.718 45.455 0.00 0.00 0.00 3.82
2537 5822 4.348461 TCAACCTTAACCCTATCACACACA 59.652 41.667 0.00 0.00 0.00 3.72
2538 5823 4.901868 TCAACCTTAACCCTATCACACAC 58.098 43.478 0.00 0.00 0.00 3.82
2539 5824 4.019681 CCTCAACCTTAACCCTATCACACA 60.020 45.833 0.00 0.00 0.00 3.72
2540 5825 4.514401 CCTCAACCTTAACCCTATCACAC 58.486 47.826 0.00 0.00 0.00 3.82
2541 5826 3.521937 CCCTCAACCTTAACCCTATCACA 59.478 47.826 0.00 0.00 0.00 3.58
2542 5827 3.778629 TCCCTCAACCTTAACCCTATCAC 59.221 47.826 0.00 0.00 0.00 3.06
2543 5828 4.037927 CTCCCTCAACCTTAACCCTATCA 58.962 47.826 0.00 0.00 0.00 2.15
2544 5829 4.101274 GTCTCCCTCAACCTTAACCCTATC 59.899 50.000 0.00 0.00 0.00 2.08
2545 5830 4.038633 GTCTCCCTCAACCTTAACCCTAT 58.961 47.826 0.00 0.00 0.00 2.57
2546 5831 3.447950 GTCTCCCTCAACCTTAACCCTA 58.552 50.000 0.00 0.00 0.00 3.53
2547 5832 2.267192 GTCTCCCTCAACCTTAACCCT 58.733 52.381 0.00 0.00 0.00 4.34
2548 5833 1.066358 CGTCTCCCTCAACCTTAACCC 60.066 57.143 0.00 0.00 0.00 4.11
2549 5834 1.675116 GCGTCTCCCTCAACCTTAACC 60.675 57.143 0.00 0.00 0.00 2.85
2550 5835 1.275573 AGCGTCTCCCTCAACCTTAAC 59.724 52.381 0.00 0.00 0.00 2.01
2551 5836 1.275291 CAGCGTCTCCCTCAACCTTAA 59.725 52.381 0.00 0.00 0.00 1.85
2552 5837 0.895530 CAGCGTCTCCCTCAACCTTA 59.104 55.000 0.00 0.00 0.00 2.69
2553 5838 1.674057 CAGCGTCTCCCTCAACCTT 59.326 57.895 0.00 0.00 0.00 3.50
2554 5839 2.948720 GCAGCGTCTCCCTCAACCT 61.949 63.158 0.00 0.00 0.00 3.50
2555 5840 2.435059 GCAGCGTCTCCCTCAACC 60.435 66.667 0.00 0.00 0.00 3.77
2556 5841 2.435059 GGCAGCGTCTCCCTCAAC 60.435 66.667 0.00 0.00 0.00 3.18
2557 5842 4.069232 CGGCAGCGTCTCCCTCAA 62.069 66.667 0.00 0.00 0.00 3.02
2559 5844 4.200283 CTCGGCAGCGTCTCCCTC 62.200 72.222 0.00 0.00 0.00 4.30
2579 5864 3.995669 CGTGACACCACCGCAACG 61.996 66.667 0.00 0.00 40.12 4.10
2580 5865 2.877974 GACGTGACACCACCGCAAC 61.878 63.158 0.00 0.00 40.12 4.17
2581 5866 2.586635 GACGTGACACCACCGCAA 60.587 61.111 0.00 0.00 40.12 4.85
2582 5867 4.934942 CGACGTGACACCACCGCA 62.935 66.667 0.00 0.00 40.12 5.69
2584 5869 2.758770 ATTCCGACGTGACACCACCG 62.759 60.000 0.00 1.25 40.12 4.94
2585 5870 0.244450 TATTCCGACGTGACACCACC 59.756 55.000 0.00 0.00 40.12 4.61
2586 5871 1.990563 CTTATTCCGACGTGACACCAC 59.009 52.381 0.00 0.00 39.86 4.16
2587 5872 1.614903 ACTTATTCCGACGTGACACCA 59.385 47.619 0.00 0.00 0.00 4.17
2588 5873 2.358939 ACTTATTCCGACGTGACACC 57.641 50.000 0.00 0.00 0.00 4.16
2589 5874 3.985925 AGAAACTTATTCCGACGTGACAC 59.014 43.478 0.00 0.00 0.00 3.67
2590 5875 4.232221 GAGAAACTTATTCCGACGTGACA 58.768 43.478 0.00 0.00 0.00 3.58
2591 5876 3.611549 GGAGAAACTTATTCCGACGTGAC 59.388 47.826 0.00 0.00 0.00 3.67
2592 5877 3.841643 GGAGAAACTTATTCCGACGTGA 58.158 45.455 0.00 0.00 0.00 4.35
2599 5884 3.276857 GGAACCCGGAGAAACTTATTCC 58.723 50.000 0.73 0.00 0.00 3.01
2600 5885 3.946606 TGGAACCCGGAGAAACTTATTC 58.053 45.455 0.73 0.00 0.00 1.75
2601 5886 4.586306 ATGGAACCCGGAGAAACTTATT 57.414 40.909 0.73 0.00 0.00 1.40
2602 5887 4.524053 GAATGGAACCCGGAGAAACTTAT 58.476 43.478 0.73 0.00 0.00 1.73
2603 5888 3.618019 CGAATGGAACCCGGAGAAACTTA 60.618 47.826 0.73 0.00 0.00 2.24
2604 5889 2.791655 GAATGGAACCCGGAGAAACTT 58.208 47.619 0.73 0.00 0.00 2.66
2605 5890 1.338769 CGAATGGAACCCGGAGAAACT 60.339 52.381 0.73 0.00 0.00 2.66
2606 5891 1.084289 CGAATGGAACCCGGAGAAAC 58.916 55.000 0.73 0.00 0.00 2.78
2607 5892 0.675522 GCGAATGGAACCCGGAGAAA 60.676 55.000 0.73 0.00 0.00 2.52
2608 5893 1.078708 GCGAATGGAACCCGGAGAA 60.079 57.895 0.73 0.00 0.00 2.87
2609 5894 2.582436 GCGAATGGAACCCGGAGA 59.418 61.111 0.73 0.00 0.00 3.71
2610 5895 2.890474 CGCGAATGGAACCCGGAG 60.890 66.667 0.73 0.00 0.00 4.63
2611 5896 4.460683 CCGCGAATGGAACCCGGA 62.461 66.667 8.23 0.00 41.34 5.14
2615 5900 3.508840 CTGGCCGCGAATGGAACC 61.509 66.667 8.23 0.00 0.00 3.62
2616 5901 3.508840 CCTGGCCGCGAATGGAAC 61.509 66.667 8.23 0.00 0.00 3.62
2629 5914 3.752339 GGCAAAAGCCTCGCCTGG 61.752 66.667 0.00 0.00 42.78 4.45
2632 5917 2.568612 GAAGGCAAAAGCCTCGCC 59.431 61.111 9.77 0.00 46.62 5.54
2633 5918 2.176792 CGAAGGCAAAAGCCTCGC 59.823 61.111 9.77 4.55 39.63 5.03
2634 5919 0.951040 AGACGAAGGCAAAAGCCTCG 60.951 55.000 19.31 19.31 39.63 4.63
2635 5920 2.003301 CTAGACGAAGGCAAAAGCCTC 58.997 52.381 9.77 3.07 39.63 4.70
2636 5921 1.339151 CCTAGACGAAGGCAAAAGCCT 60.339 52.381 2.59 2.59 42.86 4.58
2637 5922 1.087501 CCTAGACGAAGGCAAAAGCC 58.912 55.000 0.00 0.00 0.00 4.35
2638 5923 2.003301 CTCCTAGACGAAGGCAAAAGC 58.997 52.381 0.00 0.00 36.51 3.51
2639 5924 2.003301 GCTCCTAGACGAAGGCAAAAG 58.997 52.381 0.00 0.00 36.51 2.27
2640 5925 1.338769 GGCTCCTAGACGAAGGCAAAA 60.339 52.381 0.00 0.00 36.51 2.44
2641 5926 0.249398 GGCTCCTAGACGAAGGCAAA 59.751 55.000 0.00 0.00 36.51 3.68
2642 5927 0.902984 TGGCTCCTAGACGAAGGCAA 60.903 55.000 7.75 0.00 41.91 4.52
2643 5928 1.304962 TGGCTCCTAGACGAAGGCA 60.305 57.895 0.00 0.00 42.53 4.75
2644 5929 1.439644 CTGGCTCCTAGACGAAGGC 59.560 63.158 0.00 0.00 36.51 4.35
2645 5930 1.439644 GCTGGCTCCTAGACGAAGG 59.560 63.158 0.00 0.00 38.06 3.46
2646 5931 1.064946 CGCTGGCTCCTAGACGAAG 59.935 63.158 0.00 0.00 0.00 3.79
2647 5932 2.415608 CCGCTGGCTCCTAGACGAA 61.416 63.158 0.00 0.00 0.00 3.85
2648 5933 2.829003 CCGCTGGCTCCTAGACGA 60.829 66.667 0.00 0.00 0.00 4.20
2649 5934 2.829003 TCCGCTGGCTCCTAGACG 60.829 66.667 0.00 0.00 0.00 4.18
2650 5935 1.324005 AACTCCGCTGGCTCCTAGAC 61.324 60.000 0.00 0.00 0.00 2.59
2651 5936 1.000486 AACTCCGCTGGCTCCTAGA 60.000 57.895 0.00 0.00 0.00 2.43
2652 5937 1.142748 CAACTCCGCTGGCTCCTAG 59.857 63.158 0.00 0.00 0.00 3.02
2653 5938 2.359169 CCAACTCCGCTGGCTCCTA 61.359 63.158 0.00 0.00 0.00 2.94
2654 5939 3.710722 CCAACTCCGCTGGCTCCT 61.711 66.667 0.00 0.00 0.00 3.69
2655 5940 4.785453 CCCAACTCCGCTGGCTCC 62.785 72.222 0.00 0.00 32.10 4.70
2656 5941 4.785453 CCCCAACTCCGCTGGCTC 62.785 72.222 0.00 0.00 32.10 4.70
2658 5943 4.115199 ATCCCCAACTCCGCTGGC 62.115 66.667 0.00 0.00 32.10 4.85
2659 5944 2.190578 GATCCCCAACTCCGCTGG 59.809 66.667 0.00 0.00 0.00 4.85
2660 5945 2.190578 GGATCCCCAACTCCGCTG 59.809 66.667 0.00 0.00 0.00 5.18
2661 5946 3.090532 GGGATCCCCAACTCCGCT 61.091 66.667 21.42 0.00 44.65 5.52
2671 5956 4.855072 ACGAGACCCGGGGATCCC 62.855 72.222 27.92 23.95 43.93 3.85
2672 5957 3.225061 GACGAGACCCGGGGATCC 61.225 72.222 27.92 10.97 43.93 3.36
2673 5958 3.593794 CGACGAGACCCGGGGATC 61.594 72.222 27.92 20.77 43.93 3.36
2674 5959 4.119363 TCGACGAGACCCGGGGAT 62.119 66.667 27.92 13.32 43.93 3.85
2675 5960 4.790962 CTCGACGAGACCCGGGGA 62.791 72.222 27.92 9.48 43.93 4.81
2678 5963 3.507009 GACCTCGACGAGACCCGG 61.507 72.222 26.11 12.30 43.93 5.73
2679 5964 3.862402 CGACCTCGACGAGACCCG 61.862 72.222 26.11 19.61 43.02 5.28
2680 5965 4.176851 GCGACCTCGACGAGACCC 62.177 72.222 26.11 12.67 43.02 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.