Multiple sequence alignment - TraesCS5A01G417000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G417000 chr5A 100.000 4023 0 0 1 4023 605236749 605232727 0.000000e+00 7430.0
1 TraesCS5A01G417000 chr5A 89.474 57 6 0 655 711 670269929 670269985 5.580000e-09 73.1
2 TraesCS5A01G417000 chr5B 90.700 3344 194 58 727 4023 594925316 594922043 0.000000e+00 4344.0
3 TraesCS5A01G417000 chr5D 87.846 2600 187 61 726 3288 483720434 483717927 0.000000e+00 2931.0
4 TraesCS5A01G417000 chr5D 84.707 752 61 18 3302 4023 483717852 483717125 0.000000e+00 702.0
5 TraesCS5A01G417000 chr5D 89.683 126 13 0 20 145 483721055 483720930 1.160000e-35 161.0
6 TraesCS5A01G417000 chr5D 82.178 101 10 7 230 327 483720792 483720887 3.330000e-11 80.5
7 TraesCS5A01G417000 chr7D 82.852 1178 171 25 1549 2715 215155419 215154262 0.000000e+00 1027.0
8 TraesCS5A01G417000 chr7D 83.182 220 25 9 3806 4023 289882463 289882254 1.480000e-44 191.0
9 TraesCS5A01G417000 chr7D 87.879 66 7 1 650 714 124625038 124625103 4.310000e-10 76.8
10 TraesCS5A01G417000 chr7B 82.162 185 31 1 391 573 201435625 201435809 1.500000e-34 158.0
11 TraesCS5A01G417000 chr7B 78.571 196 39 2 390 583 230350537 230350731 4.220000e-25 126.0
12 TraesCS5A01G417000 chr7B 88.525 61 7 0 654 714 131183319 131183259 1.550000e-09 75.0
13 TraesCS5A01G417000 chr7B 93.750 48 3 0 655 702 551488113 551488160 5.580000e-09 73.1
14 TraesCS5A01G417000 chr7B 94.595 37 0 1 586 620 683417338 683417302 5.620000e-04 56.5
15 TraesCS5A01G417000 chr1B 92.308 65 3 2 648 712 184770253 184770315 1.540000e-14 91.6
16 TraesCS5A01G417000 chr1B 89.474 57 6 0 655 711 18112405 18112461 5.580000e-09 73.1
17 TraesCS5A01G417000 chr2B 92.857 56 3 1 646 700 47637874 47637819 3.330000e-11 80.5
18 TraesCS5A01G417000 chr2B 88.333 60 7 0 655 714 383068785 383068726 5.580000e-09 73.1
19 TraesCS5A01G417000 chr2A 88.333 60 6 1 655 714 55949898 55949956 2.010000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G417000 chr5A 605232727 605236749 4022 True 7430.000000 7430 100.000 1 4023 1 chr5A.!!$R1 4022
1 TraesCS5A01G417000 chr5B 594922043 594925316 3273 True 4344.000000 4344 90.700 727 4023 1 chr5B.!!$R1 3296
2 TraesCS5A01G417000 chr5D 483717125 483721055 3930 True 1264.666667 2931 87.412 20 4023 3 chr5D.!!$R1 4003
3 TraesCS5A01G417000 chr7D 215154262 215155419 1157 True 1027.000000 1027 82.852 1549 2715 1 chr7D.!!$R1 1166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 643 0.036388 CTTGAAACTGAGGCGGGCTA 60.036 55.0 3.20 0.0 0.00 3.93 F
463 703 0.307453 GCAAACACGCTGATGTGACA 59.693 50.0 7.36 0.0 42.55 3.58 F
1291 1550 0.600255 ACGAGTTTGTGAAGAGCGGG 60.600 55.0 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 1757 0.179100 AGACGCAACCGATGATCAGG 60.179 55.0 0.09 0.0 38.29 3.86 R
1877 2144 0.321122 GACACAAGTCAGGGAGGCAG 60.321 60.0 0.00 0.0 44.34 4.85 R
3057 3350 0.577269 GATTCTCCCGTCGAAATGCG 59.423 55.0 0.00 0.0 42.69 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.895232 TCCTTGCTCACCTCTCATAAC 57.105 47.619 0.00 0.00 0.00 1.89
21 22 3.173151 TCCTTGCTCACCTCTCATAACA 58.827 45.455 0.00 0.00 0.00 2.41
22 23 3.196469 TCCTTGCTCACCTCTCATAACAG 59.804 47.826 0.00 0.00 0.00 3.16
23 24 2.680312 TGCTCACCTCTCATAACAGC 57.320 50.000 0.00 0.00 0.00 4.40
36 37 3.118884 TCATAACAGCGGTTTCTAGGGTC 60.119 47.826 7.73 0.00 38.45 4.46
38 39 1.221021 CAGCGGTTTCTAGGGTCCC 59.779 63.158 0.00 0.00 0.00 4.46
39 40 1.229400 AGCGGTTTCTAGGGTCCCA 60.229 57.895 11.55 0.00 0.00 4.37
49 50 3.189606 TCTAGGGTCCCATGATGTTGTT 58.810 45.455 11.55 0.00 0.00 2.83
51 52 1.710244 AGGGTCCCATGATGTTGTTGA 59.290 47.619 11.55 0.00 0.00 3.18
63 64 1.032014 GTTGTTGACCATGTGGCAGT 58.968 50.000 0.00 0.00 39.32 4.40
64 65 1.031235 TTGTTGACCATGTGGCAGTG 58.969 50.000 0.00 0.00 39.32 3.66
68 69 2.282674 ACCATGTGGCAGTGGCAG 60.283 61.111 21.25 10.87 43.71 4.85
82 83 4.743651 GCAGTGGCAGTAATGGCTAAGATA 60.744 45.833 17.94 0.00 40.72 1.98
129 130 9.204570 GAGTACAACACAAAGACATACAAGTAT 57.795 33.333 0.00 0.00 0.00 2.12
130 131 9.204570 AGTACAACACAAAGACATACAAGTATC 57.795 33.333 0.00 0.00 0.00 2.24
147 148 8.693542 ACAAGTATCAATTGCTAAAGATTTGC 57.306 30.769 0.00 0.00 0.00 3.68
148 149 7.485913 ACAAGTATCAATTGCTAAAGATTTGCG 59.514 33.333 0.00 0.00 0.00 4.85
150 151 7.412853 AGTATCAATTGCTAAAGATTTGCGAG 58.587 34.615 0.00 0.00 0.00 5.03
151 152 4.414852 TCAATTGCTAAAGATTTGCGAGC 58.585 39.130 0.00 0.00 0.00 5.03
152 153 4.082841 TCAATTGCTAAAGATTTGCGAGCA 60.083 37.500 0.00 0.00 41.23 4.26
153 154 2.900122 TGCTAAAGATTTGCGAGCAC 57.100 45.000 0.00 0.00 38.20 4.40
155 156 2.095768 TGCTAAAGATTTGCGAGCACAC 60.096 45.455 0.00 0.00 38.20 3.82
157 158 2.405892 AAAGATTTGCGAGCACACAC 57.594 45.000 0.00 0.00 0.00 3.82
158 159 1.597742 AAGATTTGCGAGCACACACT 58.402 45.000 0.00 0.00 0.00 3.55
159 160 1.597742 AGATTTGCGAGCACACACTT 58.402 45.000 0.00 0.00 0.00 3.16
160 161 1.949525 AGATTTGCGAGCACACACTTT 59.050 42.857 0.00 0.00 0.00 2.66
166 393 5.425577 TTGCGAGCACACACTTTATTTTA 57.574 34.783 0.00 0.00 0.00 1.52
172 399 5.519722 AGCACACACTTTATTTTAGCACAC 58.480 37.500 0.00 0.00 0.00 3.82
178 405 6.017109 CACACTTTATTTTAGCACACACCTCT 60.017 38.462 0.00 0.00 0.00 3.69
180 407 7.172703 ACACTTTATTTTAGCACACACCTCTAC 59.827 37.037 0.00 0.00 0.00 2.59
182 409 7.387948 ACTTTATTTTAGCACACACCTCTACAG 59.612 37.037 0.00 0.00 0.00 2.74
185 412 4.456280 TTAGCACACACCTCTACAGATG 57.544 45.455 0.00 0.00 0.00 2.90
189 416 4.467795 AGCACACACCTCTACAGATGTATT 59.532 41.667 0.00 0.00 0.00 1.89
191 418 5.643777 GCACACACCTCTACAGATGTATTTT 59.356 40.000 0.00 0.00 0.00 1.82
192 419 6.816640 GCACACACCTCTACAGATGTATTTTA 59.183 38.462 0.00 0.00 0.00 1.52
193 420 7.010552 GCACACACCTCTACAGATGTATTTTAG 59.989 40.741 0.00 0.00 0.00 1.85
195 422 8.035394 ACACACCTCTACAGATGTATTTTAGTG 58.965 37.037 10.69 10.69 0.00 2.74
196 423 8.251026 CACACCTCTACAGATGTATTTTAGTGA 58.749 37.037 12.04 0.00 0.00 3.41
214 449 9.814899 TTTTAGTGAAGAAATTTTGCAAGATGA 57.185 25.926 2.81 0.00 0.00 2.92
218 453 6.091713 GTGAAGAAATTTTGCAAGATGATGGG 59.908 38.462 2.81 0.00 0.00 4.00
219 454 6.014413 TGAAGAAATTTTGCAAGATGATGGGA 60.014 34.615 2.81 0.00 0.00 4.37
239 474 4.280677 GGGAAACTTGTTGATGTTCATCCA 59.719 41.667 9.83 0.00 29.38 3.41
240 475 5.221422 GGGAAACTTGTTGATGTTCATCCAA 60.221 40.000 9.83 7.14 29.38 3.53
274 509 9.453572 TCAGATGTCTTTCAATTTAGTTATGCT 57.546 29.630 0.00 0.00 0.00 3.79
277 512 8.693542 ATGTCTTTCAATTTAGTTATGCTTGC 57.306 30.769 0.00 0.00 0.00 4.01
278 513 7.656412 TGTCTTTCAATTTAGTTATGCTTGCA 58.344 30.769 0.00 0.00 0.00 4.08
279 514 8.140628 TGTCTTTCAATTTAGTTATGCTTGCAA 58.859 29.630 0.00 0.00 0.00 4.08
327 564 5.335897 GGTGCATTTGTGCTTGAGATTAGAA 60.336 40.000 0.00 0.00 35.49 2.10
329 566 7.415541 GGTGCATTTGTGCTTGAGATTAGAATA 60.416 37.037 0.00 0.00 35.49 1.75
331 568 8.689061 TGCATTTGTGCTTGAGATTAGAATAAT 58.311 29.630 1.86 0.00 35.49 1.28
366 606 4.977741 AACACCTAATTAACACGTGACG 57.022 40.909 25.01 2.24 0.00 4.35
367 607 3.981211 ACACCTAATTAACACGTGACGT 58.019 40.909 25.01 4.10 42.36 4.34
368 608 5.119931 ACACCTAATTAACACGTGACGTA 57.880 39.130 25.01 8.39 38.32 3.57
379 619 5.565723 ACACGTGACGTATTTTTACTGTC 57.434 39.130 25.01 0.00 38.32 3.51
397 637 3.668447 TGTCATCTCTTGAAACTGAGGC 58.332 45.455 0.00 0.00 35.70 4.70
398 638 2.670414 GTCATCTCTTGAAACTGAGGCG 59.330 50.000 0.00 0.00 35.70 5.52
399 639 2.005451 CATCTCTTGAAACTGAGGCGG 58.995 52.381 0.00 0.00 0.00 6.13
400 640 0.321671 TCTCTTGAAACTGAGGCGGG 59.678 55.000 0.00 0.00 0.00 6.13
401 641 1.301677 CTCTTGAAACTGAGGCGGGC 61.302 60.000 0.00 0.00 0.00 6.13
402 642 1.302832 CTTGAAACTGAGGCGGGCT 60.303 57.895 2.69 2.69 0.00 5.19
403 643 0.036388 CTTGAAACTGAGGCGGGCTA 60.036 55.000 3.20 0.00 0.00 3.93
404 644 0.618458 TTGAAACTGAGGCGGGCTAT 59.382 50.000 3.20 0.00 0.00 2.97
405 645 1.491668 TGAAACTGAGGCGGGCTATA 58.508 50.000 3.20 0.00 0.00 1.31
406 646 1.834896 TGAAACTGAGGCGGGCTATAA 59.165 47.619 3.20 0.00 0.00 0.98
407 647 2.438021 TGAAACTGAGGCGGGCTATAAT 59.562 45.455 3.20 0.00 0.00 1.28
408 648 2.550830 AACTGAGGCGGGCTATAATG 57.449 50.000 3.20 0.00 0.00 1.90
409 649 0.687354 ACTGAGGCGGGCTATAATGG 59.313 55.000 3.20 0.00 0.00 3.16
410 650 0.687354 CTGAGGCGGGCTATAATGGT 59.313 55.000 3.20 0.00 0.00 3.55
411 651 0.396435 TGAGGCGGGCTATAATGGTG 59.604 55.000 3.20 0.00 0.00 4.17
412 652 0.685097 GAGGCGGGCTATAATGGTGA 59.315 55.000 3.20 0.00 0.00 4.02
413 653 1.279271 GAGGCGGGCTATAATGGTGAT 59.721 52.381 3.20 0.00 0.00 3.06
414 654 2.500098 GAGGCGGGCTATAATGGTGATA 59.500 50.000 3.20 0.00 0.00 2.15
415 655 3.115390 AGGCGGGCTATAATGGTGATAT 58.885 45.455 0.56 0.00 0.00 1.63
416 656 3.134804 AGGCGGGCTATAATGGTGATATC 59.865 47.826 0.56 0.00 0.00 1.63
417 657 3.134804 GGCGGGCTATAATGGTGATATCT 59.865 47.826 3.98 0.00 0.00 1.98
418 658 4.384208 GGCGGGCTATAATGGTGATATCTT 60.384 45.833 3.98 0.00 0.00 2.40
419 659 5.163343 GGCGGGCTATAATGGTGATATCTTA 60.163 44.000 3.98 0.00 0.00 2.10
420 660 6.346096 GCGGGCTATAATGGTGATATCTTAA 58.654 40.000 3.98 0.00 0.00 1.85
421 661 6.992715 GCGGGCTATAATGGTGATATCTTAAT 59.007 38.462 3.98 0.00 0.00 1.40
422 662 7.171678 GCGGGCTATAATGGTGATATCTTAATC 59.828 40.741 3.98 0.00 0.00 1.75
423 663 7.382488 CGGGCTATAATGGTGATATCTTAATCG 59.618 40.741 3.98 0.00 0.00 3.34
424 664 8.421784 GGGCTATAATGGTGATATCTTAATCGA 58.578 37.037 3.98 0.00 0.00 3.59
425 665 9.988815 GGCTATAATGGTGATATCTTAATCGAT 57.011 33.333 3.98 0.00 0.00 3.59
431 671 9.605275 AATGGTGATATCTTAATCGATACCATG 57.395 33.333 19.31 3.70 38.36 3.66
432 672 7.041721 TGGTGATATCTTAATCGATACCATGC 58.958 38.462 0.00 0.00 29.27 4.06
433 673 7.041721 GGTGATATCTTAATCGATACCATGCA 58.958 38.462 0.00 0.00 0.00 3.96
434 674 7.010552 GGTGATATCTTAATCGATACCATGCAC 59.989 40.741 0.00 1.35 0.00 4.57
435 675 7.761704 GTGATATCTTAATCGATACCATGCACT 59.238 37.037 0.00 0.00 0.00 4.40
436 676 7.976175 TGATATCTTAATCGATACCATGCACTC 59.024 37.037 0.00 0.00 0.00 3.51
437 677 5.529581 TCTTAATCGATACCATGCACTCA 57.470 39.130 0.00 0.00 0.00 3.41
438 678 5.532557 TCTTAATCGATACCATGCACTCAG 58.467 41.667 0.00 0.00 0.00 3.35
439 679 2.827800 ATCGATACCATGCACTCAGG 57.172 50.000 0.00 0.00 0.00 3.86
440 680 1.775385 TCGATACCATGCACTCAGGA 58.225 50.000 0.00 0.00 0.00 3.86
441 681 2.107366 TCGATACCATGCACTCAGGAA 58.893 47.619 0.00 0.00 0.00 3.36
442 682 2.700371 TCGATACCATGCACTCAGGAAT 59.300 45.455 0.00 0.00 0.00 3.01
443 683 3.895041 TCGATACCATGCACTCAGGAATA 59.105 43.478 0.00 0.00 0.00 1.75
444 684 4.021981 TCGATACCATGCACTCAGGAATAG 60.022 45.833 0.00 0.00 0.00 1.73
445 685 2.338577 ACCATGCACTCAGGAATAGC 57.661 50.000 0.00 0.00 0.00 2.97
446 686 1.561076 ACCATGCACTCAGGAATAGCA 59.439 47.619 0.00 0.00 39.79 3.49
447 687 2.025981 ACCATGCACTCAGGAATAGCAA 60.026 45.455 0.00 0.00 38.85 3.91
448 688 3.018856 CCATGCACTCAGGAATAGCAAA 58.981 45.455 0.00 0.00 38.85 3.68
449 689 3.181493 CCATGCACTCAGGAATAGCAAAC 60.181 47.826 0.00 0.00 38.85 2.93
450 690 3.138884 TGCACTCAGGAATAGCAAACA 57.861 42.857 0.00 0.00 31.42 2.83
451 691 2.813754 TGCACTCAGGAATAGCAAACAC 59.186 45.455 0.00 0.00 31.42 3.32
452 692 2.159653 GCACTCAGGAATAGCAAACACG 60.160 50.000 0.00 0.00 0.00 4.49
453 693 2.076863 ACTCAGGAATAGCAAACACGC 58.923 47.619 0.00 0.00 0.00 5.34
454 694 2.289694 ACTCAGGAATAGCAAACACGCT 60.290 45.455 0.00 0.00 46.26 5.07
455 695 2.076100 TCAGGAATAGCAAACACGCTG 58.924 47.619 0.00 0.00 43.68 5.18
456 696 2.076100 CAGGAATAGCAAACACGCTGA 58.924 47.619 0.00 0.00 43.68 4.26
457 697 2.679837 CAGGAATAGCAAACACGCTGAT 59.320 45.455 0.00 0.00 43.68 2.90
458 698 2.679837 AGGAATAGCAAACACGCTGATG 59.320 45.455 0.00 0.00 43.68 3.07
459 699 2.420022 GGAATAGCAAACACGCTGATGT 59.580 45.455 0.00 0.00 43.68 3.06
460 700 3.419915 GAATAGCAAACACGCTGATGTG 58.580 45.455 0.00 0.00 43.68 3.21
461 701 2.162319 TAGCAAACACGCTGATGTGA 57.838 45.000 7.36 0.00 43.68 3.58
462 702 0.588252 AGCAAACACGCTGATGTGAC 59.412 50.000 7.36 0.00 41.85 3.67
463 703 0.307453 GCAAACACGCTGATGTGACA 59.693 50.000 7.36 0.00 42.55 3.58
464 704 1.268488 GCAAACACGCTGATGTGACAA 60.268 47.619 7.36 0.00 42.55 3.18
465 705 2.794282 GCAAACACGCTGATGTGACAAA 60.794 45.455 7.36 0.00 42.55 2.83
466 706 3.038017 CAAACACGCTGATGTGACAAAG 58.962 45.455 7.36 0.00 42.55 2.77
467 707 2.238942 ACACGCTGATGTGACAAAGA 57.761 45.000 7.36 0.00 42.55 2.52
468 708 2.560504 ACACGCTGATGTGACAAAGAA 58.439 42.857 7.36 0.00 42.55 2.52
469 709 3.141398 ACACGCTGATGTGACAAAGAAT 58.859 40.909 7.36 0.00 42.55 2.40
470 710 3.565482 ACACGCTGATGTGACAAAGAATT 59.435 39.130 7.36 0.00 42.55 2.17
471 711 4.754618 ACACGCTGATGTGACAAAGAATTA 59.245 37.500 7.36 0.00 42.55 1.40
472 712 5.238432 ACACGCTGATGTGACAAAGAATTAA 59.762 36.000 7.36 0.00 42.55 1.40
473 713 6.142139 CACGCTGATGTGACAAAGAATTAAA 58.858 36.000 3.16 0.00 42.55 1.52
474 714 6.086765 CACGCTGATGTGACAAAGAATTAAAC 59.913 38.462 3.16 0.00 42.55 2.01
475 715 6.142139 CGCTGATGTGACAAAGAATTAAACA 58.858 36.000 3.16 0.00 0.00 2.83
476 716 6.636447 CGCTGATGTGACAAAGAATTAAACAA 59.364 34.615 3.16 0.00 0.00 2.83
477 717 7.149080 CGCTGATGTGACAAAGAATTAAACAAG 60.149 37.037 3.16 0.00 0.00 3.16
478 718 7.862372 GCTGATGTGACAAAGAATTAAACAAGA 59.138 33.333 3.16 0.00 0.00 3.02
479 719 9.390795 CTGATGTGACAAAGAATTAAACAAGAG 57.609 33.333 0.00 0.00 0.00 2.85
480 720 9.119418 TGATGTGACAAAGAATTAAACAAGAGA 57.881 29.630 0.00 0.00 0.00 3.10
481 721 9.604626 GATGTGACAAAGAATTAAACAAGAGAG 57.395 33.333 0.00 0.00 0.00 3.20
482 722 8.731275 TGTGACAAAGAATTAAACAAGAGAGA 57.269 30.769 0.00 0.00 0.00 3.10
483 723 9.342308 TGTGACAAAGAATTAAACAAGAGAGAT 57.658 29.630 0.00 0.00 0.00 2.75
484 724 9.604626 GTGACAAAGAATTAAACAAGAGAGATG 57.395 33.333 0.00 0.00 0.00 2.90
485 725 8.786898 TGACAAAGAATTAAACAAGAGAGATGG 58.213 33.333 0.00 0.00 0.00 3.51
486 726 8.697507 ACAAAGAATTAAACAAGAGAGATGGT 57.302 30.769 0.00 0.00 0.00 3.55
487 727 9.136323 ACAAAGAATTAAACAAGAGAGATGGTT 57.864 29.630 0.00 0.00 0.00 3.67
491 731 9.883142 AGAATTAAACAAGAGAGATGGTTAGAG 57.117 33.333 0.00 0.00 32.00 2.43
492 732 9.660180 GAATTAAACAAGAGAGATGGTTAGAGT 57.340 33.333 0.00 0.00 32.00 3.24
548 788 9.333724 TGATATGCTACTTTATATCATGCATGG 57.666 33.333 25.97 10.76 39.87 3.66
549 789 9.334947 GATATGCTACTTTATATCATGCATGGT 57.665 33.333 25.97 22.25 39.53 3.55
550 790 7.621428 ATGCTACTTTATATCATGCATGGTC 57.379 36.000 25.97 4.76 38.10 4.02
551 791 6.532826 TGCTACTTTATATCATGCATGGTCA 58.467 36.000 25.97 11.97 0.00 4.02
552 792 7.170277 TGCTACTTTATATCATGCATGGTCAT 58.830 34.615 25.97 17.59 0.00 3.06
553 793 8.320617 TGCTACTTTATATCATGCATGGTCATA 58.679 33.333 25.97 16.44 0.00 2.15
554 794 9.166173 GCTACTTTATATCATGCATGGTCATAA 57.834 33.333 25.97 20.65 0.00 1.90
617 857 9.820725 ACACGATACTAGTATATGATACTCCTC 57.179 37.037 23.89 7.37 0.00 3.71
618 858 9.819267 CACGATACTAGTATATGATACTCCTCA 57.181 37.037 15.42 0.00 0.00 3.86
632 872 8.628630 TGATACTCCTCATAATGAGTAGTCTG 57.371 38.462 8.44 0.00 39.07 3.51
633 873 8.440771 TGATACTCCTCATAATGAGTAGTCTGA 58.559 37.037 8.44 0.00 39.07 3.27
634 874 8.862325 ATACTCCTCATAATGAGTAGTCTGAG 57.138 38.462 8.44 7.32 39.07 3.35
635 875 6.668645 ACTCCTCATAATGAGTAGTCTGAGT 58.331 40.000 11.54 0.00 39.07 3.41
636 876 7.807198 ACTCCTCATAATGAGTAGTCTGAGTA 58.193 38.462 11.54 0.00 39.07 2.59
637 877 7.936847 ACTCCTCATAATGAGTAGTCTGAGTAG 59.063 40.741 11.54 8.73 39.07 2.57
638 878 6.712998 TCCTCATAATGAGTAGTCTGAGTAGC 59.287 42.308 11.54 0.00 42.80 3.58
639 879 6.072175 CCTCATAATGAGTAGTCTGAGTAGCC 60.072 46.154 11.54 0.00 42.80 3.93
640 880 6.606069 TCATAATGAGTAGTCTGAGTAGCCT 58.394 40.000 0.00 0.00 0.00 4.58
641 881 6.712998 TCATAATGAGTAGTCTGAGTAGCCTC 59.287 42.308 0.00 0.00 38.27 4.70
642 882 4.788925 ATGAGTAGTCTGAGTAGCCTCT 57.211 45.455 9.98 0.00 38.61 3.69
643 883 5.897851 ATGAGTAGTCTGAGTAGCCTCTA 57.102 43.478 9.98 1.17 38.61 2.43
644 884 5.284861 TGAGTAGTCTGAGTAGCCTCTAG 57.715 47.826 9.98 0.00 38.61 2.43
656 896 7.824672 TGAGTAGCCTCTAGTAACAAAAGTAC 58.175 38.462 0.00 0.00 38.61 2.73
658 898 5.417754 AGCCTCTAGTAACAAAAGTACCC 57.582 43.478 0.00 0.00 0.00 3.69
659 899 4.224594 AGCCTCTAGTAACAAAAGTACCCC 59.775 45.833 0.00 0.00 0.00 4.95
660 900 4.624843 GCCTCTAGTAACAAAAGTACCCCC 60.625 50.000 0.00 0.00 0.00 5.40
661 901 4.781621 CCTCTAGTAACAAAAGTACCCCCT 59.218 45.833 0.00 0.00 0.00 4.79
662 902 5.105023 CCTCTAGTAACAAAAGTACCCCCTC 60.105 48.000 0.00 0.00 0.00 4.30
663 903 5.658474 TCTAGTAACAAAAGTACCCCCTCT 58.342 41.667 0.00 0.00 0.00 3.69
664 904 4.635699 AGTAACAAAAGTACCCCCTCTG 57.364 45.455 0.00 0.00 0.00 3.35
665 905 3.978672 AGTAACAAAAGTACCCCCTCTGT 59.021 43.478 0.00 0.00 0.00 3.41
666 906 3.503800 AACAAAAGTACCCCCTCTGTC 57.496 47.619 0.00 0.00 0.00 3.51
667 907 2.702748 ACAAAAGTACCCCCTCTGTCT 58.297 47.619 0.00 0.00 0.00 3.41
668 908 2.638363 ACAAAAGTACCCCCTCTGTCTC 59.362 50.000 0.00 0.00 0.00 3.36
669 909 2.637872 CAAAAGTACCCCCTCTGTCTCA 59.362 50.000 0.00 0.00 0.00 3.27
670 910 2.950990 AAGTACCCCCTCTGTCTCAT 57.049 50.000 0.00 0.00 0.00 2.90
671 911 4.348020 AAAGTACCCCCTCTGTCTCATA 57.652 45.455 0.00 0.00 0.00 2.15
672 912 4.348020 AAGTACCCCCTCTGTCTCATAA 57.652 45.455 0.00 0.00 0.00 1.90
673 913 4.561254 AGTACCCCCTCTGTCTCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
674 914 4.227197 AGTACCCCCTCTGTCTCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
675 915 3.136641 ACCCCCTCTGTCTCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
676 916 4.280789 ACCCCCTCTGTCTCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
677 917 4.631234 ACCCCCTCTGTCTCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
678 918 4.656112 ACCCCCTCTGTCTCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
679 919 4.901849 CCCCCTCTGTCTCATAATGTAAGA 59.098 45.833 0.00 0.00 0.00 2.10
680 920 5.221541 CCCCCTCTGTCTCATAATGTAAGAC 60.222 48.000 0.00 0.00 39.87 3.01
681 921 5.508153 CCCCTCTGTCTCATAATGTAAGACG 60.508 48.000 0.00 0.00 41.84 4.18
682 922 5.067936 CCCTCTGTCTCATAATGTAAGACGT 59.932 44.000 0.00 0.00 41.84 4.34
683 923 6.405953 CCCTCTGTCTCATAATGTAAGACGTT 60.406 42.308 0.00 0.00 41.84 3.99
684 924 7.036220 CCTCTGTCTCATAATGTAAGACGTTT 58.964 38.462 0.00 0.00 41.84 3.60
685 925 7.545965 CCTCTGTCTCATAATGTAAGACGTTTT 59.454 37.037 0.00 0.00 41.84 2.43
686 926 8.827177 TCTGTCTCATAATGTAAGACGTTTTT 57.173 30.769 0.00 0.00 41.84 1.94
724 964 8.904099 AATATTAAGAAATGTAAGACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
725 965 3.629142 AAGAAATGTAAGACGGAGGGG 57.371 47.619 0.00 0.00 0.00 4.79
726 966 2.547990 AGAAATGTAAGACGGAGGGGT 58.452 47.619 0.00 0.00 0.00 4.95
727 967 3.716431 AGAAATGTAAGACGGAGGGGTA 58.284 45.455 0.00 0.00 0.00 3.69
728 968 4.296056 AGAAATGTAAGACGGAGGGGTAT 58.704 43.478 0.00 0.00 0.00 2.73
729 969 4.344390 AGAAATGTAAGACGGAGGGGTATC 59.656 45.833 0.00 0.00 0.00 2.24
730 970 2.832643 TGTAAGACGGAGGGGTATCA 57.167 50.000 0.00 0.00 0.00 2.15
731 971 3.323774 TGTAAGACGGAGGGGTATCAT 57.676 47.619 0.00 0.00 0.00 2.45
797 1038 2.490903 CAATTTCTTGGAGTGGGCAGAG 59.509 50.000 0.00 0.00 0.00 3.35
1033 1275 4.233635 GAGCAAGCATCGCGGCAG 62.234 66.667 6.13 0.64 36.50 4.85
1188 1437 2.543238 GCTCACGGTAATAAGGGAGACG 60.543 54.545 0.00 0.00 40.17 4.18
1193 1450 2.287668 CGGTAATAAGGGAGACGCTCTG 60.288 54.545 6.78 0.00 0.00 3.35
1208 1465 2.249413 CTCTGCCGTCCTCCAGCATT 62.249 60.000 0.00 0.00 35.64 3.56
1211 1468 2.109126 GCCGTCCTCCAGCATTCAC 61.109 63.158 0.00 0.00 0.00 3.18
1212 1469 1.811266 CCGTCCTCCAGCATTCACG 60.811 63.158 0.00 0.00 0.00 4.35
1213 1470 1.811266 CGTCCTCCAGCATTCACGG 60.811 63.158 0.00 0.00 0.00 4.94
1214 1471 2.109126 GTCCTCCAGCATTCACGGC 61.109 63.158 0.00 0.00 0.00 5.68
1223 1480 2.040544 CATTCACGGCGGCTTCCTT 61.041 57.895 13.24 0.00 0.00 3.36
1224 1481 1.745489 ATTCACGGCGGCTTCCTTC 60.745 57.895 13.24 0.00 0.00 3.46
1248 1505 2.375146 TGCTGAGGCACTTATCTCGTA 58.625 47.619 0.00 0.00 44.28 3.43
1262 1521 3.106242 TCTCGTATTATGCGGCATTGT 57.894 42.857 21.99 12.36 0.00 2.71
1291 1550 0.600255 ACGAGTTTGTGAAGAGCGGG 60.600 55.000 0.00 0.00 0.00 6.13
1384 1643 2.031919 TCGCTGACCGGCATTGTT 59.968 55.556 0.00 0.00 37.59 2.83
1402 1661 0.906066 TTGGCATACCCTCGTAAGCA 59.094 50.000 0.00 0.00 40.22 3.91
1466 1725 2.086869 TGAGCTTTACTTGCATCCTGC 58.913 47.619 0.00 0.00 45.29 4.85
1481 1740 3.326889 CTGCACAACCGCAATCCCG 62.327 63.158 0.00 0.00 42.45 5.14
1495 1754 4.303603 CCCGCATGCATTCGCTCG 62.304 66.667 19.57 0.00 39.64 5.03
1498 1757 2.052414 GCATGCATTCGCTCGCTC 60.052 61.111 14.21 0.00 39.64 5.03
1668 1928 1.901591 TGCAGGCAAGAAAGAAGAGG 58.098 50.000 0.00 0.00 0.00 3.69
1838 2099 5.685511 GCGCAACTCTTCAGAAATTTGTAAA 59.314 36.000 0.30 0.00 0.00 2.01
1850 2111 7.068103 TCAGAAATTTGTAAACCAGCTCTTCAA 59.932 33.333 0.00 0.00 0.00 2.69
1873 2140 2.171003 ACTGCTTAAACCCATTCAGGC 58.829 47.619 0.00 0.00 35.39 4.85
1874 2141 2.225117 ACTGCTTAAACCCATTCAGGCT 60.225 45.455 0.00 0.00 35.39 4.58
1875 2142 2.424956 CTGCTTAAACCCATTCAGGCTC 59.575 50.000 0.00 0.00 35.39 4.70
1876 2143 1.751351 GCTTAAACCCATTCAGGCTCC 59.249 52.381 0.00 0.00 35.39 4.70
1877 2144 2.379005 CTTAAACCCATTCAGGCTCCC 58.621 52.381 0.00 0.00 35.39 4.30
1878 2145 1.681229 TAAACCCATTCAGGCTCCCT 58.319 50.000 0.00 0.00 35.39 4.20
1914 2181 8.367911 ACTTGTGTCTGTCTAAATCATCACTTA 58.632 33.333 0.00 0.00 0.00 2.24
1919 2186 8.762645 TGTCTGTCTAAATCATCACTTATCCTT 58.237 33.333 0.00 0.00 0.00 3.36
1966 2236 6.615264 AGCATGCATCTTAGTAAGTTCATG 57.385 37.500 21.98 22.54 35.66 3.07
1969 2239 7.012138 AGCATGCATCTTAGTAAGTTCATGAAG 59.988 37.037 26.62 13.56 35.14 3.02
2037 2312 3.678289 TGCTTGTGTTCACTGCAGATAT 58.322 40.909 23.35 0.00 32.48 1.63
2100 2382 3.149196 GCAACTCTTGATTGGTCTGGAA 58.851 45.455 0.00 0.00 0.00 3.53
2286 2568 0.468771 GGGGCAGATCATTTCAGGGG 60.469 60.000 0.00 0.00 0.00 4.79
2401 2685 3.323115 TCATACTCTGAGCAGCTAATGGG 59.677 47.826 4.19 0.00 0.00 4.00
2455 2739 0.539669 CCCGGCAAAAAGAGAACCCT 60.540 55.000 0.00 0.00 0.00 4.34
2473 2757 6.782494 AGAACCCTTTTTGACTGATAACCATT 59.218 34.615 0.00 0.00 0.00 3.16
2615 2899 3.498774 ATCCAGGATCTTGGTATGTGC 57.501 47.619 22.17 0.00 39.35 4.57
2660 2944 6.002082 TCTCGGAGGATCTAAATTCGACATA 58.998 40.000 4.96 0.00 33.73 2.29
2736 3021 1.977854 TGCAGGAAAGGTAGCAGAAGA 59.022 47.619 0.00 0.00 32.48 2.87
2787 3072 5.898972 ACCATGGGATAATTTGCAACACTAT 59.101 36.000 18.09 0.00 0.00 2.12
2820 3105 9.733556 TTCTCAACCTAAGCAATTTCTATAACA 57.266 29.630 0.00 0.00 0.00 2.41
2862 3155 4.810491 AGCATGCTTCAAAAACAAACGAAT 59.190 33.333 16.30 0.00 0.00 3.34
2869 3162 8.171840 TGCTTCAAAAACAAACGAATAAAAAGG 58.828 29.630 0.00 0.00 0.00 3.11
2893 3186 2.559998 AGACCACAAAGCAAACAACG 57.440 45.000 0.00 0.00 0.00 4.10
2900 3193 1.122323 CAAAGCAAACAACGCGTATGC 59.878 47.619 23.30 23.30 37.28 3.14
3057 3350 1.607801 GCAGAGCAACCATTTCCCCC 61.608 60.000 0.00 0.00 0.00 5.40
3068 3361 1.373590 ATTTCCCCCGCATTTCGACG 61.374 55.000 0.00 0.00 41.67 5.12
3094 3387 0.613260 TCTATTGCGAGTTGGCTGGT 59.387 50.000 0.00 0.00 0.00 4.00
3096 3389 0.323302 TATTGCGAGTTGGCTGGTGA 59.677 50.000 0.00 0.00 0.00 4.02
3209 3518 7.147655 CCCCTACGGATGTATGAATATGATCTT 60.148 40.741 0.00 0.00 0.00 2.40
3261 3570 5.046448 AGCACTCTGAAGAATCTGAATCACT 60.046 40.000 0.00 0.00 33.72 3.41
3294 3617 2.047002 TGGTCATGTGATGGCATCTG 57.953 50.000 26.49 17.19 36.36 2.90
3352 3725 4.795268 TCTACGCTTTCACTGTTCACTAG 58.205 43.478 0.00 0.00 0.00 2.57
3693 4085 0.319641 GGTTCAGACGAGGTCACCAC 60.320 60.000 0.00 0.00 34.60 4.16
3694 4086 0.319641 GTTCAGACGAGGTCACCACC 60.320 60.000 0.00 0.00 44.19 4.61
3755 4150 2.433145 GCGTACTGCTGCTGCTGA 60.433 61.111 25.33 9.30 41.73 4.26
3829 4230 1.062810 GGGGAAAGCTAGAGGAGAGGA 60.063 57.143 0.00 0.00 0.00 3.71
3833 4234 3.636764 GGAAAGCTAGAGGAGAGGAGAAG 59.363 52.174 0.00 0.00 0.00 2.85
3834 4235 3.312736 AAGCTAGAGGAGAGGAGAAGG 57.687 52.381 0.00 0.00 0.00 3.46
3835 4236 1.499007 AGCTAGAGGAGAGGAGAAGGG 59.501 57.143 0.00 0.00 0.00 3.95
3836 4237 1.497286 GCTAGAGGAGAGGAGAAGGGA 59.503 57.143 0.00 0.00 0.00 4.20
3837 4238 2.489073 GCTAGAGGAGAGGAGAAGGGAG 60.489 59.091 0.00 0.00 0.00 4.30
3894 4295 4.899239 CCATCTGCCGTCTCGCCC 62.899 72.222 0.00 0.00 0.00 6.13
3895 4296 4.899239 CATCTGCCGTCTCGCCCC 62.899 72.222 0.00 0.00 0.00 5.80
3923 4324 2.049156 CAGTCGCAGCTGTTCGGA 60.049 61.111 16.64 5.23 0.00 4.55
3954 4355 2.036098 TCCGCCGTCTGGTTCCTA 59.964 61.111 0.00 0.00 37.67 2.94
3971 4372 3.207547 TACGGCGAGCCATCCATCG 62.208 63.158 16.62 0.66 41.79 3.84
3985 4386 2.047844 ATCGTTCTGCAGCAGCGT 60.048 55.556 18.43 4.87 46.23 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.935201 GCTGTTATGAGAGGTGAGCAAG 59.065 50.000 0.00 0.00 0.00 4.01
3 4 2.675032 CGCTGTTATGAGAGGTGAGCAA 60.675 50.000 0.00 0.00 0.00 3.91
5 6 1.565305 CGCTGTTATGAGAGGTGAGC 58.435 55.000 0.00 0.00 0.00 4.26
6 7 1.478510 ACCGCTGTTATGAGAGGTGAG 59.521 52.381 0.00 0.00 43.77 3.51
7 8 1.557099 ACCGCTGTTATGAGAGGTGA 58.443 50.000 0.00 0.00 43.77 4.02
8 9 2.386661 AACCGCTGTTATGAGAGGTG 57.613 50.000 0.00 0.00 44.58 4.00
10 11 3.252974 AGAAACCGCTGTTATGAGAGG 57.747 47.619 0.00 0.00 38.78 3.69
11 12 4.363999 CCTAGAAACCGCTGTTATGAGAG 58.636 47.826 0.00 0.00 33.30 3.20
12 13 3.132289 CCCTAGAAACCGCTGTTATGAGA 59.868 47.826 0.00 0.00 33.30 3.27
13 14 3.118738 ACCCTAGAAACCGCTGTTATGAG 60.119 47.826 0.00 0.00 33.30 2.90
14 15 2.835764 ACCCTAGAAACCGCTGTTATGA 59.164 45.455 0.00 0.00 33.30 2.15
15 16 3.195661 GACCCTAGAAACCGCTGTTATG 58.804 50.000 0.00 0.00 33.30 1.90
16 17 2.169978 GGACCCTAGAAACCGCTGTTAT 59.830 50.000 0.00 0.00 33.30 1.89
17 18 1.551883 GGACCCTAGAAACCGCTGTTA 59.448 52.381 0.00 0.00 33.30 2.41
18 19 0.323957 GGACCCTAGAAACCGCTGTT 59.676 55.000 0.00 0.00 35.82 3.16
19 20 1.551019 GGGACCCTAGAAACCGCTGT 61.551 60.000 2.09 0.00 0.00 4.40
20 21 1.221021 GGGACCCTAGAAACCGCTG 59.779 63.158 2.09 0.00 0.00 5.18
21 22 0.620700 ATGGGACCCTAGAAACCGCT 60.621 55.000 13.00 0.00 0.00 5.52
22 23 0.463833 CATGGGACCCTAGAAACCGC 60.464 60.000 13.00 0.00 0.00 5.68
23 24 1.200519 TCATGGGACCCTAGAAACCG 58.799 55.000 13.00 0.00 0.00 4.44
36 37 2.827322 ACATGGTCAACAACATCATGGG 59.173 45.455 0.00 0.00 39.39 4.00
38 39 3.840468 CCACATGGTCAACAACATCATG 58.160 45.455 0.00 0.00 40.48 3.07
39 40 2.231964 GCCACATGGTCAACAACATCAT 59.768 45.455 0.00 0.00 37.57 2.45
49 50 2.282391 GCCACTGCCACATGGTCA 60.282 61.111 0.00 0.00 38.34 4.02
51 52 1.778017 TACTGCCACTGCCACATGGT 61.778 55.000 0.00 0.00 38.34 3.55
63 64 6.711277 CCTTATATCTTAGCCATTACTGCCA 58.289 40.000 0.00 0.00 0.00 4.92
64 65 5.586643 GCCTTATATCTTAGCCATTACTGCC 59.413 44.000 0.00 0.00 0.00 4.85
68 69 5.063564 GCGTGCCTTATATCTTAGCCATTAC 59.936 44.000 0.00 0.00 0.00 1.89
82 83 4.575885 TCTTAAAGTCAAGCGTGCCTTAT 58.424 39.130 0.00 0.00 31.00 1.73
100 101 9.256477 CTTGTATGTCTTTGTGTTGTACTCTTA 57.744 33.333 0.00 0.00 0.00 2.10
129 130 4.082841 TGCTCGCAAATCTTTAGCAATTGA 60.083 37.500 10.34 0.00 40.05 2.57
130 131 4.030977 GTGCTCGCAAATCTTTAGCAATTG 59.969 41.667 0.00 0.00 44.16 2.32
145 146 3.980646 AAAATAAAGTGTGTGCTCGCA 57.019 38.095 0.00 0.00 0.00 5.10
146 147 3.846335 GCTAAAATAAAGTGTGTGCTCGC 59.154 43.478 0.00 0.00 0.00 5.03
147 148 4.846137 GTGCTAAAATAAAGTGTGTGCTCG 59.154 41.667 0.00 0.00 0.00 5.03
148 149 5.625311 GTGTGCTAAAATAAAGTGTGTGCTC 59.375 40.000 0.00 0.00 0.00 4.26
150 151 5.173131 GTGTGTGCTAAAATAAAGTGTGTGC 59.827 40.000 0.00 0.00 0.00 4.57
151 152 5.685511 GGTGTGTGCTAAAATAAAGTGTGTG 59.314 40.000 0.00 0.00 0.00 3.82
152 153 5.592688 AGGTGTGTGCTAAAATAAAGTGTGT 59.407 36.000 0.00 0.00 0.00 3.72
153 154 6.017109 AGAGGTGTGTGCTAAAATAAAGTGTG 60.017 38.462 0.00 0.00 0.00 3.82
155 156 6.560253 AGAGGTGTGTGCTAAAATAAAGTG 57.440 37.500 0.00 0.00 0.00 3.16
157 158 7.602644 TCTGTAGAGGTGTGTGCTAAAATAAAG 59.397 37.037 0.00 0.00 0.00 1.85
158 159 7.446769 TCTGTAGAGGTGTGTGCTAAAATAAA 58.553 34.615 0.00 0.00 0.00 1.40
159 160 6.999950 TCTGTAGAGGTGTGTGCTAAAATAA 58.000 36.000 0.00 0.00 0.00 1.40
160 161 6.599356 TCTGTAGAGGTGTGTGCTAAAATA 57.401 37.500 0.00 0.00 0.00 1.40
166 393 2.251818 ACATCTGTAGAGGTGTGTGCT 58.748 47.619 4.73 0.00 42.33 4.40
172 399 9.307121 CTTCACTAAAATACATCTGTAGAGGTG 57.693 37.037 9.25 0.00 39.59 4.00
189 416 9.985730 ATCATCTTGCAAAATTTCTTCACTAAA 57.014 25.926 0.00 0.00 0.00 1.85
191 418 8.030692 CCATCATCTTGCAAAATTTCTTCACTA 58.969 33.333 0.00 0.00 0.00 2.74
192 419 6.872020 CCATCATCTTGCAAAATTTCTTCACT 59.128 34.615 0.00 0.00 0.00 3.41
193 420 6.091713 CCCATCATCTTGCAAAATTTCTTCAC 59.908 38.462 0.00 0.00 0.00 3.18
195 422 6.400568 TCCCATCATCTTGCAAAATTTCTTC 58.599 36.000 0.00 0.00 0.00 2.87
196 423 6.363167 TCCCATCATCTTGCAAAATTTCTT 57.637 33.333 0.00 0.00 0.00 2.52
209 444 5.327732 ACATCAACAAGTTTCCCATCATCT 58.672 37.500 0.00 0.00 0.00 2.90
214 449 5.047092 GGATGAACATCAACAAGTTTCCCAT 60.047 40.000 15.22 0.00 39.54 4.00
218 453 7.769272 TTTTGGATGAACATCAACAAGTTTC 57.231 32.000 15.22 0.00 39.54 2.78
313 550 8.765219 GCGAAAGTATTATTCTAATCTCAAGCA 58.235 33.333 0.00 0.00 0.00 3.91
327 564 9.826574 TTAGGTGTTATTGAGCGAAAGTATTAT 57.173 29.630 0.00 0.00 0.00 1.28
329 566 8.732746 ATTAGGTGTTATTGAGCGAAAGTATT 57.267 30.769 0.00 0.00 0.00 1.89
331 568 9.656040 TTAATTAGGTGTTATTGAGCGAAAGTA 57.344 29.630 0.00 0.00 0.00 2.24
346 583 3.981211 ACGTCACGTGTTAATTAGGTGT 58.019 40.909 16.51 0.00 39.18 4.16
368 608 9.342308 TCAGTTTCAAGAGATGACAGTAAAAAT 57.658 29.630 0.00 0.00 37.92 1.82
376 616 3.668447 GCCTCAGTTTCAAGAGATGACA 58.332 45.455 0.00 0.00 37.92 3.58
379 619 2.005451 CCGCCTCAGTTTCAAGAGATG 58.995 52.381 0.00 0.00 33.74 2.90
397 637 7.382488 CGATTAAGATATCACCATTATAGCCCG 59.618 40.741 5.32 0.00 0.00 6.13
398 638 8.421784 TCGATTAAGATATCACCATTATAGCCC 58.578 37.037 5.32 0.00 0.00 5.19
399 639 9.988815 ATCGATTAAGATATCACCATTATAGCC 57.011 33.333 5.32 0.00 0.00 3.93
405 645 9.605275 CATGGTATCGATTAAGATATCACCATT 57.395 33.333 17.11 4.86 44.22 3.16
406 646 7.712639 GCATGGTATCGATTAAGATATCACCAT 59.287 37.037 14.91 14.91 44.22 3.55
407 647 7.041721 GCATGGTATCGATTAAGATATCACCA 58.958 38.462 12.04 12.04 44.22 4.17
408 648 7.010552 GTGCATGGTATCGATTAAGATATCACC 59.989 40.741 1.71 1.88 44.22 4.02
409 649 7.761704 AGTGCATGGTATCGATTAAGATATCAC 59.238 37.037 1.71 3.54 44.22 3.06
410 650 7.840931 AGTGCATGGTATCGATTAAGATATCA 58.159 34.615 1.71 2.90 45.12 2.15
411 651 7.976175 TGAGTGCATGGTATCGATTAAGATATC 59.024 37.037 1.71 0.00 35.78 1.63
412 652 7.840931 TGAGTGCATGGTATCGATTAAGATAT 58.159 34.615 1.71 0.00 35.78 1.63
413 653 7.227049 TGAGTGCATGGTATCGATTAAGATA 57.773 36.000 1.71 0.00 32.39 1.98
414 654 6.101650 TGAGTGCATGGTATCGATTAAGAT 57.898 37.500 1.71 0.00 34.79 2.40
415 655 5.509670 CCTGAGTGCATGGTATCGATTAAGA 60.510 44.000 1.71 0.00 0.00 2.10
416 656 4.687948 CCTGAGTGCATGGTATCGATTAAG 59.312 45.833 1.71 0.00 0.00 1.85
417 657 4.343814 TCCTGAGTGCATGGTATCGATTAA 59.656 41.667 1.71 0.00 0.00 1.40
418 658 3.895041 TCCTGAGTGCATGGTATCGATTA 59.105 43.478 1.71 0.00 0.00 1.75
419 659 2.700371 TCCTGAGTGCATGGTATCGATT 59.300 45.455 1.71 0.00 0.00 3.34
420 660 2.319844 TCCTGAGTGCATGGTATCGAT 58.680 47.619 2.16 2.16 0.00 3.59
421 661 1.775385 TCCTGAGTGCATGGTATCGA 58.225 50.000 0.00 0.00 0.00 3.59
422 662 2.602257 TTCCTGAGTGCATGGTATCG 57.398 50.000 0.00 0.00 0.00 2.92
423 663 3.999663 GCTATTCCTGAGTGCATGGTATC 59.000 47.826 0.00 0.00 0.00 2.24
424 664 3.392285 TGCTATTCCTGAGTGCATGGTAT 59.608 43.478 0.00 0.00 0.00 2.73
425 665 2.771372 TGCTATTCCTGAGTGCATGGTA 59.229 45.455 0.00 0.00 0.00 3.25
426 666 1.561076 TGCTATTCCTGAGTGCATGGT 59.439 47.619 0.00 0.00 0.00 3.55
427 667 2.336945 TGCTATTCCTGAGTGCATGG 57.663 50.000 0.00 0.00 0.00 3.66
428 668 3.441222 TGTTTGCTATTCCTGAGTGCATG 59.559 43.478 0.00 0.00 33.50 4.06
429 669 3.441572 GTGTTTGCTATTCCTGAGTGCAT 59.558 43.478 0.00 0.00 33.50 3.96
430 670 2.813754 GTGTTTGCTATTCCTGAGTGCA 59.186 45.455 0.00 0.00 0.00 4.57
431 671 2.159653 CGTGTTTGCTATTCCTGAGTGC 60.160 50.000 0.00 0.00 0.00 4.40
432 672 2.159653 GCGTGTTTGCTATTCCTGAGTG 60.160 50.000 0.00 0.00 0.00 3.51
433 673 2.076863 GCGTGTTTGCTATTCCTGAGT 58.923 47.619 0.00 0.00 0.00 3.41
434 674 2.094894 CAGCGTGTTTGCTATTCCTGAG 59.905 50.000 0.00 0.00 45.23 3.35
435 675 2.076100 CAGCGTGTTTGCTATTCCTGA 58.924 47.619 0.00 0.00 45.23 3.86
436 676 2.076100 TCAGCGTGTTTGCTATTCCTG 58.924 47.619 0.00 0.00 45.23 3.86
437 677 2.472695 TCAGCGTGTTTGCTATTCCT 57.527 45.000 0.00 0.00 45.23 3.36
438 678 2.420022 ACATCAGCGTGTTTGCTATTCC 59.580 45.455 0.00 0.00 45.23 3.01
439 679 3.125146 TCACATCAGCGTGTTTGCTATTC 59.875 43.478 0.00 0.00 45.23 1.75
440 680 3.073678 TCACATCAGCGTGTTTGCTATT 58.926 40.909 0.00 0.00 45.23 1.73
441 681 2.416547 GTCACATCAGCGTGTTTGCTAT 59.583 45.455 0.00 0.00 45.23 2.97
442 682 1.798223 GTCACATCAGCGTGTTTGCTA 59.202 47.619 0.00 0.00 45.23 3.49
444 684 0.307453 TGTCACATCAGCGTGTTTGC 59.693 50.000 0.00 0.00 38.12 3.68
445 685 2.753989 TTGTCACATCAGCGTGTTTG 57.246 45.000 0.00 0.00 38.12 2.93
446 686 2.942376 TCTTTGTCACATCAGCGTGTTT 59.058 40.909 0.00 0.00 38.12 2.83
447 687 2.560504 TCTTTGTCACATCAGCGTGTT 58.439 42.857 0.00 0.00 38.12 3.32
448 688 2.238942 TCTTTGTCACATCAGCGTGT 57.761 45.000 0.00 0.00 38.12 4.49
449 689 3.818961 ATTCTTTGTCACATCAGCGTG 57.181 42.857 0.00 0.00 38.29 5.34
450 690 5.940192 TTAATTCTTTGTCACATCAGCGT 57.060 34.783 0.00 0.00 0.00 5.07
451 691 6.142139 TGTTTAATTCTTTGTCACATCAGCG 58.858 36.000 0.00 0.00 0.00 5.18
452 692 7.862372 TCTTGTTTAATTCTTTGTCACATCAGC 59.138 33.333 0.00 0.00 0.00 4.26
453 693 9.390795 CTCTTGTTTAATTCTTTGTCACATCAG 57.609 33.333 0.00 0.00 0.00 2.90
454 694 9.119418 TCTCTTGTTTAATTCTTTGTCACATCA 57.881 29.630 0.00 0.00 0.00 3.07
455 695 9.604626 CTCTCTTGTTTAATTCTTTGTCACATC 57.395 33.333 0.00 0.00 0.00 3.06
456 696 9.342308 TCTCTCTTGTTTAATTCTTTGTCACAT 57.658 29.630 0.00 0.00 0.00 3.21
457 697 8.731275 TCTCTCTTGTTTAATTCTTTGTCACA 57.269 30.769 0.00 0.00 0.00 3.58
458 698 9.604626 CATCTCTCTTGTTTAATTCTTTGTCAC 57.395 33.333 0.00 0.00 0.00 3.67
459 699 8.786898 CCATCTCTCTTGTTTAATTCTTTGTCA 58.213 33.333 0.00 0.00 0.00 3.58
460 700 8.787852 ACCATCTCTCTTGTTTAATTCTTTGTC 58.212 33.333 0.00 0.00 0.00 3.18
461 701 8.697507 ACCATCTCTCTTGTTTAATTCTTTGT 57.302 30.769 0.00 0.00 0.00 2.83
465 705 9.883142 CTCTAACCATCTCTCTTGTTTAATTCT 57.117 33.333 0.00 0.00 0.00 2.40
466 706 9.660180 ACTCTAACCATCTCTCTTGTTTAATTC 57.340 33.333 0.00 0.00 0.00 2.17
522 762 9.333724 CCATGCATGATATAAAGTAGCATATCA 57.666 33.333 28.31 6.71 44.24 2.15
523 763 9.334947 ACCATGCATGATATAAAGTAGCATATC 57.665 33.333 28.31 0.00 39.00 1.63
524 764 9.334947 GACCATGCATGATATAAAGTAGCATAT 57.665 33.333 28.31 0.00 39.00 1.78
525 765 8.320617 TGACCATGCATGATATAAAGTAGCATA 58.679 33.333 28.31 0.00 39.00 3.14
526 766 7.170277 TGACCATGCATGATATAAAGTAGCAT 58.830 34.615 28.31 0.00 41.42 3.79
527 767 6.532826 TGACCATGCATGATATAAAGTAGCA 58.467 36.000 28.31 7.61 34.78 3.49
528 768 7.621428 ATGACCATGCATGATATAAAGTAGC 57.379 36.000 28.31 5.21 0.00 3.58
591 831 9.820725 GAGGAGTATCATATACTAGTATCGTGT 57.179 37.037 18.68 11.49 36.25 4.49
592 832 9.819267 TGAGGAGTATCATATACTAGTATCGTG 57.181 37.037 18.68 17.37 36.25 4.35
614 854 8.178610 AGGCTACTCAGACTACTCATTATGAGG 61.179 44.444 23.94 11.21 38.90 3.86
615 855 6.714810 AGGCTACTCAGACTACTCATTATGAG 59.285 42.308 19.49 19.49 38.90 2.90
616 856 6.606069 AGGCTACTCAGACTACTCATTATGA 58.394 40.000 0.00 0.00 38.90 2.15
617 857 6.714810 AGAGGCTACTCAGACTACTCATTATG 59.285 42.308 0.00 0.00 41.70 1.90
618 858 6.848069 AGAGGCTACTCAGACTACTCATTAT 58.152 40.000 0.00 0.00 41.70 1.28
619 859 6.255294 AGAGGCTACTCAGACTACTCATTA 57.745 41.667 0.00 0.00 41.70 1.90
620 860 5.124036 AGAGGCTACTCAGACTACTCATT 57.876 43.478 0.00 0.00 41.70 2.57
621 861 4.788925 AGAGGCTACTCAGACTACTCAT 57.211 45.455 0.00 0.00 41.70 2.90
622 862 4.717778 ACTAGAGGCTACTCAGACTACTCA 59.282 45.833 0.00 0.00 41.70 3.41
623 863 5.286267 ACTAGAGGCTACTCAGACTACTC 57.714 47.826 0.00 0.00 41.70 2.59
624 864 6.156602 TGTTACTAGAGGCTACTCAGACTACT 59.843 42.308 0.00 0.00 41.70 2.57
625 865 6.347696 TGTTACTAGAGGCTACTCAGACTAC 58.652 44.000 0.00 0.00 41.70 2.73
626 866 6.556974 TGTTACTAGAGGCTACTCAGACTA 57.443 41.667 0.00 0.00 41.70 2.59
627 867 5.438698 TGTTACTAGAGGCTACTCAGACT 57.561 43.478 0.00 0.00 45.65 3.24
628 868 6.512342 TTTGTTACTAGAGGCTACTCAGAC 57.488 41.667 0.00 0.00 46.44 3.51
629 869 6.720288 ACTTTTGTTACTAGAGGCTACTCAGA 59.280 38.462 0.00 0.00 46.44 3.27
630 870 6.926313 ACTTTTGTTACTAGAGGCTACTCAG 58.074 40.000 0.00 0.00 46.44 3.35
631 871 6.912951 ACTTTTGTTACTAGAGGCTACTCA 57.087 37.500 0.00 0.00 46.44 3.41
632 872 7.257003 GGTACTTTTGTTACTAGAGGCTACTC 58.743 42.308 0.00 0.00 44.31 2.59
633 873 6.154192 GGGTACTTTTGTTACTAGAGGCTACT 59.846 42.308 0.00 0.00 0.00 2.57
634 874 6.336566 GGGTACTTTTGTTACTAGAGGCTAC 58.663 44.000 0.00 0.00 0.00 3.58
635 875 5.423290 GGGGTACTTTTGTTACTAGAGGCTA 59.577 44.000 0.00 0.00 0.00 3.93
636 876 4.224594 GGGGTACTTTTGTTACTAGAGGCT 59.775 45.833 0.00 0.00 0.00 4.58
637 877 4.511527 GGGGTACTTTTGTTACTAGAGGC 58.488 47.826 0.00 0.00 0.00 4.70
638 878 4.781621 AGGGGGTACTTTTGTTACTAGAGG 59.218 45.833 0.00 0.00 0.00 3.69
639 879 5.720520 AGAGGGGGTACTTTTGTTACTAGAG 59.279 44.000 0.00 0.00 0.00 2.43
640 880 5.482878 CAGAGGGGGTACTTTTGTTACTAGA 59.517 44.000 0.00 0.00 0.00 2.43
641 881 5.247792 ACAGAGGGGGTACTTTTGTTACTAG 59.752 44.000 0.00 0.00 0.00 2.57
642 882 5.157395 ACAGAGGGGGTACTTTTGTTACTA 58.843 41.667 0.00 0.00 0.00 1.82
643 883 3.978672 ACAGAGGGGGTACTTTTGTTACT 59.021 43.478 0.00 0.00 0.00 2.24
644 884 4.041321 AGACAGAGGGGGTACTTTTGTTAC 59.959 45.833 0.00 0.00 0.00 2.50
656 896 4.901849 TCTTACATTATGAGACAGAGGGGG 59.098 45.833 0.00 0.00 0.00 5.40
658 898 5.067936 ACGTCTTACATTATGAGACAGAGGG 59.932 44.000 12.46 1.64 42.74 4.30
659 899 6.137794 ACGTCTTACATTATGAGACAGAGG 57.862 41.667 12.46 9.06 42.74 3.69
660 900 8.467402 AAAACGTCTTACATTATGAGACAGAG 57.533 34.615 12.46 2.17 42.74 3.35
661 901 8.827177 AAAAACGTCTTACATTATGAGACAGA 57.173 30.769 12.46 0.91 42.74 3.41
698 938 9.991906 CCCTCCGTCTTACATTTCTTAATATTA 57.008 33.333 0.00 0.00 0.00 0.98
699 939 7.937394 CCCCTCCGTCTTACATTTCTTAATATT 59.063 37.037 0.00 0.00 0.00 1.28
700 940 7.072076 ACCCCTCCGTCTTACATTTCTTAATAT 59.928 37.037 0.00 0.00 0.00 1.28
701 941 6.384886 ACCCCTCCGTCTTACATTTCTTAATA 59.615 38.462 0.00 0.00 0.00 0.98
702 942 5.191124 ACCCCTCCGTCTTACATTTCTTAAT 59.809 40.000 0.00 0.00 0.00 1.40
703 943 4.533311 ACCCCTCCGTCTTACATTTCTTAA 59.467 41.667 0.00 0.00 0.00 1.85
704 944 4.098894 ACCCCTCCGTCTTACATTTCTTA 58.901 43.478 0.00 0.00 0.00 2.10
705 945 2.910977 ACCCCTCCGTCTTACATTTCTT 59.089 45.455 0.00 0.00 0.00 2.52
706 946 2.547990 ACCCCTCCGTCTTACATTTCT 58.452 47.619 0.00 0.00 0.00 2.52
707 947 4.100498 TGATACCCCTCCGTCTTACATTTC 59.900 45.833 0.00 0.00 0.00 2.17
708 948 4.035112 TGATACCCCTCCGTCTTACATTT 58.965 43.478 0.00 0.00 0.00 2.32
709 949 3.649843 TGATACCCCTCCGTCTTACATT 58.350 45.455 0.00 0.00 0.00 2.71
710 950 3.323774 TGATACCCCTCCGTCTTACAT 57.676 47.619 0.00 0.00 0.00 2.29
711 951 2.832643 TGATACCCCTCCGTCTTACA 57.167 50.000 0.00 0.00 0.00 2.41
712 952 4.684484 AAATGATACCCCTCCGTCTTAC 57.316 45.455 0.00 0.00 0.00 2.34
713 953 7.472334 GTATAAATGATACCCCTCCGTCTTA 57.528 40.000 0.00 0.00 35.28 2.10
714 954 6.356186 GTATAAATGATACCCCTCCGTCTT 57.644 41.667 0.00 0.00 35.28 3.01
715 955 5.997384 GTATAAATGATACCCCTCCGTCT 57.003 43.478 0.00 0.00 35.28 4.18
765 1005 8.792633 CCACTCCAAGAAATTGTGAAATTACTA 58.207 33.333 0.00 0.00 0.00 1.82
766 1006 7.255942 CCCACTCCAAGAAATTGTGAAATTACT 60.256 37.037 0.00 0.00 0.00 2.24
767 1007 6.868339 CCCACTCCAAGAAATTGTGAAATTAC 59.132 38.462 0.00 0.00 0.00 1.89
771 1011 3.069443 GCCCACTCCAAGAAATTGTGAAA 59.931 43.478 0.00 0.00 0.00 2.69
797 1038 3.303881 GGAACCCATGTTTTTCTCTGC 57.696 47.619 0.00 0.00 33.97 4.26
961 1203 3.082701 GGGCTGCCTCTCTGCTCT 61.083 66.667 19.68 0.00 37.18 4.09
1089 1337 3.450115 GGTCGTCCCCGGAGACAG 61.450 72.222 17.02 9.05 36.52 3.51
1149 1397 3.626680 CTTGGCGGCGTCGAAGAGA 62.627 63.158 16.53 0.00 36.95 3.10
1197 1454 2.268920 GCCGTGAATGCTGGAGGA 59.731 61.111 0.00 0.00 0.00 3.71
1203 1460 3.127533 GAAGCCGCCGTGAATGCT 61.128 61.111 0.00 0.00 35.08 3.79
1208 1465 4.735132 CGAAGGAAGCCGCCGTGA 62.735 66.667 0.00 0.00 0.00 4.35
1211 1468 2.511600 ATTCGAAGGAAGCCGCCG 60.512 61.111 3.35 0.00 35.19 6.46
1212 1469 3.102097 CATTCGAAGGAAGCCGCC 58.898 61.111 3.14 0.00 35.19 6.13
1213 1470 2.109126 AGCATTCGAAGGAAGCCGC 61.109 57.895 15.01 2.56 35.19 6.53
1214 1471 0.740868 TCAGCATTCGAAGGAAGCCG 60.741 55.000 15.01 3.01 35.19 5.52
1248 1505 2.760092 ACCTGAAACAATGCCGCATAAT 59.240 40.909 6.22 0.00 0.00 1.28
1262 1521 2.093394 TCACAAACTCGTCCACCTGAAA 60.093 45.455 0.00 0.00 0.00 2.69
1291 1550 4.530857 CCGAGCCCGACCACCATC 62.531 72.222 0.00 0.00 38.22 3.51
1384 1643 1.128200 ATGCTTACGAGGGTATGCCA 58.872 50.000 1.04 0.59 44.74 4.92
1402 1661 2.028748 GTGGCAGTGAAGCAATTGGAAT 60.029 45.455 7.72 0.00 35.83 3.01
1466 1725 2.699768 ATGCGGGATTGCGGTTGTG 61.700 57.895 0.00 0.00 37.81 3.33
1472 1731 1.659335 GAATGCATGCGGGATTGCG 60.659 57.895 14.09 0.00 41.80 4.85
1474 1733 1.659335 GCGAATGCATGCGGGATTG 60.659 57.895 27.90 2.89 37.71 2.67
1481 1740 2.052414 GAGCGAGCGAATGCATGC 60.052 61.111 11.82 11.82 46.23 4.06
1495 1754 1.493950 CGCAACCGATGATCAGGAGC 61.494 60.000 7.95 9.66 36.29 4.70
1498 1757 0.179100 AGACGCAACCGATGATCAGG 60.179 55.000 0.09 0.00 38.29 3.86
1578 1837 2.202932 CTGCCGACCTTGATCCCG 60.203 66.667 0.00 0.00 0.00 5.14
1584 1843 4.680237 TCGTGGCTGCCGACCTTG 62.680 66.667 14.98 0.00 0.00 3.61
1609 1868 3.633418 AGAGAATAGAGCGTACTTGGGT 58.367 45.455 0.00 0.00 0.00 4.51
1668 1928 3.256558 GAGCATGGTTTCAGCCAAAATC 58.743 45.455 0.00 0.00 42.48 2.17
1838 2099 2.659428 AGCAGTTTTTGAAGAGCTGGT 58.341 42.857 0.00 0.00 33.74 4.00
1850 2111 4.503123 GCCTGAATGGGTTTAAGCAGTTTT 60.503 41.667 0.00 0.00 36.00 2.43
1873 2140 1.614824 AAGTCAGGGAGGCAGGGAG 60.615 63.158 0.00 0.00 0.00 4.30
1874 2141 1.920325 CAAGTCAGGGAGGCAGGGA 60.920 63.158 0.00 0.00 0.00 4.20
1875 2142 2.227036 ACAAGTCAGGGAGGCAGGG 61.227 63.158 0.00 0.00 0.00 4.45
1876 2143 1.002868 CACAAGTCAGGGAGGCAGG 60.003 63.158 0.00 0.00 0.00 4.85
1877 2144 0.321122 GACACAAGTCAGGGAGGCAG 60.321 60.000 0.00 0.00 44.34 4.85
1878 2145 1.754745 GACACAAGTCAGGGAGGCA 59.245 57.895 0.00 0.00 44.34 4.75
1879 2146 4.703703 GACACAAGTCAGGGAGGC 57.296 61.111 0.00 0.00 44.34 4.70
1914 2181 6.096282 TCGACTTTTCAGGAAACAAAAAGGAT 59.904 34.615 10.50 0.00 43.76 3.24
1919 2186 6.015027 TGTTCGACTTTTCAGGAAACAAAA 57.985 33.333 0.00 0.00 0.00 2.44
1966 2236 8.246180 TCAGAAAACAGCAATATTTCCATCTTC 58.754 33.333 0.00 0.00 34.39 2.87
1969 2239 8.761575 TTTCAGAAAACAGCAATATTTCCATC 57.238 30.769 0.00 0.00 34.39 3.51
2004 2275 7.862372 CAGTGAACACAAGCAAATAGTTACATT 59.138 33.333 7.68 0.00 0.00 2.71
2232 2514 7.043524 CGAACATTACAGAGAACTGATCTGATG 60.044 40.741 9.78 6.54 45.80 3.07
2286 2568 1.078759 CAGCGGTGTCGATCCAGTTC 61.079 60.000 6.41 0.00 39.00 3.01
2373 2657 7.545362 TTAGCTGCTCAGAGTATGAAATTTC 57.455 36.000 4.91 11.41 37.52 2.17
2455 2739 7.340122 TCACACAATGGTTATCAGTCAAAAA 57.660 32.000 0.00 0.00 0.00 1.94
2473 2757 2.361757 CAAACCTTCAGGCAATCACACA 59.638 45.455 0.00 0.00 39.32 3.72
2543 2827 1.378646 GCCCTCCTTGGTTACCAGC 60.379 63.158 3.65 0.00 33.81 4.85
2615 2899 3.606687 AGGTAACAGGCTTCCATTTACG 58.393 45.455 0.00 0.00 41.41 3.18
2660 2944 8.680903 CACTGGAGAAATAGTTGCTGATTTATT 58.319 33.333 0.00 0.00 0.00 1.40
2736 3021 1.535462 CGCCAACGATTTTCTCCAAGT 59.465 47.619 0.00 0.00 43.93 3.16
2787 3072 7.817418 AATTGCTTAGGTTGAGAAACTTACA 57.183 32.000 0.00 0.00 0.00 2.41
2869 3162 5.623673 CGTTGTTTGCTTTGTGGTCTAATAC 59.376 40.000 0.00 0.00 0.00 1.89
3013 3306 9.065871 GCAACTCAATTGTAGATTTATGTGTTC 57.934 33.333 5.13 0.00 40.77 3.18
3057 3350 0.577269 GATTCTCCCGTCGAAATGCG 59.423 55.000 0.00 0.00 42.69 4.73
3068 3361 3.134458 CCAACTCGCAATAGATTCTCCC 58.866 50.000 0.00 0.00 0.00 4.30
3209 3518 3.956848 AGTCAGTAGCTGCACATATCTGA 59.043 43.478 4.12 3.72 0.00 3.27
3215 3524 2.669300 CAGAGTCAGTAGCTGCACAT 57.331 50.000 4.12 0.00 0.00 3.21
3319 3689 2.011540 AAGCGTAGAGGTTTAGCTGC 57.988 50.000 0.00 0.00 37.23 5.25
3352 3725 3.369835 GCAATACGCAACTCACAGTAC 57.630 47.619 0.00 0.00 41.79 2.73
3445 3818 2.109480 GGGTTCCAAGTTTAAGTCCCCT 59.891 50.000 0.00 0.00 0.00 4.79
3497 3874 5.835819 AGTTAGCCTCTGAGCTGTGATATAA 59.164 40.000 0.00 0.00 44.67 0.98
3504 3881 2.167487 GCTTAGTTAGCCTCTGAGCTGT 59.833 50.000 0.00 0.00 44.67 4.40
3680 4072 4.736896 GCCGGTGGTGACCTCGTC 62.737 72.222 1.90 0.00 40.58 4.20
3709 4101 2.954684 ATCTTGGCTGGTCGCGGAA 61.955 57.895 6.13 0.00 40.44 4.30
3755 4150 2.631545 GCCGTCCAGGGTGTATTAGTAT 59.368 50.000 0.00 0.00 41.48 2.12
3829 4230 3.004951 CCATGCCTGCTCCCTTCT 58.995 61.111 0.00 0.00 0.00 2.85
3907 4308 2.049063 GTCCGAACAGCTGCGACT 60.049 61.111 15.27 0.00 0.00 4.18
3954 4355 4.592192 CGATGGATGGCTCGCCGT 62.592 66.667 1.53 1.53 39.42 5.68
3971 4372 2.250485 CACACGCTGCTGCAGAAC 59.750 61.111 32.30 14.88 39.64 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.