Multiple sequence alignment - TraesCS5A01G406400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G406400 chr5A 100.000 2591 0 0 1 2591 597749883 597752473 0.000000e+00 4785.0
1 TraesCS5A01G406400 chr5B 89.950 796 53 11 1798 2586 586466754 586465979 0.000000e+00 1002.0
2 TraesCS5A01G406400 chr5B 88.682 804 67 8 1797 2586 586711850 586712643 0.000000e+00 959.0
3 TraesCS5A01G406400 chr5B 89.130 276 21 6 1134 1404 586467348 586467077 4.130000e-88 335.0
4 TraesCS5A01G406400 chr5B 96.491 171 6 0 1635 1805 601327722 601327892 1.520000e-72 283.0
5 TraesCS5A01G406400 chr5B 95.480 177 7 1 1622 1798 276913785 276913960 5.460000e-72 281.0
6 TraesCS5A01G406400 chr5B 83.904 292 18 11 1339 1616 586711547 586711823 4.280000e-63 252.0
7 TraesCS5A01G406400 chr5B 84.348 230 14 7 658 884 586710824 586711034 3.380000e-49 206.0
8 TraesCS5A01G406400 chr5B 87.861 173 10 5 1134 1306 586711404 586711565 2.630000e-45 193.0
9 TraesCS5A01G406400 chr5B 75.254 493 67 30 2116 2577 586533483 586533015 1.580000e-42 183.0
10 TraesCS5A01G406400 chr5B 93.939 66 4 0 1552 1617 586466851 586466786 1.640000e-17 100.0
11 TraesCS5A01G406400 chr5B 97.222 36 1 0 492 527 586467598 586467563 7.740000e-06 62.1
12 TraesCS5A01G406400 chr5B 94.118 34 2 0 1486 1519 586466991 586466958 5.000000e-03 52.8
13 TraesCS5A01G406400 chr5D 89.342 441 35 7 2053 2485 478730694 478731130 6.310000e-151 544.0
14 TraesCS5A01G406400 chr5D 83.258 442 34 18 492 902 478722918 478723350 1.130000e-98 370.0
15 TraesCS5A01G406400 chr5D 91.878 197 15 1 291 487 478722613 478722808 9.130000e-70 274.0
16 TraesCS5A01G406400 chr5D 85.714 210 14 12 916 1113 478729296 478729501 9.400000e-50 207.0
17 TraesCS5A01G406400 chr5D 96.522 115 4 0 2477 2591 478739233 478739347 9.460000e-45 191.0
18 TraesCS5A01G406400 chr5D 83.628 226 11 7 1265 1481 478729662 478729870 3.400000e-44 189.0
19 TraesCS5A01G406400 chr5D 88.776 98 8 3 1134 1230 478729580 478729675 1.630000e-22 117.0
20 TraesCS5A01G406400 chr5D 92.424 66 5 0 1552 1617 478729888 478729953 7.630000e-16 95.3
21 TraesCS5A01G406400 chr6B 99.394 165 1 0 1634 1798 564658232 564658068 1.510000e-77 300.0
22 TraesCS5A01G406400 chr1A 98.214 168 3 0 1635 1802 582574340 582574173 7.010000e-76 294.0
23 TraesCS5A01G406400 chr2B 97.605 167 4 0 1635 1801 344866566 344866732 1.170000e-73 287.0
24 TraesCS5A01G406400 chr2B 95.954 173 7 0 1635 1807 161144006 161144178 5.460000e-72 281.0
25 TraesCS5A01G406400 chr2B 95.930 172 7 0 1635 1806 207716158 207716329 1.960000e-71 279.0
26 TraesCS5A01G406400 chr3B 96.000 175 6 1 1635 1809 178399088 178399261 1.520000e-72 283.0
27 TraesCS5A01G406400 chr1B 96.491 171 6 0 1635 1805 67054048 67053878 1.520000e-72 283.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G406400 chr5A 597749883 597752473 2590 False 4785.00 4785 100.00000 1 2591 1 chr5A.!!$F1 2590
1 TraesCS5A01G406400 chr5B 586710824 586712643 1819 False 402.50 959 86.19875 658 2586 4 chr5B.!!$F3 1928
2 TraesCS5A01G406400 chr5B 586465979 586467598 1619 True 310.38 1002 92.87180 492 2586 5 chr5B.!!$R2 2094
3 TraesCS5A01G406400 chr5D 478722613 478723350 737 False 322.00 370 87.56800 291 902 2 chr5D.!!$F2 611
4 TraesCS5A01G406400 chr5D 478729296 478731130 1834 False 230.46 544 87.97680 916 2485 5 chr5D.!!$F3 1569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.035056 GACCCAACCCTCATCTGGTG 60.035 60.0 0.0 0.0 35.88 4.17 F
903 1060 0.037303 ACATCCACAAGACCAGCCTG 59.963 55.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1120 1373 0.108138 GGATGGGTGAGTTCCAGTCG 60.108 60.0 0.0 0.0 37.75 4.18 R
2475 3366 0.110056 GGTGCTTCGCAGTTGATGTG 60.110 55.0 0.0 0.0 40.08 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.305928 CAACTCCAACATGTTGACCCA 58.694 47.619 34.76 16.85 44.29 4.51
21 22 2.692557 CAACTCCAACATGTTGACCCAA 59.307 45.455 34.76 15.86 44.29 4.12
22 23 3.025322 ACTCCAACATGTTGACCCAAA 57.975 42.857 34.76 14.36 42.93 3.28
23 24 3.575805 ACTCCAACATGTTGACCCAAAT 58.424 40.909 34.76 13.21 42.93 2.32
24 25 3.321682 ACTCCAACATGTTGACCCAAATG 59.678 43.478 34.76 17.97 42.93 2.32
25 26 2.036992 TCCAACATGTTGACCCAAATGC 59.963 45.455 34.76 0.00 42.93 3.56
26 27 2.224233 CCAACATGTTGACCCAAATGCA 60.224 45.455 34.76 0.00 42.93 3.96
27 28 2.801679 CAACATGTTGACCCAAATGCAC 59.198 45.455 30.69 0.00 42.93 4.57
28 29 1.000385 ACATGTTGACCCAAATGCACG 60.000 47.619 0.00 0.00 0.00 5.34
29 30 1.000385 CATGTTGACCCAAATGCACGT 60.000 47.619 0.00 0.00 0.00 4.49
30 31 0.383590 TGTTGACCCAAATGCACGTG 59.616 50.000 12.28 12.28 0.00 4.49
31 32 0.665835 GTTGACCCAAATGCACGTGA 59.334 50.000 22.23 4.80 0.00 4.35
32 33 0.950836 TTGACCCAAATGCACGTGAG 59.049 50.000 22.23 2.53 0.00 3.51
33 34 1.210155 GACCCAAATGCACGTGAGC 59.790 57.895 22.23 5.09 0.00 4.26
34 35 1.228245 ACCCAAATGCACGTGAGCT 60.228 52.632 22.23 0.00 34.99 4.09
35 36 0.823356 ACCCAAATGCACGTGAGCTT 60.823 50.000 22.23 5.77 34.99 3.74
36 37 0.314935 CCCAAATGCACGTGAGCTTT 59.685 50.000 22.23 11.83 33.86 3.51
37 38 1.411394 CCAAATGCACGTGAGCTTTG 58.589 50.000 22.23 21.64 34.93 2.77
38 39 1.269206 CCAAATGCACGTGAGCTTTGT 60.269 47.619 22.23 0.00 34.14 2.83
39 40 2.046313 CAAATGCACGTGAGCTTTGTC 58.954 47.619 22.23 0.00 32.93 3.18
40 41 1.597742 AATGCACGTGAGCTTTGTCT 58.402 45.000 22.23 0.00 34.99 3.41
41 42 1.597742 ATGCACGTGAGCTTTGTCTT 58.402 45.000 22.23 0.00 34.99 3.01
42 43 1.378531 TGCACGTGAGCTTTGTCTTT 58.621 45.000 22.23 0.00 34.99 2.52
43 44 1.742831 TGCACGTGAGCTTTGTCTTTT 59.257 42.857 22.23 0.00 34.99 2.27
44 45 2.163412 TGCACGTGAGCTTTGTCTTTTT 59.837 40.909 22.23 0.00 34.99 1.94
64 65 3.193757 TCCGGTTGGATCGACTCG 58.806 61.111 0.00 0.00 40.17 4.18
65 66 1.676635 TCCGGTTGGATCGACTCGT 60.677 57.895 0.00 0.00 40.17 4.18
66 67 1.226603 CCGGTTGGATCGACTCGTC 60.227 63.158 0.00 0.00 37.49 4.20
67 68 1.226603 CGGTTGGATCGACTCGTCC 60.227 63.158 11.14 11.14 35.02 4.79
68 69 1.226603 GGTTGGATCGACTCGTCCG 60.227 63.158 12.49 0.00 37.32 4.79
69 70 1.872679 GTTGGATCGACTCGTCCGC 60.873 63.158 12.49 6.94 37.32 5.54
70 71 3.060020 TTGGATCGACTCGTCCGCC 62.060 63.158 12.49 5.58 37.32 6.13
71 72 4.267503 GGATCGACTCGTCCGCCC 62.268 72.222 0.00 0.00 0.00 6.13
72 73 4.267503 GATCGACTCGTCCGCCCC 62.268 72.222 0.00 0.00 0.00 5.80
73 74 4.816984 ATCGACTCGTCCGCCCCT 62.817 66.667 0.00 0.00 0.00 4.79
75 76 4.065281 CGACTCGTCCGCCCCTTT 62.065 66.667 0.00 0.00 0.00 3.11
76 77 2.346365 GACTCGTCCGCCCCTTTT 59.654 61.111 0.00 0.00 0.00 2.27
77 78 2.032071 ACTCGTCCGCCCCTTTTG 59.968 61.111 0.00 0.00 0.00 2.44
78 79 3.431725 CTCGTCCGCCCCTTTTGC 61.432 66.667 0.00 0.00 0.00 3.68
90 91 3.479255 CTTTTGCGGAAGGACAAGC 57.521 52.632 0.00 0.00 32.65 4.01
91 92 0.667993 CTTTTGCGGAAGGACAAGCA 59.332 50.000 0.00 0.00 32.65 3.91
92 93 1.066908 CTTTTGCGGAAGGACAAGCAA 59.933 47.619 0.00 0.00 46.22 3.91
93 94 2.029743 TTGCGGAAGGACAAGCAAC 58.970 52.632 0.00 0.00 43.55 4.17
94 95 0.749818 TTGCGGAAGGACAAGCAACA 60.750 50.000 0.00 0.00 43.55 3.33
95 96 0.749818 TGCGGAAGGACAAGCAACAA 60.750 50.000 0.00 0.00 36.60 2.83
96 97 0.317854 GCGGAAGGACAAGCAACAAC 60.318 55.000 0.00 0.00 0.00 3.32
97 98 1.021202 CGGAAGGACAAGCAACAACA 58.979 50.000 0.00 0.00 0.00 3.33
98 99 1.002468 CGGAAGGACAAGCAACAACAG 60.002 52.381 0.00 0.00 0.00 3.16
99 100 1.338020 GGAAGGACAAGCAACAACAGG 59.662 52.381 0.00 0.00 0.00 4.00
100 101 2.297701 GAAGGACAAGCAACAACAGGA 58.702 47.619 0.00 0.00 0.00 3.86
101 102 2.664402 AGGACAAGCAACAACAGGAT 57.336 45.000 0.00 0.00 0.00 3.24
102 103 3.788227 AGGACAAGCAACAACAGGATA 57.212 42.857 0.00 0.00 0.00 2.59
103 104 4.307032 AGGACAAGCAACAACAGGATAT 57.693 40.909 0.00 0.00 0.00 1.63
104 105 4.666512 AGGACAAGCAACAACAGGATATT 58.333 39.130 0.00 0.00 0.00 1.28
105 106 4.460382 AGGACAAGCAACAACAGGATATTG 59.540 41.667 0.00 0.00 0.00 1.90
106 107 4.458989 GGACAAGCAACAACAGGATATTGA 59.541 41.667 0.00 0.00 0.00 2.57
107 108 5.048083 GGACAAGCAACAACAGGATATTGAA 60.048 40.000 0.00 0.00 0.00 2.69
108 109 6.017400 ACAAGCAACAACAGGATATTGAAG 57.983 37.500 0.00 0.00 0.00 3.02
109 110 5.047802 ACAAGCAACAACAGGATATTGAAGG 60.048 40.000 0.00 0.00 0.00 3.46
110 111 4.922206 AGCAACAACAGGATATTGAAGGA 58.078 39.130 0.00 0.00 0.00 3.36
111 112 4.702131 AGCAACAACAGGATATTGAAGGAC 59.298 41.667 0.00 0.00 0.00 3.85
112 113 4.437390 GCAACAACAGGATATTGAAGGACG 60.437 45.833 0.00 0.00 0.00 4.79
113 114 4.553330 ACAACAGGATATTGAAGGACGT 57.447 40.909 0.00 0.00 0.00 4.34
114 115 4.504858 ACAACAGGATATTGAAGGACGTC 58.495 43.478 7.13 7.13 0.00 4.34
115 116 4.020573 ACAACAGGATATTGAAGGACGTCA 60.021 41.667 18.91 0.00 0.00 4.35
116 117 4.124851 ACAGGATATTGAAGGACGTCAC 57.875 45.455 18.91 6.91 0.00 3.67
117 118 3.513912 ACAGGATATTGAAGGACGTCACA 59.486 43.478 18.91 11.25 0.00 3.58
118 119 3.865745 CAGGATATTGAAGGACGTCACAC 59.134 47.826 18.91 7.95 0.00 3.82
119 120 3.769844 AGGATATTGAAGGACGTCACACT 59.230 43.478 18.91 10.59 0.00 3.55
120 121 4.113354 GGATATTGAAGGACGTCACACTC 58.887 47.826 18.91 8.06 0.00 3.51
121 122 4.142138 GGATATTGAAGGACGTCACACTCT 60.142 45.833 18.91 1.19 0.00 3.24
122 123 2.795175 TTGAAGGACGTCACACTCTC 57.205 50.000 18.91 4.56 0.00 3.20
123 124 0.959553 TGAAGGACGTCACACTCTCC 59.040 55.000 18.91 0.00 0.00 3.71
124 125 0.244178 GAAGGACGTCACACTCTCCC 59.756 60.000 18.91 0.00 0.00 4.30
125 126 0.178958 AAGGACGTCACACTCTCCCT 60.179 55.000 18.91 0.00 0.00 4.20
126 127 0.609681 AGGACGTCACACTCTCCCTC 60.610 60.000 18.91 0.00 0.00 4.30
127 128 1.596895 GGACGTCACACTCTCCCTCC 61.597 65.000 18.91 0.00 0.00 4.30
128 129 1.924320 GACGTCACACTCTCCCTCCG 61.924 65.000 11.55 0.00 0.00 4.63
129 130 2.701780 CGTCACACTCTCCCTCCGG 61.702 68.421 0.00 0.00 0.00 5.14
130 131 1.606889 GTCACACTCTCCCTCCGGT 60.607 63.158 0.00 0.00 0.00 5.28
131 132 1.606601 TCACACTCTCCCTCCGGTG 60.607 63.158 0.00 0.00 35.99 4.94
132 133 1.606601 CACACTCTCCCTCCGGTGA 60.607 63.158 4.76 0.00 34.28 4.02
133 134 0.972983 CACACTCTCCCTCCGGTGAT 60.973 60.000 4.76 0.00 31.33 3.06
134 135 0.252284 ACACTCTCCCTCCGGTGATT 60.252 55.000 4.76 0.00 31.33 2.57
135 136 1.006758 ACACTCTCCCTCCGGTGATTA 59.993 52.381 4.76 0.00 31.33 1.75
136 137 1.683917 CACTCTCCCTCCGGTGATTAG 59.316 57.143 4.76 0.00 31.33 1.73
137 138 0.676736 CTCTCCCTCCGGTGATTAGC 59.323 60.000 4.76 0.00 31.33 3.09
138 139 0.759436 TCTCCCTCCGGTGATTAGCC 60.759 60.000 4.76 0.00 0.00 3.93
145 146 2.380081 CGGTGATTAGCCGTGTTCC 58.620 57.895 0.00 0.00 43.84 3.62
146 147 0.390603 CGGTGATTAGCCGTGTTCCA 60.391 55.000 0.00 0.00 43.84 3.53
147 148 1.742411 CGGTGATTAGCCGTGTTCCAT 60.742 52.381 0.00 0.00 43.84 3.41
148 149 2.365582 GGTGATTAGCCGTGTTCCATT 58.634 47.619 0.00 0.00 0.00 3.16
149 150 2.752903 GGTGATTAGCCGTGTTCCATTT 59.247 45.455 0.00 0.00 0.00 2.32
150 151 3.192633 GGTGATTAGCCGTGTTCCATTTT 59.807 43.478 0.00 0.00 0.00 1.82
151 152 4.321675 GGTGATTAGCCGTGTTCCATTTTT 60.322 41.667 0.00 0.00 0.00 1.94
171 172 3.299340 TTAGTCTTCTGTTGTCCGAGC 57.701 47.619 0.00 0.00 0.00 5.03
172 173 1.333177 AGTCTTCTGTTGTCCGAGCT 58.667 50.000 0.00 0.00 0.00 4.09
173 174 1.271102 AGTCTTCTGTTGTCCGAGCTC 59.729 52.381 2.73 2.73 0.00 4.09
174 175 1.271102 GTCTTCTGTTGTCCGAGCTCT 59.729 52.381 12.85 0.00 0.00 4.09
175 176 2.488545 GTCTTCTGTTGTCCGAGCTCTA 59.511 50.000 12.85 0.00 0.00 2.43
176 177 3.057456 GTCTTCTGTTGTCCGAGCTCTAA 60.057 47.826 12.85 0.00 0.00 2.10
177 178 3.572682 TCTTCTGTTGTCCGAGCTCTAAA 59.427 43.478 12.85 0.00 0.00 1.85
178 179 3.577649 TCTGTTGTCCGAGCTCTAAAG 57.422 47.619 12.85 0.00 0.00 1.85
179 180 2.891580 TCTGTTGTCCGAGCTCTAAAGT 59.108 45.455 12.85 0.00 0.00 2.66
180 181 3.057456 TCTGTTGTCCGAGCTCTAAAGTC 60.057 47.826 12.85 0.00 0.00 3.01
181 182 2.626266 TGTTGTCCGAGCTCTAAAGTCA 59.374 45.455 12.85 2.01 0.00 3.41
182 183 2.987821 GTTGTCCGAGCTCTAAAGTCAC 59.012 50.000 12.85 0.00 0.00 3.67
183 184 1.544691 TGTCCGAGCTCTAAAGTCACC 59.455 52.381 12.85 0.00 0.00 4.02
184 185 1.544691 GTCCGAGCTCTAAAGTCACCA 59.455 52.381 12.85 0.00 0.00 4.17
185 186 2.166664 GTCCGAGCTCTAAAGTCACCAT 59.833 50.000 12.85 0.00 0.00 3.55
186 187 2.427453 TCCGAGCTCTAAAGTCACCATC 59.573 50.000 12.85 0.00 0.00 3.51
187 188 2.482142 CCGAGCTCTAAAGTCACCATCC 60.482 54.545 12.85 0.00 0.00 3.51
188 189 2.796383 CGAGCTCTAAAGTCACCATCCG 60.796 54.545 12.85 0.00 0.00 4.18
189 190 1.482593 AGCTCTAAAGTCACCATCCGG 59.517 52.381 0.00 0.00 38.77 5.14
191 192 2.738964 GCTCTAAAGTCACCATCCGGTC 60.739 54.545 0.00 0.00 44.71 4.79
192 193 1.829222 TCTAAAGTCACCATCCGGTCC 59.171 52.381 0.00 0.00 44.71 4.46
193 194 0.906775 TAAAGTCACCATCCGGTCCC 59.093 55.000 0.00 0.00 44.71 4.46
194 195 2.180159 AAAGTCACCATCCGGTCCCG 62.180 60.000 0.00 0.00 44.71 5.14
195 196 4.832608 GTCACCATCCGGTCCCGC 62.833 72.222 0.00 0.00 44.71 6.13
197 198 4.838152 CACCATCCGGTCCCGCAG 62.838 72.222 0.00 0.00 44.71 5.18
199 200 3.781307 CCATCCGGTCCCGCAGAA 61.781 66.667 0.00 0.00 38.24 3.02
200 201 2.511600 CATCCGGTCCCGCAGAAC 60.512 66.667 0.00 0.00 38.24 3.01
201 202 2.683933 ATCCGGTCCCGCAGAACT 60.684 61.111 0.00 0.00 38.24 3.01
202 203 1.380785 ATCCGGTCCCGCAGAACTA 60.381 57.895 0.00 0.00 38.24 2.24
203 204 1.673808 ATCCGGTCCCGCAGAACTAC 61.674 60.000 0.00 0.00 38.24 2.73
204 205 2.348888 CCGGTCCCGCAGAACTACT 61.349 63.158 0.00 0.00 38.24 2.57
215 216 1.754226 CAGAACTACTGCTCCTCCTCC 59.246 57.143 0.00 0.00 39.86 4.30
216 217 1.116308 GAACTACTGCTCCTCCTCCC 58.884 60.000 0.00 0.00 0.00 4.30
217 218 0.713579 AACTACTGCTCCTCCTCCCT 59.286 55.000 0.00 0.00 0.00 4.20
218 219 0.713579 ACTACTGCTCCTCCTCCCTT 59.286 55.000 0.00 0.00 0.00 3.95
219 220 1.342574 ACTACTGCTCCTCCTCCCTTC 60.343 57.143 0.00 0.00 0.00 3.46
220 221 1.011595 TACTGCTCCTCCTCCCTTCT 58.988 55.000 0.00 0.00 0.00 2.85
221 222 0.325203 ACTGCTCCTCCTCCCTTCTC 60.325 60.000 0.00 0.00 0.00 2.87
222 223 0.325110 CTGCTCCTCCTCCCTTCTCA 60.325 60.000 0.00 0.00 0.00 3.27
223 224 0.325110 TGCTCCTCCTCCCTTCTCAG 60.325 60.000 0.00 0.00 0.00 3.35
224 225 1.685355 GCTCCTCCTCCCTTCTCAGC 61.685 65.000 0.00 0.00 0.00 4.26
225 226 0.325110 CTCCTCCTCCCTTCTCAGCA 60.325 60.000 0.00 0.00 0.00 4.41
226 227 0.341258 TCCTCCTCCCTTCTCAGCAT 59.659 55.000 0.00 0.00 0.00 3.79
227 228 0.469070 CCTCCTCCCTTCTCAGCATG 59.531 60.000 0.00 0.00 37.54 4.06
228 229 0.179051 CTCCTCCCTTCTCAGCATGC 60.179 60.000 10.51 10.51 34.76 4.06
229 230 0.619832 TCCTCCCTTCTCAGCATGCT 60.620 55.000 16.30 16.30 34.76 3.79
230 231 0.255318 CCTCCCTTCTCAGCATGCTT 59.745 55.000 19.98 0.00 34.76 3.91
231 232 1.666054 CTCCCTTCTCAGCATGCTTC 58.334 55.000 19.98 0.00 34.76 3.86
232 233 0.107993 TCCCTTCTCAGCATGCTTCG 60.108 55.000 19.98 12.15 34.76 3.79
233 234 1.094073 CCCTTCTCAGCATGCTTCGG 61.094 60.000 19.98 13.29 34.76 4.30
234 235 0.392193 CCTTCTCAGCATGCTTCGGT 60.392 55.000 19.98 0.00 34.76 4.69
235 236 1.134699 CCTTCTCAGCATGCTTCGGTA 60.135 52.381 19.98 4.10 34.76 4.02
236 237 2.484417 CCTTCTCAGCATGCTTCGGTAT 60.484 50.000 19.98 0.00 34.76 2.73
237 238 2.229675 TCTCAGCATGCTTCGGTATG 57.770 50.000 19.98 5.93 40.29 2.39
238 239 1.202568 TCTCAGCATGCTTCGGTATGG 60.203 52.381 19.98 4.04 38.27 2.74
239 240 0.815213 TCAGCATGCTTCGGTATGGC 60.815 55.000 19.98 0.00 38.27 4.40
240 241 1.526917 AGCATGCTTCGGTATGGCC 60.527 57.895 16.30 0.00 38.27 5.36
241 242 2.555547 GCATGCTTCGGTATGGCCC 61.556 63.158 11.37 0.00 38.27 5.80
242 243 1.898574 CATGCTTCGGTATGGCCCC 60.899 63.158 0.00 0.00 35.00 5.80
243 244 2.382770 ATGCTTCGGTATGGCCCCA 61.383 57.895 0.00 0.00 0.00 4.96
244 245 1.719063 ATGCTTCGGTATGGCCCCAT 61.719 55.000 0.00 5.01 40.19 4.00
245 246 1.600916 GCTTCGGTATGGCCCCATC 60.601 63.158 0.00 0.00 37.82 3.51
246 247 1.073199 CTTCGGTATGGCCCCATCC 59.927 63.158 0.00 4.69 37.82 3.51
247 248 2.731691 CTTCGGTATGGCCCCATCCG 62.732 65.000 21.67 21.67 42.61 4.18
248 249 3.238497 CGGTATGGCCCCATCCGA 61.238 66.667 22.53 0.00 43.22 4.55
249 250 2.813726 CGGTATGGCCCCATCCGAA 61.814 63.158 22.53 0.00 43.22 4.30
250 251 1.767692 GGTATGGCCCCATCCGAAT 59.232 57.895 0.00 0.00 37.82 3.34
251 252 0.112412 GGTATGGCCCCATCCGAATT 59.888 55.000 0.00 0.00 37.82 2.17
252 253 1.480498 GGTATGGCCCCATCCGAATTT 60.480 52.381 0.00 0.00 37.82 1.82
253 254 1.613437 GTATGGCCCCATCCGAATTTG 59.387 52.381 0.00 0.00 37.82 2.32
254 255 1.402107 ATGGCCCCATCCGAATTTGC 61.402 55.000 0.00 0.00 29.42 3.68
255 256 1.758122 GGCCCCATCCGAATTTGCT 60.758 57.895 0.00 0.00 0.00 3.91
256 257 1.329913 GGCCCCATCCGAATTTGCTT 61.330 55.000 0.00 0.00 0.00 3.91
257 258 0.536724 GCCCCATCCGAATTTGCTTT 59.463 50.000 0.00 0.00 0.00 3.51
258 259 1.740043 GCCCCATCCGAATTTGCTTTG 60.740 52.381 0.00 0.00 0.00 2.77
259 260 1.824230 CCCCATCCGAATTTGCTTTGA 59.176 47.619 0.00 0.00 0.00 2.69
260 261 2.417243 CCCCATCCGAATTTGCTTTGAC 60.417 50.000 0.00 0.00 0.00 3.18
261 262 2.417243 CCCATCCGAATTTGCTTTGACC 60.417 50.000 0.00 0.00 0.00 4.02
262 263 2.417243 CCATCCGAATTTGCTTTGACCC 60.417 50.000 0.00 0.00 0.00 4.46
263 264 1.988293 TCCGAATTTGCTTTGACCCA 58.012 45.000 0.00 0.00 0.00 4.51
264 265 2.311463 TCCGAATTTGCTTTGACCCAA 58.689 42.857 0.00 0.00 0.00 4.12
265 266 2.035321 TCCGAATTTGCTTTGACCCAAC 59.965 45.455 0.00 0.00 0.00 3.77
266 267 2.403259 CGAATTTGCTTTGACCCAACC 58.597 47.619 0.00 0.00 0.00 3.77
267 268 2.766313 GAATTTGCTTTGACCCAACCC 58.234 47.619 0.00 0.00 0.00 4.11
268 269 2.101640 ATTTGCTTTGACCCAACCCT 57.898 45.000 0.00 0.00 0.00 4.34
269 270 1.408969 TTTGCTTTGACCCAACCCTC 58.591 50.000 0.00 0.00 0.00 4.30
270 271 0.260230 TTGCTTTGACCCAACCCTCA 59.740 50.000 0.00 0.00 0.00 3.86
271 272 0.482446 TGCTTTGACCCAACCCTCAT 59.518 50.000 0.00 0.00 0.00 2.90
272 273 1.177401 GCTTTGACCCAACCCTCATC 58.823 55.000 0.00 0.00 0.00 2.92
273 274 1.272147 GCTTTGACCCAACCCTCATCT 60.272 52.381 0.00 0.00 0.00 2.90
274 275 2.440409 CTTTGACCCAACCCTCATCTG 58.560 52.381 0.00 0.00 0.00 2.90
275 276 0.698238 TTGACCCAACCCTCATCTGG 59.302 55.000 0.00 0.00 0.00 3.86
276 277 0.475632 TGACCCAACCCTCATCTGGT 60.476 55.000 0.00 0.00 37.85 4.00
277 278 0.035056 GACCCAACCCTCATCTGGTG 60.035 60.000 0.00 0.00 35.88 4.17
278 279 1.304282 CCCAACCCTCATCTGGTGG 59.696 63.158 0.00 0.00 35.88 4.61
279 280 1.500783 CCCAACCCTCATCTGGTGGT 61.501 60.000 0.00 0.00 35.88 4.16
280 281 0.322816 CCAACCCTCATCTGGTGGTG 60.323 60.000 0.00 0.00 35.88 4.17
281 282 0.401738 CAACCCTCATCTGGTGGTGT 59.598 55.000 0.00 0.00 35.88 4.16
282 283 0.693049 AACCCTCATCTGGTGGTGTC 59.307 55.000 0.00 0.00 35.88 3.67
283 284 1.201429 ACCCTCATCTGGTGGTGTCC 61.201 60.000 0.00 0.00 33.94 4.02
284 285 1.200760 CCCTCATCTGGTGGTGTCCA 61.201 60.000 0.00 0.00 36.00 4.02
285 286 0.914644 CCTCATCTGGTGGTGTCCAT 59.085 55.000 0.00 0.00 35.28 3.41
286 287 1.134280 CCTCATCTGGTGGTGTCCATC 60.134 57.143 0.00 0.00 35.28 3.51
287 288 0.536724 TCATCTGGTGGTGTCCATCG 59.463 55.000 0.00 0.00 37.47 3.84
288 289 0.250234 CATCTGGTGGTGTCCATCGT 59.750 55.000 0.00 0.00 37.47 3.73
289 290 0.984230 ATCTGGTGGTGTCCATCGTT 59.016 50.000 0.00 0.00 37.47 3.85
308 309 8.035394 CCATCGTTGTAGAAGCCATACTTATAT 58.965 37.037 0.00 0.00 39.29 0.86
370 371 2.364632 TGGAAATACAGCAATGGACCG 58.635 47.619 0.00 0.00 0.00 4.79
374 375 0.469917 ATACAGCAATGGACCGGGAG 59.530 55.000 6.32 0.00 0.00 4.30
383 384 1.192146 TGGACCGGGAGAAGTGGAAG 61.192 60.000 6.32 0.00 0.00 3.46
399 400 6.499106 AGTGGAAGGGTGAAATTCAAATTT 57.501 33.333 0.00 0.44 41.06 1.82
400 401 7.610580 AGTGGAAGGGTGAAATTCAAATTTA 57.389 32.000 0.00 0.00 38.64 1.40
403 404 9.283768 GTGGAAGGGTGAAATTCAAATTTATTT 57.716 29.630 0.00 0.00 38.64 1.40
404 405 9.859152 TGGAAGGGTGAAATTCAAATTTATTTT 57.141 25.926 0.00 0.00 38.64 1.82
455 456 7.871463 TGATCTATTCATCAACAGTCATGCTAG 59.129 37.037 0.00 0.00 29.41 3.42
471 472 8.147058 AGTCATGCTAGTATAAAGAACATCAGG 58.853 37.037 0.00 0.00 0.00 3.86
472 473 7.386299 GTCATGCTAGTATAAAGAACATCAGGG 59.614 40.741 0.00 0.00 0.00 4.45
527 633 8.887036 ACATTTGCTAAAGATGTACATATCGA 57.113 30.769 8.71 0.00 32.58 3.59
543 649 3.577649 ATCGACTACACACCTCACAAG 57.422 47.619 0.00 0.00 0.00 3.16
599 705 3.009916 ACACTGAGGAAGATTGAAGGCAT 59.990 43.478 0.00 0.00 0.00 4.40
600 706 4.225942 ACACTGAGGAAGATTGAAGGCATA 59.774 41.667 0.00 0.00 0.00 3.14
603 709 5.884792 ACTGAGGAAGATTGAAGGCATAAAG 59.115 40.000 0.00 0.00 0.00 1.85
607 713 7.451255 TGAGGAAGATTGAAGGCATAAAGAAAA 59.549 33.333 0.00 0.00 0.00 2.29
616 722 5.806654 AGGCATAAAGAAAATGTGTGGTT 57.193 34.783 0.00 0.00 0.00 3.67
788 913 6.931840 GCTAGGAAACTCATACCAAATCTAGG 59.068 42.308 0.00 0.00 43.67 3.02
900 1057 4.737054 CATTTTACATCCACAAGACCAGC 58.263 43.478 0.00 0.00 0.00 4.85
902 1059 1.656587 TACATCCACAAGACCAGCCT 58.343 50.000 0.00 0.00 0.00 4.58
903 1060 0.037303 ACATCCACAAGACCAGCCTG 59.963 55.000 0.00 0.00 0.00 4.85
905 1062 1.067295 ATCCACAAGACCAGCCTGAA 58.933 50.000 0.00 0.00 0.00 3.02
907 1064 0.109342 CCACAAGACCAGCCTGAACT 59.891 55.000 0.00 0.00 0.00 3.01
908 1065 1.347707 CCACAAGACCAGCCTGAACTA 59.652 52.381 0.00 0.00 0.00 2.24
909 1066 2.417719 CACAAGACCAGCCTGAACTAC 58.582 52.381 0.00 0.00 0.00 2.73
910 1067 2.037772 CACAAGACCAGCCTGAACTACT 59.962 50.000 0.00 0.00 0.00 2.57
911 1068 2.300437 ACAAGACCAGCCTGAACTACTC 59.700 50.000 0.00 0.00 0.00 2.59
924 1108 6.294731 GCCTGAACTACTCAAATGGTCAAAAT 60.295 38.462 0.00 0.00 32.17 1.82
925 1109 7.094377 GCCTGAACTACTCAAATGGTCAAAATA 60.094 37.037 0.00 0.00 32.17 1.40
978 1162 1.961277 CTTGACAGCCGCGTTCCTT 60.961 57.895 4.92 0.00 0.00 3.36
979 1163 1.901650 CTTGACAGCCGCGTTCCTTC 61.902 60.000 4.92 0.00 0.00 3.46
980 1164 3.479269 GACAGCCGCGTTCCTTCG 61.479 66.667 4.92 0.00 0.00 3.79
981 1165 4.295119 ACAGCCGCGTTCCTTCGT 62.295 61.111 4.92 0.00 0.00 3.85
1004 1192 3.443045 CGCACCTCCACCAATGCC 61.443 66.667 0.00 0.00 34.49 4.40
1013 1201 4.673298 ACCAATGCCGCGACGACA 62.673 61.111 8.23 0.00 0.00 4.35
1014 1202 3.418913 CCAATGCCGCGACGACAA 61.419 61.111 8.23 0.00 0.00 3.18
1067 1291 4.959596 GCGCGCTCATCCTCTCCC 62.960 72.222 26.67 0.00 0.00 4.30
1120 1373 0.336737 TCCTCCTCCTTCCTCTGGAC 59.663 60.000 0.00 0.00 0.00 4.02
1151 1436 1.596477 CCCATCCTAAGCTCTGCGC 60.596 63.158 0.00 0.00 39.57 6.09
1152 1437 1.953138 CCATCCTAAGCTCTGCGCG 60.953 63.158 0.00 0.00 45.59 6.86
1153 1438 1.227089 CATCCTAAGCTCTGCGCGT 60.227 57.895 8.43 0.00 45.59 6.01
1154 1439 0.030773 CATCCTAAGCTCTGCGCGTA 59.969 55.000 8.43 0.71 45.59 4.42
1163 1448 1.265568 CTCTGCGCGTACGTTTACAT 58.734 50.000 17.90 0.00 42.83 2.29
1166 1451 0.388263 TGCGCGTACGTTTACATCCA 60.388 50.000 17.90 0.27 42.83 3.41
1174 1459 3.334583 ACGTTTACATCCACATGCTCT 57.665 42.857 0.00 0.00 32.57 4.09
1296 1585 2.348998 CTCAGAAGCGGCCACCTT 59.651 61.111 2.24 4.12 0.00 3.50
1385 1683 1.622811 GGGGTGTTTGATGAAATGCCA 59.377 47.619 3.72 0.00 0.00 4.92
1388 1686 3.578688 GGTGTTTGATGAAATGCCAGTC 58.421 45.455 0.00 0.00 0.00 3.51
1395 1693 0.394216 TGAAATGCCAGTCCCGGATG 60.394 55.000 0.73 0.00 0.00 3.51
1396 1694 0.394352 GAAATGCCAGTCCCGGATGT 60.394 55.000 0.73 0.00 0.00 3.06
1397 1695 0.039618 AAATGCCAGTCCCGGATGTT 59.960 50.000 0.73 0.00 0.00 2.71
1398 1696 0.680921 AATGCCAGTCCCGGATGTTG 60.681 55.000 0.73 0.00 0.00 3.33
1399 1697 1.852157 ATGCCAGTCCCGGATGTTGT 61.852 55.000 0.73 0.00 0.00 3.32
1400 1698 1.745489 GCCAGTCCCGGATGTTGTC 60.745 63.158 0.73 0.00 0.00 3.18
1401 1699 1.078426 CCAGTCCCGGATGTTGTCC 60.078 63.158 0.73 0.00 44.10 4.02
1442 1766 3.881688 GCCAACAAGATGCTAGATGATGT 59.118 43.478 0.00 0.00 0.00 3.06
1466 1828 2.618709 GGCAGGCATTGGTTAGTATGAC 59.381 50.000 0.00 0.00 0.00 3.06
1525 1908 1.523938 GGTCTCGGTTATGCCTGCC 60.524 63.158 0.00 0.00 34.25 4.85
1527 1910 0.107654 GTCTCGGTTATGCCTGCCTT 60.108 55.000 0.00 0.00 34.25 4.35
1528 1911 1.138266 GTCTCGGTTATGCCTGCCTTA 59.862 52.381 0.00 0.00 34.25 2.69
1529 1912 2.047061 TCTCGGTTATGCCTGCCTTAT 58.953 47.619 0.00 0.00 34.25 1.73
1530 1913 3.006537 GTCTCGGTTATGCCTGCCTTATA 59.993 47.826 0.00 0.00 34.25 0.98
1531 1914 3.644265 TCTCGGTTATGCCTGCCTTATAA 59.356 43.478 0.00 0.00 34.25 0.98
1532 1915 3.997021 CTCGGTTATGCCTGCCTTATAAG 59.003 47.826 5.43 5.43 34.25 1.73
1545 1934 6.463049 CCTGCCTTATAAGTAGCTGTGTACAT 60.463 42.308 11.50 0.00 0.00 2.29
1546 1935 7.255836 CCTGCCTTATAAGTAGCTGTGTACATA 60.256 40.741 11.50 0.00 0.00 2.29
1547 1936 7.431249 TGCCTTATAAGTAGCTGTGTACATAC 58.569 38.462 11.50 0.00 0.00 2.39
1548 1937 7.287005 TGCCTTATAAGTAGCTGTGTACATACT 59.713 37.037 11.50 0.00 0.00 2.12
1549 1938 8.790718 GCCTTATAAGTAGCTGTGTACATACTA 58.209 37.037 11.50 0.00 0.00 1.82
1581 1970 4.335416 CAAGCTTTTCTTGTAGGGGATCA 58.665 43.478 0.00 0.00 45.48 2.92
1611 2000 2.227388 GCTGATGGTGCACTTATATGGC 59.773 50.000 17.98 11.84 0.00 4.40
1617 2006 3.579151 TGGTGCACTTATATGGCGGTATA 59.421 43.478 17.98 0.00 0.00 1.47
1618 2007 4.040584 TGGTGCACTTATATGGCGGTATAA 59.959 41.667 17.98 3.23 0.00 0.98
1633 2035 5.869888 GGCGGTATAAGAATGGATTCTACTG 59.130 44.000 2.30 4.30 45.83 2.74
1634 2036 6.456501 GCGGTATAAGAATGGATTCTACTGT 58.543 40.000 2.30 0.00 45.83 3.55
1635 2037 7.309621 GGCGGTATAAGAATGGATTCTACTGTA 60.310 40.741 2.30 0.00 45.83 2.74
1636 2038 7.541437 GCGGTATAAGAATGGATTCTACTGTAC 59.459 40.741 2.30 2.07 45.83 2.90
1637 2039 8.794553 CGGTATAAGAATGGATTCTACTGTACT 58.205 37.037 2.30 0.00 45.83 2.73
1640 2042 6.487299 AAGAATGGATTCTACTGTACTCCC 57.513 41.667 2.30 0.00 45.83 4.30
1641 2043 5.782925 AGAATGGATTCTACTGTACTCCCT 58.217 41.667 0.00 0.00 44.80 4.20
1642 2044 5.836358 AGAATGGATTCTACTGTACTCCCTC 59.164 44.000 0.00 0.00 44.80 4.30
1643 2045 3.912248 TGGATTCTACTGTACTCCCTCC 58.088 50.000 0.00 0.00 0.00 4.30
1644 2046 2.885894 GGATTCTACTGTACTCCCTCCG 59.114 54.545 0.00 0.00 0.00 4.63
1645 2047 3.553904 GATTCTACTGTACTCCCTCCGT 58.446 50.000 0.00 0.00 0.00 4.69
1646 2048 3.446442 TTCTACTGTACTCCCTCCGTT 57.554 47.619 0.00 0.00 0.00 4.44
1647 2049 2.996631 TCTACTGTACTCCCTCCGTTC 58.003 52.381 0.00 0.00 0.00 3.95
1648 2050 2.022934 CTACTGTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
1649 2051 0.408700 ACTGTACTCCCTCCGTTCCT 59.591 55.000 0.00 0.00 0.00 3.36
1650 2052 1.637553 ACTGTACTCCCTCCGTTCCTA 59.362 52.381 0.00 0.00 0.00 2.94
1651 2053 2.042162 ACTGTACTCCCTCCGTTCCTAA 59.958 50.000 0.00 0.00 0.00 2.69
1652 2054 3.094572 CTGTACTCCCTCCGTTCCTAAA 58.905 50.000 0.00 0.00 0.00 1.85
1653 2055 3.705072 CTGTACTCCCTCCGTTCCTAAAT 59.295 47.826 0.00 0.00 0.00 1.40
1654 2056 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1655 2057 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
1656 2058 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1657 2059 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1658 2060 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1659 2061 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1660 2062 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1661 2063 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1662 2064 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1663 2065 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1664 2066 6.653740 CCTCCGTTCCTAAATACTTGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
1665 2067 7.174426 CCTCCGTTCCTAAATACTTGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
1666 2068 9.211485 CTCCGTTCCTAAATACTTGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
1667 2069 9.211485 TCCGTTCCTAAATACTTGTCTTTTTAG 57.789 33.333 0.00 0.00 33.47 1.85
1668 2070 9.211485 CCGTTCCTAAATACTTGTCTTTTTAGA 57.789 33.333 0.00 0.00 34.90 2.10
1682 2084 9.787532 TTGTCTTTTTAGAGATTTCAACAAGTG 57.212 29.630 0.00 0.00 0.00 3.16
1683 2085 9.173021 TGTCTTTTTAGAGATTTCAACAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
1684 2086 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
1685 2087 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
1688 2090 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
1689 2091 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
1691 2093 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1692 2094 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1693 2095 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
1694 2096 6.758593 TTTCAACAAGTGACTACATACGAC 57.241 37.500 0.00 0.00 35.39 4.34
1695 2097 4.469552 TCAACAAGTGACTACATACGACG 58.530 43.478 0.00 0.00 0.00 5.12
1696 2098 2.860062 ACAAGTGACTACATACGACGC 58.140 47.619 0.00 0.00 0.00 5.19
1697 2099 2.227149 ACAAGTGACTACATACGACGCA 59.773 45.455 0.00 0.00 0.00 5.24
1698 2100 3.239254 CAAGTGACTACATACGACGCAA 58.761 45.455 0.00 0.00 0.00 4.85
1699 2101 3.564235 AGTGACTACATACGACGCAAA 57.436 42.857 0.00 0.00 0.00 3.68
1700 2102 3.904571 AGTGACTACATACGACGCAAAA 58.095 40.909 0.00 0.00 0.00 2.44
1701 2103 4.491676 AGTGACTACATACGACGCAAAAT 58.508 39.130 0.00 0.00 0.00 1.82
1702 2104 4.326278 AGTGACTACATACGACGCAAAATG 59.674 41.667 0.00 0.00 0.00 2.32
1703 2105 4.325204 GTGACTACATACGACGCAAAATGA 59.675 41.667 0.00 0.00 0.00 2.57
1704 2106 4.561213 TGACTACATACGACGCAAAATGAG 59.439 41.667 0.00 0.00 0.00 2.90
1705 2107 4.491676 ACTACATACGACGCAAAATGAGT 58.508 39.130 0.00 0.00 31.65 3.41
1706 2108 3.722555 ACATACGACGCAAAATGAGTG 57.277 42.857 0.00 0.00 28.29 3.51
1707 2109 3.322369 ACATACGACGCAAAATGAGTGA 58.678 40.909 0.00 0.00 28.29 3.41
1708 2110 3.743911 ACATACGACGCAAAATGAGTGAA 59.256 39.130 0.00 0.00 28.29 3.18
1709 2111 4.391830 ACATACGACGCAAAATGAGTGAAT 59.608 37.500 0.00 0.00 28.29 2.57
1710 2112 3.455619 ACGACGCAAAATGAGTGAATC 57.544 42.857 0.00 0.00 28.29 2.52
1711 2113 3.067106 ACGACGCAAAATGAGTGAATCT 58.933 40.909 0.00 0.00 28.29 2.40
1712 2114 4.242475 ACGACGCAAAATGAGTGAATCTA 58.758 39.130 0.00 0.00 28.29 1.98
1713 2115 4.091509 ACGACGCAAAATGAGTGAATCTAC 59.908 41.667 0.00 0.00 28.29 2.59
1714 2116 4.091365 CGACGCAAAATGAGTGAATCTACA 59.909 41.667 0.00 0.00 28.29 2.74
1715 2117 5.220472 CGACGCAAAATGAGTGAATCTACAT 60.220 40.000 0.00 0.00 28.29 2.29
1716 2118 6.500684 ACGCAAAATGAGTGAATCTACATT 57.499 33.333 0.00 0.00 34.99 2.71
1717 2119 6.913170 ACGCAAAATGAGTGAATCTACATTT 58.087 32.000 0.00 0.00 42.25 2.32
1718 2120 7.370383 ACGCAAAATGAGTGAATCTACATTTT 58.630 30.769 0.00 0.00 46.58 1.82
1719 2121 8.511321 ACGCAAAATGAGTGAATCTACATTTTA 58.489 29.630 17.18 0.00 45.06 1.52
1720 2122 9.340695 CGCAAAATGAGTGAATCTACATTTTAA 57.659 29.630 17.18 0.00 45.06 1.52
1741 2143 8.780846 TTTAAAATATGTCTACACACATCCGT 57.219 30.769 0.00 0.00 38.07 4.69
1742 2144 9.872721 TTTAAAATATGTCTACACACATCCGTA 57.127 29.630 0.00 0.00 38.07 4.02
1744 2146 7.946655 AAATATGTCTACACACATCCGTATG 57.053 36.000 0.00 0.00 38.07 2.39
1746 2148 4.794278 TGTCTACACACATCCGTATGTT 57.206 40.909 0.00 0.00 44.07 2.71
1747 2149 4.490743 TGTCTACACACATCCGTATGTTG 58.509 43.478 0.00 0.00 44.07 3.33
1748 2150 4.218852 TGTCTACACACATCCGTATGTTGA 59.781 41.667 9.19 0.00 44.07 3.18
1749 2151 4.798907 GTCTACACACATCCGTATGTTGAG 59.201 45.833 9.19 0.00 44.07 3.02
1750 2152 3.678056 ACACACATCCGTATGTTGAGT 57.322 42.857 9.19 0.00 44.07 3.41
1751 2153 3.585862 ACACACATCCGTATGTTGAGTC 58.414 45.455 9.19 0.00 44.07 3.36
1752 2154 2.930040 CACACATCCGTATGTTGAGTCC 59.070 50.000 0.00 0.00 44.07 3.85
1753 2155 2.565391 ACACATCCGTATGTTGAGTCCA 59.435 45.455 0.00 0.00 44.07 4.02
1754 2156 3.197766 ACACATCCGTATGTTGAGTCCAT 59.802 43.478 0.00 0.00 44.07 3.41
1755 2157 4.191544 CACATCCGTATGTTGAGTCCATT 58.808 43.478 0.00 0.00 44.07 3.16
1756 2158 4.635765 CACATCCGTATGTTGAGTCCATTT 59.364 41.667 0.00 0.00 44.07 2.32
1757 2159 4.635765 ACATCCGTATGTTGAGTCCATTTG 59.364 41.667 0.00 0.00 44.07 2.32
1758 2160 4.545208 TCCGTATGTTGAGTCCATTTGA 57.455 40.909 0.00 0.00 0.00 2.69
1759 2161 4.900684 TCCGTATGTTGAGTCCATTTGAA 58.099 39.130 0.00 0.00 0.00 2.69
1760 2162 5.309638 TCCGTATGTTGAGTCCATTTGAAA 58.690 37.500 0.00 0.00 0.00 2.69
1761 2163 5.943416 TCCGTATGTTGAGTCCATTTGAAAT 59.057 36.000 0.00 0.00 0.00 2.17
1762 2164 6.029607 CCGTATGTTGAGTCCATTTGAAATG 58.970 40.000 10.84 10.84 0.00 2.32
1763 2165 5.512788 CGTATGTTGAGTCCATTTGAAATGC 59.487 40.000 12.26 0.23 0.00 3.56
1764 2166 4.255833 TGTTGAGTCCATTTGAAATGCC 57.744 40.909 12.26 5.23 0.00 4.40
1765 2167 3.896888 TGTTGAGTCCATTTGAAATGCCT 59.103 39.130 12.26 9.70 0.00 4.75
1766 2168 5.076182 TGTTGAGTCCATTTGAAATGCCTA 58.924 37.500 12.26 0.00 0.00 3.93
1767 2169 5.538053 TGTTGAGTCCATTTGAAATGCCTAA 59.462 36.000 12.26 1.26 0.00 2.69
1768 2170 6.041409 TGTTGAGTCCATTTGAAATGCCTAAA 59.959 34.615 12.26 6.88 0.00 1.85
1769 2171 6.662865 TGAGTCCATTTGAAATGCCTAAAA 57.337 33.333 12.26 0.00 0.00 1.52
1770 2172 7.060383 TGAGTCCATTTGAAATGCCTAAAAA 57.940 32.000 12.26 0.00 0.00 1.94
1771 2173 7.153985 TGAGTCCATTTGAAATGCCTAAAAAG 58.846 34.615 12.26 0.00 0.00 2.27
1772 2174 7.015098 TGAGTCCATTTGAAATGCCTAAAAAGA 59.985 33.333 12.26 0.00 0.00 2.52
1773 2175 7.154656 AGTCCATTTGAAATGCCTAAAAAGAC 58.845 34.615 12.26 10.86 0.00 3.01
1774 2176 6.928492 GTCCATTTGAAATGCCTAAAAAGACA 59.072 34.615 12.26 0.00 0.00 3.41
1775 2177 7.440856 GTCCATTTGAAATGCCTAAAAAGACAA 59.559 33.333 12.26 0.00 0.00 3.18
1776 2178 7.656948 TCCATTTGAAATGCCTAAAAAGACAAG 59.343 33.333 12.26 0.00 0.00 3.16
1777 2179 7.442062 CCATTTGAAATGCCTAAAAAGACAAGT 59.558 33.333 12.26 0.00 0.00 3.16
1778 2180 9.474920 CATTTGAAATGCCTAAAAAGACAAGTA 57.525 29.630 4.82 0.00 0.00 2.24
1782 2184 9.474920 TGAAATGCCTAAAAAGACAAGTATTTG 57.525 29.630 0.00 0.00 40.24 2.32
1783 2185 8.831715 AAATGCCTAAAAAGACAAGTATTTGG 57.168 30.769 2.81 0.00 38.66 3.28
1784 2186 6.339587 TGCCTAAAAAGACAAGTATTTGGG 57.660 37.500 2.81 0.00 38.66 4.12
1785 2187 6.071984 TGCCTAAAAAGACAAGTATTTGGGA 58.928 36.000 2.81 0.82 35.98 4.37
1786 2188 6.551601 TGCCTAAAAAGACAAGTATTTGGGAA 59.448 34.615 2.81 0.00 35.98 3.97
1787 2189 6.866770 GCCTAAAAAGACAAGTATTTGGGAAC 59.133 38.462 2.81 0.00 35.98 3.62
1788 2190 7.081976 CCTAAAAAGACAAGTATTTGGGAACG 58.918 38.462 2.81 0.00 35.98 3.95
1789 2191 5.447624 AAAAGACAAGTATTTGGGAACGG 57.552 39.130 2.81 0.00 38.66 4.44
1790 2192 4.360951 AAGACAAGTATTTGGGAACGGA 57.639 40.909 2.81 0.00 38.66 4.69
1791 2193 3.939066 AGACAAGTATTTGGGAACGGAG 58.061 45.455 2.81 0.00 38.66 4.63
1792 2194 3.007635 GACAAGTATTTGGGAACGGAGG 58.992 50.000 2.81 0.00 38.66 4.30
1793 2195 2.290705 ACAAGTATTTGGGAACGGAGGG 60.291 50.000 2.81 0.00 38.66 4.30
1794 2196 1.961133 AGTATTTGGGAACGGAGGGA 58.039 50.000 0.00 0.00 0.00 4.20
1795 2197 1.838077 AGTATTTGGGAACGGAGGGAG 59.162 52.381 0.00 0.00 0.00 4.30
1796 2198 1.558294 GTATTTGGGAACGGAGGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
1863 2685 6.554334 TTGTCACTGTAATAGCAAAGGAAC 57.446 37.500 0.00 0.00 0.00 3.62
1869 2691 8.046708 TCACTGTAATAGCAAAGGAACACATAT 58.953 33.333 0.00 0.00 0.00 1.78
1898 2720 4.201763 GGAGTGCGATTGCTTTTAGAAGAG 60.202 45.833 6.47 0.00 43.34 2.85
1904 2726 6.037098 GCGATTGCTTTTAGAAGAGTCTAGA 58.963 40.000 0.00 0.00 36.53 2.43
1916 2738 6.905736 AGAAGAGTCTAGATGTGGATGTCTA 58.094 40.000 0.00 0.00 29.93 2.59
1918 2740 5.060506 AGAGTCTAGATGTGGATGTCTACG 58.939 45.833 0.00 0.00 0.00 3.51
2026 2848 5.904362 ATGAAAGACAAGGTAAGCATTCC 57.096 39.130 0.00 0.00 0.00 3.01
2167 3051 4.041567 TGGTAGCTCCTCAACTTTGAATCA 59.958 41.667 0.00 0.00 36.64 2.57
2177 3061 5.953183 TCAACTTTGAATCATAAATGCGCT 58.047 33.333 9.73 0.00 33.55 5.92
2183 3067 1.609208 ATCATAAATGCGCTGGGGAC 58.391 50.000 9.73 0.00 0.00 4.46
2270 3161 2.848678 ACTACAGATGAGTAGGGGCA 57.151 50.000 6.14 0.00 44.49 5.36
2285 3176 3.026694 AGGGGCAGAGATGTTAATTTGC 58.973 45.455 0.00 0.00 0.00 3.68
2287 3178 3.181483 GGGGCAGAGATGTTAATTTGCAG 60.181 47.826 0.00 0.00 33.42 4.41
2288 3179 3.445096 GGGCAGAGATGTTAATTTGCAGT 59.555 43.478 0.00 0.00 33.42 4.40
2289 3180 4.640201 GGGCAGAGATGTTAATTTGCAGTA 59.360 41.667 0.00 0.00 33.42 2.74
2290 3181 5.300286 GGGCAGAGATGTTAATTTGCAGTAT 59.700 40.000 0.00 0.00 33.42 2.12
2291 3182 6.486657 GGGCAGAGATGTTAATTTGCAGTATA 59.513 38.462 0.00 0.00 33.42 1.47
2292 3183 7.175641 GGGCAGAGATGTTAATTTGCAGTATAT 59.824 37.037 0.00 0.00 33.42 0.86
2293 3184 9.219603 GGCAGAGATGTTAATTTGCAGTATATA 57.780 33.333 0.00 0.00 33.42 0.86
2296 3187 9.442047 AGAGATGTTAATTTGCAGTATATAGGC 57.558 33.333 0.00 0.40 0.00 3.93
2373 3264 3.834231 ACCCCAAATCTGTTGAATCCTTG 59.166 43.478 0.00 0.00 0.00 3.61
2380 3271 4.365514 TCTGTTGAATCCTTGTTAGCCA 57.634 40.909 0.00 0.00 0.00 4.75
2382 3273 5.324409 TCTGTTGAATCCTTGTTAGCCAAT 58.676 37.500 0.00 0.00 31.20 3.16
2388 3279 5.127519 TGAATCCTTGTTAGCCAATTCCATG 59.872 40.000 0.00 0.00 31.20 3.66
2399 3290 3.432467 GCCAATTCCATGCATCCAATGAA 60.432 43.478 0.00 0.00 0.00 2.57
2412 3303 5.685861 GCATCCAATGAACTCATGTCCTAGA 60.686 44.000 0.00 0.00 36.56 2.43
2417 3308 5.606348 ATGAACTCATGTCCTAGAAGGTC 57.394 43.478 0.00 0.00 34.18 3.85
2434 3325 2.618053 GGTCGAAACCACTATGACAGG 58.382 52.381 0.00 0.00 45.68 4.00
2486 3377 3.429043 CCATTGGCACATCAACTGC 57.571 52.632 0.00 0.00 39.30 4.40
2577 3468 7.382898 TCAGTTAACAAGAGCACACACATATA 58.617 34.615 8.61 0.00 0.00 0.86
2579 3470 8.118607 CAGTTAACAAGAGCACACACATATATG 58.881 37.037 11.29 11.29 0.00 1.78
2581 3472 9.093970 GTTAACAAGAGCACACACATATATGTA 57.906 33.333 17.86 0.00 39.39 2.29
2583 3474 7.719778 ACAAGAGCACACACATATATGTATG 57.280 36.000 20.13 20.13 40.83 2.39
2585 3476 7.439356 ACAAGAGCACACACATATATGTATGTC 59.561 37.037 23.65 18.09 44.38 3.06
2586 3477 7.054491 AGAGCACACACATATATGTATGTCA 57.946 36.000 23.65 0.00 44.38 3.58
2587 3478 7.674120 AGAGCACACACATATATGTATGTCAT 58.326 34.615 23.65 16.08 44.38 3.06
2588 3479 7.601508 AGAGCACACACATATATGTATGTCATG 59.398 37.037 23.65 15.34 44.38 3.07
2589 3480 6.652062 AGCACACACATATATGTATGTCATGG 59.348 38.462 23.65 14.99 44.38 3.66
2590 3481 6.427853 GCACACACATATATGTATGTCATGGT 59.572 38.462 23.65 10.34 44.38 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.305928 TGGGTCAACATGTTGGAGTTG 58.694 47.619 32.54 12.19 44.84 3.16
1 2 2.746279 TGGGTCAACATGTTGGAGTT 57.254 45.000 32.54 0.00 40.78 3.01
2 3 2.746279 TTGGGTCAACATGTTGGAGT 57.254 45.000 32.54 0.00 40.78 3.85
3 4 3.861886 GCATTTGGGTCAACATGTTGGAG 60.862 47.826 32.54 12.74 40.78 3.86
4 5 2.036992 GCATTTGGGTCAACATGTTGGA 59.963 45.455 32.54 19.29 40.78 3.53
5 6 2.224233 TGCATTTGGGTCAACATGTTGG 60.224 45.455 32.54 17.86 40.78 3.77
6 7 2.801679 GTGCATTTGGGTCAACATGTTG 59.198 45.455 29.01 29.01 41.71 3.33
7 8 2.545532 CGTGCATTTGGGTCAACATGTT 60.546 45.455 4.92 4.92 0.00 2.71
8 9 1.000385 CGTGCATTTGGGTCAACATGT 60.000 47.619 0.00 0.00 0.00 3.21
9 10 1.000385 ACGTGCATTTGGGTCAACATG 60.000 47.619 0.00 0.00 0.00 3.21
10 11 1.000385 CACGTGCATTTGGGTCAACAT 60.000 47.619 0.82 0.00 0.00 2.71
11 12 0.383590 CACGTGCATTTGGGTCAACA 59.616 50.000 0.82 0.00 0.00 3.33
12 13 0.665835 TCACGTGCATTTGGGTCAAC 59.334 50.000 11.67 0.00 0.00 3.18
13 14 0.950836 CTCACGTGCATTTGGGTCAA 59.049 50.000 11.67 0.00 0.00 3.18
14 15 1.514678 GCTCACGTGCATTTGGGTCA 61.515 55.000 11.67 0.00 0.00 4.02
15 16 1.210155 GCTCACGTGCATTTGGGTC 59.790 57.895 11.67 0.00 0.00 4.46
16 17 0.823356 AAGCTCACGTGCATTTGGGT 60.823 50.000 11.67 0.00 34.99 4.51
17 18 0.314935 AAAGCTCACGTGCATTTGGG 59.685 50.000 11.67 0.00 34.99 4.12
18 19 1.269206 ACAAAGCTCACGTGCATTTGG 60.269 47.619 27.86 16.36 36.43 3.28
19 20 2.046313 GACAAAGCTCACGTGCATTTG 58.954 47.619 25.24 25.24 37.24 2.32
20 21 1.949525 AGACAAAGCTCACGTGCATTT 59.050 42.857 11.67 8.55 34.99 2.32
21 22 1.597742 AGACAAAGCTCACGTGCATT 58.402 45.000 11.67 2.10 34.99 3.56
22 23 1.597742 AAGACAAAGCTCACGTGCAT 58.402 45.000 11.67 0.00 34.99 3.96
23 24 1.378531 AAAGACAAAGCTCACGTGCA 58.621 45.000 11.67 0.00 34.99 4.57
24 25 2.475200 AAAAGACAAAGCTCACGTGC 57.525 45.000 11.67 0.00 0.00 5.34
41 42 1.874872 GTCGATCCAACCGGACAAAAA 59.125 47.619 9.46 0.00 46.79 1.94
42 43 1.071071 AGTCGATCCAACCGGACAAAA 59.929 47.619 9.46 0.00 46.79 2.44
43 44 0.682852 AGTCGATCCAACCGGACAAA 59.317 50.000 9.46 0.00 46.79 2.83
44 45 0.245539 GAGTCGATCCAACCGGACAA 59.754 55.000 9.46 0.00 46.79 3.18
45 46 1.888018 GAGTCGATCCAACCGGACA 59.112 57.895 9.46 0.00 46.79 4.02
46 47 1.226603 CGAGTCGATCCAACCGGAC 60.227 63.158 9.46 0.00 46.79 4.79
48 49 1.226603 GACGAGTCGATCCAACCGG 60.227 63.158 21.50 0.00 0.00 5.28
49 50 1.226603 GGACGAGTCGATCCAACCG 60.227 63.158 21.50 0.00 34.87 4.44
50 51 1.226603 CGGACGAGTCGATCCAACC 60.227 63.158 21.50 10.75 34.35 3.77
51 52 1.872679 GCGGACGAGTCGATCCAAC 60.873 63.158 21.50 12.64 34.35 3.77
52 53 2.488355 GCGGACGAGTCGATCCAA 59.512 61.111 21.50 0.00 34.35 3.53
53 54 3.515286 GGCGGACGAGTCGATCCA 61.515 66.667 21.50 0.00 34.35 3.41
54 55 4.267503 GGGCGGACGAGTCGATCC 62.268 72.222 21.50 19.65 0.00 3.36
55 56 4.267503 GGGGCGGACGAGTCGATC 62.268 72.222 21.50 12.61 0.00 3.69
56 57 4.816984 AGGGGCGGACGAGTCGAT 62.817 66.667 21.50 3.12 0.00 3.59
58 59 3.584868 AAAAGGGGCGGACGAGTCG 62.585 63.158 11.85 11.85 0.00 4.18
59 60 2.033194 CAAAAGGGGCGGACGAGTC 61.033 63.158 0.00 0.00 0.00 3.36
60 61 2.032071 CAAAAGGGGCGGACGAGT 59.968 61.111 0.00 0.00 0.00 4.18
61 62 3.431725 GCAAAAGGGGCGGACGAG 61.432 66.667 0.00 0.00 0.00 4.18
68 69 2.282887 TCCTTCCGCAAAAGGGGC 60.283 61.111 12.81 0.00 45.03 5.80
69 70 0.825840 TTGTCCTTCCGCAAAAGGGG 60.826 55.000 12.81 0.00 45.03 4.79
70 71 0.598065 CTTGTCCTTCCGCAAAAGGG 59.402 55.000 12.81 0.00 45.03 3.95
71 72 0.039165 GCTTGTCCTTCCGCAAAAGG 60.039 55.000 7.63 7.63 46.11 3.11
72 73 0.667993 TGCTTGTCCTTCCGCAAAAG 59.332 50.000 0.00 0.00 0.00 2.27
73 74 1.107114 TTGCTTGTCCTTCCGCAAAA 58.893 45.000 0.00 0.00 39.19 2.44
74 75 0.383949 GTTGCTTGTCCTTCCGCAAA 59.616 50.000 0.00 0.00 43.11 3.68
75 76 0.749818 TGTTGCTTGTCCTTCCGCAA 60.750 50.000 0.00 0.00 39.77 4.85
76 77 0.749818 TTGTTGCTTGTCCTTCCGCA 60.750 50.000 0.00 0.00 0.00 5.69
77 78 0.317854 GTTGTTGCTTGTCCTTCCGC 60.318 55.000 0.00 0.00 0.00 5.54
78 79 1.002468 CTGTTGTTGCTTGTCCTTCCG 60.002 52.381 0.00 0.00 0.00 4.30
79 80 1.338020 CCTGTTGTTGCTTGTCCTTCC 59.662 52.381 0.00 0.00 0.00 3.46
80 81 2.297701 TCCTGTTGTTGCTTGTCCTTC 58.702 47.619 0.00 0.00 0.00 3.46
81 82 2.435372 TCCTGTTGTTGCTTGTCCTT 57.565 45.000 0.00 0.00 0.00 3.36
82 83 2.664402 ATCCTGTTGTTGCTTGTCCT 57.336 45.000 0.00 0.00 0.00 3.85
83 84 4.458989 TCAATATCCTGTTGTTGCTTGTCC 59.541 41.667 0.00 0.00 0.00 4.02
84 85 5.627499 TCAATATCCTGTTGTTGCTTGTC 57.373 39.130 0.00 0.00 0.00 3.18
85 86 5.047802 CCTTCAATATCCTGTTGTTGCTTGT 60.048 40.000 0.00 0.00 0.00 3.16
86 87 5.183713 TCCTTCAATATCCTGTTGTTGCTTG 59.816 40.000 0.00 0.00 0.00 4.01
87 88 5.183904 GTCCTTCAATATCCTGTTGTTGCTT 59.816 40.000 0.00 0.00 0.00 3.91
88 89 4.702131 GTCCTTCAATATCCTGTTGTTGCT 59.298 41.667 0.00 0.00 0.00 3.91
89 90 4.437390 CGTCCTTCAATATCCTGTTGTTGC 60.437 45.833 0.00 0.00 0.00 4.17
90 91 4.695455 ACGTCCTTCAATATCCTGTTGTTG 59.305 41.667 0.00 0.00 0.00 3.33
91 92 4.906618 ACGTCCTTCAATATCCTGTTGTT 58.093 39.130 0.00 0.00 0.00 2.83
92 93 4.020573 TGACGTCCTTCAATATCCTGTTGT 60.021 41.667 14.12 0.00 0.00 3.32
93 94 4.330074 GTGACGTCCTTCAATATCCTGTTG 59.670 45.833 14.12 0.00 0.00 3.33
94 95 4.020573 TGTGACGTCCTTCAATATCCTGTT 60.021 41.667 14.12 0.00 0.00 3.16
95 96 3.513912 TGTGACGTCCTTCAATATCCTGT 59.486 43.478 14.12 0.00 0.00 4.00
96 97 3.865745 GTGTGACGTCCTTCAATATCCTG 59.134 47.826 14.12 0.00 0.00 3.86
97 98 3.769844 AGTGTGACGTCCTTCAATATCCT 59.230 43.478 14.12 0.73 0.00 3.24
98 99 4.113354 GAGTGTGACGTCCTTCAATATCC 58.887 47.826 14.12 0.00 0.00 2.59
99 100 5.000012 AGAGTGTGACGTCCTTCAATATC 58.000 43.478 14.12 8.68 0.00 1.63
100 101 4.142138 GGAGAGTGTGACGTCCTTCAATAT 60.142 45.833 14.12 6.45 0.00 1.28
101 102 3.192844 GGAGAGTGTGACGTCCTTCAATA 59.807 47.826 14.12 0.00 0.00 1.90
102 103 2.028930 GGAGAGTGTGACGTCCTTCAAT 60.029 50.000 14.12 8.99 0.00 2.57
103 104 1.340248 GGAGAGTGTGACGTCCTTCAA 59.660 52.381 14.12 0.00 0.00 2.69
104 105 0.959553 GGAGAGTGTGACGTCCTTCA 59.040 55.000 14.12 7.08 0.00 3.02
105 106 0.244178 GGGAGAGTGTGACGTCCTTC 59.756 60.000 14.12 5.41 0.00 3.46
106 107 0.178958 AGGGAGAGTGTGACGTCCTT 60.179 55.000 14.12 0.00 0.00 3.36
107 108 0.609681 GAGGGAGAGTGTGACGTCCT 60.610 60.000 14.12 2.34 0.00 3.85
108 109 1.596895 GGAGGGAGAGTGTGACGTCC 61.597 65.000 14.12 5.06 0.00 4.79
109 110 1.884444 GGAGGGAGAGTGTGACGTC 59.116 63.158 9.11 9.11 0.00 4.34
110 111 1.972223 CGGAGGGAGAGTGTGACGT 60.972 63.158 0.00 0.00 0.00 4.34
111 112 2.878429 CGGAGGGAGAGTGTGACG 59.122 66.667 0.00 0.00 0.00 4.35
128 129 3.543884 TGGAACACGGCTAATCACC 57.456 52.632 0.00 0.00 0.00 4.02
148 149 4.510340 GCTCGGACAACAGAAGACTAAAAA 59.490 41.667 0.00 0.00 0.00 1.94
149 150 4.056050 GCTCGGACAACAGAAGACTAAAA 58.944 43.478 0.00 0.00 0.00 1.52
150 151 3.321111 AGCTCGGACAACAGAAGACTAAA 59.679 43.478 0.00 0.00 0.00 1.85
151 152 2.891580 AGCTCGGACAACAGAAGACTAA 59.108 45.455 0.00 0.00 0.00 2.24
152 153 2.488545 GAGCTCGGACAACAGAAGACTA 59.511 50.000 0.00 0.00 0.00 2.59
153 154 1.271102 GAGCTCGGACAACAGAAGACT 59.729 52.381 0.00 0.00 0.00 3.24
154 155 1.271102 AGAGCTCGGACAACAGAAGAC 59.729 52.381 8.37 0.00 0.00 3.01
155 156 1.621992 AGAGCTCGGACAACAGAAGA 58.378 50.000 8.37 0.00 0.00 2.87
156 157 3.577649 TTAGAGCTCGGACAACAGAAG 57.422 47.619 8.37 0.00 0.00 2.85
157 158 3.321111 ACTTTAGAGCTCGGACAACAGAA 59.679 43.478 8.37 0.00 0.00 3.02
158 159 2.891580 ACTTTAGAGCTCGGACAACAGA 59.108 45.455 8.37 0.00 0.00 3.41
159 160 3.246619 GACTTTAGAGCTCGGACAACAG 58.753 50.000 8.37 1.65 0.00 3.16
160 161 2.626266 TGACTTTAGAGCTCGGACAACA 59.374 45.455 8.37 3.95 0.00 3.33
161 162 2.987821 GTGACTTTAGAGCTCGGACAAC 59.012 50.000 8.37 1.26 0.00 3.32
162 163 2.029290 GGTGACTTTAGAGCTCGGACAA 60.029 50.000 8.37 0.00 0.00 3.18
163 164 1.544691 GGTGACTTTAGAGCTCGGACA 59.455 52.381 8.37 4.35 0.00 4.02
164 165 1.544691 TGGTGACTTTAGAGCTCGGAC 59.455 52.381 8.37 1.83 0.00 4.79
165 166 1.919240 TGGTGACTTTAGAGCTCGGA 58.081 50.000 8.37 0.00 0.00 4.55
166 167 2.482142 GGATGGTGACTTTAGAGCTCGG 60.482 54.545 8.37 2.91 0.00 4.63
167 168 2.796383 CGGATGGTGACTTTAGAGCTCG 60.796 54.545 8.37 0.00 0.00 5.03
168 169 2.482142 CCGGATGGTGACTTTAGAGCTC 60.482 54.545 5.27 5.27 0.00 4.09
169 170 1.482593 CCGGATGGTGACTTTAGAGCT 59.517 52.381 0.00 0.00 0.00 4.09
170 171 1.941325 CCGGATGGTGACTTTAGAGC 58.059 55.000 0.00 0.00 0.00 4.09
182 183 3.781307 TTCTGCGGGACCGGATGG 61.781 66.667 9.46 0.00 39.39 3.51
183 184 1.672854 TAGTTCTGCGGGACCGGATG 61.673 60.000 9.46 4.33 39.39 3.51
184 185 1.380785 TAGTTCTGCGGGACCGGAT 60.381 57.895 9.46 0.00 39.39 4.18
185 186 2.036098 TAGTTCTGCGGGACCGGA 59.964 61.111 9.46 9.02 40.19 5.14
186 187 2.183555 GTAGTTCTGCGGGACCGG 59.816 66.667 13.21 0.00 40.19 5.28
187 188 1.153823 CAGTAGTTCTGCGGGACCG 60.154 63.158 6.35 6.35 43.09 4.79
188 189 4.913126 CAGTAGTTCTGCGGGACC 57.087 61.111 0.00 0.00 37.36 4.46
195 196 1.754226 GGAGGAGGAGCAGTAGTTCTG 59.246 57.143 0.00 0.00 46.12 3.02
196 197 1.342574 GGGAGGAGGAGCAGTAGTTCT 60.343 57.143 0.00 0.00 0.00 3.01
197 198 1.116308 GGGAGGAGGAGCAGTAGTTC 58.884 60.000 0.00 0.00 0.00 3.01
198 199 0.713579 AGGGAGGAGGAGCAGTAGTT 59.286 55.000 0.00 0.00 0.00 2.24
199 200 0.713579 AAGGGAGGAGGAGCAGTAGT 59.286 55.000 0.00 0.00 0.00 2.73
200 201 1.063266 AGAAGGGAGGAGGAGCAGTAG 60.063 57.143 0.00 0.00 0.00 2.57
201 202 1.011595 AGAAGGGAGGAGGAGCAGTA 58.988 55.000 0.00 0.00 0.00 2.74
202 203 0.325203 GAGAAGGGAGGAGGAGCAGT 60.325 60.000 0.00 0.00 0.00 4.40
203 204 0.325110 TGAGAAGGGAGGAGGAGCAG 60.325 60.000 0.00 0.00 0.00 4.24
204 205 0.325110 CTGAGAAGGGAGGAGGAGCA 60.325 60.000 0.00 0.00 0.00 4.26
205 206 1.685355 GCTGAGAAGGGAGGAGGAGC 61.685 65.000 0.00 0.00 0.00 4.70
206 207 0.325110 TGCTGAGAAGGGAGGAGGAG 60.325 60.000 0.00 0.00 0.00 3.69
207 208 0.341258 ATGCTGAGAAGGGAGGAGGA 59.659 55.000 0.00 0.00 0.00 3.71
208 209 0.469070 CATGCTGAGAAGGGAGGAGG 59.531 60.000 0.00 0.00 0.00 4.30
209 210 0.179051 GCATGCTGAGAAGGGAGGAG 60.179 60.000 11.37 0.00 0.00 3.69
210 211 0.619832 AGCATGCTGAGAAGGGAGGA 60.620 55.000 21.98 0.00 0.00 3.71
211 212 0.255318 AAGCATGCTGAGAAGGGAGG 59.745 55.000 23.48 0.00 0.00 4.30
212 213 1.666054 GAAGCATGCTGAGAAGGGAG 58.334 55.000 23.48 0.00 0.00 4.30
213 214 0.107993 CGAAGCATGCTGAGAAGGGA 60.108 55.000 23.48 0.00 0.00 4.20
214 215 1.094073 CCGAAGCATGCTGAGAAGGG 61.094 60.000 23.48 12.24 0.00 3.95
215 216 0.392193 ACCGAAGCATGCTGAGAAGG 60.392 55.000 23.48 20.71 0.00 3.46
216 217 2.299993 TACCGAAGCATGCTGAGAAG 57.700 50.000 23.48 11.20 0.00 2.85
217 218 2.554142 CATACCGAAGCATGCTGAGAA 58.446 47.619 23.48 10.08 0.00 2.87
218 219 1.202568 CCATACCGAAGCATGCTGAGA 60.203 52.381 23.48 5.72 0.00 3.27
219 220 1.224075 CCATACCGAAGCATGCTGAG 58.776 55.000 23.48 17.76 0.00 3.35
220 221 0.815213 GCCATACCGAAGCATGCTGA 60.815 55.000 23.48 4.94 0.00 4.26
221 222 1.650912 GCCATACCGAAGCATGCTG 59.349 57.895 23.48 11.76 0.00 4.41
222 223 1.526917 GGCCATACCGAAGCATGCT 60.527 57.895 16.30 16.30 0.00 3.79
223 224 2.555547 GGGCCATACCGAAGCATGC 61.556 63.158 10.51 10.51 40.62 4.06
224 225 1.898574 GGGGCCATACCGAAGCATG 60.899 63.158 4.39 0.00 40.62 4.06
225 226 1.719063 ATGGGGCCATACCGAAGCAT 61.719 55.000 4.39 0.00 40.62 3.79
226 227 2.337879 GATGGGGCCATACCGAAGCA 62.338 60.000 4.39 0.00 40.62 3.91
227 228 1.600916 GATGGGGCCATACCGAAGC 60.601 63.158 4.39 0.00 40.62 3.86
228 229 1.073199 GGATGGGGCCATACCGAAG 59.927 63.158 4.39 0.00 40.62 3.79
229 230 2.813726 CGGATGGGGCCATACCGAA 61.814 63.158 23.20 0.00 43.22 4.30
230 231 3.238497 CGGATGGGGCCATACCGA 61.238 66.667 23.20 0.00 43.22 4.69
231 232 2.124507 ATTCGGATGGGGCCATACCG 62.125 60.000 22.14 22.14 42.61 4.02
232 233 0.112412 AATTCGGATGGGGCCATACC 59.888 55.000 4.39 3.79 36.70 2.73
233 234 1.613437 CAAATTCGGATGGGGCCATAC 59.387 52.381 4.39 0.00 36.70 2.39
234 235 1.993956 CAAATTCGGATGGGGCCATA 58.006 50.000 4.39 0.00 36.70 2.74
235 236 1.402107 GCAAATTCGGATGGGGCCAT 61.402 55.000 4.39 0.00 39.69 4.40
236 237 2.057408 GCAAATTCGGATGGGGCCA 61.057 57.895 4.39 0.00 0.00 5.36
237 238 1.329913 AAGCAAATTCGGATGGGGCC 61.330 55.000 0.00 0.00 0.00 5.80
238 239 0.536724 AAAGCAAATTCGGATGGGGC 59.463 50.000 0.00 0.00 0.00 5.80
239 240 1.824230 TCAAAGCAAATTCGGATGGGG 59.176 47.619 0.00 0.00 0.00 4.96
240 241 2.417243 GGTCAAAGCAAATTCGGATGGG 60.417 50.000 0.00 0.00 0.00 4.00
241 242 2.417243 GGGTCAAAGCAAATTCGGATGG 60.417 50.000 0.00 0.00 0.00 3.51
242 243 2.230992 TGGGTCAAAGCAAATTCGGATG 59.769 45.455 0.00 0.00 0.00 3.51
243 244 2.524306 TGGGTCAAAGCAAATTCGGAT 58.476 42.857 0.00 0.00 0.00 4.18
244 245 1.988293 TGGGTCAAAGCAAATTCGGA 58.012 45.000 0.00 0.00 0.00 4.55
245 246 2.403259 GTTGGGTCAAAGCAAATTCGG 58.597 47.619 0.00 0.00 0.00 4.30
246 247 2.403259 GGTTGGGTCAAAGCAAATTCG 58.597 47.619 0.00 0.00 0.00 3.34
247 248 2.368548 AGGGTTGGGTCAAAGCAAATTC 59.631 45.455 0.00 0.00 0.00 2.17
248 249 2.368548 GAGGGTTGGGTCAAAGCAAATT 59.631 45.455 0.00 0.00 0.00 1.82
249 250 1.970640 GAGGGTTGGGTCAAAGCAAAT 59.029 47.619 0.00 0.00 0.00 2.32
250 251 1.342474 TGAGGGTTGGGTCAAAGCAAA 60.342 47.619 0.00 0.00 0.00 3.68
251 252 0.260230 TGAGGGTTGGGTCAAAGCAA 59.740 50.000 0.00 0.00 0.00 3.91
252 253 0.482446 ATGAGGGTTGGGTCAAAGCA 59.518 50.000 0.00 0.00 0.00 3.91
253 254 1.177401 GATGAGGGTTGGGTCAAAGC 58.823 55.000 0.00 0.00 0.00 3.51
254 255 2.440409 CAGATGAGGGTTGGGTCAAAG 58.560 52.381 0.00 0.00 0.00 2.77
255 256 1.075374 CCAGATGAGGGTTGGGTCAAA 59.925 52.381 0.00 0.00 0.00 2.69
256 257 0.698238 CCAGATGAGGGTTGGGTCAA 59.302 55.000 0.00 0.00 0.00 3.18
257 258 0.475632 ACCAGATGAGGGTTGGGTCA 60.476 55.000 0.00 0.00 34.10 4.02
258 259 0.035056 CACCAGATGAGGGTTGGGTC 60.035 60.000 0.00 0.00 36.19 4.46
259 260 1.500783 CCACCAGATGAGGGTTGGGT 61.501 60.000 0.00 0.00 36.19 4.51
260 261 1.304282 CCACCAGATGAGGGTTGGG 59.696 63.158 0.00 0.00 36.19 4.12
261 262 0.322816 CACCACCAGATGAGGGTTGG 60.323 60.000 0.00 0.00 36.19 3.77
262 263 0.401738 ACACCACCAGATGAGGGTTG 59.598 55.000 0.00 0.00 36.19 3.77
263 264 0.693049 GACACCACCAGATGAGGGTT 59.307 55.000 0.00 0.00 36.19 4.11
264 265 1.201429 GGACACCACCAGATGAGGGT 61.201 60.000 0.00 0.00 39.88 4.34
265 266 1.200760 TGGACACCACCAGATGAGGG 61.201 60.000 0.00 0.00 34.77 4.30
266 267 0.914644 ATGGACACCACCAGATGAGG 59.085 55.000 0.00 0.00 43.49 3.86
267 268 1.472201 CGATGGACACCACCAGATGAG 60.472 57.143 0.00 0.00 43.49 2.90
268 269 0.536724 CGATGGACACCACCAGATGA 59.463 55.000 0.00 0.00 43.49 2.92
269 270 0.250234 ACGATGGACACCACCAGATG 59.750 55.000 0.00 0.00 43.49 2.90
270 271 0.984230 AACGATGGACACCACCAGAT 59.016 50.000 0.00 0.00 43.49 2.90
271 272 0.034756 CAACGATGGACACCACCAGA 59.965 55.000 0.00 0.00 43.49 3.86
272 273 0.250295 ACAACGATGGACACCACCAG 60.250 55.000 0.00 0.00 43.49 4.00
273 274 1.001520 CTACAACGATGGACACCACCA 59.998 52.381 0.00 0.00 44.41 4.17
274 275 1.274167 TCTACAACGATGGACACCACC 59.726 52.381 0.00 0.00 35.80 4.61
275 276 2.736144 TCTACAACGATGGACACCAC 57.264 50.000 0.00 0.00 35.80 4.16
276 277 2.611971 GCTTCTACAACGATGGACACCA 60.612 50.000 0.00 0.00 38.19 4.17
277 278 2.000447 GCTTCTACAACGATGGACACC 59.000 52.381 0.00 0.00 0.00 4.16
278 279 2.000447 GGCTTCTACAACGATGGACAC 59.000 52.381 0.00 0.00 0.00 3.67
279 280 1.621317 TGGCTTCTACAACGATGGACA 59.379 47.619 0.00 0.00 0.00 4.02
280 281 2.380084 TGGCTTCTACAACGATGGAC 57.620 50.000 0.00 0.00 0.00 4.02
281 282 3.704566 AGTATGGCTTCTACAACGATGGA 59.295 43.478 0.00 0.00 0.00 3.41
282 283 4.060038 AGTATGGCTTCTACAACGATGG 57.940 45.455 0.00 0.00 0.00 3.51
283 284 8.864024 CATATAAGTATGGCTTCTACAACGATG 58.136 37.037 0.00 0.00 38.57 3.84
284 285 8.585881 ACATATAAGTATGGCTTCTACAACGAT 58.414 33.333 0.00 0.00 41.64 3.73
285 286 7.948357 ACATATAAGTATGGCTTCTACAACGA 58.052 34.615 0.00 0.00 41.64 3.85
286 287 9.856488 ATACATATAAGTATGGCTTCTACAACG 57.144 33.333 0.00 0.00 41.64 4.10
367 368 1.918800 CCCTTCCACTTCTCCCGGT 60.919 63.158 0.00 0.00 0.00 5.28
370 371 1.064825 TTCACCCTTCCACTTCTCCC 58.935 55.000 0.00 0.00 0.00 4.30
374 375 5.529581 TTTGAATTTCACCCTTCCACTTC 57.470 39.130 0.00 0.00 0.00 3.01
416 417 9.919416 TGATGAATAGATCAGAAATTTTACCCA 57.081 29.630 0.00 0.00 42.53 4.51
425 426 9.106070 CATGACTGTTGATGAATAGATCAGAAA 57.894 33.333 0.00 0.00 42.53 2.52
430 431 7.871973 ACTAGCATGACTGTTGATGAATAGATC 59.128 37.037 0.00 0.00 0.00 2.75
444 445 8.877808 TGATGTTCTTTATACTAGCATGACTG 57.122 34.615 0.00 0.00 0.00 3.51
616 722 5.492895 TCCTAGCCAATTATTTTCGTGTCA 58.507 37.500 0.00 0.00 0.00 3.58
749 872 6.883744 AGTTTCCTAGCCAATTGTTTTCAAA 58.116 32.000 4.43 0.00 43.39 2.69
750 873 6.097554 TGAGTTTCCTAGCCAATTGTTTTCAA 59.902 34.615 4.43 0.00 44.33 2.69
752 875 6.084326 TGAGTTTCCTAGCCAATTGTTTTC 57.916 37.500 4.43 0.00 0.00 2.29
754 877 6.152831 GGTATGAGTTTCCTAGCCAATTGTTT 59.847 38.462 4.43 0.00 0.00 2.83
757 880 5.192927 TGGTATGAGTTTCCTAGCCAATTG 58.807 41.667 0.00 0.00 0.00 2.32
760 883 4.919774 TTGGTATGAGTTTCCTAGCCAA 57.080 40.909 0.00 0.00 33.05 4.52
761 884 4.919774 TTTGGTATGAGTTTCCTAGCCA 57.080 40.909 0.00 0.00 0.00 4.75
762 885 5.685728 AGATTTGGTATGAGTTTCCTAGCC 58.314 41.667 0.00 0.00 0.00 3.93
763 886 6.931840 CCTAGATTTGGTATGAGTTTCCTAGC 59.068 42.308 0.00 0.00 0.00 3.42
764 887 7.290248 TCCCTAGATTTGGTATGAGTTTCCTAG 59.710 40.741 0.00 0.00 0.00 3.02
765 888 7.070821 GTCCCTAGATTTGGTATGAGTTTCCTA 59.929 40.741 0.00 0.00 0.00 2.94
766 889 5.970640 TCCCTAGATTTGGTATGAGTTTCCT 59.029 40.000 0.00 0.00 0.00 3.36
768 891 5.753921 CGTCCCTAGATTTGGTATGAGTTTC 59.246 44.000 0.00 0.00 0.00 2.78
788 913 0.321298 TAACCCTTCTGCTTGCGTCC 60.321 55.000 0.00 0.00 0.00 4.79
840 972 7.269477 AGACATGTTTTTCTTCTTCTCCTTG 57.731 36.000 0.00 0.00 0.00 3.61
900 1057 6.633500 TTTTGACCATTTGAGTAGTTCAGG 57.367 37.500 0.00 0.00 37.07 3.86
908 1065 9.643693 GTTGATGATTATTTTGACCATTTGAGT 57.356 29.630 0.00 0.00 0.00 3.41
909 1066 9.865321 AGTTGATGATTATTTTGACCATTTGAG 57.135 29.630 0.00 0.00 0.00 3.02
910 1067 9.642327 CAGTTGATGATTATTTTGACCATTTGA 57.358 29.630 0.00 0.00 0.00 2.69
911 1068 8.385111 GCAGTTGATGATTATTTTGACCATTTG 58.615 33.333 0.00 0.00 0.00 2.32
924 1108 1.667212 CGCTGCTGCAGTTGATGATTA 59.333 47.619 28.50 0.00 39.64 1.75
925 1109 0.450583 CGCTGCTGCAGTTGATGATT 59.549 50.000 28.50 0.00 39.64 2.57
927 1111 2.683859 GCGCTGCTGCAGTTGATGA 61.684 57.895 28.50 0.00 39.64 2.92
928 1112 2.202440 GCGCTGCTGCAGTTGATG 60.202 61.111 28.50 15.25 39.64 3.07
929 1113 3.796443 CGCGCTGCTGCAGTTGAT 61.796 61.111 28.50 0.00 39.64 2.57
1004 1192 2.654912 GGAGGTTGTTGTCGTCGCG 61.655 63.158 0.00 0.00 0.00 5.87
1120 1373 0.108138 GGATGGGTGAGTTCCAGTCG 60.108 60.000 0.00 0.00 37.75 4.18
1151 1436 2.927477 AGCATGTGGATGTAAACGTACG 59.073 45.455 15.01 15.01 32.40 3.67
1152 1437 4.032900 CAGAGCATGTGGATGTAAACGTAC 59.967 45.833 0.00 0.00 31.50 3.67
1153 1438 4.180817 CAGAGCATGTGGATGTAAACGTA 58.819 43.478 0.00 0.00 31.50 3.57
1154 1439 3.002791 CAGAGCATGTGGATGTAAACGT 58.997 45.455 0.00 0.00 31.50 3.99
1163 1448 2.580815 CGGAGCAGAGCATGTGGA 59.419 61.111 0.00 0.00 0.00 4.02
1282 1571 2.264794 CGTAAGGTGGCCGCTTCT 59.735 61.111 17.49 2.24 0.00 2.85
1296 1585 4.403137 CCCGCGAACACGTCCGTA 62.403 66.667 8.23 0.00 0.00 4.02
1326 1618 0.815615 GGTGGCCGCATAGAAAGAGG 60.816 60.000 19.98 0.00 0.00 3.69
1401 1699 0.797249 CCAAGAACGCCGAGACTACG 60.797 60.000 0.00 0.00 0.00 3.51
1427 1746 2.970640 TGCCTCACATCATCTAGCATCT 59.029 45.455 0.00 0.00 0.00 2.90
1442 1766 0.698238 ACTAACCAATGCCTGCCTCA 59.302 50.000 0.00 0.00 0.00 3.86
1527 1910 9.842775 ACTGTAGTATGTACACAGCTACTTATA 57.157 33.333 22.63 10.33 38.10 0.98
1528 1911 8.622157 CACTGTAGTATGTACACAGCTACTTAT 58.378 37.037 22.63 12.39 38.10 1.73
1529 1912 7.066645 CCACTGTAGTATGTACACAGCTACTTA 59.933 40.741 22.63 11.02 38.10 2.24
1530 1913 6.127703 CCACTGTAGTATGTACACAGCTACTT 60.128 42.308 22.63 13.45 38.10 2.24
1531 1914 5.357314 CCACTGTAGTATGTACACAGCTACT 59.643 44.000 22.63 17.57 38.10 2.57
1532 1915 5.579718 CCACTGTAGTATGTACACAGCTAC 58.420 45.833 18.68 18.68 38.10 3.58
1545 1934 4.884668 AAAGCTTGTAGCCACTGTAGTA 57.115 40.909 0.00 0.00 43.77 1.82
1546 1935 3.771577 AAAGCTTGTAGCCACTGTAGT 57.228 42.857 0.00 0.00 43.77 2.73
1547 1936 4.319177 AGAAAAGCTTGTAGCCACTGTAG 58.681 43.478 0.00 0.00 43.77 2.74
1548 1937 4.351874 AGAAAAGCTTGTAGCCACTGTA 57.648 40.909 0.00 0.00 43.77 2.74
1549 1938 3.214696 AGAAAAGCTTGTAGCCACTGT 57.785 42.857 0.00 0.00 43.77 3.55
1573 1962 2.053244 CAGCTAACCATCTGATCCCCT 58.947 52.381 0.00 0.00 32.26 4.79
1581 1970 1.561076 TGCACCATCAGCTAACCATCT 59.439 47.619 0.00 0.00 0.00 2.90
1611 2000 8.794553 AGTACAGTAGAATCCATTCTTATACCG 58.205 37.037 7.12 0.00 44.28 4.02
1617 2006 6.206042 AGGGAGTACAGTAGAATCCATTCTT 58.794 40.000 7.12 0.00 44.28 2.52
1633 2035 4.892345 AGTATTTAGGAACGGAGGGAGTAC 59.108 45.833 0.00 0.00 0.00 2.73
1634 2036 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
1635 2037 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
1636 2038 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1637 2039 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1638 2040 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1639 2041 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1640 2042 7.668525 AAAAGACAAGTATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
1641 2043 9.211485 CTAAAAAGACAAGTATTTAGGAACGGA 57.789 33.333 0.00 0.00 33.69 4.69
1642 2044 9.211485 TCTAAAAAGACAAGTATTTAGGAACGG 57.789 33.333 0.00 0.00 36.48 4.44
1656 2058 9.787532 CACTTGTTGAAATCTCTAAAAAGACAA 57.212 29.630 0.00 0.00 0.00 3.18
1657 2059 9.173021 TCACTTGTTGAAATCTCTAAAAAGACA 57.827 29.630 0.00 0.00 0.00 3.41
1658 2060 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
1659 2061 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
1662 2064 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
1663 2065 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
1665 2067 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1666 2068 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1667 2069 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
1668 2070 7.328737 GTCGTATGTAGTCACTTGTTGAAATCT 59.671 37.037 0.00 0.00 35.39 2.40
1669 2071 7.445836 GTCGTATGTAGTCACTTGTTGAAATC 58.554 38.462 0.00 0.00 35.39 2.17
1670 2072 6.089016 CGTCGTATGTAGTCACTTGTTGAAAT 59.911 38.462 0.00 0.00 35.39 2.17
1671 2073 5.400188 CGTCGTATGTAGTCACTTGTTGAAA 59.600 40.000 0.00 0.00 35.39 2.69
1672 2074 4.913345 CGTCGTATGTAGTCACTTGTTGAA 59.087 41.667 0.00 0.00 35.39 2.69
1673 2075 4.469552 CGTCGTATGTAGTCACTTGTTGA 58.530 43.478 0.00 0.00 0.00 3.18
1674 2076 3.059044 GCGTCGTATGTAGTCACTTGTTG 59.941 47.826 0.00 0.00 0.00 3.33
1675 2077 3.240069 GCGTCGTATGTAGTCACTTGTT 58.760 45.455 0.00 0.00 0.00 2.83
1676 2078 2.227149 TGCGTCGTATGTAGTCACTTGT 59.773 45.455 0.00 0.00 0.00 3.16
1677 2079 2.858839 TGCGTCGTATGTAGTCACTTG 58.141 47.619 0.00 0.00 0.00 3.16
1678 2080 3.564235 TTGCGTCGTATGTAGTCACTT 57.436 42.857 0.00 0.00 0.00 3.16
1679 2081 3.564235 TTTGCGTCGTATGTAGTCACT 57.436 42.857 0.00 0.00 0.00 3.41
1680 2082 4.325204 TCATTTTGCGTCGTATGTAGTCAC 59.675 41.667 0.00 0.00 0.00 3.67
1681 2083 4.487019 TCATTTTGCGTCGTATGTAGTCA 58.513 39.130 0.00 0.00 0.00 3.41
1682 2084 4.561606 ACTCATTTTGCGTCGTATGTAGTC 59.438 41.667 0.00 0.00 0.00 2.59
1683 2085 4.326278 CACTCATTTTGCGTCGTATGTAGT 59.674 41.667 0.00 0.00 0.00 2.73
1684 2086 4.561213 TCACTCATTTTGCGTCGTATGTAG 59.439 41.667 0.00 0.00 0.00 2.74
1685 2087 4.487019 TCACTCATTTTGCGTCGTATGTA 58.513 39.130 0.00 0.00 0.00 2.29
1686 2088 3.322369 TCACTCATTTTGCGTCGTATGT 58.678 40.909 0.00 0.00 0.00 2.29
1687 2089 3.989705 TCACTCATTTTGCGTCGTATG 57.010 42.857 0.00 0.00 0.00 2.39
1688 2090 4.870426 AGATTCACTCATTTTGCGTCGTAT 59.130 37.500 0.00 0.00 0.00 3.06
1689 2091 4.242475 AGATTCACTCATTTTGCGTCGTA 58.758 39.130 0.00 0.00 0.00 3.43
1690 2092 3.067106 AGATTCACTCATTTTGCGTCGT 58.933 40.909 0.00 0.00 0.00 4.34
1691 2093 3.729526 AGATTCACTCATTTTGCGTCG 57.270 42.857 0.00 0.00 0.00 5.12
1692 2094 5.530519 TGTAGATTCACTCATTTTGCGTC 57.469 39.130 0.00 0.00 0.00 5.19
1693 2095 6.500684 AATGTAGATTCACTCATTTTGCGT 57.499 33.333 0.00 0.00 0.00 5.24
1694 2096 7.801547 AAAATGTAGATTCACTCATTTTGCG 57.198 32.000 17.26 0.00 40.40 4.85
1715 2117 9.221933 ACGGATGTGTGTAGACATATTTTAAAA 57.778 29.630 2.51 2.51 36.67 1.52
1716 2118 8.780846 ACGGATGTGTGTAGACATATTTTAAA 57.219 30.769 3.74 0.00 36.67 1.52
1718 2120 9.471084 CATACGGATGTGTGTAGACATATTTTA 57.529 33.333 0.00 0.00 36.67 1.52
1719 2121 7.985184 ACATACGGATGTGTGTAGACATATTTT 59.015 33.333 13.83 0.00 46.96 1.82
1720 2122 7.497595 ACATACGGATGTGTGTAGACATATTT 58.502 34.615 13.83 0.00 46.96 1.40
1721 2123 7.050970 ACATACGGATGTGTGTAGACATATT 57.949 36.000 13.83 0.00 46.96 1.28
1722 2124 6.650427 ACATACGGATGTGTGTAGACATAT 57.350 37.500 13.83 1.68 46.96 1.78
1731 2133 2.930040 GGACTCAACATACGGATGTGTG 59.070 50.000 15.55 14.30 45.93 3.82
1732 2134 2.565391 TGGACTCAACATACGGATGTGT 59.435 45.455 15.55 8.09 45.93 3.72
1733 2135 3.245518 TGGACTCAACATACGGATGTG 57.754 47.619 15.55 8.87 45.93 3.21
1735 2137 4.875536 TCAAATGGACTCAACATACGGATG 59.124 41.667 5.94 5.94 39.16 3.51
1736 2138 5.097742 TCAAATGGACTCAACATACGGAT 57.902 39.130 0.00 0.00 0.00 4.18
1737 2139 4.545208 TCAAATGGACTCAACATACGGA 57.455 40.909 0.00 0.00 0.00 4.69
1738 2140 5.621197 TTTCAAATGGACTCAACATACGG 57.379 39.130 0.00 0.00 0.00 4.02
1739 2141 5.512788 GCATTTCAAATGGACTCAACATACG 59.487 40.000 12.14 0.00 0.00 3.06
1740 2142 5.807011 GGCATTTCAAATGGACTCAACATAC 59.193 40.000 12.14 0.00 0.00 2.39
1741 2143 5.716228 AGGCATTTCAAATGGACTCAACATA 59.284 36.000 12.14 0.00 0.00 2.29
1742 2144 4.529377 AGGCATTTCAAATGGACTCAACAT 59.471 37.500 12.14 0.00 0.00 2.71
1743 2145 3.896888 AGGCATTTCAAATGGACTCAACA 59.103 39.130 12.14 0.00 0.00 3.33
1744 2146 4.525912 AGGCATTTCAAATGGACTCAAC 57.474 40.909 12.14 0.00 0.00 3.18
1745 2147 6.662865 TTTAGGCATTTCAAATGGACTCAA 57.337 33.333 12.14 0.00 0.00 3.02
1746 2148 6.662865 TTTTAGGCATTTCAAATGGACTCA 57.337 33.333 12.14 0.00 0.00 3.41
1747 2149 7.329471 GTCTTTTTAGGCATTTCAAATGGACTC 59.671 37.037 12.14 0.00 0.00 3.36
1748 2150 7.154656 GTCTTTTTAGGCATTTCAAATGGACT 58.845 34.615 12.14 3.08 0.00 3.85
1749 2151 6.928492 TGTCTTTTTAGGCATTTCAAATGGAC 59.072 34.615 12.14 8.23 0.00 4.02
1750 2152 7.060383 TGTCTTTTTAGGCATTTCAAATGGA 57.940 32.000 12.14 0.00 0.00 3.41
1751 2153 7.442062 ACTTGTCTTTTTAGGCATTTCAAATGG 59.558 33.333 12.14 0.00 0.00 3.16
1752 2154 8.369218 ACTTGTCTTTTTAGGCATTTCAAATG 57.631 30.769 5.68 5.68 0.00 2.32
1756 2158 9.474920 CAAATACTTGTCTTTTTAGGCATTTCA 57.525 29.630 0.00 0.00 0.00 2.69
1757 2159 8.925700 CCAAATACTTGTCTTTTTAGGCATTTC 58.074 33.333 0.00 0.00 0.00 2.17
1758 2160 7.877612 CCCAAATACTTGTCTTTTTAGGCATTT 59.122 33.333 0.00 0.00 0.00 2.32
1759 2161 7.234577 TCCCAAATACTTGTCTTTTTAGGCATT 59.765 33.333 0.00 0.00 0.00 3.56
1760 2162 6.723977 TCCCAAATACTTGTCTTTTTAGGCAT 59.276 34.615 0.00 0.00 0.00 4.40
1761 2163 6.071984 TCCCAAATACTTGTCTTTTTAGGCA 58.928 36.000 0.00 0.00 0.00 4.75
1762 2164 6.584185 TCCCAAATACTTGTCTTTTTAGGC 57.416 37.500 0.00 0.00 0.00 3.93
1763 2165 7.081976 CGTTCCCAAATACTTGTCTTTTTAGG 58.918 38.462 0.00 0.00 0.00 2.69
1764 2166 7.040961 TCCGTTCCCAAATACTTGTCTTTTTAG 60.041 37.037 0.00 0.00 0.00 1.85
1765 2167 6.771749 TCCGTTCCCAAATACTTGTCTTTTTA 59.228 34.615 0.00 0.00 0.00 1.52
1766 2168 5.595133 TCCGTTCCCAAATACTTGTCTTTTT 59.405 36.000 0.00 0.00 0.00 1.94
1767 2169 5.134661 TCCGTTCCCAAATACTTGTCTTTT 58.865 37.500 0.00 0.00 0.00 2.27
1768 2170 4.721132 TCCGTTCCCAAATACTTGTCTTT 58.279 39.130 0.00 0.00 0.00 2.52
1769 2171 4.324267 CTCCGTTCCCAAATACTTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1770 2172 3.307480 CCTCCGTTCCCAAATACTTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1771 2173 3.007635 CCTCCGTTCCCAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
1772 2174 2.290705 CCCTCCGTTCCCAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
1773 2175 2.026636 TCCCTCCGTTCCCAAATACTTG 60.027 50.000 0.00 0.00 0.00 3.16
1774 2176 2.238898 CTCCCTCCGTTCCCAAATACTT 59.761 50.000 0.00 0.00 0.00 2.24
1775 2177 1.838077 CTCCCTCCGTTCCCAAATACT 59.162 52.381 0.00 0.00 0.00 2.12
1776 2178 1.558294 ACTCCCTCCGTTCCCAAATAC 59.442 52.381 0.00 0.00 0.00 1.89
1777 2179 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1778 2180 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
1779 2181 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
1780 2182 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
1781 2183 3.816842 GCTATATACTCCCTCCGTTCCCA 60.817 52.174 0.00 0.00 0.00 4.37
1782 2184 2.759535 GCTATATACTCCCTCCGTTCCC 59.240 54.545 0.00 0.00 0.00 3.97
1783 2185 3.428532 TGCTATATACTCCCTCCGTTCC 58.571 50.000 0.00 0.00 0.00 3.62
1784 2186 4.280174 TGTTGCTATATACTCCCTCCGTTC 59.720 45.833 0.00 0.00 0.00 3.95
1785 2187 4.220724 TGTTGCTATATACTCCCTCCGTT 58.779 43.478 0.00 0.00 0.00 4.44
1786 2188 3.840991 TGTTGCTATATACTCCCTCCGT 58.159 45.455 0.00 0.00 0.00 4.69
1787 2189 6.525578 TTATGTTGCTATATACTCCCTCCG 57.474 41.667 0.00 0.00 0.00 4.63
1863 2685 3.375782 TCGCACTCCTCATCATATGTG 57.624 47.619 1.90 1.04 0.00 3.21
1869 2691 0.538584 AGCAATCGCACTCCTCATCA 59.461 50.000 0.00 0.00 42.27 3.07
1898 2720 3.566322 AGCGTAGACATCCACATCTAGAC 59.434 47.826 0.00 0.00 0.00 2.59
1904 2726 3.636764 TCATACAGCGTAGACATCCACAT 59.363 43.478 0.00 0.00 0.00 3.21
1916 2738 1.893137 TCTTGTCAGGTCATACAGCGT 59.107 47.619 0.00 0.00 0.00 5.07
1918 2740 4.331168 GTGATTCTTGTCAGGTCATACAGC 59.669 45.833 0.00 0.00 0.00 4.40
2167 3051 1.392589 CTTGTCCCCAGCGCATTTAT 58.607 50.000 11.47 0.00 0.00 1.40
2177 3061 4.421365 GCATCTTGCTTGTCCCCA 57.579 55.556 0.00 0.00 40.96 4.96
2252 3142 2.890311 CTCTGCCCCTACTCATCTGTAG 59.110 54.545 0.00 0.00 39.52 2.74
2270 3161 9.442047 GCCTATATACTGCAAATTAACATCTCT 57.558 33.333 0.00 0.00 0.00 3.10
2292 3183 9.338622 GCTTATTTTCTATCTAAAGGTTGCCTA 57.661 33.333 0.00 0.00 31.13 3.93
2293 3184 8.055790 AGCTTATTTTCTATCTAAAGGTTGCCT 58.944 33.333 0.00 0.00 33.87 4.75
2294 3185 8.226819 AGCTTATTTTCTATCTAAAGGTTGCC 57.773 34.615 0.00 0.00 0.00 4.52
2339 3230 3.451902 AGATTTGGGGTGTGCATATTTGG 59.548 43.478 0.00 0.00 0.00 3.28
2347 3238 1.327303 TCAACAGATTTGGGGTGTGC 58.673 50.000 0.00 0.00 0.00 4.57
2373 3264 2.694628 TGGATGCATGGAATTGGCTAAC 59.305 45.455 2.46 0.00 0.00 2.34
2380 3271 4.712829 TGAGTTCATTGGATGCATGGAATT 59.287 37.500 2.46 0.00 0.00 2.17
2382 3273 3.699413 TGAGTTCATTGGATGCATGGAA 58.301 40.909 2.46 0.00 0.00 3.53
2388 3279 3.285484 AGGACATGAGTTCATTGGATGC 58.715 45.455 0.00 0.00 33.61 3.91
2399 3290 3.367646 TCGACCTTCTAGGACATGAGT 57.632 47.619 0.00 0.00 37.67 3.41
2412 3303 3.306780 CCTGTCATAGTGGTTTCGACCTT 60.307 47.826 0.00 0.00 0.00 3.50
2417 3308 4.759782 AGAATCCTGTCATAGTGGTTTCG 58.240 43.478 0.00 0.00 35.73 3.46
2424 3315 4.466370 TCAAACCGAGAATCCTGTCATAGT 59.534 41.667 0.00 0.00 0.00 2.12
2434 3325 4.566987 ACCAAGTAGTCAAACCGAGAATC 58.433 43.478 0.00 0.00 0.00 2.52
2475 3366 0.110056 GGTGCTTCGCAGTTGATGTG 60.110 55.000 0.00 0.00 40.08 3.21
2486 3377 4.145756 GTGATTAAAACAAACGGTGCTTCG 59.854 41.667 0.00 0.00 0.00 3.79
2503 3394 7.418337 TGATTACCTCAGTTAGCTGTGATTA 57.582 36.000 9.88 0.00 43.05 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.