>input_sequence_74917
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-------------------------------------------------------------------ATGCCGCGACGAC
AACAACCTCCTCGGTC------------------------------------CCTCGCCCCTCGCCGGCGCCGGCGCGCT
CATCCTCTCCCACGCCGCGATTGCCGACCTAACCTCCTCCCGCCTCCTCCTC----------------------------
-CTTCCTCTGGACGACTGGAACTCACCC-----------------------------ATCCTAAG---CTCTGCGCGTAC
GTTTACATCCACATGCTCTGCTCCGCCGTGAGCCAGGACGACCGCACCTTCCCCTT--CGTCCTCCACGCCGCCGCTGAG
GCGCACGCAGCCAAGGGT--CAAGCAGTCAAGCTCCACGCCGCCGCGCTCAGAAGCGGCCACCTTACGGACGTGTTCGCG
GGC---AACACGCTGCGCCTCTTTCTATGCGGCCACCTCACGGACG------TGACGCGCGCGGGGTGTTTGATGAAATG
CCAGTCCCGGATGTTGTCCG---------------------TAGTCTCGGCGTTCTTGGCCAACAA-----GATGCTAGA
TGATGTGA-------GGCAGGCATTGGTTA-----GTA--------------------------TGACGGAGAGCGGGCA
GCGGGGTCCCTGTGAATGTGGCAAGCTTGGTCTC---------------------GGTTATGCCTGCCTTATAAG-----
-TAGCTGTGTACATACTACAGTGGCTACAAGCTTTTCTTGTAGGGGATCAGATGGTTAG---------------------
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>chr5A_1_TraesCS5A01G406400
CAACTCCAACATGTTGACCCAAATGCACGTGAGCTTTGTCTTTTTTGTCCGGTTGGATCGACTCGTCCGCCCCTTTTGCG
GAAGGACAAGCAACAACAGGATATTGAAGGACGTCACACTCTCCCTCCGGTGATTAGCCGTGTTCCATTTTTTAGTCTTC
TGTTGTCCGAGCTCTAAAGTCACCATCCGGTCCCGCAGAACTACTGCTCCTCCTCCCTTCTCAGCATGCTTCGGTATGGC
CCCATCCGAATTTGCTTTGACCCAACCCTCATCTGGTGGTGTCCATCGTTGTAGAAGCCATACTTATATGTATTTAATTC
TTATTATGGAAAATTCTTACATACTATTGATGGAAATACAGCAATGGACCGGGAGAAGTGGAAGGGTGAAATTCAAATTT
ATTTTTATTTTATTTGTGGGTAAAATTTCTGATCTATTCATCAACAGTCATGCTAGTATAAAGAACATCAGGGATAACAA
AAAATAAAAAT---------------------------------------------------------------------
------------------------------------AAAATCCACTAACATTTGCTAAAGATGTACATATCGACTACACA
CCTCACAAGTTTTTTATTATTATTAAGAATATATCAATGATAACACTGAGGAAGATTGAAGGCATAAAGAAAATGTGTGG
TTGACACGAAAATAATTGGCTAGGAAACCATTCCAATTAACATTTTGTTTGT----------------AAGTTTTTGATA
AATGTTTCCTTCATATTTTAAAACAATTTACCTAAAACAAG-TTAATATTTTAAAACTATTTTAATATATATTTGAAAAC
AATTGGCTAGGA--AACTCATACCAAATCTAGGGAC----GCAAGCAGAAGGGTTAGTTGCGTTGAAATAATG---ATGA
AAGACAAGTTACAAGGAGAAGAAGAAAAACATGTCTAAGTTGAA-------------------------ATGAGCATTTT
ACATCCACAAGACCAGCCTGAACTACTC---------------------------AAATGGTCAAAATAATCATCAACTG
CAGCAGCGCGCTGCCGCCAGCCACTTGACAGCCGCGTTCCTTCGTGCA----CGCGCACCTCCACCAATGCCGCGACGAC
AACAACCTCCTCGGTC------------------------------------CCTCGCCCCTCGCCGGCGCCGGCGCGCT
CATCCTCTCCCACGCCGCGATTGCCGACCTAACCTCCTCCCGCCTCCTCCTC----------------------------
-CTTCCTCTGGACGACTGGAACTCACCC-----------------------------ATCCTAAG---CTCTGCGCGTAC
GTTTACATCCACATGCTCTGCTCCGCCGTGAGCCAGGACGACCGCACCTTCCCCTT--CGTCCTCCACGCCGCCGCTGAG
GCGCACGCAGCCAAGGGT--CAAGCAGTCAAGCTCCACGCCGCCGCGCTCAGAAGCGGCCACCTTACGGACGTGTTCGCG
GGC---AACACGCTGCGCCTCTTTCTATGCGGCCACCTCACGGACG------TGACGCGCGCGGGGTGTTTGATGAAATG
CCAGTCCCGGATGTTGTCCG---------------------TAGTCTCGGCGTTCTTGGCCAACAA-----GATGCTAGA
TGATGTGA-------GGCAGGCATTGGTTA-----GTA--------------------------TGACGGAGAGCGGGCA
GCGGGGTCCCTGTGAATGTGGCAAGCTTGGTCTC---------------------GGTTATGCCTGCCTTATAAG-----
-TAGCTGTGTACATACTACAGTGGCTACAAGCTTTTCTTGTAGGGGATCAGATGGTTAGCTGATGGTGCACTTATATGGC
GGTATAA-------------GAATGGATTCTACTGTACTCCCTCCGTTCCTAAATACTTGTCTTTTTAGAGATTTCAACA
AGTGACTACATACGACGCAAAATGAGTGAATCTACATTTTAAAATATGTCTACACACATCCGTATGTTGAGTCCATTTGA
AATGCCTAAAAAGACAAGTATTTGGGAACGGAGGGAGTATATAGCAACATAATATTACAAGTTCA---------------
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-----CCCAACATGATAATTATTGTCACTGTAATAGCAAAGGAACACATATGATGAGGAGTGCGATTGCTTTTAGAAGAG
TCTAGATGTGGATGTCTACGCTGTATGACCTGACAAGAATCACATTAAGATGAGTAAATTTTTATTGGCGCCTACACATC
TTTGCTTATGGAGTCTGGCCTAGCAATGAAAGACAAGGTAAGCATTCCCAGACAACTT-------ATCTCTCTACATAAA
------------------------------------------------------TAACTTTGAGCAGTTCTGAAGTTCTG
TTCAACTGTCTGTGTCCATACAGCCATTG-CATACTCAATGTATTCTCTGCATAGTAAAGTACCTTTTGGTAGCTCCTCA
ACTTTGAATCATAAATGCGCTGGGGACAAGCAAG------ATGCTGATGTGCTAATAGAACAATTTTGTAATCTGTAAAA
ATATCATGTTCAGAGATGATACTACAGATGAG-TAGGGGCAGAGATGTTAATTTGCAGTATATAGGCAACCTTTAGATAG
AAAATAAGCTATGTATCAGTAAACTGTTTCCAAATATGCACACCCCAAATCTGTTGAATCCTTGTTAGCCAATTCCATGC
ATCCAATGAACTCATGTCCTAGAAGGTCGAAACCACTATGACAGGATTCTCGGTTTGACTACTTGGTACAGAAGTTGGCC
ATTGGCACATCAACTGCGAAGCACCGTTTGTTTTAATCACAGCTAACTGAGGTAATCAGCTTGTTTTATGTAAGTCAAAA
GATCAGTTAACAAGAGCACACACATATATGTATGTCATGGT
>chr5D_291
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--------------------------------------------------GTAGAAGCCATACTTATACGTATTTAATTC
TTATTATGGAAAATTCTCACATACTATTGATGGAAATACAGCAATGGGCCAGGAAAAGTGGAAAGGTGAAATTCAAATTA
TTTA-TATTTTATTTGCGGGTACAACTTCTAATCTATTCATCAATAGTCATGCTACTATAAAGAACATCAGAAATAACAA
AAAATAATATCCAGGTCCGTAGATCTTCAAATTATTATTGACCATAGTGTCCTTAGTCTTCTGATGTCACATAGCAAGGT
CCTTACTACCAACAACTGTGCGGAAAGATTTCTACCAAAATCCACTATCATTTGTTAAAGATGTACATATCAGTTACACA
CCTCACAATTTTTTTAAATTAAT----AATATATCAATGATAACACTGAGGAAGATTGAAGGCAG-AAAAAATTGTGTGG
TCGACACGAAAATAATTGGCTAGGAAACCATTCCAATTAAGTTTTTGTTTGTAAGTTTTTAGCAAAAAAAGTTTTTGATA
AATGTTTCCTTCATATTTTCTAAAAAAATTACCAAATTTTTTTTGACATTTTAAAACCATTCTAATATATAAATTATAAA
AACGAAAACGTAACAACTGATACCAAATCTAGCGACGCAAGCAAGCAGAATGGTTAGTTGCGTTGAAATAATAATAATGA
AAGACAAGTTAAAAGGAGAAGAAGAAAAACATGTCTAAGTTGAA-------------------------ATGAGCATTTT
ACATCCACAAGGCCAAGCC-------------------------------------------------------------
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>chr5B_492
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------------------------------------AAAACCCACTAACATTTGCTAAAGATGTACATATCGGCCGCGC-
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-------------------------------------------------------------CCGCCAGTGCGGCGACGAC
GGCAACCTCCTCGGCCGCGCCCATGCCG---------------GCGCGCTCGCCGCCTCCTTTTCCCTTGCCGGCGCGCT
CATCCTCTCCTACGCCGCGATTGCCGACCTAACCTCCTCCCGCCTCCTCCTCCTTCACCGCCCCC-----------TCCG
TCTTCCTCTGGAAGACTGGAACTCACCCTCCCGCGCATTCTCCGCGGCCTCCCTCCCATCCTAAG---CTCCGCG----C
GCTTACAACCCCATGCTCCGCTCTGCCGTGAGCCAGGACGATCCCACCTTCCCCACGCCGTCCTCCACGCCGCCGCTGAG
CCGCACGCAGCCAAGGGTCTCAAGCAGTCAAGCTCCATGCGGCCGGGCTCTGAAGCGGCCACCTCACGGACGTGGTCGCG
GGC---AACACGCTGCGTCTCTATCTATGCGGCCACCTCACGGACG------TGACGCGCGCGGGGTGTTTGATGAAATG
CCCGTTCCGGAT-------GCTGTCTCGTGGAACTCCCTGCTAGTCTCGGCGTTCTTGGCCAACACAACAGGATGCTAGA
TGATGCTTGGCACTTGGCAGGCATTGCTTAGTACTCCCTGTGAATGTGGCAAGCTTGGTCTCTGTGATCGAGAGCGGGCA
GCGGGGTTCCTCTGAATGTGGCAAGCTTGGTCTCTGTATGGAGAGCGGGCAGCGGGGTTATGCCTGCTTCTGCCAGCCTT
ATAGCTGTGTACAG-----AGTGGCTACAAGCTTTTCTTGTCGGGGATCGGATGGTTAGCTGATGGTGCACTTATATGAT
GGTATGTAATCTTCCACTAGGAATGGATTCTACTCC--------------------------------------------
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--------------------------------------ATATAGCAACATAATATTACAAGTTCA---------------
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-----CCCAACATGATAATTATTACCACTCTAATAGCAAAGGAATAC----GATGAGGAGTGCAATTGCTTTTAGAAGAC
TGTAGGAGTGGATGTTTGCA---------CTGGCAAGAATCACATTAAGATGAGTAAATTTTTATTGTCGCCTACACATC
TTCGCTTATGGAGTCTGGCCTAGCAATGAAAGACAAGGTAAGCATTCTCAGACAACCT-------ATCTCTCTACATAAA
------------------------------------------------------TAACTTTGAGCAGTTCTGAAGTTCTG
TTCAACTGTCTCTGTCCATACAGTCATTG-CATAGTCGATGTATTCCCTGCATAGTAAAGTACATTTTGCTAGCTCCTCA
ACTTTGAATAGAAA-TGCGCCGGGGATAAGCAAGAAGATAATGCTGATGTGCTAACAGAACAATTTTGTAATCTGTAAAT
ATATCATGTTCAGAGATGATAGTACACATGAGGTAGAGGCTGAGATGTTAATTTTTATATGGGG---AACCTTTAGATAG
AAAATAAGCTATGTATCAGTAAACTGTTT-CAAATATCCACACCCCAAATCTGTTGAATCCTTATTAGCCGGCTCGATTC
ATCCAATGAGCTCATGTCCTAGTAGGTTGAAACCTCTATGACAGAATTCTCGGTTTGACTACTTGGTACAGAAGTTGGCA
ATTGGTACATCAACTGTGAACCACCGTTTGTTTAAATCACAGCTAACTGAGGTAGTCAGCTTGTTTTATGTAAGTCAAAG
GATCAGTTAACAAGAGCACACACATATGTATGTC-------
>chr5B_658
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------------------------------------------TTTTGTTTGT----------------AAGCTTTTGATA
AATGTTTCCTTCATATTTTT--------------AAACAAG-TTAATATTTTAAAACTATTTTAATATATAAATTAGAAA
AACC-AAACGCAACAACTCATACCAAATCAAGCGACGA----AAGCAGAAGGGTTAGTTGCGTTGAAATAATG---AAAG
G---CAAGTTAAAAGGAGAAGAAGGAAAACATGTCTAAGTTGAAATGAGCATTTTTTAAGCTTAAAAGAATGAGCATTTT
ACATCCACGAGACGAGGCCAAGCCCACAACCGGATGCCACGCCAGCCTGAACTCAAAATGGTCAAAAATAC--TCAACTG
CAGCAGCGCGCTCCCGCCAGCCACTCTACAGCCGCGTTCCT----GCA----CGCGCACCTCCACCAATGCGGCGACGAC
GGCAACCTCCTCGGCCGCGCCAATGCCGCCGCGCTTATATCCGGCGCGCTCGCCGCCTCCTTGCCCCTCGCCGGCGCGCT
CATCATCTCCTACGCTGCGATTGCCGACCTACCCTCCT-CCGCCTCCGCCTCCTTCACCGCCCCC-----------TCGG
A--------GGAAGACTGGAACTCACCCTCCCGCGCAATCTCTGCGGCTTCCCTCCCATCCTAAG---CTCTGCG----C
GCTTACAACCCGATGCTCCGCTCCGCCGTGAGCCGGGA-------ACCTTCCCCTT--TGTCCTCCACGCCGCCGCTGAG
GCGCACTCAGCCAAGGGC--CAAGCAGTCAAGCTCCACGCCGCCGCGCTCTGAAC-------------------------
-----------------------------CGGCCACCTCACGGACG------TGACGCGCGTGGGGTGTTTGATGAAATG
CCCGTTCCGGAT-------G---------------------TAGTCTCGGCGTTCTTGGCCAACGCAACAGGATGCTAGA
TGATGCGA-------GGCAGGCATTGGTTAGTACTGTA--------------------------TGATGGAGAGCGGGCA
GCGGGGTCCCTGTGAATGTGGAAAGCTTGGTCTC---------------------GGTTATGCCTGCTTCTGCCAGCCTT
ATAGCTGGATACAG-----AGTGGCTACGAGCTTTTCTTGTCAG-----GGATGGTTAGCTGATGGTGCACTTATATGGT
GGTACGTAATCTTCCACTAGGAATGCATTCTATT----------------------------------------------
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-----------------------------------------TAGCAACATAATATTACAAGTTCA---------------
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-----CCCAGCATGATAAATATTGTCATTGTAATAGCGAAGGAATACATACGAT---GAGTGTGATTGCTTTTAGAAGA-
-CTAGTTGTGGATGTCTGCACTGTATGACCTGACAAGAATCACATTAAGATGAGTAAATATTTATTGGCGCCTACACACC
TTTGCTTATGGAGTCTAGCCTTGCAATGAAAGAGAAGGTAAGCATTCTCAAACAATTTTTTTTTAATCTCTTGACATAAA
------------------------------------------------------TAACTTTGAGCAGTTCTGAAGTTCTG
TTCAACTCTCTGTGTCCATACAGCCATTGGCATGCTCAATTCATTCTCTGCATAGTAAAGTTCCTTTTGCTAGCTCCTCA
ACTTTGAATCGTGAATGCACCAGGGATAAGCAAGAATATAATCCTGGTGTGCTAATAGAACAATTTTGTAATCTGTAAAA
ATATCATGCTCAGAGATGATAGTACAGATGA-GTAGGGGCTGAGATGTTAATTTGTATATGGGG---AACCTTTAGATAG
AAAATAAGCTATGTATCAGTAAACTGTTTTCAAATATCCACATCCCAAATCTGCTGAGTCGTTATTAGCCGACTCCATTT
ATCCAATGAGCTCATGTCCTAGTAGGTTGAAAGCTCTATGACAGAATTCTCGGTTTGACTACTTGGTACAGAAGTTGGCC
ACTGGTACATCGATTGTGAAGCACCGTTTGCTTAAGTCACAGCTAACTGATGTAATCAGCTTGTTTTATGTAAGTCAAAA
GATCAGTTAACAAGGGCACACACATATGTATGTC-------
>chr5D_916
TGGTC---------------------------------------------------------------------------
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----------------------------------------------------------------AAAATAC--TCAACTG
CAGCAGCGCGCTCCCGCCAGCCACTTGACAGCCGCGTTCCT----GCACGCGCGCGCACCTCCACCAATGCGGCGACGAC
GGCAACCTCCTCGGCCGCGCCTATGCCG------------------------CCGCGTCCTTGCCCCTCGCCGGCGCGCT
CATCCTCTCCTACGCCGCGATTGCCGACCTACCCTCCT-CCGCCTCCTCCTCCTTCACCGCCCCCACCGCCTTCGCTCCG
TCTTCCTCTGGAAGACTGGAAGTCACCCTCCCACGCACTCTCCACGGCTTCCCTCCCATCCTAAGAAGCTCCGAG----C
GTTTACAACCCTATGCTCCGCTCCGCCGTGAGCCAGGACGACCGCACCTTCCCCTT--CGTCCTCCACGCCGCCGC----
----------------------------------------------GCTCTGAGGCGGCCACCTCACGGACGTGTTCGCG
GGTAGTAACACGCTGCGTCTCTTTCTATGCGGCCACCTCACGGACGTGACGGTGACGCACGCGGGGTGTTTGATGAAATG
CCC--------------------------------------TACTCTCGGCATTCTTGGC-----CAACAGGATGCTAGA
TGATGCGA-------GGCAGGCATTGGTTAGC-----A--------------------------TGATGGAGAGCGGGCA
GC---------------------------------------------------------------------------CTT
ATAGCTGTGTACAG-----AGTGGCTACAAGCTTTTCTTGTCGGTCATCGGATGGTTAGCTGATGGTGCACTTATATGGT
GGTATGTAATCTTCCACTAGGAATGGATGCTACTCC--------------------------------------------
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--------------------------------------ATATAGCAACATAATATTACAAGTTTATCCAACATGACGAAA
GTGCCTTTCTGCTCCCGAGCTCATTTGAGCTTGGTGAACAGTAAAATCGAAAAAAAATCGAAAAAAATTCAAAAAATTCC
AAATTTTTTTTGAGAGAAACATTGACAAAAGTTCTAAGTGCCTGCAAAAATTCATCATGAAATCACATTCCTGTAAGGCG
TGGCAAAAAAAAAACAAATTCAGTGCTTCAAAATGCTTTTGAAAGTAGCTTTTTCAGAGTACTGTTTTTGTTTTTTTTGC
CATGCCTTCTAGAAATGTGATTTCATGACGAATTTTTGCAAGCACTTAGAACTTTTGTCAATATTTCTCCAAAAAAAATT
GGATTTTTTTGAATTTCTTTTGATTTAGTTTTGATTTTACTGTTCACCCGAGCTCATTTGAGCTCGGGTGCAGAAACTCC
GCGTCCCCAACATGATAACTATTGTCACTGCAATAGCAAAGGAATAC----GATGAGGAGTGCAATTGCTT---------
-------GTGGACGTCTGCACTGTATGACCTGACAAGAAACGCATTAAGATGAGCAAATTTTTATGGGCGCCTACACATC
TTTGCTGATGGAGTCTGGCCTTGCAATGAAAGACAAGGTAAGCATTCTCAGACAACTT-------ATCTCTCTACATAAA
TACGTAGTTTTAGATACATTCATTTCTGCGACAAGTAATTCCGAACGGAGGGAGTAACTTTGAGCAGTTCTCAAGTTCTG
TTCAACTGTCTGTGTCCATACAGTCATTG-CATACTCAATGTATTCTCTGCATAGAAAAGTTCCTTTTGGTAGCTCCTCA
ACTTTGAATAGTAAATGTGACAGGGATAAACAAGAAGATAATCCTGATTTACTAATAGAACAATTTTGTAATCTGTAAAA
ATATCATGTCCAGAGATGATAGTACAGATGAGGTAGAGGCTGAGATGTTAATTTCTATATGGGG---AACCTTTAGATAG
AAGATAAGCTATGTATCAGTAAACTGTTTTCAAATACCCACACCCCAAATCTGTTGAATCCTTATTAGCTGACTCCATTC
ATCCAATGAGCTCATGTCCTAGTAGGTTGAAACCTCTATGACAGAATTCTCGGTTTGACTACTTGGTACAGAAGCTGGCA
ATTGGTACATCAACT-----------------------------------------------------------------
-----------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-----------
-----------------S-----------------------------S--S---S--------S---------------S
S--SS-----------S-----S--S----S-------------S----------S---------------SS-------
-------S-SS---------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------S-------SSS-S--SSSS-------------------------------------SS--S---S-------
-S--------------------------------------SS--------------------------------------
-------------------SS--S--SS-SS-S--------------------------------------SS-S-S--S
--SSSSSSS-S---------------------S-----------------------------------------------
-----------S--------------------------------------------------------------------
----------------S-SS-S-SSSSS---------------------------------------SS-SSS-------
------------S----------------------------SSSS--------------------------S--------
SS------------S---------------------------------------S--S--S-SS--SS------------
----------S---------------------------------------------------------------------
------------S--------------------------------------------------------------SSSS-
-------S--S-------S-------------------------------------------------------------
--------------------------------------------------S-------------S---------------
-----------------S--------------------------------------------------------------
--S--S------SSSSSSS----------------------------------------------S--------------
-----S-------------------------------------------------------------S------------
-------------------------------------------------------------------S-SSSSSS-----
-------------SSSSSS----------------------S-------S-----------------------------S
-----SS---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------
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--------------------------------------------S-----S----------------------------S
-----S-----------S-S------------------------------------------------------------
-----------------------------------------------S--------------------------------
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----------S---------S-----S-----------------------------------------------------
---------------------S------------------S--------------S-SSSSSSSSSS-------------
-----------------------------S-------S-------------------------S------S-S-----S-
---------S------------S----S------S---------S-----------------------------------
-----S----------S----------------S----------------------------------------------
---------------------------S-S-S-SSSSSSSS
>forward_278
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------------------GACCCAACCCTCATCTGGTG------------------------------------------
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>reverse_1373
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------------CGACTGGAACTCACCCATCC------------------------------------------------
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>forward_1060
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ACATCCACAAGACCAGCCTG------------------------------------------------------------
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>reverse_3366
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-----CACATCAACTGCGAAGCACC-------------------------------------------------------
-----------------------------------------
