Multiple sequence alignment - TraesCS5A01G402400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G402400 chr5A 100.000 2177 0 0 1 2177 595036573 595038749 0.000000e+00 4021
1 TraesCS5A01G402400 chr5D 89.583 864 54 20 807 1665 475575292 475576124 0.000000e+00 1064
2 TraesCS5A01G402400 chr5D 89.398 349 19 6 16 361 475574781 475575114 7.180000e-115 424
3 TraesCS5A01G402400 chr5D 86.000 400 31 9 1801 2177 475576251 475576648 2.600000e-109 405
4 TraesCS5A01G402400 chr5B 91.379 696 31 9 709 1376 582974865 582975559 0.000000e+00 926
5 TraesCS5A01G402400 chr5B 92.162 370 17 7 1 361 582974402 582974768 1.490000e-141 512
6 TraesCS5A01G402400 chr5B 89.377 273 15 7 1401 1665 582975618 582975884 4.480000e-87 331
7 TraesCS5A01G402400 chr5B 98.198 111 1 1 2067 2177 582976194 582976303 2.210000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G402400 chr5A 595036573 595038749 2176 False 4021.0 4021 100.000 1 2177 1 chr5A.!!$F1 2176
1 TraesCS5A01G402400 chr5D 475574781 475576648 1867 False 631.0 1064 88.327 16 2177 3 chr5D.!!$F1 2161
2 TraesCS5A01G402400 chr5B 582974402 582976303 1901 False 490.5 926 92.779 1 2177 4 chr5B.!!$F1 2176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 944 0.17691 TCGACACCACAAGAAGCACA 59.823 50.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2139 0.109723 TGTCAAGGTTAAAGCCGGCT 59.89 50.0 27.08 27.08 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 0.259065 AGAGACCGAGGGCACAGATA 59.741 55.000 0.00 0.00 0.00 1.98
123 125 0.663153 GTGTGCTTGAATATCGGGCC 59.337 55.000 0.00 0.00 0.00 5.80
164 166 3.094572 ACTAAGTTAAGTAGGGCGCTCA 58.905 45.455 11.40 0.00 0.00 4.26
192 194 4.608170 AGGCTATGGAATCCCTTTTGAA 57.392 40.909 0.00 0.00 0.00 2.69
229 232 7.886970 ACTGAAGGAACATAGTACTGTACAGTA 59.113 37.037 27.99 27.99 42.54 2.74
280 283 3.268023 GGCTGTAGGCTCAAGTATGTT 57.732 47.619 0.00 0.00 41.46 2.71
283 286 3.868077 GCTGTAGGCTCAAGTATGTTCTG 59.132 47.826 0.00 0.00 38.06 3.02
361 371 5.190330 TCATCAGAATTGGATCCAGAGACAA 59.810 40.000 15.53 0.00 0.00 3.18
362 372 5.705397 TCAGAATTGGATCCAGAGACAAT 57.295 39.130 15.53 1.05 35.24 2.71
363 373 5.678583 TCAGAATTGGATCCAGAGACAATC 58.321 41.667 15.53 2.34 32.80 2.67
364 374 5.427806 TCAGAATTGGATCCAGAGACAATCT 59.572 40.000 15.53 4.83 39.56 2.40
379 389 4.979388 GACAATCTGATTGGCTGTCTTTC 58.021 43.478 28.41 14.07 44.95 2.62
380 390 4.401022 ACAATCTGATTGGCTGTCTTTCA 58.599 39.130 28.41 0.00 44.42 2.69
381 391 4.828939 ACAATCTGATTGGCTGTCTTTCAA 59.171 37.500 28.41 0.00 44.42 2.69
382 392 5.302568 ACAATCTGATTGGCTGTCTTTCAAA 59.697 36.000 28.41 0.00 44.42 2.69
383 393 6.014840 ACAATCTGATTGGCTGTCTTTCAAAT 60.015 34.615 28.41 5.22 44.42 2.32
384 394 6.600882 ATCTGATTGGCTGTCTTTCAAATT 57.399 33.333 0.00 0.00 0.00 1.82
385 395 6.017400 TCTGATTGGCTGTCTTTCAAATTC 57.983 37.500 0.00 0.00 0.00 2.17
386 396 4.797471 TGATTGGCTGTCTTTCAAATTCG 58.203 39.130 0.00 0.00 0.00 3.34
387 397 4.518590 TGATTGGCTGTCTTTCAAATTCGA 59.481 37.500 0.00 0.00 0.00 3.71
388 398 4.909696 TTGGCTGTCTTTCAAATTCGAA 57.090 36.364 0.00 0.00 0.00 3.71
389 399 4.909696 TGGCTGTCTTTCAAATTCGAAA 57.090 36.364 0.00 0.00 33.89 3.46
390 400 4.606961 TGGCTGTCTTTCAAATTCGAAAC 58.393 39.130 0.00 0.00 31.71 2.78
391 401 3.981416 GGCTGTCTTTCAAATTCGAAACC 59.019 43.478 0.00 0.00 31.71 3.27
392 402 4.499019 GGCTGTCTTTCAAATTCGAAACCA 60.499 41.667 0.00 0.00 31.71 3.67
393 403 4.441087 GCTGTCTTTCAAATTCGAAACCAC 59.559 41.667 0.00 0.00 31.71 4.16
394 404 5.733373 GCTGTCTTTCAAATTCGAAACCACT 60.733 40.000 0.00 0.00 31.71 4.00
395 405 6.202516 TGTCTTTCAAATTCGAAACCACTT 57.797 33.333 0.00 0.00 31.71 3.16
396 406 6.033341 TGTCTTTCAAATTCGAAACCACTTG 58.967 36.000 0.00 1.75 31.71 3.16
397 407 5.040635 TCTTTCAAATTCGAAACCACTTGC 58.959 37.500 0.00 0.00 31.71 4.01
398 408 4.647424 TTCAAATTCGAAACCACTTGCT 57.353 36.364 0.00 0.00 0.00 3.91
399 409 3.963665 TCAAATTCGAAACCACTTGCTG 58.036 40.909 0.00 0.00 0.00 4.41
400 410 2.422276 AATTCGAAACCACTTGCTGC 57.578 45.000 0.00 0.00 0.00 5.25
401 411 1.609208 ATTCGAAACCACTTGCTGCT 58.391 45.000 0.00 0.00 0.00 4.24
402 412 1.388547 TTCGAAACCACTTGCTGCTT 58.611 45.000 0.00 0.00 0.00 3.91
403 413 0.944386 TCGAAACCACTTGCTGCTTC 59.056 50.000 0.00 0.00 0.00 3.86
404 414 0.947244 CGAAACCACTTGCTGCTTCT 59.053 50.000 0.00 0.00 0.00 2.85
405 415 1.334419 CGAAACCACTTGCTGCTTCTG 60.334 52.381 0.00 0.00 0.00 3.02
406 416 1.678101 GAAACCACTTGCTGCTTCTGT 59.322 47.619 0.00 0.00 0.00 3.41
407 417 1.767759 AACCACTTGCTGCTTCTGTT 58.232 45.000 0.00 0.00 0.00 3.16
408 418 1.767759 ACCACTTGCTGCTTCTGTTT 58.232 45.000 0.00 0.00 0.00 2.83
409 419 2.930950 ACCACTTGCTGCTTCTGTTTA 58.069 42.857 0.00 0.00 0.00 2.01
410 420 2.880890 ACCACTTGCTGCTTCTGTTTAG 59.119 45.455 0.00 0.00 0.00 1.85
411 421 3.141398 CCACTTGCTGCTTCTGTTTAGA 58.859 45.455 0.00 0.00 0.00 2.10
412 422 3.755378 CCACTTGCTGCTTCTGTTTAGAT 59.245 43.478 0.00 0.00 31.81 1.98
413 423 4.379186 CCACTTGCTGCTTCTGTTTAGATG 60.379 45.833 0.00 0.00 31.81 2.90
414 424 4.214971 CACTTGCTGCTTCTGTTTAGATGT 59.785 41.667 0.00 0.00 31.81 3.06
415 425 4.214971 ACTTGCTGCTTCTGTTTAGATGTG 59.785 41.667 0.00 0.00 31.81 3.21
416 426 4.006780 TGCTGCTTCTGTTTAGATGTGA 57.993 40.909 0.00 0.00 31.81 3.58
417 427 4.388485 TGCTGCTTCTGTTTAGATGTGAA 58.612 39.130 0.00 0.00 31.81 3.18
418 428 5.005740 TGCTGCTTCTGTTTAGATGTGAAT 58.994 37.500 0.00 0.00 31.81 2.57
419 429 5.106436 TGCTGCTTCTGTTTAGATGTGAATG 60.106 40.000 0.00 0.00 31.81 2.67
420 430 5.675575 GCTGCTTCTGTTTAGATGTGAATGG 60.676 44.000 0.00 0.00 31.81 3.16
421 431 5.559770 TGCTTCTGTTTAGATGTGAATGGA 58.440 37.500 0.00 0.00 31.81 3.41
422 432 6.182627 TGCTTCTGTTTAGATGTGAATGGAT 58.817 36.000 0.00 0.00 31.81 3.41
423 433 6.660521 TGCTTCTGTTTAGATGTGAATGGATT 59.339 34.615 0.00 0.00 31.81 3.01
424 434 7.177216 TGCTTCTGTTTAGATGTGAATGGATTT 59.823 33.333 0.00 0.00 31.81 2.17
425 435 8.677300 GCTTCTGTTTAGATGTGAATGGATTTA 58.323 33.333 0.00 0.00 31.81 1.40
426 436 9.994432 CTTCTGTTTAGATGTGAATGGATTTAC 57.006 33.333 0.00 0.00 31.81 2.01
427 437 9.513906 TTCTGTTTAGATGTGAATGGATTTACA 57.486 29.630 0.02 0.02 39.97 2.41
428 438 9.166173 TCTGTTTAGATGTGAATGGATTTACAG 57.834 33.333 3.70 0.00 39.22 2.74
429 439 8.279970 TGTTTAGATGTGAATGGATTTACAGG 57.720 34.615 3.70 0.00 39.22 4.00
430 440 7.888021 TGTTTAGATGTGAATGGATTTACAGGT 59.112 33.333 3.70 0.00 39.22 4.00
431 441 8.398665 GTTTAGATGTGAATGGATTTACAGGTC 58.601 37.037 3.70 0.00 39.22 3.85
432 442 6.065976 AGATGTGAATGGATTTACAGGTCA 57.934 37.500 3.70 0.00 39.22 4.02
433 443 6.484288 AGATGTGAATGGATTTACAGGTCAA 58.516 36.000 3.70 0.00 39.22 3.18
434 444 6.947733 AGATGTGAATGGATTTACAGGTCAAA 59.052 34.615 3.70 0.00 39.22 2.69
435 445 6.573664 TGTGAATGGATTTACAGGTCAAAG 57.426 37.500 0.00 0.00 32.30 2.77
436 446 5.048083 TGTGAATGGATTTACAGGTCAAAGC 60.048 40.000 0.00 0.00 32.30 3.51
437 447 4.155826 TGAATGGATTTACAGGTCAAAGCG 59.844 41.667 0.00 0.00 0.00 4.68
438 448 3.410631 TGGATTTACAGGTCAAAGCGA 57.589 42.857 0.00 0.00 0.00 4.93
439 449 3.334691 TGGATTTACAGGTCAAAGCGAG 58.665 45.455 0.00 0.00 0.00 5.03
440 450 2.096013 GGATTTACAGGTCAAAGCGAGC 59.904 50.000 0.00 0.00 42.76 5.03
441 451 2.248280 TTTACAGGTCAAAGCGAGCA 57.752 45.000 0.00 0.00 44.97 4.26
442 452 1.508632 TTACAGGTCAAAGCGAGCAC 58.491 50.000 0.00 0.00 44.97 4.40
443 453 0.391228 TACAGGTCAAAGCGAGCACA 59.609 50.000 0.00 0.00 44.97 4.57
444 454 0.463654 ACAGGTCAAAGCGAGCACAA 60.464 50.000 0.00 0.00 44.97 3.33
445 455 0.662619 CAGGTCAAAGCGAGCACAAA 59.337 50.000 0.00 0.00 44.97 2.83
446 456 0.663153 AGGTCAAAGCGAGCACAAAC 59.337 50.000 0.00 0.00 44.97 2.93
447 457 0.317854 GGTCAAAGCGAGCACAAACC 60.318 55.000 0.00 0.00 41.98 3.27
448 458 0.380378 GTCAAAGCGAGCACAAACCA 59.620 50.000 0.00 0.00 0.00 3.67
449 459 1.098869 TCAAAGCGAGCACAAACCAA 58.901 45.000 0.00 0.00 0.00 3.67
450 460 1.474478 TCAAAGCGAGCACAAACCAAA 59.526 42.857 0.00 0.00 0.00 3.28
451 461 1.587946 CAAAGCGAGCACAAACCAAAC 59.412 47.619 0.00 0.00 0.00 2.93
452 462 0.814457 AAGCGAGCACAAACCAAACA 59.186 45.000 0.00 0.00 0.00 2.83
453 463 0.814457 AGCGAGCACAAACCAAACAA 59.186 45.000 0.00 0.00 0.00 2.83
454 464 0.920664 GCGAGCACAAACCAAACAAC 59.079 50.000 0.00 0.00 0.00 3.32
455 465 1.555477 CGAGCACAAACCAAACAACC 58.445 50.000 0.00 0.00 0.00 3.77
456 466 1.135257 CGAGCACAAACCAAACAACCA 60.135 47.619 0.00 0.00 0.00 3.67
457 467 2.481104 CGAGCACAAACCAAACAACCAT 60.481 45.455 0.00 0.00 0.00 3.55
458 468 2.865551 GAGCACAAACCAAACAACCATG 59.134 45.455 0.00 0.00 0.00 3.66
459 469 2.235898 AGCACAAACCAAACAACCATGT 59.764 40.909 0.00 0.00 43.14 3.21
460 470 2.607180 GCACAAACCAAACAACCATGTC 59.393 45.455 0.00 0.00 39.40 3.06
461 471 2.857152 CACAAACCAAACAACCATGTCG 59.143 45.455 0.00 0.00 39.40 4.35
462 472 1.857837 CAAACCAAACAACCATGTCGC 59.142 47.619 0.00 0.00 39.40 5.19
463 473 1.398692 AACCAAACAACCATGTCGCT 58.601 45.000 0.00 0.00 39.40 4.93
464 474 1.398692 ACCAAACAACCATGTCGCTT 58.601 45.000 0.00 0.00 39.40 4.68
465 475 1.336755 ACCAAACAACCATGTCGCTTC 59.663 47.619 0.00 0.00 39.40 3.86
466 476 1.335872 CCAAACAACCATGTCGCTTCC 60.336 52.381 0.00 0.00 39.40 3.46
467 477 1.608590 CAAACAACCATGTCGCTTCCT 59.391 47.619 0.00 0.00 39.40 3.36
468 478 1.981256 AACAACCATGTCGCTTCCTT 58.019 45.000 0.00 0.00 39.40 3.36
469 479 1.523758 ACAACCATGTCGCTTCCTTC 58.476 50.000 0.00 0.00 33.41 3.46
470 480 1.202758 ACAACCATGTCGCTTCCTTCA 60.203 47.619 0.00 0.00 33.41 3.02
471 481 1.879380 CAACCATGTCGCTTCCTTCAA 59.121 47.619 0.00 0.00 0.00 2.69
472 482 1.813513 ACCATGTCGCTTCCTTCAAG 58.186 50.000 0.00 0.00 34.85 3.02
473 483 1.072331 ACCATGTCGCTTCCTTCAAGT 59.928 47.619 0.00 0.00 34.13 3.16
474 484 2.154462 CCATGTCGCTTCCTTCAAGTT 58.846 47.619 0.00 0.00 34.13 2.66
475 485 2.554032 CCATGTCGCTTCCTTCAAGTTT 59.446 45.455 0.00 0.00 34.13 2.66
476 486 3.004734 CCATGTCGCTTCCTTCAAGTTTT 59.995 43.478 0.00 0.00 34.13 2.43
477 487 4.215399 CCATGTCGCTTCCTTCAAGTTTTA 59.785 41.667 0.00 0.00 34.13 1.52
478 488 4.806342 TGTCGCTTCCTTCAAGTTTTAC 57.194 40.909 0.00 0.00 34.13 2.01
479 489 3.562557 TGTCGCTTCCTTCAAGTTTTACC 59.437 43.478 0.00 0.00 34.13 2.85
480 490 3.562557 GTCGCTTCCTTCAAGTTTTACCA 59.437 43.478 0.00 0.00 34.13 3.25
481 491 3.813166 TCGCTTCCTTCAAGTTTTACCAG 59.187 43.478 0.00 0.00 34.13 4.00
482 492 3.609409 CGCTTCCTTCAAGTTTTACCAGC 60.609 47.826 0.00 0.00 34.13 4.85
483 493 3.317993 GCTTCCTTCAAGTTTTACCAGCA 59.682 43.478 0.00 0.00 34.13 4.41
484 494 4.557496 GCTTCCTTCAAGTTTTACCAGCAG 60.557 45.833 0.00 0.00 34.13 4.24
485 495 3.486383 TCCTTCAAGTTTTACCAGCAGG 58.514 45.455 0.00 0.00 42.21 4.85
486 496 2.029918 CCTTCAAGTTTTACCAGCAGGC 60.030 50.000 0.00 0.00 39.06 4.85
487 497 2.656947 TCAAGTTTTACCAGCAGGCT 57.343 45.000 0.00 0.00 39.06 4.58
488 498 2.229792 TCAAGTTTTACCAGCAGGCTG 58.770 47.619 10.94 10.94 43.26 4.85
489 499 0.961753 AAGTTTTACCAGCAGGCTGC 59.038 50.000 31.56 31.56 45.46 5.25
498 508 2.341176 GCAGGCTGCAGGTTTTGG 59.659 61.111 33.33 0.00 44.26 3.28
499 509 3.053828 CAGGCTGCAGGTTTTGGG 58.946 61.111 17.12 0.00 0.00 4.12
500 510 1.531365 CAGGCTGCAGGTTTTGGGA 60.531 57.895 17.12 0.00 0.00 4.37
501 511 0.901580 CAGGCTGCAGGTTTTGGGAT 60.902 55.000 17.12 0.00 0.00 3.85
502 512 0.901580 AGGCTGCAGGTTTTGGGATG 60.902 55.000 17.12 0.00 0.00 3.51
503 513 1.593265 GCTGCAGGTTTTGGGATGG 59.407 57.895 17.12 0.00 0.00 3.51
504 514 0.899717 GCTGCAGGTTTTGGGATGGA 60.900 55.000 17.12 0.00 0.00 3.41
505 515 1.856629 CTGCAGGTTTTGGGATGGAT 58.143 50.000 5.57 0.00 0.00 3.41
506 516 1.479323 CTGCAGGTTTTGGGATGGATG 59.521 52.381 5.57 0.00 0.00 3.51
507 517 0.826062 GCAGGTTTTGGGATGGATGG 59.174 55.000 0.00 0.00 0.00 3.51
508 518 1.619432 GCAGGTTTTGGGATGGATGGA 60.619 52.381 0.00 0.00 0.00 3.41
509 519 2.956385 GCAGGTTTTGGGATGGATGGAT 60.956 50.000 0.00 0.00 0.00 3.41
510 520 3.377573 CAGGTTTTGGGATGGATGGATT 58.622 45.455 0.00 0.00 0.00 3.01
511 521 3.133362 CAGGTTTTGGGATGGATGGATTG 59.867 47.826 0.00 0.00 0.00 2.67
512 522 2.435437 GGTTTTGGGATGGATGGATTGG 59.565 50.000 0.00 0.00 0.00 3.16
513 523 1.792115 TTTGGGATGGATGGATTGGC 58.208 50.000 0.00 0.00 0.00 4.52
514 524 0.935942 TTGGGATGGATGGATTGGCT 59.064 50.000 0.00 0.00 0.00 4.75
515 525 0.935942 TGGGATGGATGGATTGGCTT 59.064 50.000 0.00 0.00 0.00 4.35
516 526 1.133388 TGGGATGGATGGATTGGCTTC 60.133 52.381 0.00 0.00 0.00 3.86
517 527 1.625511 GGATGGATGGATTGGCTTCC 58.374 55.000 0.69 0.69 36.24 3.46
518 528 1.146566 GGATGGATGGATTGGCTTCCT 59.853 52.381 8.24 0.00 36.68 3.36
519 529 2.376518 GGATGGATGGATTGGCTTCCTA 59.623 50.000 8.24 0.00 36.68 2.94
520 530 3.181429 GGATGGATGGATTGGCTTCCTAA 60.181 47.826 8.24 0.00 36.68 2.69
521 531 3.297134 TGGATGGATTGGCTTCCTAAC 57.703 47.619 8.24 0.62 36.68 2.34
522 532 2.580322 TGGATGGATTGGCTTCCTAACA 59.420 45.455 8.24 2.71 36.68 2.41
523 533 3.011144 TGGATGGATTGGCTTCCTAACAA 59.989 43.478 8.24 0.00 36.68 2.83
524 534 4.023291 GGATGGATTGGCTTCCTAACAAA 58.977 43.478 8.24 0.00 36.68 2.83
525 535 4.466015 GGATGGATTGGCTTCCTAACAAAA 59.534 41.667 8.24 0.00 36.68 2.44
526 536 5.129320 GGATGGATTGGCTTCCTAACAAAAT 59.871 40.000 8.24 0.00 36.68 1.82
527 537 6.352137 GGATGGATTGGCTTCCTAACAAAATT 60.352 38.462 8.24 0.00 36.68 1.82
528 538 7.147742 GGATGGATTGGCTTCCTAACAAAATTA 60.148 37.037 8.24 0.00 36.68 1.40
529 539 7.169158 TGGATTGGCTTCCTAACAAAATTAG 57.831 36.000 8.24 0.00 36.68 1.73
530 540 6.951198 TGGATTGGCTTCCTAACAAAATTAGA 59.049 34.615 8.24 0.00 36.68 2.10
531 541 7.122650 TGGATTGGCTTCCTAACAAAATTAGAG 59.877 37.037 8.24 0.00 36.68 2.43
532 542 7.122799 GGATTGGCTTCCTAACAAAATTAGAGT 59.877 37.037 0.47 0.00 32.68 3.24
533 543 9.174166 GATTGGCTTCCTAACAAAATTAGAGTA 57.826 33.333 0.00 0.00 0.00 2.59
534 544 7.916914 TGGCTTCCTAACAAAATTAGAGTAC 57.083 36.000 0.00 0.00 0.00 2.73
535 545 7.686434 TGGCTTCCTAACAAAATTAGAGTACT 58.314 34.615 0.00 0.00 0.00 2.73
536 546 7.822822 TGGCTTCCTAACAAAATTAGAGTACTC 59.177 37.037 15.41 15.41 0.00 2.59
537 547 8.041919 GGCTTCCTAACAAAATTAGAGTACTCT 58.958 37.037 27.72 27.72 43.40 3.24
538 548 9.089601 GCTTCCTAACAAAATTAGAGTACTCTC 57.910 37.037 28.42 0.70 40.93 3.20
551 561 5.699097 GAGTACTCTCTTCAACTCACACT 57.301 43.478 15.91 0.00 38.56 3.55
552 562 6.079424 GAGTACTCTCTTCAACTCACACTT 57.921 41.667 15.91 0.00 38.56 3.16
553 563 5.837437 AGTACTCTCTTCAACTCACACTTG 58.163 41.667 0.00 0.00 0.00 3.16
554 564 5.594725 AGTACTCTCTTCAACTCACACTTGA 59.405 40.000 0.00 0.00 0.00 3.02
555 565 5.344743 ACTCTCTTCAACTCACACTTGAA 57.655 39.130 0.00 0.00 36.44 2.69
556 566 5.734720 ACTCTCTTCAACTCACACTTGAAA 58.265 37.500 0.00 0.00 37.22 2.69
557 567 5.814705 ACTCTCTTCAACTCACACTTGAAAG 59.185 40.000 0.00 0.00 37.22 2.62
558 568 5.734720 TCTCTTCAACTCACACTTGAAAGT 58.265 37.500 0.00 0.00 37.22 2.66
559 569 6.173339 TCTCTTCAACTCACACTTGAAAGTT 58.827 36.000 0.00 0.00 37.22 2.66
560 570 6.655003 TCTCTTCAACTCACACTTGAAAGTTT 59.345 34.615 0.00 0.00 37.22 2.66
561 571 7.822334 TCTCTTCAACTCACACTTGAAAGTTTA 59.178 33.333 0.00 0.00 37.22 2.01
562 572 7.974675 TCTTCAACTCACACTTGAAAGTTTAG 58.025 34.615 0.00 0.00 37.22 1.85
563 573 7.822334 TCTTCAACTCACACTTGAAAGTTTAGA 59.178 33.333 0.00 0.00 37.22 2.10
564 574 8.506168 TTCAACTCACACTTGAAAGTTTAGAT 57.494 30.769 0.00 0.00 37.08 1.98
565 575 8.142994 TCAACTCACACTTGAAAGTTTAGATC 57.857 34.615 0.00 0.00 37.08 2.75
566 576 7.768582 TCAACTCACACTTGAAAGTTTAGATCA 59.231 33.333 0.00 0.00 37.08 2.92
567 577 8.562892 CAACTCACACTTGAAAGTTTAGATCAT 58.437 33.333 0.00 0.00 37.08 2.45
568 578 9.778741 AACTCACACTTGAAAGTTTAGATCATA 57.221 29.630 0.00 0.00 37.08 2.15
569 579 9.209175 ACTCACACTTGAAAGTTTAGATCATAC 57.791 33.333 0.00 0.00 37.08 2.39
570 580 9.429359 CTCACACTTGAAAGTTTAGATCATACT 57.571 33.333 0.00 0.00 37.08 2.12
590 600 9.159254 TCATACTATGAGGAAAATACATCAGGT 57.841 33.333 0.00 0.00 34.23 4.00
591 601 9.212641 CATACTATGAGGAAAATACATCAGGTG 57.787 37.037 0.00 0.00 34.23 4.00
592 602 7.200434 ACTATGAGGAAAATACATCAGGTGT 57.800 36.000 0.00 0.00 44.95 4.16
593 603 7.633789 ACTATGAGGAAAATACATCAGGTGTT 58.366 34.615 0.00 0.00 42.29 3.32
594 604 7.770897 ACTATGAGGAAAATACATCAGGTGTTC 59.229 37.037 0.00 0.00 42.29 3.18
595 605 4.935205 TGAGGAAAATACATCAGGTGTTCG 59.065 41.667 0.00 0.00 42.29 3.95
596 606 3.689649 AGGAAAATACATCAGGTGTTCGC 59.310 43.478 0.00 0.00 42.29 4.70
597 607 3.689649 GGAAAATACATCAGGTGTTCGCT 59.310 43.478 0.00 0.00 42.29 4.93
598 608 4.873827 GGAAAATACATCAGGTGTTCGCTA 59.126 41.667 0.00 0.00 42.29 4.26
599 609 5.220605 GGAAAATACATCAGGTGTTCGCTAC 60.221 44.000 0.00 0.00 42.29 3.58
600 610 4.465632 AATACATCAGGTGTTCGCTACA 57.534 40.909 0.00 0.00 42.29 2.74
601 611 2.831685 ACATCAGGTGTTCGCTACAA 57.168 45.000 0.00 0.00 38.01 2.41
602 612 3.120321 ACATCAGGTGTTCGCTACAAA 57.880 42.857 0.00 0.00 38.01 2.83
603 613 3.472652 ACATCAGGTGTTCGCTACAAAA 58.527 40.909 0.00 0.00 38.01 2.44
604 614 4.072131 ACATCAGGTGTTCGCTACAAAAT 58.928 39.130 0.00 0.00 38.01 1.82
605 615 5.242434 ACATCAGGTGTTCGCTACAAAATA 58.758 37.500 0.00 0.00 38.01 1.40
606 616 5.703592 ACATCAGGTGTTCGCTACAAAATAA 59.296 36.000 0.00 0.00 38.01 1.40
607 617 6.205853 ACATCAGGTGTTCGCTACAAAATAAA 59.794 34.615 0.00 0.00 38.01 1.40
608 618 6.811253 TCAGGTGTTCGCTACAAAATAAAT 57.189 33.333 0.00 0.00 38.80 1.40
609 619 6.607689 TCAGGTGTTCGCTACAAAATAAATG 58.392 36.000 0.00 0.00 38.80 2.32
610 620 5.286082 CAGGTGTTCGCTACAAAATAAATGC 59.714 40.000 0.00 0.00 38.80 3.56
611 621 5.048364 AGGTGTTCGCTACAAAATAAATGCA 60.048 36.000 0.00 0.00 38.80 3.96
612 622 5.631512 GGTGTTCGCTACAAAATAAATGCAA 59.368 36.000 0.00 0.00 38.80 4.08
613 623 6.399564 GGTGTTCGCTACAAAATAAATGCAAC 60.400 38.462 0.00 0.00 38.80 4.17
614 624 6.143118 GTGTTCGCTACAAAATAAATGCAACA 59.857 34.615 0.00 0.00 38.80 3.33
615 625 6.865726 TGTTCGCTACAAAATAAATGCAACAT 59.134 30.769 0.00 0.00 32.64 2.71
616 626 6.867799 TCGCTACAAAATAAATGCAACATG 57.132 33.333 0.00 0.00 0.00 3.21
617 627 5.804473 TCGCTACAAAATAAATGCAACATGG 59.196 36.000 0.00 0.00 0.00 3.66
618 628 5.804473 CGCTACAAAATAAATGCAACATGGA 59.196 36.000 0.00 0.00 0.00 3.41
619 629 6.309980 CGCTACAAAATAAATGCAACATGGAA 59.690 34.615 0.00 0.00 0.00 3.53
620 630 7.455447 GCTACAAAATAAATGCAACATGGAAC 58.545 34.615 0.00 0.00 0.00 3.62
635 645 3.576078 TGGAACATGTGTGGAAGAACT 57.424 42.857 0.00 0.00 0.00 3.01
636 646 4.698201 TGGAACATGTGTGGAAGAACTA 57.302 40.909 0.00 0.00 0.00 2.24
637 647 5.042463 TGGAACATGTGTGGAAGAACTAA 57.958 39.130 0.00 0.00 0.00 2.24
638 648 5.441500 TGGAACATGTGTGGAAGAACTAAA 58.558 37.500 0.00 0.00 0.00 1.85
639 649 5.888724 TGGAACATGTGTGGAAGAACTAAAA 59.111 36.000 0.00 0.00 0.00 1.52
640 650 6.549364 TGGAACATGTGTGGAAGAACTAAAAT 59.451 34.615 0.00 0.00 0.00 1.82
641 651 7.069331 TGGAACATGTGTGGAAGAACTAAAATT 59.931 33.333 0.00 0.00 0.00 1.82
642 652 7.926018 GGAACATGTGTGGAAGAACTAAAATTT 59.074 33.333 0.00 0.00 0.00 1.82
643 653 9.313118 GAACATGTGTGGAAGAACTAAAATTTT 57.687 29.630 8.75 8.75 0.00 1.82
644 654 8.647143 ACATGTGTGGAAGAACTAAAATTTTG 57.353 30.769 13.76 6.30 0.00 2.44
645 655 7.710475 ACATGTGTGGAAGAACTAAAATTTTGG 59.290 33.333 13.76 12.99 0.00 3.28
646 656 6.578023 TGTGTGGAAGAACTAAAATTTTGGG 58.422 36.000 17.35 10.66 0.00 4.12
647 657 5.989168 GTGTGGAAGAACTAAAATTTTGGGG 59.011 40.000 17.35 8.52 0.00 4.96
648 658 5.071115 TGTGGAAGAACTAAAATTTTGGGGG 59.929 40.000 17.35 6.41 0.00 5.40
649 659 5.071250 GTGGAAGAACTAAAATTTTGGGGGT 59.929 40.000 17.35 5.18 0.00 4.95
650 660 5.668080 TGGAAGAACTAAAATTTTGGGGGTT 59.332 36.000 17.35 13.55 0.00 4.11
651 661 5.995282 GGAAGAACTAAAATTTTGGGGGTTG 59.005 40.000 17.35 1.40 0.00 3.77
652 662 5.560722 AGAACTAAAATTTTGGGGGTTGG 57.439 39.130 17.35 0.00 0.00 3.77
653 663 4.349636 AGAACTAAAATTTTGGGGGTTGGG 59.650 41.667 17.35 0.00 0.00 4.12
654 664 2.983192 ACTAAAATTTTGGGGGTTGGGG 59.017 45.455 17.35 0.00 0.00 4.96
655 665 2.214364 AAAATTTTGGGGGTTGGGGA 57.786 45.000 1.75 0.00 0.00 4.81
656 666 2.449360 AAATTTTGGGGGTTGGGGAT 57.551 45.000 0.00 0.00 0.00 3.85
657 667 1.667595 AATTTTGGGGGTTGGGGATG 58.332 50.000 0.00 0.00 0.00 3.51
658 668 0.253113 ATTTTGGGGGTTGGGGATGG 60.253 55.000 0.00 0.00 0.00 3.51
659 669 2.408495 TTTTGGGGGTTGGGGATGGG 62.408 60.000 0.00 0.00 0.00 4.00
663 673 4.074408 GGGTTGGGGATGGGGGTG 62.074 72.222 0.00 0.00 0.00 4.61
664 674 4.074408 GGTTGGGGATGGGGGTGG 62.074 72.222 0.00 0.00 0.00 4.61
665 675 4.074408 GTTGGGGATGGGGGTGGG 62.074 72.222 0.00 0.00 0.00 4.61
669 679 4.883414 GGGATGGGGGTGGGGGAT 62.883 72.222 0.00 0.00 0.00 3.85
670 680 2.703808 GGATGGGGGTGGGGGATT 60.704 66.667 0.00 0.00 0.00 3.01
682 692 4.079154 GGGTGGGGGATTAAAGAAATCTCT 60.079 45.833 0.00 0.00 43.62 3.10
780 848 5.998363 AGTCAAGAACTCTATTCCCAAACAC 59.002 40.000 0.00 0.00 30.02 3.32
844 940 3.099267 AGAACTCGACACCACAAGAAG 57.901 47.619 0.00 0.00 0.00 2.85
847 943 0.861837 CTCGACACCACAAGAAGCAC 59.138 55.000 0.00 0.00 0.00 4.40
848 944 0.176910 TCGACACCACAAGAAGCACA 59.823 50.000 0.00 0.00 0.00 4.57
871 968 8.735315 CACACACCATTACATAGTTCCATTTAA 58.265 33.333 0.00 0.00 0.00 1.52
948 1046 1.271054 GCCAGGAGAACAGAGCTTCAA 60.271 52.381 0.00 0.00 0.00 2.69
982 1080 2.356278 GCAAGGCTGGTCCATGGA 59.644 61.111 11.44 11.44 34.23 3.41
994 1092 2.237143 GGTCCATGGAGTGATTCAGTCA 59.763 50.000 16.81 9.19 35.69 3.41
1027 1125 0.757935 GGCGAGGGGTATACCAGTCA 60.758 60.000 23.33 0.00 42.91 3.41
1078 1176 1.112113 TGTAAGGAGACTCCGGCATC 58.888 55.000 15.97 6.99 42.75 3.91
1129 1227 2.331893 CGTTTTCGGCAGCCCATCA 61.332 57.895 5.63 0.00 39.94 3.07
1183 1281 2.044946 GGGGAGTTTGATGGCGCT 60.045 61.111 7.64 0.00 0.00 5.92
1246 1344 1.027357 GGTGGTGGATGCTGCTTATG 58.973 55.000 0.00 0.00 0.00 1.90
1323 1421 2.196319 GCTCTTGCTGGGAAATGGG 58.804 57.895 0.00 0.00 36.03 4.00
1376 1474 4.261578 AGTAGCACGCAAAGGTACTAAA 57.738 40.909 9.35 0.00 45.43 1.85
1379 1477 6.579865 AGTAGCACGCAAAGGTACTAAATAT 58.420 36.000 9.35 0.00 45.43 1.28
1380 1478 5.986004 AGCACGCAAAGGTACTAAATATC 57.014 39.130 0.00 0.00 38.49 1.63
1381 1479 5.671493 AGCACGCAAAGGTACTAAATATCT 58.329 37.500 0.00 0.00 38.49 1.98
1382 1480 6.113411 AGCACGCAAAGGTACTAAATATCTT 58.887 36.000 0.00 0.00 38.49 2.40
1383 1481 6.037172 AGCACGCAAAGGTACTAAATATCTTG 59.963 38.462 0.00 0.00 38.49 3.02
1384 1482 6.192360 CACGCAAAGGTACTAAATATCTTGC 58.808 40.000 0.00 0.00 38.49 4.01
1385 1483 5.878116 ACGCAAAGGTACTAAATATCTTGCA 59.122 36.000 0.00 0.00 38.49 4.08
1419 1551 6.041637 AGCATGCTCATGATGAATTTGGTAAT 59.958 34.615 16.30 0.00 41.20 1.89
1420 1552 6.145534 GCATGCTCATGATGAATTTGGTAATG 59.854 38.462 11.37 0.00 41.20 1.90
1447 1579 9.947433 TTGATTTATGAAAAGATGATTTTGGCT 57.053 25.926 0.00 0.00 0.00 4.75
1608 1740 8.137437 CCAATTAACACTGTTCAAATTCAGAGT 58.863 33.333 0.00 0.00 37.16 3.24
1612 1746 2.808543 ACTGTTCAAATTCAGAGTCGGC 59.191 45.455 0.00 0.00 35.84 5.54
1627 1761 3.522553 AGTCGGCAACTTCTTATACAGC 58.477 45.455 0.00 0.00 33.03 4.40
1628 1762 3.195825 AGTCGGCAACTTCTTATACAGCT 59.804 43.478 0.00 0.00 33.03 4.24
1629 1763 3.933332 GTCGGCAACTTCTTATACAGCTT 59.067 43.478 0.00 0.00 0.00 3.74
1665 1805 8.239314 TGAAATGCAATTGTTAGAACTCTGATC 58.761 33.333 7.40 0.00 36.10 2.92
1666 1806 5.784750 TGCAATTGTTAGAACTCTGATCG 57.215 39.130 7.40 0.00 0.00 3.69
1667 1807 4.631377 TGCAATTGTTAGAACTCTGATCGG 59.369 41.667 7.40 0.00 0.00 4.18
1668 1808 4.494855 GCAATTGTTAGAACTCTGATCGGC 60.495 45.833 7.40 0.00 0.00 5.54
1669 1809 3.953712 TTGTTAGAACTCTGATCGGCA 57.046 42.857 0.00 0.00 0.00 5.69
1684 1837 1.138671 GGCACGCACACACAAAACT 59.861 52.632 0.00 0.00 0.00 2.66
1686 1839 1.202200 GGCACGCACACACAAAACTTA 60.202 47.619 0.00 0.00 0.00 2.24
1688 1841 2.917971 GCACGCACACACAAAACTTAAA 59.082 40.909 0.00 0.00 0.00 1.52
1695 1860 5.276820 GCACACACAAAACTTAAATTGGAGC 60.277 40.000 0.00 0.00 0.00 4.70
1712 1877 2.337583 GAGCGCTGACTGTAAATGACA 58.662 47.619 18.48 0.00 36.35 3.58
1715 1880 2.223144 GCGCTGACTGTAAATGACACAA 59.777 45.455 0.00 0.00 33.31 3.33
1732 1897 4.910195 ACACAATTCACATCTCAGGCTAA 58.090 39.130 0.00 0.00 0.00 3.09
1733 1898 4.697352 ACACAATTCACATCTCAGGCTAAC 59.303 41.667 0.00 0.00 0.00 2.34
1734 1899 4.940046 CACAATTCACATCTCAGGCTAACT 59.060 41.667 0.00 0.00 0.00 2.24
1735 1900 6.108687 CACAATTCACATCTCAGGCTAACTA 58.891 40.000 0.00 0.00 0.00 2.24
1738 1903 7.831193 ACAATTCACATCTCAGGCTAACTAATT 59.169 33.333 0.00 0.00 0.00 1.40
1739 1904 9.330063 CAATTCACATCTCAGGCTAACTAATTA 57.670 33.333 0.00 0.00 0.00 1.40
1740 1905 9.905713 AATTCACATCTCAGGCTAACTAATTAA 57.094 29.630 0.00 0.00 0.00 1.40
1764 1930 1.003866 GAAACTATTTAGCTGCCGCCG 60.004 52.381 0.00 0.00 36.60 6.46
1768 1934 1.792949 CTATTTAGCTGCCGCCGTTAG 59.207 52.381 0.00 0.00 36.60 2.34
1776 1942 1.067582 GCCGCCGTTAGCACTCTAT 59.932 57.895 0.00 0.00 44.04 1.98
1783 1949 5.288712 CCGCCGTTAGCACTCTATATATTTG 59.711 44.000 0.00 0.00 44.04 2.32
1785 1951 6.033619 CGCCGTTAGCACTCTATATATTTGAC 59.966 42.308 0.00 0.00 44.04 3.18
1786 1952 7.091443 GCCGTTAGCACTCTATATATTTGACT 58.909 38.462 0.00 0.00 42.97 3.41
1787 1953 7.599245 GCCGTTAGCACTCTATATATTTGACTT 59.401 37.037 0.00 0.00 42.97 3.01
1788 1954 9.477484 CCGTTAGCACTCTATATATTTGACTTT 57.523 33.333 0.00 0.00 0.00 2.66
1855 2021 4.014569 ACACCAAACCAAACAAGCTTTT 57.985 36.364 0.00 0.00 0.00 2.27
1864 2030 8.379902 CAAACCAAACAAGCTTTTAACAGTAAG 58.620 33.333 0.00 0.00 0.00 2.34
1865 2031 6.569780 ACCAAACAAGCTTTTAACAGTAAGG 58.430 36.000 0.00 0.00 0.00 2.69
1866 2032 6.153851 ACCAAACAAGCTTTTAACAGTAAGGT 59.846 34.615 0.00 0.00 33.84 3.50
1867 2033 6.695713 CCAAACAAGCTTTTAACAGTAAGGTC 59.304 38.462 0.00 0.00 31.41 3.85
1868 2034 7.416326 CCAAACAAGCTTTTAACAGTAAGGTCT 60.416 37.037 0.00 0.00 31.41 3.85
1869 2035 6.862711 ACAAGCTTTTAACAGTAAGGTCTC 57.137 37.500 0.00 0.00 31.41 3.36
1872 2038 7.338449 ACAAGCTTTTAACAGTAAGGTCTCAAA 59.662 33.333 0.00 0.00 31.41 2.69
1875 2050 8.914011 AGCTTTTAACAGTAAGGTCTCAAAATT 58.086 29.630 0.00 0.00 0.00 1.82
1933 2108 2.693267 ACCGAAACCAGATCTAAGCC 57.307 50.000 0.00 0.00 0.00 4.35
1939 2120 4.621747 CGAAACCAGATCTAAGCCAGAAGT 60.622 45.833 0.00 0.00 36.67 3.01
1953 2134 6.128138 AGCCAGAAGTCTAAACTAAACCAT 57.872 37.500 0.00 0.00 33.48 3.55
1975 2156 1.626825 ACTAGCCGGCTTTAACCTTGA 59.373 47.619 37.74 12.50 0.00 3.02
1994 2175 1.376424 CAGGAAGCCGCATCACACT 60.376 57.895 0.00 0.00 0.00 3.55
1999 2180 0.321919 AAGCCGCATCACACTCACAT 60.322 50.000 0.00 0.00 0.00 3.21
2007 2188 3.181513 GCATCACACTCACATGCACTAAG 60.182 47.826 0.00 0.00 42.18 2.18
2013 2194 6.073058 TCACACTCACATGCACTAAGAAATTC 60.073 38.462 0.00 0.00 0.00 2.17
2014 2195 5.764686 ACACTCACATGCACTAAGAAATTCA 59.235 36.000 0.00 0.00 0.00 2.57
2015 2196 6.072838 ACACTCACATGCACTAAGAAATTCAG 60.073 38.462 0.00 0.00 0.00 3.02
2016 2197 6.148315 CACTCACATGCACTAAGAAATTCAGA 59.852 38.462 0.00 0.00 0.00 3.27
2017 2198 6.370994 ACTCACATGCACTAAGAAATTCAGAG 59.629 38.462 0.00 0.00 0.00 3.35
2022 2203 8.632679 ACATGCACTAAGAAATTCAGAGAAAAA 58.367 29.630 0.00 0.00 0.00 1.94
2047 2228 9.841295 AATAATTAATTAGAAACTCGTGCCCTA 57.159 29.630 13.15 0.00 0.00 3.53
2050 2231 3.863142 TTAGAAACTCGTGCCCTACTC 57.137 47.619 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.979537 AGACCCTAAACAAAAAGAACAATCAAC 59.020 33.333 0.00 0.00 0.00 3.18
7 8 6.544564 TCGAGACCCTAAACAAAAAGAACAAT 59.455 34.615 0.00 0.00 0.00 2.71
8 9 5.881443 TCGAGACCCTAAACAAAAAGAACAA 59.119 36.000 0.00 0.00 0.00 2.83
13 14 6.183360 GGATCATCGAGACCCTAAACAAAAAG 60.183 42.308 0.00 0.00 0.00 2.27
61 63 1.330655 ACTGGTATCTGTGCCCTCGG 61.331 60.000 0.00 0.00 0.00 4.63
75 77 1.620822 GGCTGAATGGTTTGACTGGT 58.379 50.000 0.00 0.00 0.00 4.00
123 125 0.736325 CTTCCCTCGTAGTTGGCACG 60.736 60.000 0.00 0.00 40.72 5.34
135 137 5.163426 GCCCTACTTAACTTAGTCTTCCCTC 60.163 48.000 0.00 0.00 0.00 4.30
136 138 4.715792 GCCCTACTTAACTTAGTCTTCCCT 59.284 45.833 0.00 0.00 0.00 4.20
164 166 2.175715 GGGATTCCATAGCCTTCCACTT 59.824 50.000 4.80 0.00 0.00 3.16
192 194 4.780815 TGTTCCTTCAGTCACATGAAAGT 58.219 39.130 0.00 0.00 38.66 2.66
229 232 8.919777 AGCTTAACACTAAAGGTCTAAAACAT 57.080 30.769 0.00 0.00 28.88 2.71
280 283 3.882888 CCTTTTGGTGTCTTAGCAACAGA 59.117 43.478 6.58 0.00 45.67 3.41
283 286 3.219281 TCCCTTTTGGTGTCTTAGCAAC 58.781 45.455 0.00 0.00 45.67 4.17
361 371 6.600882 AATTTGAAAGACAGCCAATCAGAT 57.399 33.333 0.00 0.00 0.00 2.90
362 372 5.335113 CGAATTTGAAAGACAGCCAATCAGA 60.335 40.000 0.00 0.00 0.00 3.27
363 373 4.855388 CGAATTTGAAAGACAGCCAATCAG 59.145 41.667 0.00 0.00 0.00 2.90
364 374 4.518590 TCGAATTTGAAAGACAGCCAATCA 59.481 37.500 0.00 0.00 0.00 2.57
365 375 5.046910 TCGAATTTGAAAGACAGCCAATC 57.953 39.130 0.00 0.00 0.00 2.67
366 376 5.452078 TTCGAATTTGAAAGACAGCCAAT 57.548 34.783 5.60 0.00 0.00 3.16
367 377 4.909696 TTCGAATTTGAAAGACAGCCAA 57.090 36.364 5.60 0.00 0.00 4.52
368 378 4.499019 GGTTTCGAATTTGAAAGACAGCCA 60.499 41.667 19.21 0.00 38.45 4.75
369 379 3.981416 GGTTTCGAATTTGAAAGACAGCC 59.019 43.478 19.21 13.22 38.45 4.85
370 380 4.441087 GTGGTTTCGAATTTGAAAGACAGC 59.559 41.667 19.21 9.85 38.45 4.40
371 381 5.821204 AGTGGTTTCGAATTTGAAAGACAG 58.179 37.500 19.21 0.00 38.45 3.51
372 382 5.828299 AGTGGTTTCGAATTTGAAAGACA 57.172 34.783 19.21 17.46 38.45 3.41
373 383 5.051708 GCAAGTGGTTTCGAATTTGAAAGAC 60.052 40.000 19.21 17.48 38.45 3.01
374 384 5.040635 GCAAGTGGTTTCGAATTTGAAAGA 58.959 37.500 19.21 8.09 38.45 2.52
375 385 5.043248 AGCAAGTGGTTTCGAATTTGAAAG 58.957 37.500 19.21 9.15 38.45 2.62
376 386 4.803088 CAGCAAGTGGTTTCGAATTTGAAA 59.197 37.500 15.57 15.57 35.58 2.69
377 387 4.358851 CAGCAAGTGGTTTCGAATTTGAA 58.641 39.130 3.86 3.86 0.00 2.69
378 388 3.795150 GCAGCAAGTGGTTTCGAATTTGA 60.795 43.478 0.00 0.00 0.00 2.69
379 389 2.472488 GCAGCAAGTGGTTTCGAATTTG 59.528 45.455 0.00 1.04 0.00 2.32
380 390 2.362077 AGCAGCAAGTGGTTTCGAATTT 59.638 40.909 0.00 0.00 30.62 1.82
381 391 1.956477 AGCAGCAAGTGGTTTCGAATT 59.044 42.857 0.00 0.00 30.62 2.17
382 392 1.609208 AGCAGCAAGTGGTTTCGAAT 58.391 45.000 0.00 0.00 30.62 3.34
383 393 1.388547 AAGCAGCAAGTGGTTTCGAA 58.611 45.000 0.00 0.00 44.72 3.71
384 394 3.094386 AAGCAGCAAGTGGTTTCGA 57.906 47.368 0.00 0.00 44.72 3.71
389 399 1.767759 AAACAGAAGCAGCAAGTGGT 58.232 45.000 0.00 0.00 39.08 4.16
390 400 3.141398 TCTAAACAGAAGCAGCAAGTGG 58.859 45.455 0.00 0.00 0.00 4.00
391 401 4.214971 ACATCTAAACAGAAGCAGCAAGTG 59.785 41.667 0.00 0.00 0.00 3.16
392 402 4.214971 CACATCTAAACAGAAGCAGCAAGT 59.785 41.667 0.00 0.00 0.00 3.16
393 403 4.453478 TCACATCTAAACAGAAGCAGCAAG 59.547 41.667 0.00 0.00 0.00 4.01
394 404 4.388485 TCACATCTAAACAGAAGCAGCAA 58.612 39.130 0.00 0.00 0.00 3.91
395 405 4.006780 TCACATCTAAACAGAAGCAGCA 57.993 40.909 0.00 0.00 0.00 4.41
396 406 5.330295 CATTCACATCTAAACAGAAGCAGC 58.670 41.667 0.00 0.00 0.00 5.25
397 407 5.645067 TCCATTCACATCTAAACAGAAGCAG 59.355 40.000 0.00 0.00 0.00 4.24
398 408 5.559770 TCCATTCACATCTAAACAGAAGCA 58.440 37.500 0.00 0.00 0.00 3.91
399 409 6.690194 ATCCATTCACATCTAAACAGAAGC 57.310 37.500 0.00 0.00 0.00 3.86
400 410 9.994432 GTAAATCCATTCACATCTAAACAGAAG 57.006 33.333 0.00 0.00 0.00 2.85
401 411 9.513906 TGTAAATCCATTCACATCTAAACAGAA 57.486 29.630 0.00 0.00 0.00 3.02
402 412 9.166173 CTGTAAATCCATTCACATCTAAACAGA 57.834 33.333 0.00 0.00 31.97 3.41
403 413 8.400947 CCTGTAAATCCATTCACATCTAAACAG 58.599 37.037 0.00 0.00 0.00 3.16
404 414 7.888021 ACCTGTAAATCCATTCACATCTAAACA 59.112 33.333 0.00 0.00 0.00 2.83
405 415 8.281212 ACCTGTAAATCCATTCACATCTAAAC 57.719 34.615 0.00 0.00 0.00 2.01
406 416 8.106462 TGACCTGTAAATCCATTCACATCTAAA 58.894 33.333 0.00 0.00 0.00 1.85
407 417 7.629157 TGACCTGTAAATCCATTCACATCTAA 58.371 34.615 0.00 0.00 0.00 2.10
408 418 7.194112 TGACCTGTAAATCCATTCACATCTA 57.806 36.000 0.00 0.00 0.00 1.98
409 419 6.065976 TGACCTGTAAATCCATTCACATCT 57.934 37.500 0.00 0.00 0.00 2.90
410 420 6.757897 TTGACCTGTAAATCCATTCACATC 57.242 37.500 0.00 0.00 0.00 3.06
411 421 6.350445 GCTTTGACCTGTAAATCCATTCACAT 60.350 38.462 0.00 0.00 0.00 3.21
412 422 5.048083 GCTTTGACCTGTAAATCCATTCACA 60.048 40.000 0.00 0.00 0.00 3.58
413 423 5.402398 GCTTTGACCTGTAAATCCATTCAC 58.598 41.667 0.00 0.00 0.00 3.18
414 424 4.155826 CGCTTTGACCTGTAAATCCATTCA 59.844 41.667 0.00 0.00 0.00 2.57
415 425 4.394920 TCGCTTTGACCTGTAAATCCATTC 59.605 41.667 0.00 0.00 0.00 2.67
416 426 4.331968 TCGCTTTGACCTGTAAATCCATT 58.668 39.130 0.00 0.00 0.00 3.16
417 427 3.941483 CTCGCTTTGACCTGTAAATCCAT 59.059 43.478 0.00 0.00 0.00 3.41
418 428 3.334691 CTCGCTTTGACCTGTAAATCCA 58.665 45.455 0.00 0.00 0.00 3.41
419 429 2.096013 GCTCGCTTTGACCTGTAAATCC 59.904 50.000 0.00 0.00 0.00 3.01
420 430 2.742053 TGCTCGCTTTGACCTGTAAATC 59.258 45.455 0.00 0.00 0.00 2.17
421 431 2.484264 GTGCTCGCTTTGACCTGTAAAT 59.516 45.455 0.00 0.00 0.00 1.40
422 432 1.871039 GTGCTCGCTTTGACCTGTAAA 59.129 47.619 0.00 0.00 0.00 2.01
423 433 1.202592 TGTGCTCGCTTTGACCTGTAA 60.203 47.619 0.00 0.00 0.00 2.41
424 434 0.391228 TGTGCTCGCTTTGACCTGTA 59.609 50.000 0.00 0.00 0.00 2.74
425 435 0.463654 TTGTGCTCGCTTTGACCTGT 60.464 50.000 0.00 0.00 0.00 4.00
426 436 0.662619 TTTGTGCTCGCTTTGACCTG 59.337 50.000 0.00 0.00 0.00 4.00
427 437 0.663153 GTTTGTGCTCGCTTTGACCT 59.337 50.000 0.00 0.00 0.00 3.85
428 438 0.317854 GGTTTGTGCTCGCTTTGACC 60.318 55.000 0.00 0.00 0.00 4.02
429 439 0.380378 TGGTTTGTGCTCGCTTTGAC 59.620 50.000 0.00 0.00 0.00 3.18
430 440 1.098869 TTGGTTTGTGCTCGCTTTGA 58.901 45.000 0.00 0.00 0.00 2.69
431 441 1.587946 GTTTGGTTTGTGCTCGCTTTG 59.412 47.619 0.00 0.00 0.00 2.77
432 442 1.203523 TGTTTGGTTTGTGCTCGCTTT 59.796 42.857 0.00 0.00 0.00 3.51
433 443 0.814457 TGTTTGGTTTGTGCTCGCTT 59.186 45.000 0.00 0.00 0.00 4.68
434 444 0.814457 TTGTTTGGTTTGTGCTCGCT 59.186 45.000 0.00 0.00 0.00 4.93
435 445 0.920664 GTTGTTTGGTTTGTGCTCGC 59.079 50.000 0.00 0.00 0.00 5.03
436 446 1.135257 TGGTTGTTTGGTTTGTGCTCG 60.135 47.619 0.00 0.00 0.00 5.03
437 447 2.663826 TGGTTGTTTGGTTTGTGCTC 57.336 45.000 0.00 0.00 0.00 4.26
438 448 2.235898 ACATGGTTGTTTGGTTTGTGCT 59.764 40.909 0.00 0.00 29.55 4.40
439 449 2.607180 GACATGGTTGTTTGGTTTGTGC 59.393 45.455 0.00 0.00 35.79 4.57
440 450 2.857152 CGACATGGTTGTTTGGTTTGTG 59.143 45.455 0.00 0.00 35.79 3.33
441 451 2.737039 GCGACATGGTTGTTTGGTTTGT 60.737 45.455 0.00 0.00 35.79 2.83
442 452 1.857837 GCGACATGGTTGTTTGGTTTG 59.142 47.619 0.00 0.00 35.79 2.93
443 453 1.754226 AGCGACATGGTTGTTTGGTTT 59.246 42.857 0.00 0.00 35.79 3.27
444 454 1.398692 AGCGACATGGTTGTTTGGTT 58.601 45.000 0.00 0.00 35.79 3.67
445 455 1.336755 GAAGCGACATGGTTGTTTGGT 59.663 47.619 0.00 0.00 38.70 3.67
446 456 1.335872 GGAAGCGACATGGTTGTTTGG 60.336 52.381 0.00 0.00 38.70 3.28
447 457 1.608590 AGGAAGCGACATGGTTGTTTG 59.391 47.619 0.00 0.00 38.70 2.93
448 458 1.981256 AGGAAGCGACATGGTTGTTT 58.019 45.000 0.00 0.00 38.70 2.83
449 459 1.880027 GAAGGAAGCGACATGGTTGTT 59.120 47.619 0.00 0.00 38.70 2.83
450 460 1.202758 TGAAGGAAGCGACATGGTTGT 60.203 47.619 0.00 0.00 38.70 3.32
451 461 1.522668 TGAAGGAAGCGACATGGTTG 58.477 50.000 0.00 0.00 38.70 3.77
452 462 2.154462 CTTGAAGGAAGCGACATGGTT 58.846 47.619 0.00 0.00 42.02 3.67
453 463 1.072331 ACTTGAAGGAAGCGACATGGT 59.928 47.619 0.00 0.00 34.68 3.55
454 464 1.813513 ACTTGAAGGAAGCGACATGG 58.186 50.000 0.00 0.00 34.68 3.66
455 465 3.904136 AAACTTGAAGGAAGCGACATG 57.096 42.857 0.00 0.00 34.68 3.21
456 466 4.215613 GGTAAAACTTGAAGGAAGCGACAT 59.784 41.667 0.00 0.00 34.68 3.06
457 467 3.562557 GGTAAAACTTGAAGGAAGCGACA 59.437 43.478 0.00 0.00 34.68 4.35
458 468 3.562557 TGGTAAAACTTGAAGGAAGCGAC 59.437 43.478 0.00 0.00 34.68 5.19
459 469 3.811083 TGGTAAAACTTGAAGGAAGCGA 58.189 40.909 0.00 0.00 34.68 4.93
460 470 3.609409 GCTGGTAAAACTTGAAGGAAGCG 60.609 47.826 0.00 0.00 34.68 4.68
461 471 3.317993 TGCTGGTAAAACTTGAAGGAAGC 59.682 43.478 0.00 0.00 34.68 3.86
462 472 4.022849 CCTGCTGGTAAAACTTGAAGGAAG 60.023 45.833 0.51 0.00 37.73 3.46
463 473 3.888930 CCTGCTGGTAAAACTTGAAGGAA 59.111 43.478 0.51 0.00 0.00 3.36
464 474 3.486383 CCTGCTGGTAAAACTTGAAGGA 58.514 45.455 0.51 0.00 0.00 3.36
465 475 2.029918 GCCTGCTGGTAAAACTTGAAGG 60.030 50.000 11.69 0.00 35.27 3.46
466 476 2.887152 AGCCTGCTGGTAAAACTTGAAG 59.113 45.455 11.69 0.00 35.27 3.02
467 477 2.622942 CAGCCTGCTGGTAAAACTTGAA 59.377 45.455 11.31 0.00 40.17 2.69
468 478 2.229792 CAGCCTGCTGGTAAAACTTGA 58.770 47.619 11.31 0.00 40.17 3.02
469 479 1.336240 GCAGCCTGCTGGTAAAACTTG 60.336 52.381 19.88 0.99 43.77 3.16
470 480 0.961753 GCAGCCTGCTGGTAAAACTT 59.038 50.000 19.88 0.00 43.77 2.66
471 481 0.178992 TGCAGCCTGCTGGTAAAACT 60.179 50.000 18.96 0.00 45.31 2.66
472 482 0.242017 CTGCAGCCTGCTGGTAAAAC 59.758 55.000 18.96 3.58 45.31 2.43
473 483 2.644887 CTGCAGCCTGCTGGTAAAA 58.355 52.632 18.96 0.00 45.31 1.52
474 484 4.402851 CTGCAGCCTGCTGGTAAA 57.597 55.556 18.96 0.00 45.31 2.01
479 489 1.006571 CAAAACCTGCAGCCTGCTG 60.007 57.895 18.96 17.31 45.31 4.41
480 490 2.205152 CCAAAACCTGCAGCCTGCT 61.205 57.895 18.96 0.00 45.31 4.24
481 491 2.341176 CCAAAACCTGCAGCCTGC 59.659 61.111 10.45 10.45 45.29 4.85
482 492 0.901580 ATCCCAAAACCTGCAGCCTG 60.902 55.000 8.66 1.91 0.00 4.85
483 493 0.901580 CATCCCAAAACCTGCAGCCT 60.902 55.000 8.66 0.00 0.00 4.58
484 494 1.593265 CATCCCAAAACCTGCAGCC 59.407 57.895 8.66 0.00 0.00 4.85
485 495 0.899717 TCCATCCCAAAACCTGCAGC 60.900 55.000 8.66 0.00 0.00 5.25
486 496 1.479323 CATCCATCCCAAAACCTGCAG 59.521 52.381 6.78 6.78 0.00 4.41
487 497 1.559368 CATCCATCCCAAAACCTGCA 58.441 50.000 0.00 0.00 0.00 4.41
488 498 0.826062 CCATCCATCCCAAAACCTGC 59.174 55.000 0.00 0.00 0.00 4.85
489 499 2.530460 TCCATCCATCCCAAAACCTG 57.470 50.000 0.00 0.00 0.00 4.00
490 500 3.377573 CAATCCATCCATCCCAAAACCT 58.622 45.455 0.00 0.00 0.00 3.50
491 501 2.435437 CCAATCCATCCATCCCAAAACC 59.565 50.000 0.00 0.00 0.00 3.27
492 502 2.158914 GCCAATCCATCCATCCCAAAAC 60.159 50.000 0.00 0.00 0.00 2.43
493 503 2.117865 GCCAATCCATCCATCCCAAAA 58.882 47.619 0.00 0.00 0.00 2.44
494 504 1.291637 AGCCAATCCATCCATCCCAAA 59.708 47.619 0.00 0.00 0.00 3.28
495 505 0.935942 AGCCAATCCATCCATCCCAA 59.064 50.000 0.00 0.00 0.00 4.12
496 506 0.935942 AAGCCAATCCATCCATCCCA 59.064 50.000 0.00 0.00 0.00 4.37
497 507 1.625511 GAAGCCAATCCATCCATCCC 58.374 55.000 0.00 0.00 0.00 3.85
498 508 1.146566 AGGAAGCCAATCCATCCATCC 59.853 52.381 3.88 0.00 42.27 3.51
499 509 2.671896 AGGAAGCCAATCCATCCATC 57.328 50.000 3.88 0.00 42.27 3.51
500 510 3.205056 TGTTAGGAAGCCAATCCATCCAT 59.795 43.478 3.88 0.00 42.27 3.41
501 511 2.580322 TGTTAGGAAGCCAATCCATCCA 59.420 45.455 3.88 0.00 42.27 3.41
502 512 3.297134 TGTTAGGAAGCCAATCCATCC 57.703 47.619 3.88 0.00 42.27 3.51
503 513 5.659440 TTTTGTTAGGAAGCCAATCCATC 57.341 39.130 3.88 0.00 42.27 3.51
504 514 6.625532 AATTTTGTTAGGAAGCCAATCCAT 57.374 33.333 3.88 0.00 42.27 3.41
505 515 6.951198 TCTAATTTTGTTAGGAAGCCAATCCA 59.049 34.615 3.88 0.00 42.27 3.41
506 516 7.122799 ACTCTAATTTTGTTAGGAAGCCAATCC 59.877 37.037 0.00 0.00 39.96 3.01
507 517 8.056407 ACTCTAATTTTGTTAGGAAGCCAATC 57.944 34.615 0.00 0.00 0.00 2.67
508 518 8.957466 GTACTCTAATTTTGTTAGGAAGCCAAT 58.043 33.333 0.00 0.00 0.00 3.16
509 519 8.161425 AGTACTCTAATTTTGTTAGGAAGCCAA 58.839 33.333 0.00 0.00 0.00 4.52
510 520 7.686434 AGTACTCTAATTTTGTTAGGAAGCCA 58.314 34.615 0.00 0.00 0.00 4.75
511 521 8.041919 AGAGTACTCTAATTTTGTTAGGAAGCC 58.958 37.037 24.04 0.00 38.35 4.35
512 522 9.089601 GAGAGTACTCTAATTTTGTTAGGAAGC 57.910 37.037 25.23 3.15 40.61 3.86
529 539 5.699097 AGTGTGAGTTGAAGAGAGTACTC 57.301 43.478 15.41 15.41 42.90 2.59
530 540 5.594725 TCAAGTGTGAGTTGAAGAGAGTACT 59.405 40.000 0.00 0.00 34.83 2.73
531 541 5.833082 TCAAGTGTGAGTTGAAGAGAGTAC 58.167 41.667 0.00 0.00 34.83 2.73
532 542 6.465439 TTCAAGTGTGAGTTGAAGAGAGTA 57.535 37.500 3.03 0.00 41.22 2.59
533 543 5.344743 TTCAAGTGTGAGTTGAAGAGAGT 57.655 39.130 3.03 0.00 41.22 3.24
534 544 5.814705 ACTTTCAAGTGTGAGTTGAAGAGAG 59.185 40.000 15.40 10.27 45.16 3.20
535 545 5.734720 ACTTTCAAGTGTGAGTTGAAGAGA 58.265 37.500 15.40 2.25 45.16 3.10
536 546 6.428385 AACTTTCAAGTGTGAGTTGAAGAG 57.572 37.500 6.67 9.19 45.16 2.85
537 547 6.817765 AAACTTTCAAGTGTGAGTTGAAGA 57.182 33.333 6.67 0.27 45.16 2.87
538 548 7.974675 TCTAAACTTTCAAGTGTGAGTTGAAG 58.025 34.615 6.67 4.98 45.16 3.02
539 549 7.915293 TCTAAACTTTCAAGTGTGAGTTGAA 57.085 32.000 3.03 3.03 43.53 2.69
540 550 7.768582 TGATCTAAACTTTCAAGTGTGAGTTGA 59.231 33.333 0.00 0.00 39.66 3.18
541 551 7.919690 TGATCTAAACTTTCAAGTGTGAGTTG 58.080 34.615 0.00 0.00 39.66 3.16
542 552 8.682936 ATGATCTAAACTTTCAAGTGTGAGTT 57.317 30.769 0.00 0.00 39.66 3.01
543 553 9.209175 GTATGATCTAAACTTTCAAGTGTGAGT 57.791 33.333 0.00 0.00 39.66 3.41
544 554 9.429359 AGTATGATCTAAACTTTCAAGTGTGAG 57.571 33.333 0.00 0.00 39.66 3.51
564 574 9.159254 ACCTGATGTATTTTCCTCATAGTATGA 57.841 33.333 12.28 12.28 37.76 2.15
565 575 9.212641 CACCTGATGTATTTTCCTCATAGTATG 57.787 37.037 3.55 3.55 0.00 2.39
566 576 8.938883 ACACCTGATGTATTTTCCTCATAGTAT 58.061 33.333 0.00 0.00 40.88 2.12
567 577 8.319057 ACACCTGATGTATTTTCCTCATAGTA 57.681 34.615 0.00 0.00 40.88 1.82
568 578 7.200434 ACACCTGATGTATTTTCCTCATAGT 57.800 36.000 0.00 0.00 40.88 2.12
569 579 7.042456 CGAACACCTGATGTATTTTCCTCATAG 60.042 40.741 0.00 0.00 42.31 2.23
570 580 6.761242 CGAACACCTGATGTATTTTCCTCATA 59.239 38.462 0.00 0.00 42.31 2.15
571 581 5.586243 CGAACACCTGATGTATTTTCCTCAT 59.414 40.000 0.00 0.00 42.31 2.90
572 582 4.935205 CGAACACCTGATGTATTTTCCTCA 59.065 41.667 0.00 0.00 42.31 3.86
573 583 4.201822 GCGAACACCTGATGTATTTTCCTC 60.202 45.833 0.00 0.00 42.31 3.71
574 584 3.689649 GCGAACACCTGATGTATTTTCCT 59.310 43.478 0.00 0.00 42.31 3.36
575 585 3.689649 AGCGAACACCTGATGTATTTTCC 59.310 43.478 0.00 0.00 42.31 3.13
576 586 4.946784 AGCGAACACCTGATGTATTTTC 57.053 40.909 0.00 0.00 42.31 2.29
577 587 5.242434 TGTAGCGAACACCTGATGTATTTT 58.758 37.500 0.00 0.00 42.31 1.82
578 588 4.827692 TGTAGCGAACACCTGATGTATTT 58.172 39.130 0.00 0.00 42.31 1.40
579 589 4.465632 TGTAGCGAACACCTGATGTATT 57.534 40.909 0.00 0.00 42.31 1.89
580 590 4.465632 TTGTAGCGAACACCTGATGTAT 57.534 40.909 0.00 0.00 42.31 2.29
581 591 3.945981 TTGTAGCGAACACCTGATGTA 57.054 42.857 0.00 0.00 42.31 2.29
582 592 2.831685 TTGTAGCGAACACCTGATGT 57.168 45.000 0.00 0.00 46.42 3.06
583 593 4.685169 ATTTTGTAGCGAACACCTGATG 57.315 40.909 0.00 0.00 38.00 3.07
584 594 6.811253 TTTATTTTGTAGCGAACACCTGAT 57.189 33.333 0.00 0.00 38.00 2.90
585 595 6.607689 CATTTATTTTGTAGCGAACACCTGA 58.392 36.000 0.00 0.00 38.00 3.86
586 596 5.286082 GCATTTATTTTGTAGCGAACACCTG 59.714 40.000 0.00 0.00 38.00 4.00
587 597 5.048364 TGCATTTATTTTGTAGCGAACACCT 60.048 36.000 0.00 0.00 38.00 4.00
588 598 5.157781 TGCATTTATTTTGTAGCGAACACC 58.842 37.500 0.00 0.00 38.00 4.16
589 599 6.143118 TGTTGCATTTATTTTGTAGCGAACAC 59.857 34.615 0.00 0.00 38.00 3.32
590 600 6.209361 TGTTGCATTTATTTTGTAGCGAACA 58.791 32.000 0.00 0.00 35.88 3.18
591 601 6.683090 TGTTGCATTTATTTTGTAGCGAAC 57.317 33.333 0.00 0.00 0.00 3.95
592 602 6.309980 CCATGTTGCATTTATTTTGTAGCGAA 59.690 34.615 0.00 0.00 0.00 4.70
593 603 5.804473 CCATGTTGCATTTATTTTGTAGCGA 59.196 36.000 0.00 0.00 0.00 4.93
594 604 5.804473 TCCATGTTGCATTTATTTTGTAGCG 59.196 36.000 0.00 0.00 0.00 4.26
595 605 7.117523 TGTTCCATGTTGCATTTATTTTGTAGC 59.882 33.333 0.00 0.00 0.00 3.58
596 606 8.531622 TGTTCCATGTTGCATTTATTTTGTAG 57.468 30.769 0.00 0.00 0.00 2.74
597 607 8.933807 CATGTTCCATGTTGCATTTATTTTGTA 58.066 29.630 0.00 0.00 0.00 2.41
598 608 7.444792 ACATGTTCCATGTTGCATTTATTTTGT 59.555 29.630 4.08 0.00 0.00 2.83
599 609 7.746916 CACATGTTCCATGTTGCATTTATTTTG 59.253 33.333 7.11 0.00 0.00 2.44
600 610 7.444792 ACACATGTTCCATGTTGCATTTATTTT 59.555 29.630 7.11 0.00 0.00 1.82
601 611 6.935771 ACACATGTTCCATGTTGCATTTATTT 59.064 30.769 7.11 0.00 0.00 1.40
602 612 6.369340 CACACATGTTCCATGTTGCATTTATT 59.631 34.615 7.11 0.00 0.00 1.40
603 613 5.870433 CACACATGTTCCATGTTGCATTTAT 59.130 36.000 7.11 0.00 0.00 1.40
604 614 5.228665 CACACATGTTCCATGTTGCATTTA 58.771 37.500 7.11 0.00 0.00 1.40
605 615 4.059511 CACACATGTTCCATGTTGCATTT 58.940 39.130 7.11 0.00 0.00 2.32
606 616 3.555377 CCACACATGTTCCATGTTGCATT 60.555 43.478 7.11 0.00 0.00 3.56
607 617 2.028839 CCACACATGTTCCATGTTGCAT 60.029 45.455 7.11 0.00 0.00 3.96
608 618 1.340568 CCACACATGTTCCATGTTGCA 59.659 47.619 7.11 0.00 0.00 4.08
609 619 1.612950 TCCACACATGTTCCATGTTGC 59.387 47.619 7.11 0.00 0.00 4.17
610 620 3.569277 TCTTCCACACATGTTCCATGTTG 59.431 43.478 7.11 8.99 0.00 3.33
611 621 3.831323 TCTTCCACACATGTTCCATGTT 58.169 40.909 7.11 0.00 0.00 2.71
612 622 3.507162 TCTTCCACACATGTTCCATGT 57.493 42.857 0.00 4.08 0.00 3.21
613 623 3.822735 AGTTCTTCCACACATGTTCCATG 59.177 43.478 0.00 2.77 0.00 3.66
614 624 4.104383 AGTTCTTCCACACATGTTCCAT 57.896 40.909 0.00 0.00 0.00 3.41
615 625 3.576078 AGTTCTTCCACACATGTTCCA 57.424 42.857 0.00 0.00 0.00 3.53
616 626 6.385649 TTTTAGTTCTTCCACACATGTTCC 57.614 37.500 0.00 0.00 0.00 3.62
617 627 8.871686 AAATTTTAGTTCTTCCACACATGTTC 57.128 30.769 0.00 0.00 0.00 3.18
618 628 9.097257 CAAAATTTTAGTTCTTCCACACATGTT 57.903 29.630 2.44 0.00 0.00 2.71
619 629 7.710475 CCAAAATTTTAGTTCTTCCACACATGT 59.290 33.333 2.44 0.00 0.00 3.21
620 630 7.171337 CCCAAAATTTTAGTTCTTCCACACATG 59.829 37.037 2.44 0.00 0.00 3.21
621 631 7.216494 CCCAAAATTTTAGTTCTTCCACACAT 58.784 34.615 2.44 0.00 0.00 3.21
622 632 6.407525 CCCCAAAATTTTAGTTCTTCCACACA 60.408 38.462 2.44 0.00 0.00 3.72
623 633 5.989168 CCCCAAAATTTTAGTTCTTCCACAC 59.011 40.000 2.44 0.00 0.00 3.82
624 634 5.071115 CCCCCAAAATTTTAGTTCTTCCACA 59.929 40.000 2.44 0.00 0.00 4.17
625 635 5.071250 ACCCCCAAAATTTTAGTTCTTCCAC 59.929 40.000 2.44 0.00 0.00 4.02
626 636 5.220521 ACCCCCAAAATTTTAGTTCTTCCA 58.779 37.500 2.44 0.00 0.00 3.53
627 637 5.818678 ACCCCCAAAATTTTAGTTCTTCC 57.181 39.130 2.44 0.00 0.00 3.46
628 638 5.995282 CCAACCCCCAAAATTTTAGTTCTTC 59.005 40.000 2.44 0.00 0.00 2.87
629 639 5.163141 CCCAACCCCCAAAATTTTAGTTCTT 60.163 40.000 2.44 0.00 0.00 2.52
630 640 4.349636 CCCAACCCCCAAAATTTTAGTTCT 59.650 41.667 2.44 0.00 0.00 3.01
631 641 4.505918 CCCCAACCCCCAAAATTTTAGTTC 60.506 45.833 2.44 0.00 0.00 3.01
632 642 3.396276 CCCCAACCCCCAAAATTTTAGTT 59.604 43.478 2.44 3.01 0.00 2.24
633 643 2.983192 CCCCAACCCCCAAAATTTTAGT 59.017 45.455 2.44 0.00 0.00 2.24
634 644 3.252351 TCCCCAACCCCCAAAATTTTAG 58.748 45.455 2.44 0.00 0.00 1.85
635 645 3.362372 TCCCCAACCCCCAAAATTTTA 57.638 42.857 2.44 0.00 0.00 1.52
636 646 2.214364 TCCCCAACCCCCAAAATTTT 57.786 45.000 0.00 0.00 0.00 1.82
637 647 1.991813 CATCCCCAACCCCCAAAATTT 59.008 47.619 0.00 0.00 0.00 1.82
638 648 1.667595 CATCCCCAACCCCCAAAATT 58.332 50.000 0.00 0.00 0.00 1.82
639 649 0.253113 CCATCCCCAACCCCCAAAAT 60.253 55.000 0.00 0.00 0.00 1.82
640 650 1.159664 CCATCCCCAACCCCCAAAA 59.840 57.895 0.00 0.00 0.00 2.44
641 651 2.865600 CCATCCCCAACCCCCAAA 59.134 61.111 0.00 0.00 0.00 3.28
642 652 3.280151 CCCATCCCCAACCCCCAA 61.280 66.667 0.00 0.00 0.00 4.12
646 656 4.074408 CACCCCCATCCCCAACCC 62.074 72.222 0.00 0.00 0.00 4.11
647 657 4.074408 CCACCCCCATCCCCAACC 62.074 72.222 0.00 0.00 0.00 3.77
648 658 4.074408 CCCACCCCCATCCCCAAC 62.074 72.222 0.00 0.00 0.00 3.77
652 662 2.962825 TAATCCCCCACCCCCATCCC 62.963 65.000 0.00 0.00 0.00 3.85
653 663 1.002242 TTAATCCCCCACCCCCATCC 61.002 60.000 0.00 0.00 0.00 3.51
654 664 0.938192 TTTAATCCCCCACCCCCATC 59.062 55.000 0.00 0.00 0.00 3.51
655 665 0.941207 CTTTAATCCCCCACCCCCAT 59.059 55.000 0.00 0.00 0.00 4.00
656 666 0.178798 TCTTTAATCCCCCACCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
657 667 1.012395 TTCTTTAATCCCCCACCCCC 58.988 55.000 0.00 0.00 0.00 5.40
658 668 2.932184 TTTCTTTAATCCCCCACCCC 57.068 50.000 0.00 0.00 0.00 4.95
659 669 4.079154 AGAGATTTCTTTAATCCCCCACCC 60.079 45.833 0.00 0.00 43.08 4.61
660 670 5.130705 AGAGATTTCTTTAATCCCCCACC 57.869 43.478 0.00 0.00 43.08 4.61
661 671 7.998964 TGATAAGAGATTTCTTTAATCCCCCAC 59.001 37.037 3.52 0.00 43.08 4.61
662 672 8.113114 TGATAAGAGATTTCTTTAATCCCCCA 57.887 34.615 3.52 0.00 43.08 4.96
663 673 8.440771 TCTGATAAGAGATTTCTTTAATCCCCC 58.559 37.037 3.52 0.00 43.08 5.40
682 692 7.649533 AATTGTTGGCTGATGAATCTGATAA 57.350 32.000 1.74 0.00 0.00 1.75
844 940 4.006989 TGGAACTATGTAATGGTGTGTGC 58.993 43.478 0.00 0.00 36.85 4.57
847 943 8.188139 GGTTAAATGGAACTATGTAATGGTGTG 58.812 37.037 0.00 0.00 36.85 3.82
848 944 7.891183 TGGTTAAATGGAACTATGTAATGGTGT 59.109 33.333 0.00 0.00 36.85 4.16
886 983 0.954452 GCTGTTGCCTGCTTAGTTGT 59.046 50.000 0.00 0.00 33.16 3.32
948 1046 1.279496 TGCCTTCCAGATGTACAGCT 58.721 50.000 8.07 8.07 0.00 4.24
982 1080 3.837146 ACCATGAGACTGACTGAATCACT 59.163 43.478 0.00 0.00 32.37 3.41
994 1092 1.305297 TCGCCCAGACCATGAGACT 60.305 57.895 0.00 0.00 0.00 3.24
1078 1176 0.754957 ACGAGGATGAGGAGGCTCTG 60.755 60.000 15.23 0.00 0.00 3.35
1126 1224 2.680370 GCCTTTCCCCGTCCCTGAT 61.680 63.158 0.00 0.00 0.00 2.90
1129 1227 4.677151 AGGCCTTTCCCCGTCCCT 62.677 66.667 0.00 0.00 34.51 4.20
1183 1281 1.806542 GCCGAGAAAGCTCACAATTCA 59.193 47.619 0.00 0.00 41.36 2.57
1246 1344 0.903236 GGTCAGACCCAAGGTACCTC 59.097 60.000 16.64 1.92 35.25 3.85
1323 1421 4.010349 CCAATCCAACTAACCACTCTTCC 58.990 47.826 0.00 0.00 0.00 3.46
1383 1481 2.792599 GCATGCTGCACTCTCTGC 59.207 61.111 11.37 6.98 44.26 4.26
1420 1552 9.977762 GCCAAAATCATCTTTTCATAAATCAAC 57.022 29.630 0.00 0.00 0.00 3.18
1555 1687 9.793259 ATCTAAAAGAATTCTAACAGTGGTTCA 57.207 29.630 8.75 0.00 38.45 3.18
1608 1740 3.887621 AGCTGTATAAGAAGTTGCCGA 57.112 42.857 0.00 0.00 0.00 5.54
1645 1785 4.494855 GCCGATCAGAGTTCTAACAATTGC 60.495 45.833 5.05 0.00 0.00 3.56
1657 1797 2.125912 GTGCGTGCCGATCAGAGT 60.126 61.111 0.00 0.00 0.00 3.24
1665 1805 2.101185 TTTTGTGTGTGCGTGCCG 59.899 55.556 0.00 0.00 0.00 5.69
1666 1806 0.457681 AAGTTTTGTGTGTGCGTGCC 60.458 50.000 0.00 0.00 0.00 5.01
1667 1807 2.181426 TAAGTTTTGTGTGTGCGTGC 57.819 45.000 0.00 0.00 0.00 5.34
1668 1808 5.479735 CAATTTAAGTTTTGTGTGTGCGTG 58.520 37.500 0.00 0.00 0.00 5.34
1669 1809 4.564769 CCAATTTAAGTTTTGTGTGTGCGT 59.435 37.500 0.00 0.00 0.00 5.24
1684 1837 2.778299 ACAGTCAGCGCTCCAATTTAA 58.222 42.857 7.13 0.00 0.00 1.52
1686 1839 2.472695 TACAGTCAGCGCTCCAATTT 57.527 45.000 7.13 0.00 0.00 1.82
1688 1841 2.472695 TTTACAGTCAGCGCTCCAAT 57.527 45.000 7.13 0.00 0.00 3.16
1695 1860 4.668576 ATTGTGTCATTTACAGTCAGCG 57.331 40.909 0.00 0.00 39.29 5.18
1712 1877 5.171339 AGTTAGCCTGAGATGTGAATTGT 57.829 39.130 0.00 0.00 0.00 2.71
1738 1903 6.148811 GGCGGCAGCTAAATAGTTTCATATTA 59.851 38.462 9.17 0.00 44.37 0.98
1739 1904 5.048713 GGCGGCAGCTAAATAGTTTCATATT 60.049 40.000 9.17 0.00 44.37 1.28
1740 1905 4.455877 GGCGGCAGCTAAATAGTTTCATAT 59.544 41.667 9.17 0.00 44.37 1.78
1741 1906 3.813166 GGCGGCAGCTAAATAGTTTCATA 59.187 43.478 9.17 0.00 44.37 2.15
1743 1908 2.014128 GGCGGCAGCTAAATAGTTTCA 58.986 47.619 9.17 0.00 44.37 2.69
1758 1924 0.313043 TATAGAGTGCTAACGGCGGC 59.687 55.000 13.24 5.64 45.43 6.53
1783 1949 7.801783 GGTAACAAAGCAGTATGTAACAAAGTC 59.198 37.037 0.00 0.00 39.31 3.01
1864 2030 5.059221 CGCGTGTTCATTTAATTTTGAGACC 59.941 40.000 0.00 0.00 0.00 3.85
1865 2031 5.849081 TCGCGTGTTCATTTAATTTTGAGAC 59.151 36.000 5.77 0.00 0.00 3.36
1866 2032 5.991568 TCGCGTGTTCATTTAATTTTGAGA 58.008 33.333 5.77 0.00 0.00 3.27
1867 2033 6.667981 TTCGCGTGTTCATTTAATTTTGAG 57.332 33.333 5.77 0.00 0.00 3.02
1868 2034 6.344312 CGTTTCGCGTGTTCATTTAATTTTGA 60.344 34.615 5.77 0.00 35.54 2.69
1869 2035 5.771673 CGTTTCGCGTGTTCATTTAATTTTG 59.228 36.000 5.77 0.00 35.54 2.44
1872 2038 3.359580 GCGTTTCGCGTGTTCATTTAATT 59.640 39.130 5.77 0.00 44.55 1.40
1875 2050 1.939969 GCGTTTCGCGTGTTCATTTA 58.060 45.000 5.77 0.00 44.55 1.40
1939 2120 6.576185 CCGGCTAGTAATGGTTTAGTTTAGA 58.424 40.000 0.00 0.00 0.00 2.10
1953 2134 3.261390 TCAAGGTTAAAGCCGGCTAGTAA 59.739 43.478 33.07 26.51 0.00 2.24
1958 2139 0.109723 TGTCAAGGTTAAAGCCGGCT 59.890 50.000 27.08 27.08 0.00 5.52
1975 2156 1.672356 GTGTGATGCGGCTTCCTGT 60.672 57.895 12.65 0.00 0.00 4.00
1994 2175 6.466812 TCTCTGAATTTCTTAGTGCATGTGA 58.533 36.000 0.00 0.00 0.00 3.58
2022 2203 9.269453 GTAGGGCACGAGTTTCTAATTAATTAT 57.731 33.333 8.34 0.00 0.00 1.28
2034 2215 2.367567 TCTTTGAGTAGGGCACGAGTTT 59.632 45.455 0.00 0.00 0.00 2.66
2041 2222 5.030147 TCTAATTCCTCTTTGAGTAGGGCA 58.970 41.667 0.00 0.00 33.40 5.36
2047 2228 4.699994 TCCCCTCTAATTCCTCTTTGAGT 58.300 43.478 0.00 0.00 0.00 3.41
2050 2231 5.608860 AGGTATCCCCTCTAATTCCTCTTTG 59.391 44.000 0.00 0.00 40.71 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.