>input_sequence_87264
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---------------------------------------------------------ATGGTCTGGGCGAGGGGTATACC
AGTCAGGGAACCTCCCCATCCTTCTCAGCAGCCTCGTGTAAGGAGACTCCGGCATCAGAGCCTCCTCATCCTCGTCGATC
TCTTCCTGCGTTTTCGGCAGCCCATCAGGGACGGGGAAAGGCCTCGGCTTCGCTGTTTGCCCCGGGGAGTTTGA------
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>chr5A_1_TraesCS5A01G402400
TTGGTTGATTGTTCT-TTTTGTTTAGGGTCTCGATGATCCGGATTTCGTGGAGAAAGAGAGACCGAGGGCACAGATACCA
GTCAAACCATTCAGCCCTGCTGATTGTGTGCTTGAATATCGGGCCGTGCCAACTACGAGGGAAGACTAAGTTAAGTAGGG
CGCTCAAGTGGAAGGCTATGGAATCCCTTTTGAACTTTCATGTGACTGAAGGAACATAG-TACTGTACAGTATGTTTTAG
ACCTTTAGTGTTAAGCTTGTCAGGCTGTAGGCTCAAGTATGTTCTGTT----GCTAAGACACCAAAAGGGAAAGGACGTT
TGGCTTGAGATG---TTAGTGGTTGCTCATCAGAATTGGATCCAGAGACAATCTGATTGGCTGTCTTTCAAATTCGAAAC
CACTTGCTGCTTCTGTTTAGATGTGAATGGATTTACAGGTCAAAGCGAGCACAAACCAAACAACCATGTCGCTTCCTTCA
AGTTTTACCAGCAGGCTGCAGGTTTTGGGATGGATGGATTGGCTTCCTAACAAAATTAGAGTACTCTCTTCAACTCACAC
TTGAAAGTTTAGATCATACTATGAGGAAAATACATCAGGTGTTCGCTACAAAATAAATGCAACATGGAACATGTGTGGAA
GAACTAAAATTTTGGGGGTTGGGGATGGGGGTGGGGGATTAAAGAAATCTCTTATCAGATTCATCAGCCAACAATT----
----------------------------------------------------AACACACACACACACACACACACACACA
CACAC--ACACAATAGTACTAGTAGTCAAGAACTCTATTCCCAAACACATATATACAGAGATACATTAGCAG--------
--------------------GTATCTGAATCTAAAGAGAAGAACTCGACACCACAAGAAGCACA-CACCATTACATAGTT
CCATTTAACCACTCAGCAAAAAACAACTAAGCAGGCAACAG-CAATCCAAGCTTCCATGCTCGATGCCAGGAGAACAGAG
CTTCAAGCTGTACATCTGGAAGGCAAGGCTGGTCCATGGAGTGATTCAGTCAGTCTCATGGTCTGGGCGAGGGGTATACC
AGTCAGGGAACCTCCCCATCCTTCTCAGCAGCCTCGTGTAAGGAGACTCCGGCATCAGAGCCTCCTCATCCTCGTCGATC
TCTTCCTGCGTTTTCGGCAGCCCATCAGGGACGGGGAAAGGCCTCGGCTTCGCTGTTTGCCCCGGGGAGTTTGATGGCGC
TGAATTGTGAGCTTTCTCGGCCATCTTCTTCCGTAGGTCTGACCGGTGGTGGATGCTGCTTATGAGGTACCTTGGGTCTG
ACCGCGAGTCCTTCACCATCCTTGAGATTTCTTCTTGCGGTAGCTCTTGCTGGGAAATGGGGAAGAGTGGTTAGTTGGAT
TGGATCGCCGCAAGTAGCACGCAAAGGTACTAAATATCTTGCAGAGAGTGCAGCATG-----------------------
-----------CTCATGATGAATTTGGTAATGTTGATTTATGAAAAGATGATTTTGGCTGCGGTGCCGGTGCATACCTCG
AGTTTGTTGAGTTCAAAATAGGCATCCCAGCAGCTGCAGCAATCATCGCCTTCAAGGGTCGTGCAATAATCTGTACCCAG
ATAAGATGAACCACTGTTAGAATTCTTTTAGATCCAATTAACACTGTTCAAATTCAGAGT--CGGCAACTTCTTATACAG
CTTA------ATCTGTTATGAAATGCAATTGTTAGAACTCTGATCGGCAC-------------GCACACACAAAACTTAA
ATT------------GGAGCGCTGACTGTAAATGACACAATTCACATCTCAGGCTAACTAATTAATATGAAAC-TATTTA
GCTGCCGCCGTTAGCACTCTATATATTTGACTTTGTTACATACTGCTTTGTTACCACCATGAAATTAGCACTCGAATTTA
CACCAAACCAAACAAGCTTTTAACAGTAAGGTCTCAAAA---------TTAAATGAACACGCGAAACGCTAAACAAGCAA
GCAACAGAACCGAAACCAGATCTAAGCC-AGAA-----GTCTAAACTAAACCATTACTAGCCGGCTTTAACCTTGACAGG
AAGCCGCATCACACTCACATGCACTAAGAAATTCAGAGAAAAATAATTAATTAGAAACTCGTGCCCTACTCAAAGAG--G
AATTAGAGG---------------GGATACCTGTGATGTGGTCCTTGGTGCGCTGGACGAGAGGCTTCTCCTGCTTGAAG
AACTCGTCGAGGATGCTGCGGCTGGAGCTGAAGGGCTCCCGCTTGGGGATCGAG
>chr5B_1
TTGCTTGTGTGTTGTATTTTGTTTAGGGTCTCGATGATCCGGATTTCGTGGAGAAAGAGAGAGCGAGGGCACAGATGCCA
GGCAAACCGTTCAGCCCTGCTGATTGTGTGCTTGAATATCGGGCTGTGCCAACCACC-GGGAAGACTAA--TAAGTAGGG
CGCTCGAGTGGAAGGCTATGGAATCCCTTTTGAGCTTTCATGTGACTGAAGGAACATGGTTACTGTACAGTGTGTTTTGG
ACCTTTAGTGTTAAGCTTGTCAGGCTGTAGGCTCAAGTATGTATGTCCTGTGGCTAAGACACCAAAAGGGAAAGGACGTT
TGGCTTGAGATGTTATTAGTGGTTGCTCATCAGAATTGGATCCAGAGACATC----------------------------
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----------------------------------------AAAGAAATCTC-TATCAGATTCATCAGCCAACAATTAACA
GCCAAACAGACACACACACACACACACACACACGCAAGAGACAGTAGTAGTAAACACACACACACACACACACACACACA
CACACACACACAATAGTACTAGTAGTCAAGAACTCTATTCCCAAACATATATATACAGAGATACATTAGCAGATATCATA
CAAAAACAGCAAAAACGGAGGTATCTGAATCTAAAGAGAAGAACTCGACACTACAAGAAACAAC-CACTATTACATAGTT
CCATTTATCCACTCAGCAAAAACCAACTAAGCAGGCAACAG-TAATCCAAGCTTCCATGCTTGGTGCCATGAG-ACAGAG
CTTCAGGCTGTACATCTGGAAGGCAAGGCTGGTCCATGGTGTGATTCAGTCGGTCTCATGGTCCGGGCGAGGGGTATACC
AGTCGGGGAACCTCCCCATTCTTCTCAGCAGCCTCGTGTAAGGAGACTCCGGCATGAGAGCCTCCTCATCCTCGTCGATC
TCTTGCTGCGTTTTCGGCAGCCCGTCGGGGACGGGGAAGGGCCTCGGCTTCGCTGTTTGCCGCGGGGAGTTTGATGGCGC
CGAATTGTGAGCTTTCTCGGCCATCTTCTTCCGTAGGTCCGACCGGTGGTGTATGCTGCTTATAAGGTACCTTGGGTCTG
ACCGCGAGTCCTTCACCATCCTCGAGATTTCTTCTTGCGGTAGCTCTTGCTGGGAAATGGAGAAGAGTGGTTAGTTGGAT
TGGATCGCCGCAAGTAGCACGCAAAGGTACTAAGTACTCCCTCCGTCCCATAATATAAGAACGTTTTTGACACTACTAGT
AGTGTCAAAAACTCATGATGAATTTGGTAACTTTGATTTATGAAAAGATGATTTTAGCCG------CGGCGCATACCTCG
AGTTTGTTGAGTTCAAAATAGGCATCCCAGCAGCTGCAGCAATCGTCGCCTTCAAGGGTCGTGCAATAATCTGTACCCAG
ATAAGAAGACCCACTGTTAGAATTCTTTTAGATCCAACTAACACTGTTCAAATTCAGAGACGCGGTAATTTCTTATACAG
TAGCTTAGAGATCTGTTATGAAATACAATTGCTAAACCTCTGATTTATGCGGTCGAACAGGCTCGCTAAATTAATCC---
--------------------------------------------------------------------GAAAC-TATTTA
GCTCCCGCCATTAACACTCTACATATTTCA---------------CTTTGTTACCACCATGAAACTGGCACTCGAATTTA
CACCAAA-CAAACAAGCTTTCAACAGTAA------AAGA---------TAAAATGAACACGCGAAACACTAAACAAGCAA
GCTACAGAACCGAAACCAGATCTAAGCTAAGAA-----GCCTGAACAAAACCACCACTGGTCGGCTAAGAACACGTACAG
-------------------------------------------TAATAAATTAGGAACTCTGGGTAGTACTGGAAGAGAG
AATTAGAGAAGAAGTATCATAGCAGGGTACCTGTGATCTGGTCCTTGGTGCGCTGGACGAGAGGCTTCTCCTGCTTGAAG
AACTCGTCGAGGATGCTGCGGCTGGAGCTGAAGGGCTCCCGCTTGGGGATCGAG
>chr5D_16
----------------TTTTCTTTAGGGTCTCGATGATCCGGATTACGTGGAGAAAGAGAGAGCGAGGGCACAGATGACA
ATTAGACCATTCAGCCCTGATGATTGTGTGCCTGAATATCGGGCTGTGCCAACTACT-GGGAAGAGTAAGTAGGGAGCC-
-------------GGCTAAGGAATCCCTTTTGAGCTTTCATGTGACTGAAGGAACATAG-TACTGTACAGTGTGTTTTAG
ACCTTTAGTGTTAAGCTTGTCAGGCTCTAGGCTCAAGTATGTCCTCTT----GCTAAGACACCAAAAGGGAAAGGACGTT
TGGCTTGAGATGTTATTAGTGGTTGCTCATCAGAATTGGATCCAGAGACATC----------------------------
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-----------------------------------------AAGAAATCTC-TATCAGATTCATCAGCCAACAATTAATA
GCCAAACAGACACACACACACAGACAAT--------------AGTAGTAGTCAACACATACACAA---------------
--------------AGTACTAGCAGTCAAGAACTCTATTCCCAAACATATATATACAGATATACA-TAGCAGATATCATA
CGAAAACGGCAAAAAGGGTGTTATCTGAATCTAAAGCGAAGAACTAAACACCACAAAAACATACGCACCATTACATAGTT
CCATTTATCCACTCAGCAAAAACCAACTAAGCAGGCAACAGGCAATCCAAGGTTCCATGCTCGATGCCAGGAGAACAGAG
CTTCAGGCTGTACATCTGGAAGGCAAGGCTGGTTCATGGCGTGATTCAGTCGGTCTCATGGTCTGGGCGAGGGGTATACC
AGTCGGGAAACCTCCCCATCCTTCTGAGCAGCCTCGTGTAAGGAGACTCCGGCATGAGGGCCTCCTCATCCTCGTCGATC
TCTTCCTGCGTTTTCGGCAGCCCGTCGGGGACGGGGAAAGGCCTCGGCTTCGCTGTTTGCCCCGGGGAGTTTGATGGCGC
CGAATTGTGAGCTTTCTCGGCCATCTTCTTCCGTAGGTCTGACCGGTGGTGGATGCTGCTTATAAGGTACCTCGGGTCTG
ACCGCGAGTCCTTCACCATCCTTGAAATTTCTTCTTGCGGTAGCTCTTGCTGGGAAATGGAGAAGAGTGGTTAGTTGGAT
TGGATTGTCGCAAGC----------------------------GAGAGTGCAGCATG-----------------------
-----------CTCGTGATGAATTTGGTAACTTTGATTTATGAAAAGATGATTTTGGCCGCGGTGCCGGTGCATACCTCG
AGTTTGTTGAGTTCAAAATAGGCATCCCAGCAGCTGCAGCAATCATCACCCTCAAGGGTCGTGCAATAATCTGTACCCAG
ATAAGAAGAACCACTGTTAGAATTCTTTCAGATCCAATTAACACTGTTCAAATCCCGAGC--CAGAAACTTCGTATGCTT
AGAA------ATATGTTATGAAGAACAATTGTTAGACCTCTGATTTATGCGGCCGATTTGGGTGCACACACACGAACTTA
CTTACTCAGTAAACCGGAGTGCTGACTGTAAATGACCCACTTCACATCTCAGGCTAGTCTATCTGAACTAGTTGTATTTA
GCTCGCGAA--------------------A---------------CTTTGTAACCACTCTGCATTTAGCACTCGAATTTA
CACCAAACCAAGCAAGCTTTCAACAGTAT------AAGGTCTCAAAATTAAACGGAACACGCGGAAAACTAAACAAACAA
ACAACAGAACCGAAACCAGATCTGAGCTAGTAGTACATGCCTAAACTAAACCACTACTGGCCGGCTTTAACCTTGGCAGG
AAGCCGCATCACACCCACACGCACTAAAAAATTACAGAAAAAGG--TTAATCAGGAACTCGAGCCCTGCTGAAAGAG--G
AATTAGAGGGGAT-TATCATAGCAGGATACCTGTGATGTGGTCCTTGGTGCGCTGGACGAGAGGCTTCTCCTGCTTGAAG
AACTCGTCGAGGATGCTGCGGCTGGAGCTGAAGGGCTCCCGCTTCGGGATCGAG
>SNPs
---S---SS----S------------------------------------------------S-------------S---
--------------------------------------------S-----------SS----------------------
-----S---------------------------S-------------------------------------S--------
------------------------------------------S--S----------------------------------
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S----------------------------
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-----------------------------------------------S--------------------------------
-----------------------------------------------------------S--SS----------------
-------S--------------S---------------------------------------------------------
-----S---------------------------------S-----------S----------------------------
----S--------------------------------------------------S------------------------
-----------------------S--S-----------------------------------------------------
S--------------------------------------------------------------S----------------
------------------------------------------------------------S-------------------
---------------------------------S--SSSSSSS-------------------------------------
------------------------------SS--------------------------S---------------------
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------S----------------------------------------------------S-----S--------------
SSS---------------------S-----------S-------SSSSS---------------------------S-S-
S------------------S----------------S--S----------------SSSS--SSSS-S------------
---S-----S---S-------S------S-SSSSSSSSSSSSSSS-----------------------------------
--------------------S--------SSSSSS--S-----------S-----------------S------------
---------------------------S-----------S-------------S----S----------------S----
--------------S----S-------S-----SSSSS----S-----------S------S-----S--S---------
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>forward_944
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--------------------------------------------TCGACACCACAAGAAGCACA----------------
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>reverse_2139
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----------------------------------------------------------AGCCGGCTTTAACCTTGACA--
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