Multiple sequence alignment - TraesCS5A01G400700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G400700 chr5A 100.000 2412 0 0 1 2412 593393937 593396348 0.000000e+00 4455.0
1 TraesCS5A01G400700 chr5B 86.945 2252 157 63 210 2411 580931575 580933739 0.000000e+00 2403.0
2 TraesCS5A01G400700 chr5B 91.304 46 4 0 139 184 194207394 194207349 2.000000e-06 63.9
3 TraesCS5A01G400700 chr5D 87.992 1474 95 32 982 2411 474139189 474140624 0.000000e+00 1666.0
4 TraesCS5A01G400700 chr5D 88.409 1320 99 29 209 1520 473938813 473940086 0.000000e+00 1541.0
5 TraesCS5A01G400700 chr5D 89.708 651 29 15 297 938 474138225 474138846 0.000000e+00 797.0
6 TraesCS5A01G400700 chr5D 92.135 178 10 1 1343 1520 473941113 473941286 5.150000e-62 248.0
7 TraesCS5A01G400700 chr5D 94.444 126 6 1 1206 1331 473941004 473941128 2.450000e-45 193.0
8 TraesCS5A01G400700 chr1A 82.456 114 18 2 6 118 554908607 554908495 5.490000e-17 99.0
9 TraesCS5A01G400700 chr7A 78.358 134 27 1 1 132 174926974 174927107 4.270000e-13 86.1
10 TraesCS5A01G400700 chr7A 89.796 49 3 2 40 87 694135078 694135125 7.200000e-06 62.1
11 TraesCS5A01G400700 chr7A 91.111 45 4 0 141 185 706302034 706302078 7.200000e-06 62.1
12 TraesCS5A01G400700 chr7A 91.111 45 4 0 140 184 720350824 720350868 7.200000e-06 62.1
13 TraesCS5A01G400700 chr4A 80.734 109 19 2 25 131 681470470 681470578 1.540000e-12 84.2
14 TraesCS5A01G400700 chr4A 93.023 43 3 0 43 85 492938210 492938252 2.000000e-06 63.9
15 TraesCS5A01G400700 chr2A 84.524 84 13 0 25 108 103814609 103814692 1.540000e-12 84.2
16 TraesCS5A01G400700 chr2A 93.617 47 3 0 140 186 741380337 741380291 1.200000e-08 71.3
17 TraesCS5A01G400700 chr2A 93.182 44 2 1 43 86 719521221 719521263 2.000000e-06 63.9
18 TraesCS5A01G400700 chr7D 91.111 45 4 0 140 184 618373381 618373337 7.200000e-06 62.1
19 TraesCS5A01G400700 chr7D 91.111 45 4 0 140 184 633385796 633385840 7.200000e-06 62.1
20 TraesCS5A01G400700 chr7D 91.304 46 1 3 2325 2370 384230872 384230830 2.590000e-05 60.2
21 TraesCS5A01G400700 chr6D 91.111 45 4 0 140 184 928082 928126 7.200000e-06 62.1
22 TraesCS5A01G400700 chr4D 81.944 72 13 0 32 103 298116263 298116192 7.200000e-06 62.1
23 TraesCS5A01G400700 chr2D 91.111 45 4 0 140 184 54007748 54007704 7.200000e-06 62.1
24 TraesCS5A01G400700 chr1D 91.111 45 4 0 140 184 457162521 457162565 7.200000e-06 62.1
25 TraesCS5A01G400700 chr1B 87.755 49 6 0 24 72 265291215 265291167 9.310000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G400700 chr5A 593393937 593396348 2411 False 4455.000000 4455 100.000000 1 2412 1 chr5A.!!$F1 2411
1 TraesCS5A01G400700 chr5B 580931575 580933739 2164 False 2403.000000 2403 86.945000 210 2411 1 chr5B.!!$F1 2201
2 TraesCS5A01G400700 chr5D 474138225 474140624 2399 False 1231.500000 1666 88.850000 297 2411 2 chr5D.!!$F2 2114
3 TraesCS5A01G400700 chr5D 473938813 473941286 2473 False 660.666667 1541 91.662667 209 1520 3 chr5D.!!$F1 1311

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 949 0.103937 GATCACAGGGCGAAGAGAGG 59.896 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 3877 0.526662 AGACAACGATGAGGACGGAC 59.473 55.0 0.0 0.0 34.93 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.388841 GGGCTCGGTGAGGAAAGA 58.611 61.111 0.00 0.00 0.00 2.52
18 19 1.219393 GGGCTCGGTGAGGAAAGAG 59.781 63.158 0.00 0.00 0.00 2.85
19 20 1.258445 GGGCTCGGTGAGGAAAGAGA 61.258 60.000 0.00 0.00 32.84 3.10
20 21 0.174617 GGCTCGGTGAGGAAAGAGAG 59.825 60.000 0.00 0.00 32.84 3.20
21 22 0.892063 GCTCGGTGAGGAAAGAGAGT 59.108 55.000 0.00 0.00 32.84 3.24
22 23 1.403514 GCTCGGTGAGGAAAGAGAGTG 60.404 57.143 0.00 0.00 32.84 3.51
23 24 2.163509 CTCGGTGAGGAAAGAGAGTGA 58.836 52.381 0.00 0.00 32.84 3.41
24 25 2.163412 CTCGGTGAGGAAAGAGAGTGAG 59.837 54.545 0.00 0.00 32.84 3.51
25 26 1.403514 CGGTGAGGAAAGAGAGTGAGC 60.404 57.143 0.00 0.00 0.00 4.26
26 27 1.403514 GGTGAGGAAAGAGAGTGAGCG 60.404 57.143 0.00 0.00 0.00 5.03
27 28 0.244994 TGAGGAAAGAGAGTGAGCGC 59.755 55.000 0.00 0.00 0.00 5.92
28 29 0.800300 GAGGAAAGAGAGTGAGCGCG 60.800 60.000 0.00 0.00 0.00 6.86
29 30 1.080434 GGAAAGAGAGTGAGCGCGT 60.080 57.895 8.43 0.00 0.00 6.01
30 31 1.347817 GGAAAGAGAGTGAGCGCGTG 61.348 60.000 8.43 0.00 0.00 5.34
31 32 1.950098 GAAAGAGAGTGAGCGCGTGC 61.950 60.000 14.39 14.39 43.24 5.34
41 42 2.128054 GCGCGTGCGTTCGTTTTA 60.128 55.556 16.27 0.00 42.09 1.52
42 43 1.508332 GCGCGTGCGTTCGTTTTAT 60.508 52.632 16.27 0.00 42.09 1.40
43 44 1.707463 GCGCGTGCGTTCGTTTTATG 61.707 55.000 16.27 0.00 42.09 1.90
44 45 0.449831 CGCGTGCGTTCGTTTTATGT 60.450 50.000 6.00 0.00 34.35 2.29
45 46 1.235695 GCGTGCGTTCGTTTTATGTC 58.764 50.000 3.76 0.00 0.00 3.06
46 47 1.860709 CGTGCGTTCGTTTTATGTCC 58.139 50.000 0.00 0.00 0.00 4.02
47 48 1.780636 CGTGCGTTCGTTTTATGTCCG 60.781 52.381 0.00 0.00 0.00 4.79
48 49 0.164217 TGCGTTCGTTTTATGTCCGC 59.836 50.000 0.00 0.00 40.02 5.54
49 50 0.850391 GCGTTCGTTTTATGTCCGCG 60.850 55.000 0.00 0.00 0.00 6.46
50 51 0.850391 CGTTCGTTTTATGTCCGCGC 60.850 55.000 0.00 0.00 0.00 6.86
51 52 0.519792 GTTCGTTTTATGTCCGCGCC 60.520 55.000 0.00 0.00 0.00 6.53
52 53 1.957711 TTCGTTTTATGTCCGCGCCG 61.958 55.000 0.00 0.00 0.00 6.46
53 54 2.446253 CGTTTTATGTCCGCGCCGA 61.446 57.895 0.00 0.00 0.00 5.54
54 55 1.059838 GTTTTATGTCCGCGCCGAC 59.940 57.895 20.04 20.04 0.00 4.79
55 56 2.446253 TTTTATGTCCGCGCCGACG 61.446 57.895 21.08 0.00 44.07 5.12
65 66 2.395690 CGCCGACGCAAATCAGAC 59.604 61.111 0.00 0.00 34.03 3.51
66 67 2.094659 CGCCGACGCAAATCAGACT 61.095 57.895 0.00 0.00 34.03 3.24
67 68 1.710339 GCCGACGCAAATCAGACTC 59.290 57.895 0.00 0.00 34.03 3.36
68 69 1.014044 GCCGACGCAAATCAGACTCA 61.014 55.000 0.00 0.00 34.03 3.41
69 70 1.428448 CCGACGCAAATCAGACTCAA 58.572 50.000 0.00 0.00 0.00 3.02
70 71 1.798223 CCGACGCAAATCAGACTCAAA 59.202 47.619 0.00 0.00 0.00 2.69
71 72 2.223144 CCGACGCAAATCAGACTCAAAA 59.777 45.455 0.00 0.00 0.00 2.44
72 73 3.303725 CCGACGCAAATCAGACTCAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
73 74 4.466828 CGACGCAAATCAGACTCAAAAAT 58.533 39.130 0.00 0.00 0.00 1.82
74 75 5.390461 CCGACGCAAATCAGACTCAAAAATA 60.390 40.000 0.00 0.00 0.00 1.40
75 76 5.729883 CGACGCAAATCAGACTCAAAAATAG 59.270 40.000 0.00 0.00 0.00 1.73
76 77 6.401047 CGACGCAAATCAGACTCAAAAATAGA 60.401 38.462 0.00 0.00 0.00 1.98
77 78 6.603095 ACGCAAATCAGACTCAAAAATAGAC 58.397 36.000 0.00 0.00 0.00 2.59
78 79 6.024049 CGCAAATCAGACTCAAAAATAGACC 58.976 40.000 0.00 0.00 0.00 3.85
79 80 6.348458 CGCAAATCAGACTCAAAAATAGACCA 60.348 38.462 0.00 0.00 0.00 4.02
80 81 7.025963 GCAAATCAGACTCAAAAATAGACCAG 58.974 38.462 0.00 0.00 0.00 4.00
81 82 7.094634 GCAAATCAGACTCAAAAATAGACCAGA 60.095 37.037 0.00 0.00 0.00 3.86
82 83 8.786898 CAAATCAGACTCAAAAATAGACCAGAA 58.213 33.333 0.00 0.00 0.00 3.02
83 84 8.924511 AATCAGACTCAAAAATAGACCAGAAA 57.075 30.769 0.00 0.00 0.00 2.52
84 85 9.525826 AATCAGACTCAAAAATAGACCAGAAAT 57.474 29.630 0.00 0.00 0.00 2.17
85 86 8.327941 TCAGACTCAAAAATAGACCAGAAATG 57.672 34.615 0.00 0.00 0.00 2.32
86 87 8.156820 TCAGACTCAAAAATAGACCAGAAATGA 58.843 33.333 0.00 0.00 0.00 2.57
87 88 8.786898 CAGACTCAAAAATAGACCAGAAATGAA 58.213 33.333 0.00 0.00 0.00 2.57
88 89 9.525826 AGACTCAAAAATAGACCAGAAATGAAT 57.474 29.630 0.00 0.00 0.00 2.57
90 91 9.918630 ACTCAAAAATAGACCAGAAATGAATTG 57.081 29.630 0.00 0.00 0.00 2.32
91 92 9.362539 CTCAAAAATAGACCAGAAATGAATTGG 57.637 33.333 0.00 0.00 37.98 3.16
92 93 7.818930 TCAAAAATAGACCAGAAATGAATTGGC 59.181 33.333 0.00 0.00 35.35 4.52
93 94 6.855763 AAATAGACCAGAAATGAATTGGCA 57.144 33.333 0.00 0.00 35.35 4.92
94 95 6.461110 AATAGACCAGAAATGAATTGGCAG 57.539 37.500 0.00 0.00 35.35 4.85
95 96 4.038271 AGACCAGAAATGAATTGGCAGA 57.962 40.909 0.00 0.00 35.35 4.26
96 97 3.760684 AGACCAGAAATGAATTGGCAGAC 59.239 43.478 0.00 0.00 35.35 3.51
97 98 2.489329 ACCAGAAATGAATTGGCAGACG 59.511 45.455 0.00 0.00 35.35 4.18
98 99 2.749076 CCAGAAATGAATTGGCAGACGA 59.251 45.455 0.00 0.00 0.00 4.20
99 100 3.191162 CCAGAAATGAATTGGCAGACGAA 59.809 43.478 0.00 0.00 0.00 3.85
100 101 4.161333 CAGAAATGAATTGGCAGACGAAC 58.839 43.478 0.00 0.00 0.00 3.95
101 102 2.900122 AATGAATTGGCAGACGAACG 57.100 45.000 0.00 0.00 0.00 3.95
102 103 2.093306 ATGAATTGGCAGACGAACGA 57.907 45.000 0.14 0.00 0.00 3.85
103 104 1.872388 TGAATTGGCAGACGAACGAA 58.128 45.000 0.14 0.00 0.00 3.85
104 105 2.214347 TGAATTGGCAGACGAACGAAA 58.786 42.857 0.14 0.00 0.00 3.46
105 106 2.223144 TGAATTGGCAGACGAACGAAAG 59.777 45.455 0.14 0.00 0.00 2.62
106 107 0.517316 ATTGGCAGACGAACGAAAGC 59.483 50.000 0.14 1.60 0.00 3.51
107 108 1.827315 TTGGCAGACGAACGAAAGCG 61.827 55.000 0.14 0.00 44.79 4.68
108 109 2.019951 GGCAGACGAACGAAAGCGA 61.020 57.895 0.14 0.00 41.64 4.93
109 110 1.554042 GGCAGACGAACGAAAGCGAA 61.554 55.000 0.14 0.00 41.64 4.70
110 111 0.449022 GCAGACGAACGAAAGCGAAC 60.449 55.000 0.14 0.00 41.64 3.95
111 112 0.850217 CAGACGAACGAAAGCGAACA 59.150 50.000 0.14 0.00 41.64 3.18
112 113 0.850856 AGACGAACGAAAGCGAACAC 59.149 50.000 0.14 0.00 41.64 3.32
113 114 0.446784 GACGAACGAAAGCGAACACG 60.447 55.000 0.14 0.00 41.64 4.49
114 115 1.141591 ACGAACGAAAGCGAACACGT 61.142 50.000 0.14 0.00 41.64 4.49
115 116 0.713718 CGAACGAAAGCGAACACGTG 60.714 55.000 15.48 15.48 41.64 4.49
116 117 0.299597 GAACGAAAGCGAACACGTGT 59.700 50.000 17.22 17.22 41.64 4.49
117 118 0.299597 AACGAAAGCGAACACGTGTC 59.700 50.000 23.61 14.20 41.64 3.67
118 119 1.200839 CGAAAGCGAACACGTGTCC 59.799 57.895 23.61 8.69 40.82 4.02
119 120 1.200839 GAAAGCGAACACGTGTCCG 59.799 57.895 23.76 23.76 40.83 4.79
120 121 2.743871 GAAAGCGAACACGTGTCCGC 62.744 60.000 39.82 39.82 47.00 5.54
122 123 3.335534 GCGAACACGTGTCCGCTT 61.336 61.111 39.35 17.33 43.75 4.68
123 124 2.544359 CGAACACGTGTCCGCTTG 59.456 61.111 23.61 6.29 37.70 4.01
124 125 1.947146 CGAACACGTGTCCGCTTGA 60.947 57.895 23.61 0.00 37.70 3.02
125 126 1.853319 GAACACGTGTCCGCTTGAG 59.147 57.895 23.61 0.00 37.70 3.02
126 127 0.874607 GAACACGTGTCCGCTTGAGT 60.875 55.000 23.61 1.90 37.70 3.41
127 128 0.874607 AACACGTGTCCGCTTGAGTC 60.875 55.000 23.61 0.00 37.70 3.36
128 129 1.299850 CACGTGTCCGCTTGAGTCA 60.300 57.895 7.58 0.00 37.70 3.41
129 130 1.007271 ACGTGTCCGCTTGAGTCAG 60.007 57.895 0.00 0.00 37.70 3.51
130 131 2.375766 CGTGTCCGCTTGAGTCAGC 61.376 63.158 0.00 0.00 36.33 4.26
136 137 3.867771 GCTTGAGTCAGCGTGGAG 58.132 61.111 0.00 0.00 0.00 3.86
137 138 1.005630 GCTTGAGTCAGCGTGGAGT 60.006 57.895 0.00 0.00 0.00 3.85
138 139 0.601311 GCTTGAGTCAGCGTGGAGTT 60.601 55.000 0.00 0.00 0.00 3.01
139 140 1.143305 CTTGAGTCAGCGTGGAGTTG 58.857 55.000 0.00 0.00 0.00 3.16
140 141 0.249868 TTGAGTCAGCGTGGAGTTGG 60.250 55.000 0.00 0.00 0.00 3.77
141 142 1.112916 TGAGTCAGCGTGGAGTTGGA 61.113 55.000 0.00 0.00 0.00 3.53
142 143 0.667792 GAGTCAGCGTGGAGTTGGAC 60.668 60.000 0.00 0.00 0.00 4.02
143 144 2.022129 GTCAGCGTGGAGTTGGACG 61.022 63.158 0.00 0.00 38.63 4.79
144 145 2.738521 CAGCGTGGAGTTGGACGG 60.739 66.667 0.00 0.00 36.09 4.79
145 146 4.681978 AGCGTGGAGTTGGACGGC 62.682 66.667 0.00 0.00 36.09 5.68
162 163 3.192922 CCGCGGACGAAATGGGTC 61.193 66.667 24.07 0.00 43.93 4.46
163 164 3.550992 CGCGGACGAAATGGGTCG 61.551 66.667 0.00 0.00 46.54 4.79
164 165 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
165 166 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
166 167 2.822701 GGACGAAATGGGTCGCCC 60.823 66.667 7.87 7.87 45.00 6.13
179 180 2.995283 GGTCGCCCCATTAAAACTACT 58.005 47.619 0.00 0.00 0.00 2.57
180 181 2.941064 GGTCGCCCCATTAAAACTACTC 59.059 50.000 0.00 0.00 0.00 2.59
181 182 3.370209 GGTCGCCCCATTAAAACTACTCT 60.370 47.826 0.00 0.00 0.00 3.24
182 183 4.141869 GGTCGCCCCATTAAAACTACTCTA 60.142 45.833 0.00 0.00 0.00 2.43
183 184 5.422145 GTCGCCCCATTAAAACTACTCTAA 58.578 41.667 0.00 0.00 0.00 2.10
184 185 5.292834 GTCGCCCCATTAAAACTACTCTAAC 59.707 44.000 0.00 0.00 0.00 2.34
185 186 4.573607 CGCCCCATTAAAACTACTCTAACC 59.426 45.833 0.00 0.00 0.00 2.85
186 187 5.628433 CGCCCCATTAAAACTACTCTAACCT 60.628 44.000 0.00 0.00 0.00 3.50
187 188 5.821470 GCCCCATTAAAACTACTCTAACCTC 59.179 44.000 0.00 0.00 0.00 3.85
188 189 6.352823 GCCCCATTAAAACTACTCTAACCTCT 60.353 42.308 0.00 0.00 0.00 3.69
189 190 7.048512 CCCCATTAAAACTACTCTAACCTCTG 58.951 42.308 0.00 0.00 0.00 3.35
190 191 7.093024 CCCCATTAAAACTACTCTAACCTCTGA 60.093 40.741 0.00 0.00 0.00 3.27
191 192 8.487028 CCCATTAAAACTACTCTAACCTCTGAT 58.513 37.037 0.00 0.00 0.00 2.90
192 193 9.892130 CCATTAAAACTACTCTAACCTCTGATT 57.108 33.333 0.00 0.00 0.00 2.57
196 197 8.535690 AAAACTACTCTAACCTCTGATTTTCG 57.464 34.615 0.00 0.00 0.00 3.46
197 198 7.463961 AACTACTCTAACCTCTGATTTTCGA 57.536 36.000 0.00 0.00 0.00 3.71
198 199 7.463961 ACTACTCTAACCTCTGATTTTCGAA 57.536 36.000 0.00 0.00 0.00 3.71
199 200 7.540299 ACTACTCTAACCTCTGATTTTCGAAG 58.460 38.462 0.00 0.00 0.00 3.79
200 201 6.591750 ACTCTAACCTCTGATTTTCGAAGA 57.408 37.500 0.00 0.00 0.00 2.87
201 202 6.391537 ACTCTAACCTCTGATTTTCGAAGAC 58.608 40.000 0.00 0.00 34.32 3.01
202 203 5.721232 TCTAACCTCTGATTTTCGAAGACC 58.279 41.667 0.00 0.00 34.32 3.85
203 204 4.351874 AACCTCTGATTTTCGAAGACCA 57.648 40.909 0.00 0.00 34.32 4.02
204 205 3.665190 ACCTCTGATTTTCGAAGACCAC 58.335 45.455 0.00 0.00 34.32 4.16
205 206 2.668457 CCTCTGATTTTCGAAGACCACG 59.332 50.000 0.00 0.00 34.32 4.94
206 207 3.575630 CTCTGATTTTCGAAGACCACGA 58.424 45.455 0.00 0.00 34.32 4.35
207 208 4.177026 CTCTGATTTTCGAAGACCACGAT 58.823 43.478 0.00 0.00 39.45 3.73
253 254 2.301296 CGGCCTAGGAATGATGACTGAT 59.699 50.000 14.75 0.00 0.00 2.90
254 255 3.616076 CGGCCTAGGAATGATGACTGATC 60.616 52.174 14.75 0.00 0.00 2.92
275 276 2.097466 CAGCACCAATTACCGAATGACC 59.903 50.000 0.00 0.00 0.00 4.02
277 278 1.668751 CACCAATTACCGAATGACCCG 59.331 52.381 0.00 0.00 0.00 5.28
281 282 2.116827 ATTACCGAATGACCCGCAAA 57.883 45.000 0.00 0.00 0.00 3.68
282 283 1.893544 TTACCGAATGACCCGCAAAA 58.106 45.000 0.00 0.00 0.00 2.44
283 284 2.116827 TACCGAATGACCCGCAAAAT 57.883 45.000 0.00 0.00 0.00 1.82
285 286 1.616374 ACCGAATGACCCGCAAAATTT 59.384 42.857 0.00 0.00 0.00 1.82
287 288 2.411409 CCGAATGACCCGCAAAATTTTG 59.589 45.455 23.74 23.74 41.03 2.44
289 290 3.492756 CGAATGACCCGCAAAATTTTGTT 59.507 39.130 27.13 14.53 40.24 2.83
290 291 4.375908 CGAATGACCCGCAAAATTTTGTTC 60.376 41.667 27.13 19.79 40.24 3.18
291 292 3.810310 TGACCCGCAAAATTTTGTTCT 57.190 38.095 27.13 11.22 40.24 3.01
292 293 4.130286 TGACCCGCAAAATTTTGTTCTT 57.870 36.364 27.13 13.05 40.24 2.52
293 294 5.263968 TGACCCGCAAAATTTTGTTCTTA 57.736 34.783 27.13 10.92 40.24 2.10
294 295 5.044558 TGACCCGCAAAATTTTGTTCTTAC 58.955 37.500 27.13 16.47 40.24 2.34
302 303 8.480853 CGCAAAATTTTGTTCTTACCGATTTTA 58.519 29.630 27.13 0.00 40.24 1.52
328 329 5.240183 AGTGGACACTTCATCATGTTTTCAG 59.760 40.000 0.00 0.00 38.83 3.02
335 336 6.805271 CACTTCATCATGTTTTCAGGTGATTC 59.195 38.462 0.00 0.00 30.08 2.52
376 377 1.010419 ACGAATAACCGCACACGTCC 61.010 55.000 0.00 0.00 37.70 4.79
377 378 0.734942 CGAATAACCGCACACGTCCT 60.735 55.000 0.00 0.00 37.70 3.85
378 379 0.997196 GAATAACCGCACACGTCCTC 59.003 55.000 0.00 0.00 37.70 3.71
379 380 0.390735 AATAACCGCACACGTCCTCC 60.391 55.000 0.00 0.00 37.70 4.30
380 381 1.537814 ATAACCGCACACGTCCTCCA 61.538 55.000 0.00 0.00 37.70 3.86
381 382 2.149803 TAACCGCACACGTCCTCCAG 62.150 60.000 0.00 0.00 37.70 3.86
382 383 3.991051 CCGCACACGTCCTCCAGT 61.991 66.667 0.00 0.00 37.70 4.00
383 384 2.430921 CGCACACGTCCTCCAGTC 60.431 66.667 0.00 0.00 33.53 3.51
416 417 3.883489 GCCTCTAATCCAACGGCTTAATT 59.117 43.478 0.00 0.00 37.76 1.40
460 461 2.431942 CCGTCACGCCACAGGTAC 60.432 66.667 0.00 0.00 0.00 3.34
461 462 2.337170 CGTCACGCCACAGGTACA 59.663 61.111 0.00 0.00 0.00 2.90
462 463 1.733041 CGTCACGCCACAGGTACAG 60.733 63.158 0.00 0.00 0.00 2.74
463 464 1.374252 GTCACGCCACAGGTACAGG 60.374 63.158 0.00 0.00 0.00 4.00
464 465 1.835267 TCACGCCACAGGTACAGGT 60.835 57.895 0.00 0.00 0.00 4.00
465 466 0.540133 TCACGCCACAGGTACAGGTA 60.540 55.000 0.00 0.00 0.00 3.08
466 467 0.535335 CACGCCACAGGTACAGGTAT 59.465 55.000 0.00 0.00 0.00 2.73
467 468 0.535335 ACGCCACAGGTACAGGTATG 59.465 55.000 0.00 0.00 0.00 2.39
485 486 7.041098 ACAGGTATGAGACTAAACAAAAAGCTG 60.041 37.037 0.00 0.00 35.48 4.24
519 520 1.269102 GGATCCTCACACGATACGGTG 60.269 57.143 3.84 0.00 43.54 4.94
831 842 1.895231 CGGCTATAAAACCCCGCCC 60.895 63.158 0.00 0.00 37.47 6.13
938 949 0.103937 GATCACAGGGCGAAGAGAGG 59.896 60.000 0.00 0.00 0.00 3.69
955 1264 6.899892 AGAGAGGAAGGGAGTGATATTTTT 57.100 37.500 0.00 0.00 0.00 1.94
956 1265 6.894682 AGAGAGGAAGGGAGTGATATTTTTC 58.105 40.000 0.00 0.00 0.00 2.29
957 1266 6.007485 AGAGGAAGGGAGTGATATTTTTCC 57.993 41.667 0.00 0.00 34.29 3.13
958 1267 4.781934 AGGAAGGGAGTGATATTTTTCCG 58.218 43.478 0.00 0.00 38.07 4.30
959 1268 4.473559 AGGAAGGGAGTGATATTTTTCCGA 59.526 41.667 0.00 0.00 38.07 4.55
960 1269 4.816925 GGAAGGGAGTGATATTTTTCCGAG 59.183 45.833 0.00 0.00 0.00 4.63
965 1279 4.381411 GAGTGATATTTTTCCGAGGAGGG 58.619 47.826 0.00 0.00 41.52 4.30
974 1288 2.060980 CCGAGGAGGGGAGTGGAAG 61.061 68.421 0.00 0.00 35.97 3.46
1020 1334 2.690510 TGCATGGACCGATCCCCA 60.691 61.111 0.00 0.00 45.59 4.96
1113 1436 5.347364 CCAACTTCTTCTTCTTCTTAGCTCG 59.653 44.000 0.00 0.00 0.00 5.03
1123 1446 0.935898 TCTTAGCTCGTCGATCGTCC 59.064 55.000 15.94 6.25 40.80 4.79
1125 1448 0.935898 TTAGCTCGTCGATCGTCCTC 59.064 55.000 15.94 3.91 40.80 3.71
1135 1458 1.404181 CGATCGTCCTCTTTCTTGCCA 60.404 52.381 7.03 0.00 0.00 4.92
1138 1461 0.512952 CGTCCTCTTTCTTGCCAACG 59.487 55.000 0.00 0.00 0.00 4.10
1151 1474 1.503542 CCAACGGCTGCATCTTGTC 59.496 57.895 0.50 0.00 0.00 3.18
1161 1484 3.178267 CTGCATCTTGTCTCTCTTCGTC 58.822 50.000 0.00 0.00 0.00 4.20
1162 1485 2.181205 GCATCTTGTCTCTCTTCGTCG 58.819 52.381 0.00 0.00 0.00 5.12
1163 1486 2.414824 GCATCTTGTCTCTCTTCGTCGT 60.415 50.000 0.00 0.00 0.00 4.34
1164 1487 3.421741 CATCTTGTCTCTCTTCGTCGTC 58.578 50.000 0.00 0.00 0.00 4.20
1165 1488 1.459975 TCTTGTCTCTCTTCGTCGTCG 59.540 52.381 0.00 0.00 38.55 5.12
1166 1489 0.516001 TTGTCTCTCTTCGTCGTCGG 59.484 55.000 1.55 0.00 37.69 4.79
1167 1490 1.226073 GTCTCTCTTCGTCGTCGGC 60.226 63.158 1.55 0.00 37.69 5.54
1168 1491 2.276743 CTCTCTTCGTCGTCGGCG 60.277 66.667 14.12 14.12 37.69 6.46
1169 1492 2.737688 CTCTCTTCGTCGTCGGCGA 61.738 63.158 19.36 19.36 45.79 5.54
1370 2895 1.160329 CGGCGCCAGGAAGAATAAGG 61.160 60.000 28.98 0.12 0.00 2.69
1371 2896 1.448119 GGCGCCAGGAAGAATAAGGC 61.448 60.000 24.80 0.00 41.86 4.35
1405 2930 1.586564 CGTCTACTACTGCTGCGCC 60.587 63.158 4.18 0.00 0.00 6.53
1423 2948 1.202330 CCTTCTGAGCTCCACAGGAT 58.798 55.000 12.15 0.00 36.22 3.24
1450 2979 0.250124 ATGAACGCGGAAACTGGACA 60.250 50.000 12.47 0.00 0.00 4.02
1451 2980 0.878523 TGAACGCGGAAACTGGACAG 60.879 55.000 12.47 0.00 0.00 3.51
1452 2981 2.171489 GAACGCGGAAACTGGACAGC 62.171 60.000 12.47 0.00 0.00 4.40
1453 2982 2.357517 CGCGGAAACTGGACAGCT 60.358 61.111 0.00 0.00 0.00 4.24
1524 3056 3.612860 CCGTGTGTAGATAGAAACAGCAC 59.387 47.826 0.00 0.00 0.00 4.40
1669 3202 2.434185 TGAACGAGATGTGCGGCC 60.434 61.111 0.00 0.00 0.00 6.13
1710 3243 3.725754 TCTTGCCTCAAGAACCACC 57.274 52.632 6.78 0.00 45.84 4.61
1711 3244 0.110486 TCTTGCCTCAAGAACCACCC 59.890 55.000 6.78 0.00 45.84 4.61
1762 3295 0.381801 GGAGCAGAGAGAAGAGAGCG 59.618 60.000 0.00 0.00 0.00 5.03
1781 3322 7.916450 AGAGAGCGATGTTTGTAGTAGTAATTC 59.084 37.037 0.00 0.00 0.00 2.17
1829 3372 2.568623 ATAACATCGGATCTTGCCCC 57.431 50.000 0.00 0.00 0.00 5.80
1830 3373 1.507140 TAACATCGGATCTTGCCCCT 58.493 50.000 0.00 0.00 0.00 4.79
1831 3374 1.507140 AACATCGGATCTTGCCCCTA 58.493 50.000 0.00 0.00 0.00 3.53
1832 3375 1.507140 ACATCGGATCTTGCCCCTAA 58.493 50.000 0.00 0.00 0.00 2.69
1833 3376 1.843851 ACATCGGATCTTGCCCCTAAA 59.156 47.619 0.00 0.00 0.00 1.85
1834 3377 2.222027 CATCGGATCTTGCCCCTAAAC 58.778 52.381 0.00 0.00 0.00 2.01
1835 3378 1.580059 TCGGATCTTGCCCCTAAACT 58.420 50.000 0.00 0.00 0.00 2.66
1836 3379 1.913419 TCGGATCTTGCCCCTAAACTT 59.087 47.619 0.00 0.00 0.00 2.66
1837 3380 2.017049 CGGATCTTGCCCCTAAACTTG 58.983 52.381 0.00 0.00 0.00 3.16
1838 3381 2.618045 CGGATCTTGCCCCTAAACTTGT 60.618 50.000 0.00 0.00 0.00 3.16
1839 3382 3.431415 GGATCTTGCCCCTAAACTTGTT 58.569 45.455 0.00 0.00 0.00 2.83
1840 3383 3.832490 GGATCTTGCCCCTAAACTTGTTT 59.168 43.478 4.14 4.14 0.00 2.83
1841 3384 4.321974 GGATCTTGCCCCTAAACTTGTTTG 60.322 45.833 8.79 0.32 0.00 2.93
1842 3385 3.637769 TCTTGCCCCTAAACTTGTTTGT 58.362 40.909 8.79 0.00 0.00 2.83
1843 3386 4.027437 TCTTGCCCCTAAACTTGTTTGTT 58.973 39.130 8.79 0.00 0.00 2.83
1844 3387 4.468153 TCTTGCCCCTAAACTTGTTTGTTT 59.532 37.500 8.79 0.00 42.10 2.83
1845 3388 4.130286 TGCCCCTAAACTTGTTTGTTTG 57.870 40.909 8.79 0.00 40.00 2.93
1846 3389 3.769844 TGCCCCTAAACTTGTTTGTTTGA 59.230 39.130 8.79 0.00 40.00 2.69
1847 3390 4.407296 TGCCCCTAAACTTGTTTGTTTGAT 59.593 37.500 8.79 0.00 40.00 2.57
1848 3391 4.988540 GCCCCTAAACTTGTTTGTTTGATC 59.011 41.667 8.79 0.00 40.00 2.92
1849 3392 5.221441 GCCCCTAAACTTGTTTGTTTGATCT 60.221 40.000 8.79 0.00 40.00 2.75
1850 3393 6.015772 GCCCCTAAACTTGTTTGTTTGATCTA 60.016 38.462 8.79 0.00 40.00 1.98
1851 3394 7.593825 CCCCTAAACTTGTTTGTTTGATCTAG 58.406 38.462 8.79 0.00 40.00 2.43
1852 3395 7.084486 CCCTAAACTTGTTTGTTTGATCTAGC 58.916 38.462 8.79 0.00 40.00 3.42
1853 3396 7.084486 CCTAAACTTGTTTGTTTGATCTAGCC 58.916 38.462 8.79 0.00 40.00 3.93
1854 3397 6.463995 AAACTTGTTTGTTTGATCTAGCCA 57.536 33.333 0.00 0.00 38.54 4.75
1862 3405 9.023962 TGTTTGTTTGATCTAGCCAATTAATCT 57.976 29.630 0.00 0.00 0.00 2.40
1887 3430 7.546778 TCTTAAAATTGGTTTGCCTTTTCAC 57.453 32.000 0.00 0.00 35.27 3.18
1913 3456 5.185668 TGTTTGTGGTGATGATTTGTCTG 57.814 39.130 0.00 0.00 0.00 3.51
1919 3462 2.415090 GGTGATGATTTGTCTGCACTGC 60.415 50.000 0.00 0.00 0.00 4.40
1920 3463 2.227149 GTGATGATTTGTCTGCACTGCA 59.773 45.455 3.11 3.11 36.92 4.41
1946 3489 5.164129 CGATGTCACTTGATTTTGCATGTTG 60.164 40.000 0.00 0.00 0.00 3.33
2001 3544 6.045072 TCTAACTCGTTGGTGATATGGTTT 57.955 37.500 0.00 0.00 0.00 3.27
2002 3545 5.872617 TCTAACTCGTTGGTGATATGGTTTG 59.127 40.000 0.00 0.00 0.00 2.93
2004 3547 4.647611 ACTCGTTGGTGATATGGTTTGAA 58.352 39.130 0.00 0.00 0.00 2.69
2005 3548 5.253330 ACTCGTTGGTGATATGGTTTGAAT 58.747 37.500 0.00 0.00 0.00 2.57
2006 3549 6.411376 ACTCGTTGGTGATATGGTTTGAATA 58.589 36.000 0.00 0.00 0.00 1.75
2007 3550 6.315393 ACTCGTTGGTGATATGGTTTGAATAC 59.685 38.462 0.00 0.00 0.00 1.89
2008 3551 5.292345 TCGTTGGTGATATGGTTTGAATACG 59.708 40.000 0.00 0.00 0.00 3.06
2039 3591 7.442656 ACCGGAAATAGAACATACCTATCAAG 58.557 38.462 9.46 0.00 0.00 3.02
2083 3638 1.475682 ACGTTCTCGGGTACTCAATCC 59.524 52.381 0.00 0.00 41.85 3.01
2164 3730 9.938280 AACTATGAGTAGTGCAAAAACTATGTA 57.062 29.630 0.00 0.00 40.24 2.29
2222 3788 5.465724 AGTGTAACAACGATTGGAGAAGAAC 59.534 40.000 0.00 0.00 41.43 3.01
2230 3796 6.037786 ACGATTGGAGAAGAACTGTAATCA 57.962 37.500 0.00 0.00 32.14 2.57
2278 3844 4.692228 TCCTTTTGACCAATTGCAAGAAC 58.308 39.130 4.94 0.00 0.00 3.01
2283 3849 5.534207 TTGACCAATTGCAAGAACAATCT 57.466 34.783 4.94 0.00 39.32 2.40
2284 3850 5.534207 TGACCAATTGCAAGAACAATCTT 57.466 34.783 4.94 0.00 46.91 2.40
2285 3851 5.531634 TGACCAATTGCAAGAACAATCTTC 58.468 37.500 4.94 0.00 44.11 2.87
2299 3865 6.266103 AGAACAATCTTCAGCTTTCCAAATCA 59.734 34.615 0.00 0.00 29.15 2.57
2310 3877 5.928264 AGCTTTCCAAATCATTTTCTTTCCG 59.072 36.000 0.00 0.00 0.00 4.30
2314 3881 4.083003 TCCAAATCATTTTCTTTCCGTCCG 60.083 41.667 0.00 0.00 0.00 4.79
2317 3884 2.419667 TCATTTTCTTTCCGTCCGTCC 58.580 47.619 0.00 0.00 0.00 4.79
2364 3931 3.245407 CCCACCCCTCTTTCTTCAAGAAT 60.245 47.826 0.00 0.00 41.25 2.40
2411 3978 2.033492 TCGTTCTCGTTTTCTTTTCCGC 60.033 45.455 0.00 0.00 38.33 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.219393 CTCTTTCCTCACCGAGCCC 59.781 63.158 0.00 0.00 0.00 5.19
1 2 0.174617 CTCTCTTTCCTCACCGAGCC 59.825 60.000 0.00 0.00 0.00 4.70
2 3 0.892063 ACTCTCTTTCCTCACCGAGC 59.108 55.000 0.00 0.00 0.00 5.03
3 4 2.163412 CTCACTCTCTTTCCTCACCGAG 59.837 54.545 0.00 0.00 0.00 4.63
4 5 2.163509 CTCACTCTCTTTCCTCACCGA 58.836 52.381 0.00 0.00 0.00 4.69
5 6 1.403514 GCTCACTCTCTTTCCTCACCG 60.404 57.143 0.00 0.00 0.00 4.94
6 7 1.403514 CGCTCACTCTCTTTCCTCACC 60.404 57.143 0.00 0.00 0.00 4.02
7 8 1.989430 CGCTCACTCTCTTTCCTCAC 58.011 55.000 0.00 0.00 0.00 3.51
8 9 0.244994 GCGCTCACTCTCTTTCCTCA 59.755 55.000 0.00 0.00 0.00 3.86
9 10 0.800300 CGCGCTCACTCTCTTTCCTC 60.800 60.000 5.56 0.00 0.00 3.71
10 11 1.214062 CGCGCTCACTCTCTTTCCT 59.786 57.895 5.56 0.00 0.00 3.36
11 12 1.080434 ACGCGCTCACTCTCTTTCC 60.080 57.895 5.73 0.00 0.00 3.13
12 13 1.950098 GCACGCGCTCACTCTCTTTC 61.950 60.000 5.73 0.00 34.30 2.62
13 14 2.024319 GCACGCGCTCACTCTCTTT 61.024 57.895 5.73 0.00 34.30 2.52
14 15 2.431601 GCACGCGCTCACTCTCTT 60.432 61.111 5.73 0.00 34.30 2.85
15 16 4.767841 CGCACGCGCTCACTCTCT 62.768 66.667 5.73 0.00 35.30 3.10
17 18 4.647615 AACGCACGCGCTCACTCT 62.648 61.111 12.02 0.00 44.19 3.24
18 19 4.122515 GAACGCACGCGCTCACTC 62.123 66.667 12.02 0.00 44.19 3.51
22 23 2.469286 TAAAACGAACGCACGCGCTC 62.469 55.000 12.02 8.13 44.19 5.03
23 24 1.893168 ATAAAACGAACGCACGCGCT 61.893 50.000 12.02 0.00 44.19 5.92
24 25 1.508332 ATAAAACGAACGCACGCGC 60.508 52.632 12.02 0.00 44.19 6.86
25 26 0.449831 ACATAAAACGAACGCACGCG 60.450 50.000 10.36 10.36 46.03 6.01
26 27 1.235695 GACATAAAACGAACGCACGC 58.764 50.000 0.00 0.00 36.70 5.34
27 28 1.780636 CGGACATAAAACGAACGCACG 60.781 52.381 0.00 0.48 39.31 5.34
28 29 1.860709 CGGACATAAAACGAACGCAC 58.139 50.000 0.00 0.00 0.00 5.34
29 30 0.164217 GCGGACATAAAACGAACGCA 59.836 50.000 0.00 0.00 44.32 5.24
30 31 0.850391 CGCGGACATAAAACGAACGC 60.850 55.000 0.00 0.00 41.84 4.84
31 32 0.850391 GCGCGGACATAAAACGAACG 60.850 55.000 8.83 0.00 0.00 3.95
32 33 0.519792 GGCGCGGACATAAAACGAAC 60.520 55.000 8.83 0.00 0.00 3.95
33 34 1.789116 GGCGCGGACATAAAACGAA 59.211 52.632 8.83 0.00 0.00 3.85
34 35 2.446253 CGGCGCGGACATAAAACGA 61.446 57.895 9.72 0.00 0.00 3.85
35 36 2.020832 CGGCGCGGACATAAAACG 59.979 61.111 9.72 0.00 0.00 3.60
36 37 1.059838 GTCGGCGCGGACATAAAAC 59.940 57.895 34.74 13.06 36.91 2.43
37 38 2.446253 CGTCGGCGCGGACATAAAA 61.446 57.895 36.77 7.47 36.73 1.52
38 39 2.881827 CGTCGGCGCGGACATAAA 60.882 61.111 36.77 8.17 36.73 1.40
48 49 2.014093 GAGTCTGATTTGCGTCGGCG 62.014 60.000 4.29 4.29 44.10 6.46
49 50 1.014044 TGAGTCTGATTTGCGTCGGC 61.014 55.000 0.00 0.00 40.52 5.54
50 51 1.428448 TTGAGTCTGATTTGCGTCGG 58.572 50.000 0.00 0.00 0.00 4.79
51 52 3.519908 TTTTGAGTCTGATTTGCGTCG 57.480 42.857 0.00 0.00 0.00 5.12
52 53 6.738649 GTCTATTTTTGAGTCTGATTTGCGTC 59.261 38.462 0.00 0.00 0.00 5.19
53 54 6.348540 GGTCTATTTTTGAGTCTGATTTGCGT 60.349 38.462 0.00 0.00 0.00 5.24
54 55 6.024049 GGTCTATTTTTGAGTCTGATTTGCG 58.976 40.000 0.00 0.00 0.00 4.85
55 56 6.913170 TGGTCTATTTTTGAGTCTGATTTGC 58.087 36.000 0.00 0.00 0.00 3.68
56 57 8.327941 TCTGGTCTATTTTTGAGTCTGATTTG 57.672 34.615 0.00 0.00 0.00 2.32
57 58 8.924511 TTCTGGTCTATTTTTGAGTCTGATTT 57.075 30.769 0.00 0.00 0.00 2.17
58 59 8.924511 TTTCTGGTCTATTTTTGAGTCTGATT 57.075 30.769 0.00 0.00 0.00 2.57
59 60 8.954350 CATTTCTGGTCTATTTTTGAGTCTGAT 58.046 33.333 0.00 0.00 0.00 2.90
60 61 8.156820 TCATTTCTGGTCTATTTTTGAGTCTGA 58.843 33.333 0.00 0.00 0.00 3.27
61 62 8.327941 TCATTTCTGGTCTATTTTTGAGTCTG 57.672 34.615 0.00 0.00 0.00 3.51
62 63 8.924511 TTCATTTCTGGTCTATTTTTGAGTCT 57.075 30.769 0.00 0.00 0.00 3.24
64 65 9.918630 CAATTCATTTCTGGTCTATTTTTGAGT 57.081 29.630 0.00 0.00 0.00 3.41
65 66 9.362539 CCAATTCATTTCTGGTCTATTTTTGAG 57.637 33.333 0.00 0.00 0.00 3.02
66 67 7.818930 GCCAATTCATTTCTGGTCTATTTTTGA 59.181 33.333 0.00 0.00 32.46 2.69
67 68 7.603404 TGCCAATTCATTTCTGGTCTATTTTTG 59.397 33.333 0.00 0.00 32.46 2.44
68 69 7.678837 TGCCAATTCATTTCTGGTCTATTTTT 58.321 30.769 0.00 0.00 32.46 1.94
69 70 7.178983 TCTGCCAATTCATTTCTGGTCTATTTT 59.821 33.333 0.00 0.00 32.46 1.82
70 71 6.664816 TCTGCCAATTCATTTCTGGTCTATTT 59.335 34.615 0.00 0.00 32.46 1.40
71 72 6.096001 GTCTGCCAATTCATTTCTGGTCTATT 59.904 38.462 0.00 0.00 32.46 1.73
72 73 5.591877 GTCTGCCAATTCATTTCTGGTCTAT 59.408 40.000 0.00 0.00 32.46 1.98
73 74 4.943705 GTCTGCCAATTCATTTCTGGTCTA 59.056 41.667 0.00 0.00 32.46 2.59
74 75 3.760684 GTCTGCCAATTCATTTCTGGTCT 59.239 43.478 0.00 0.00 32.46 3.85
75 76 3.426695 CGTCTGCCAATTCATTTCTGGTC 60.427 47.826 0.00 0.00 32.46 4.02
76 77 2.489329 CGTCTGCCAATTCATTTCTGGT 59.511 45.455 0.00 0.00 32.46 4.00
77 78 2.749076 TCGTCTGCCAATTCATTTCTGG 59.251 45.455 0.00 0.00 0.00 3.86
78 79 4.161333 GTTCGTCTGCCAATTCATTTCTG 58.839 43.478 0.00 0.00 0.00 3.02
79 80 3.120199 CGTTCGTCTGCCAATTCATTTCT 60.120 43.478 0.00 0.00 0.00 2.52
80 81 3.120338 TCGTTCGTCTGCCAATTCATTTC 60.120 43.478 0.00 0.00 0.00 2.17
81 82 2.811431 TCGTTCGTCTGCCAATTCATTT 59.189 40.909 0.00 0.00 0.00 2.32
82 83 2.422597 TCGTTCGTCTGCCAATTCATT 58.577 42.857 0.00 0.00 0.00 2.57
83 84 2.093306 TCGTTCGTCTGCCAATTCAT 57.907 45.000 0.00 0.00 0.00 2.57
84 85 1.872388 TTCGTTCGTCTGCCAATTCA 58.128 45.000 0.00 0.00 0.00 2.57
85 86 2.839474 CTTTCGTTCGTCTGCCAATTC 58.161 47.619 0.00 0.00 0.00 2.17
86 87 1.069227 GCTTTCGTTCGTCTGCCAATT 60.069 47.619 0.00 0.00 0.00 2.32
87 88 0.517316 GCTTTCGTTCGTCTGCCAAT 59.483 50.000 0.00 0.00 0.00 3.16
88 89 1.827315 CGCTTTCGTTCGTCTGCCAA 61.827 55.000 0.00 0.00 0.00 4.52
89 90 2.307309 CGCTTTCGTTCGTCTGCCA 61.307 57.895 0.00 0.00 0.00 4.92
90 91 1.554042 TTCGCTTTCGTTCGTCTGCC 61.554 55.000 0.00 0.00 36.96 4.85
91 92 0.449022 GTTCGCTTTCGTTCGTCTGC 60.449 55.000 0.00 0.00 36.96 4.26
92 93 0.850217 TGTTCGCTTTCGTTCGTCTG 59.150 50.000 0.00 0.00 36.96 3.51
93 94 0.850856 GTGTTCGCTTTCGTTCGTCT 59.149 50.000 0.00 0.00 36.96 4.18
94 95 0.446784 CGTGTTCGCTTTCGTTCGTC 60.447 55.000 0.00 0.00 36.96 4.20
95 96 1.141591 ACGTGTTCGCTTTCGTTCGT 61.142 50.000 0.00 0.00 41.18 3.85
96 97 0.713718 CACGTGTTCGCTTTCGTTCG 60.714 55.000 7.58 0.00 41.18 3.95
97 98 0.299597 ACACGTGTTCGCTTTCGTTC 59.700 50.000 17.22 0.00 41.18 3.95
98 99 0.299597 GACACGTGTTCGCTTTCGTT 59.700 50.000 24.26 0.00 41.18 3.85
99 100 1.485032 GGACACGTGTTCGCTTTCGT 61.485 55.000 24.26 0.00 41.18 3.85
100 101 1.200839 GGACACGTGTTCGCTTTCG 59.799 57.895 24.26 0.00 41.18 3.46
101 102 1.200839 CGGACACGTGTTCGCTTTC 59.799 57.895 34.14 14.18 40.46 2.62
102 103 3.315796 CGGACACGTGTTCGCTTT 58.684 55.556 34.14 4.08 40.46 3.51
107 108 0.874607 ACTCAAGCGGACACGTGTTC 60.875 55.000 24.26 20.80 43.45 3.18
108 109 0.874607 GACTCAAGCGGACACGTGTT 60.875 55.000 24.26 3.23 43.45 3.32
109 110 1.299926 GACTCAAGCGGACACGTGT 60.300 57.895 23.64 23.64 43.45 4.49
110 111 1.278172 CTGACTCAAGCGGACACGTG 61.278 60.000 15.48 15.48 43.45 4.49
111 112 1.007271 CTGACTCAAGCGGACACGT 60.007 57.895 0.00 0.00 43.45 4.49
112 113 2.375766 GCTGACTCAAGCGGACACG 61.376 63.158 0.00 0.00 44.63 4.49
113 114 3.555428 GCTGACTCAAGCGGACAC 58.445 61.111 0.00 0.00 32.56 3.67
119 120 0.601311 AACTCCACGCTGACTCAAGC 60.601 55.000 0.00 0.00 39.94 4.01
120 121 1.143305 CAACTCCACGCTGACTCAAG 58.857 55.000 0.00 0.00 0.00 3.02
121 122 0.249868 CCAACTCCACGCTGACTCAA 60.250 55.000 0.00 0.00 0.00 3.02
122 123 1.112916 TCCAACTCCACGCTGACTCA 61.113 55.000 0.00 0.00 0.00 3.41
123 124 0.667792 GTCCAACTCCACGCTGACTC 60.668 60.000 0.00 0.00 0.00 3.36
124 125 1.367840 GTCCAACTCCACGCTGACT 59.632 57.895 0.00 0.00 0.00 3.41
125 126 2.022129 CGTCCAACTCCACGCTGAC 61.022 63.158 0.00 0.00 0.00 3.51
126 127 2.338620 CGTCCAACTCCACGCTGA 59.661 61.111 0.00 0.00 0.00 4.26
127 128 2.738521 CCGTCCAACTCCACGCTG 60.739 66.667 0.00 0.00 34.58 5.18
128 129 4.681978 GCCGTCCAACTCCACGCT 62.682 66.667 0.00 0.00 34.58 5.07
145 146 3.192922 GACCCATTTCGTCCGCGG 61.193 66.667 22.12 22.12 38.89 6.46
146 147 3.550992 CGACCCATTTCGTCCGCG 61.551 66.667 0.00 0.00 39.92 6.46
147 148 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
148 149 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
160 161 3.870274 AGAGTAGTTTTAATGGGGCGAC 58.130 45.455 0.00 0.00 0.00 5.19
161 162 5.422145 GTTAGAGTAGTTTTAATGGGGCGA 58.578 41.667 0.00 0.00 0.00 5.54
162 163 4.573607 GGTTAGAGTAGTTTTAATGGGGCG 59.426 45.833 0.00 0.00 0.00 6.13
163 164 5.752650 AGGTTAGAGTAGTTTTAATGGGGC 58.247 41.667 0.00 0.00 0.00 5.80
164 165 7.048512 CAGAGGTTAGAGTAGTTTTAATGGGG 58.951 42.308 0.00 0.00 0.00 4.96
165 166 7.848128 TCAGAGGTTAGAGTAGTTTTAATGGG 58.152 38.462 0.00 0.00 0.00 4.00
166 167 9.892130 AATCAGAGGTTAGAGTAGTTTTAATGG 57.108 33.333 0.00 0.00 0.00 3.16
170 171 9.635520 CGAAAATCAGAGGTTAGAGTAGTTTTA 57.364 33.333 0.00 0.00 0.00 1.52
171 172 8.365647 TCGAAAATCAGAGGTTAGAGTAGTTTT 58.634 33.333 0.00 0.00 0.00 2.43
172 173 7.893658 TCGAAAATCAGAGGTTAGAGTAGTTT 58.106 34.615 0.00 0.00 0.00 2.66
173 174 7.463961 TCGAAAATCAGAGGTTAGAGTAGTT 57.536 36.000 0.00 0.00 0.00 2.24
174 175 7.393796 TCTTCGAAAATCAGAGGTTAGAGTAGT 59.606 37.037 0.00 0.00 0.00 2.73
175 176 7.698970 GTCTTCGAAAATCAGAGGTTAGAGTAG 59.301 40.741 0.00 0.00 0.00 2.57
176 177 7.362747 GGTCTTCGAAAATCAGAGGTTAGAGTA 60.363 40.741 0.00 0.00 0.00 2.59
177 178 6.391537 GTCTTCGAAAATCAGAGGTTAGAGT 58.608 40.000 0.00 0.00 0.00 3.24
178 179 5.808030 GGTCTTCGAAAATCAGAGGTTAGAG 59.192 44.000 0.00 0.00 0.00 2.43
179 180 5.245301 TGGTCTTCGAAAATCAGAGGTTAGA 59.755 40.000 0.00 0.00 0.00 2.10
180 181 5.348997 GTGGTCTTCGAAAATCAGAGGTTAG 59.651 44.000 0.00 0.00 0.00 2.34
181 182 5.235516 GTGGTCTTCGAAAATCAGAGGTTA 58.764 41.667 0.00 0.00 0.00 2.85
182 183 4.065789 GTGGTCTTCGAAAATCAGAGGTT 58.934 43.478 0.00 0.00 0.00 3.50
183 184 3.665190 GTGGTCTTCGAAAATCAGAGGT 58.335 45.455 0.00 0.00 0.00 3.85
184 185 2.668457 CGTGGTCTTCGAAAATCAGAGG 59.332 50.000 0.00 0.00 0.00 3.69
185 186 3.575630 TCGTGGTCTTCGAAAATCAGAG 58.424 45.455 0.00 0.00 34.36 3.35
186 187 3.653539 TCGTGGTCTTCGAAAATCAGA 57.346 42.857 0.00 0.00 34.36 3.27
187 188 4.177026 AGATCGTGGTCTTCGAAAATCAG 58.823 43.478 0.00 0.00 40.61 2.90
188 189 4.188247 AGATCGTGGTCTTCGAAAATCA 57.812 40.909 0.00 0.00 40.61 2.57
189 190 6.210078 AGATAGATCGTGGTCTTCGAAAATC 58.790 40.000 0.00 0.00 40.61 2.17
190 191 6.150396 AGATAGATCGTGGTCTTCGAAAAT 57.850 37.500 0.00 0.00 40.61 1.82
191 192 5.578005 AGATAGATCGTGGTCTTCGAAAA 57.422 39.130 0.00 0.00 40.61 2.29
192 193 6.688637 TTAGATAGATCGTGGTCTTCGAAA 57.311 37.500 0.00 0.00 40.61 3.46
193 194 6.879276 ATTAGATAGATCGTGGTCTTCGAA 57.121 37.500 0.00 0.00 40.61 3.71
194 195 6.485648 TGAATTAGATAGATCGTGGTCTTCGA 59.514 38.462 0.00 0.00 41.45 3.71
195 196 6.669278 TGAATTAGATAGATCGTGGTCTTCG 58.331 40.000 0.00 0.00 0.00 3.79
196 197 7.483375 CGATGAATTAGATAGATCGTGGTCTTC 59.517 40.741 0.00 0.00 33.01 2.87
197 198 7.175119 TCGATGAATTAGATAGATCGTGGTCTT 59.825 37.037 0.00 0.00 37.70 3.01
198 199 6.655425 TCGATGAATTAGATAGATCGTGGTCT 59.345 38.462 0.00 0.00 37.70 3.85
199 200 6.843208 TCGATGAATTAGATAGATCGTGGTC 58.157 40.000 0.00 0.00 37.70 4.02
200 201 6.819397 TCGATGAATTAGATAGATCGTGGT 57.181 37.500 0.00 0.00 37.70 4.16
201 202 7.643371 CAGATCGATGAATTAGATAGATCGTGG 59.357 40.741 0.54 5.51 37.17 4.94
202 203 7.643371 CCAGATCGATGAATTAGATAGATCGTG 59.357 40.741 0.54 10.28 37.17 4.35
203 204 7.680827 GCCAGATCGATGAATTAGATAGATCGT 60.681 40.741 0.54 0.00 37.17 3.73
204 205 6.636447 GCCAGATCGATGAATTAGATAGATCG 59.364 42.308 0.54 0.00 37.17 3.69
205 206 6.922957 GGCCAGATCGATGAATTAGATAGATC 59.077 42.308 0.54 10.01 34.11 2.75
206 207 6.460814 CGGCCAGATCGATGAATTAGATAGAT 60.461 42.308 0.54 0.00 0.00 1.98
207 208 5.163612 CGGCCAGATCGATGAATTAGATAGA 60.164 44.000 0.54 0.00 0.00 1.98
253 254 3.006940 GTCATTCGGTAATTGGTGCTGA 58.993 45.455 0.00 0.00 0.00 4.26
254 255 2.097466 GGTCATTCGGTAATTGGTGCTG 59.903 50.000 0.00 0.00 0.00 4.41
275 276 4.291783 TCGGTAAGAACAAAATTTTGCGG 58.708 39.130 26.94 15.07 41.79 5.69
282 283 9.471084 CCACTTTAAAATCGGTAAGAACAAAAT 57.529 29.630 0.00 0.00 0.00 1.82
283 284 8.684520 TCCACTTTAAAATCGGTAAGAACAAAA 58.315 29.630 0.00 0.00 0.00 2.44
285 286 7.282675 TGTCCACTTTAAAATCGGTAAGAACAA 59.717 33.333 0.00 0.00 0.00 2.83
287 288 7.041576 AGTGTCCACTTTAAAATCGGTAAGAAC 60.042 37.037 0.00 0.00 38.83 3.01
289 290 6.527423 AGTGTCCACTTTAAAATCGGTAAGA 58.473 36.000 0.00 0.00 38.83 2.10
290 291 6.796705 AGTGTCCACTTTAAAATCGGTAAG 57.203 37.500 0.00 0.00 38.83 2.34
304 305 5.132502 TGAAAACATGATGAAGTGTCCACT 58.867 37.500 0.00 0.00 44.94 4.00
328 329 0.881118 ACATTGTGCACGGAATCACC 59.119 50.000 13.13 0.00 32.51 4.02
335 336 1.082169 CGGTTGACATTGTGCACGG 60.082 57.895 13.13 6.90 0.00 4.94
376 377 1.398692 GCTGTCTAGGAGGACTGGAG 58.601 60.000 0.00 0.00 37.37 3.86
377 378 0.033011 GGCTGTCTAGGAGGACTGGA 60.033 60.000 0.00 0.00 37.16 3.86
378 379 0.032615 AGGCTGTCTAGGAGGACTGG 60.033 60.000 0.00 0.00 37.16 4.00
379 380 1.064017 AGAGGCTGTCTAGGAGGACTG 60.064 57.143 0.00 0.00 37.16 3.51
380 381 1.304891 AGAGGCTGTCTAGGAGGACT 58.695 55.000 0.00 0.00 37.16 3.85
381 382 3.300239 TTAGAGGCTGTCTAGGAGGAC 57.700 52.381 0.00 0.00 39.05 3.85
382 383 3.181427 GGATTAGAGGCTGTCTAGGAGGA 60.181 52.174 0.00 0.00 39.05 3.71
383 384 3.161866 GGATTAGAGGCTGTCTAGGAGG 58.838 54.545 0.00 0.00 39.05 4.30
416 417 3.495193 GATCGTGTACTTGCTCGTGTAA 58.505 45.455 0.00 0.00 0.00 2.41
460 461 7.301054 CAGCTTTTTGTTTAGTCTCATACCTG 58.699 38.462 0.00 0.00 0.00 4.00
461 462 6.431234 CCAGCTTTTTGTTTAGTCTCATACCT 59.569 38.462 0.00 0.00 0.00 3.08
462 463 6.612306 CCAGCTTTTTGTTTAGTCTCATACC 58.388 40.000 0.00 0.00 0.00 2.73
463 464 6.086871 GCCAGCTTTTTGTTTAGTCTCATAC 58.913 40.000 0.00 0.00 0.00 2.39
464 465 5.183140 GGCCAGCTTTTTGTTTAGTCTCATA 59.817 40.000 0.00 0.00 0.00 2.15
465 466 4.021981 GGCCAGCTTTTTGTTTAGTCTCAT 60.022 41.667 0.00 0.00 0.00 2.90
466 467 3.317993 GGCCAGCTTTTTGTTTAGTCTCA 59.682 43.478 0.00 0.00 0.00 3.27
467 468 3.317993 TGGCCAGCTTTTTGTTTAGTCTC 59.682 43.478 0.00 0.00 0.00 3.36
485 486 1.376609 GGATCCGTCACATGTTGGCC 61.377 60.000 0.00 0.00 0.00 5.36
938 949 4.816925 CCTCGGAAAAATATCACTCCCTTC 59.183 45.833 0.00 0.00 0.00 3.46
955 1264 2.516048 CTTCCACTCCCCTCCTCGGA 62.516 65.000 0.00 0.00 33.16 4.55
956 1265 2.038975 TTCCACTCCCCTCCTCGG 59.961 66.667 0.00 0.00 0.00 4.63
957 1266 2.060980 CCTTCCACTCCCCTCCTCG 61.061 68.421 0.00 0.00 0.00 4.63
958 1267 0.689412 CTCCTTCCACTCCCCTCCTC 60.689 65.000 0.00 0.00 0.00 3.71
959 1268 1.156322 TCTCCTTCCACTCCCCTCCT 61.156 60.000 0.00 0.00 0.00 3.69
960 1269 0.030603 ATCTCCTTCCACTCCCCTCC 60.031 60.000 0.00 0.00 0.00 4.30
965 1279 1.268352 CGATCGATCTCCTTCCACTCC 59.732 57.143 22.43 0.00 0.00 3.85
1020 1334 1.078143 GATCTTCTTGGCCGGCACT 60.078 57.895 30.85 2.10 0.00 4.40
1113 1436 1.921230 GCAAGAAAGAGGACGATCGAC 59.079 52.381 24.34 16.38 0.00 4.20
1135 1458 0.322975 AGAGACAAGATGCAGCCGTT 59.677 50.000 0.00 0.00 0.00 4.44
1138 1461 2.278854 GAAGAGAGACAAGATGCAGCC 58.721 52.381 0.00 0.00 0.00 4.85
1151 1474 2.276743 CGCCGACGACGAAGAGAG 60.277 66.667 9.28 0.00 43.93 3.20
1161 1484 0.736325 ATCCAAGAAACTCGCCGACG 60.736 55.000 0.00 0.00 42.01 5.12
1162 1485 1.439679 AATCCAAGAAACTCGCCGAC 58.560 50.000 0.00 0.00 0.00 4.79
1163 1486 1.804151 CAAATCCAAGAAACTCGCCGA 59.196 47.619 0.00 0.00 0.00 5.54
1164 1487 1.535462 ACAAATCCAAGAAACTCGCCG 59.465 47.619 0.00 0.00 0.00 6.46
1165 1488 3.643159 AACAAATCCAAGAAACTCGCC 57.357 42.857 0.00 0.00 0.00 5.54
1166 1489 4.676924 CAGAAACAAATCCAAGAAACTCGC 59.323 41.667 0.00 0.00 0.00 5.03
1167 1490 5.909610 GTCAGAAACAAATCCAAGAAACTCG 59.090 40.000 0.00 0.00 0.00 4.18
1168 1491 5.909610 CGTCAGAAACAAATCCAAGAAACTC 59.090 40.000 0.00 0.00 0.00 3.01
1169 1492 5.221048 CCGTCAGAAACAAATCCAAGAAACT 60.221 40.000 0.00 0.00 0.00 2.66
1170 1493 4.976116 CCGTCAGAAACAAATCCAAGAAAC 59.024 41.667 0.00 0.00 0.00 2.78
1171 1494 4.884744 TCCGTCAGAAACAAATCCAAGAAA 59.115 37.500 0.00 0.00 0.00 2.52
1172 1495 4.456535 TCCGTCAGAAACAAATCCAAGAA 58.543 39.130 0.00 0.00 0.00 2.52
1173 1496 4.079980 TCCGTCAGAAACAAATCCAAGA 57.920 40.909 0.00 0.00 0.00 3.02
1174 1497 4.436050 CGATCCGTCAGAAACAAATCCAAG 60.436 45.833 0.00 0.00 0.00 3.61
1405 2930 1.554160 ACATCCTGTGGAGCTCAGAAG 59.446 52.381 17.19 8.82 34.05 2.85
1423 2948 0.109039 TTCCGCGTTCATCGATCACA 60.109 50.000 4.92 0.00 42.86 3.58
1450 2979 2.993853 GGTTCCAGCCAGCTAGCT 59.006 61.111 12.68 12.68 46.45 3.32
1451 2980 2.512515 CGGTTCCAGCCAGCTAGC 60.513 66.667 6.62 6.62 0.00 3.42
1452 2981 2.512515 GCGGTTCCAGCCAGCTAG 60.513 66.667 0.00 0.00 0.00 3.42
1453 2982 4.451150 CGCGGTTCCAGCCAGCTA 62.451 66.667 0.00 0.00 0.00 3.32
1546 3078 1.532007 TCCACACGCGTTTGGTTATTC 59.468 47.619 35.87 0.00 34.19 1.75
1669 3202 6.758886 AGAGAATACGATTTCTTTGGCTGTAG 59.241 38.462 6.17 0.00 36.10 2.74
1710 3243 0.316204 CCCTACGTGCCGGTAATAGG 59.684 60.000 19.00 19.00 33.50 2.57
1711 3244 0.319297 GCCCTACGTGCCGGTAATAG 60.319 60.000 1.90 4.14 0.00 1.73
1829 3372 7.648142 TGGCTAGATCAAACAAACAAGTTTAG 58.352 34.615 0.00 0.00 39.55 1.85
1830 3373 7.575414 TGGCTAGATCAAACAAACAAGTTTA 57.425 32.000 0.00 0.00 39.55 2.01
1831 3374 6.463995 TGGCTAGATCAAACAAACAAGTTT 57.536 33.333 0.00 0.00 42.10 2.66
1832 3375 6.463995 TTGGCTAGATCAAACAAACAAGTT 57.536 33.333 0.00 0.00 0.00 2.66
1833 3376 6.655078 ATTGGCTAGATCAAACAAACAAGT 57.345 33.333 0.00 0.00 0.00 3.16
1834 3377 9.643693 ATTAATTGGCTAGATCAAACAAACAAG 57.356 29.630 0.00 0.00 0.00 3.16
1835 3378 9.638239 GATTAATTGGCTAGATCAAACAAACAA 57.362 29.630 0.00 0.00 0.00 2.83
1836 3379 9.023962 AGATTAATTGGCTAGATCAAACAAACA 57.976 29.630 0.00 0.00 0.00 2.83
1837 3380 9.860898 AAGATTAATTGGCTAGATCAAACAAAC 57.139 29.630 0.00 0.00 0.00 2.93
1839 3382 9.466497 AGAAGATTAATTGGCTAGATCAAACAA 57.534 29.630 0.00 0.00 0.00 2.83
1840 3383 9.466497 AAGAAGATTAATTGGCTAGATCAAACA 57.534 29.630 0.00 0.00 0.00 2.83
1862 3405 7.826744 AGTGAAAAGGCAAACCAATTTTAAGAA 59.173 29.630 0.00 0.00 39.06 2.52
1873 3416 5.815222 ACAAACAATAGTGAAAAGGCAAACC 59.185 36.000 0.00 0.00 0.00 3.27
1887 3430 7.539710 CAGACAAATCATCACCACAAACAATAG 59.460 37.037 0.00 0.00 0.00 1.73
1913 3456 0.588252 AAGTGACATCGTTGCAGTGC 59.412 50.000 8.58 8.58 0.00 4.40
1919 3462 4.289342 TGCAAAATCAAGTGACATCGTTG 58.711 39.130 0.00 0.00 0.00 4.10
1920 3463 4.566545 TGCAAAATCAAGTGACATCGTT 57.433 36.364 0.00 0.00 0.00 3.85
1946 3489 7.906611 AAGCAAAGAAAAACAAAACAACAAC 57.093 28.000 0.00 0.00 0.00 3.32
2001 3544 2.721274 TTCCGGTTTCGACGTATTCA 57.279 45.000 0.00 0.00 39.00 2.57
2002 3545 5.036737 TCTATTTCCGGTTTCGACGTATTC 58.963 41.667 0.00 0.00 39.00 1.75
2004 3547 4.637483 TCTATTTCCGGTTTCGACGTAT 57.363 40.909 0.00 0.00 39.00 3.06
2005 3548 4.165779 GTTCTATTTCCGGTTTCGACGTA 58.834 43.478 0.00 0.00 39.00 3.57
2006 3549 2.989166 GTTCTATTTCCGGTTTCGACGT 59.011 45.455 0.00 0.00 39.00 4.34
2007 3550 2.988493 TGTTCTATTTCCGGTTTCGACG 59.012 45.455 0.00 0.00 39.00 5.12
2008 3551 5.006068 GGTATGTTCTATTTCCGGTTTCGAC 59.994 44.000 0.00 0.00 39.00 4.20
2039 3591 3.508744 ATTTCATCCGTGATTGCCAAC 57.491 42.857 0.00 0.00 33.56 3.77
2083 3638 8.964420 AAACAATATAAACTTGATGTTGGACG 57.036 30.769 1.76 0.00 39.13 4.79
2222 3788 7.031372 CCCACAGTTGATCAAAATGATTACAG 58.969 38.462 22.36 5.18 37.20 2.74
2230 3796 3.618019 GCATGCCCACAGTTGATCAAAAT 60.618 43.478 10.35 0.00 0.00 1.82
2241 3807 2.062971 AAGGATTAGCATGCCCACAG 57.937 50.000 15.66 0.00 0.00 3.66
2278 3844 7.900782 AAATGATTTGGAAAGCTGAAGATTG 57.099 32.000 0.00 0.00 0.00 2.67
2283 3849 7.442062 GGAAAGAAAATGATTTGGAAAGCTGAA 59.558 33.333 0.00 0.00 0.00 3.02
2284 3850 6.930722 GGAAAGAAAATGATTTGGAAAGCTGA 59.069 34.615 0.00 0.00 0.00 4.26
2285 3851 6.128742 CGGAAAGAAAATGATTTGGAAAGCTG 60.129 38.462 0.00 0.00 0.00 4.24
2299 3865 2.038033 TGAGGACGGACGGAAAGAAAAT 59.962 45.455 0.00 0.00 0.00 1.82
2310 3877 0.526662 AGACAACGATGAGGACGGAC 59.473 55.000 0.00 0.00 34.93 4.79
2314 3881 2.742589 GGGAAAAGACAACGATGAGGAC 59.257 50.000 0.00 0.00 0.00 3.85
2317 3884 1.732259 CGGGGAAAAGACAACGATGAG 59.268 52.381 0.00 0.00 0.00 2.90
2364 3931 3.168292 TGATGTCTTTGAGCTCCTGAGA 58.832 45.455 12.15 8.87 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.