>input_sequence_81101
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---------------------------------ATGTGCATGGACCGATCCCCAGTGCCGGCCAAGAAGATCTGGCTCGC
CATCGCCTCCCGCCTCGGCCTCCGGCCAACAGCCGGTACGCTCCAACTTCTTCTTCTTCTT---------AGCTCGTCGA
TCGTCCTCTTTCTTGCCAACGGCTGCATCTTGTCTCTCTTCGTCGTCGGCGAGTTTCTTGGATTTGTTTCTGACGGATCG
GTCGGT----------TGCAGGGCTGAGGAAGCTGAGGAAGGAGGTGAGGACGTGCGAGTACCGCGACGTGCACATCATG
TGGGAGATGCTGAGGGAGATGGACTCCCCGGTGCCCCTGGAGGAGAAGGAGGCCGCCGCCGCCGCGGCCGTCGCGGCGGC
CGCCGGCGCCAGGAAGAAT-------------------------------------------------------------
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-----------AAGGCGGCGTGGAGCCGCTTCGTCTACTACTGCTGCGCCTTCTGA------------------------
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>chr5A_1_TraesCS5A01G400700
GGGCTCGGTGAGGAAAGAGAGTGAGCGCGTGCGTTCGTTTTATGTCCGCGCCGACGCAAATCAGACTCAAAAATAGACCA
GAAATGAATTGGCAGACGAACGAAAGCGAACACGTGTCCGCTTGAGTCAGCGTGGAGTTGGACGGCCGCGGACGAAATGG
GTCGCCCCATTAAAACTACTCTAACCTCTGATTTTCGAAGACCACGATCTATCTAATTCATCGATCTGGCCGCGGCCTAG
GAATGATGACTGATCAGCACCAATTACCGAATGACCCGCAAAATTTTGTTCTTACCGATTTTAAAGTGGACACTTCATCA
TGTTTTCAGGTGATTCCGTGCACAATGTCAACCGCGAACGAATAACCGCACACGTCCTCCAGTCCTCCTAGACAGCCTCT
AATCCAACGGCTTAATTTACACGAGCAAGTACACGATCGGGCGCCGTCACGCCACAGGTACAGGTATGAGACTAAACAAA
AAGCTGGCCAACATGTGACGGATCCTCACACGATACGGTGCGCACACCGGCC-CGCATGGGGAC--------AGGCGAAA
CCGAAATCGAGCTTTGACTTCGGGTATCTACCAGCTCACGCCCGGGCCGTCGGATCCGTCTACGCGGCAGCTTCCCGTGC
GGCGCCGGGATCCCGAGGGAACCCGCGCGGAAGCCGCGCCACGGGGCCCGCGACACCTGTGGCACGCCGCGGCCGCGGAC
AGCGGCCACGTCCCGGTCGGGGCCGTCGGAATCCGACGGCGACGCCGCGCCCAAAAGGCCCCCC-GATCGATTGCACGCG
CATCTCCCGCTTGTCCCACTCCCCGGCTATAAAACCCCGCCCCCGCCGCGCAAACTGGCAACGACGACCCAGCCGGCAGG
CAACCAAGAAACAGCTGCTGCTTTATTAGCTTCTTCCATCCATCCCAAAGATCACAGGGCGAAGAGAGGA----------
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------------------------------------------------AGGGAGTGATATTTTTCCGAG-----GAGGGG
AGTGGAAGGAGATCGATCGGTCGAGAACCGAAGATGTGCATGGACCGATCCCCAGTGCCGGCCAAGAAGATCTGGCTCGC
CATCGCCTCCCGCCTCGGCCTCCGGCCAACAGCCGGTACGCTCCAACTTCTTCTTCTTCTT---------AGCTCGTCGA
TCGTCCTCTTTCTTGCCAACGGCTGCATCTTGTCTCTCTTCGTCGTCGGCGAGTTTCTTGGATTTGTTTCTGACGGATCG
GTCGGT----------TGCAGGGCTGAGGAAGCTGAGGAAGGAGGTGAGGACGTGCGAGTACCGCGACGTGCACATCATG
TGGGAGATGCTGAGGGAGATGGACTCCCCGGTGCCCCTGGAGGAGAAGGAGGCCGCCGCCGCCGCGGCCGTCGCGGCGGC
CGCCGGCGCCAGGAAGAAT-------------------------------------------------------------
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-----------AAGGCGGCGTGGAGCCGCTTCGTCTACTACTGCTGCGCCTTCTGAGCTCCACAGGATGTGATCGAT---
-GAACGCGGAAACTGGACAGCTAGCTGGCTGGAACCGCGCCGTCAGAGTTAGAGCAGGC---TAGCAGAGAGGCCGTGTG
TAGATAGAAACAGCACTGGCCCTCTCACAGGCTGTGCGAATAACCAAACGCGTGTGGATCCGTCCCAAATGGTCCATTGG
AGATCGATCATCGTTGTGCGC-AAAACAGGATTCAGATTATGAGGATGTGAATTCAGAGGATGGTGAACGAGATGTGCGG
CCTACAGCCAAAGAAATCGTATTCTCTTGCCTCAAGAACCACCCTATTACCGGCACGTAGGGCTCCCTTTTCCCCGGAGC
AGAGAGAAGAGAGCGA---TGTTTGTAGTA-----GTAATTCGTACAAAGAAAATTAAGAAAAAA--AATCTATAACATC
GGATCTTGCCCCTAAACTTGTTTGTTTGATCTAGCCAATTAATCTTCTTAAAATTGGTTTGCCTTTTCACTATTGTTTGT
GGTGATGATTTGTCTGCACTGCAACGATGTCACTTGATTTTGCATGTTGTTGTTGTTTTGTTTTTCTTTGCTTTATCTTC
TCTAACTCGTTGGTGATATGGTTTGAATACGTCGAAACCGGAAATAGAACATAC---------CTATCAAGTTGGCAATC
ACGGATGAA--ATTTAACGTTCTCGGGTA-CTCAATCCGTCCAACATCAAGTTTATATTGTTTCTTGTATTGCATCAGTA
GAAAATAC-----------TATTAACTATGAGTAGTGCAAAAACTATGTAAAATACCATACAAATTAGGTATTAACTATG
AGTAGTGTAACAACGATTGGAGAAGAACTGTAATCATTTTGATCAACTGTGGGCATGCTAATCCTTTTGACCAATTGCAA
GAACAATCTTCAGCTTTCCAAATCATT-TTCTTTCCGTCCGTCCTCATCGTTGTCTTTTCCCCGCCCTCCCACCCCTCTT
TCTTCAAGAATCTCAGGAGCTCAAAGACATCATTATTCGTTCTCGTTTTCTTTTCCGC
>chr5D_209
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------------------------------------------------CTATCTAATTCATCGATCTGGCCGCGGCCTAG
GAATGACGACGGAGGAGCACCAATTACCGAATGACTGACAACCATC-TTGG----CGATTTTTAGGTGGACACTTCATCA
TGTTTTCACGTGATTTCGTGCACAATGTCAACCGCAAACGAATAACCACACACGTC--------CTCCTAGACAGCCTCT
AATCGAACGGCTTAATCTACACGAACAAGTACACGATC-GGCGCCGTCGCGCCACAGGTATC------AGACTAAACAAA
AAGCTAGCCAACACGTGACGGATCCTCGCACGATACGGTACGCACACCGGCC-CGCATGGAGAC--------AGGCGAAA
CCGAAATCGAGCTTTGACTTCGGGTCTCTACCAGCTCACGCCCGGGCCGTCGGATCCGTCTACGCGGCAGCTTCCCGTGC
GGCGCCGGGATCCCGAGGGAACCCGCCACGAAGCCGCGCCACGGGGCCCGCGACACCTGTGGCACACCGCGGCCGCGGAC
AGCGGCCACGTCCCGGTCGGGGCCGTCGAAATCCGACGGCGACGCCGCGCCCAAAAGGCCCCCC-GATCG----CACGCG
CATCCCCCGCTTGTCCCACTCCCCGGCTATAAAACCCCGCCTCCGCCGCGCAAACGGGCAACGACGACTCAGCCGGCAGG
CAACCAAGAAACAACTGCTGCTTTATCAGTTTCTTCCATCCACCCCAAAGATCACAGGACAAGGAGAGAA----------
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------------------------------------------------AGGGAGTGATATTTTCAGAGATTTCCGAGGAG
AGTGGAAAGAGATCGATCGGCCAAGAACCGAAGATGTGCATGGACCGATCCCCGGTGCCGGCCAAGAAGATATGGCTCGC
CATCGCGTCCCGCCTCGGCCTCCGGCCGACAGCTGGTACGCTTGAACTTCT------TCTTCT------TAGCTCATCGA
TCCTCTTGTTTCTTGCCGACAGCTGCATCTTGTTTCTCTTGGT--------------TTGGATTTGTTTCTGACGGATCG
ATCGGTTTGGTTGCGCTGCAGGGCTTAGGAACCTGAGGAAGGAGGTGAGGACGTGCGAGTACCGCGACGTCCACATCATG
TGGGAGATGTTGAGGGAGATGGACTCCCCGGTGCCCCTGGAGGAGAAGCAGGCCGCCGGGGCCGCGGCCGTCGCGGCGGC
CGCCGGCGCCAGGAAGAAGAAGGCGGCGTGGAGCCGCTTCGTCTACTACTGCTGCGCGTTCTGAGCTCGAGGACGTGATA
GCTGAAAGTGGAGATTGGACAGCTGGATCCGCATCGTCAGAATTAGAGCAGGCGCAGAGAGGCCGTGTGTAGATAGAAAC
TAGGTCGACTGCCAGTTCTTCGCCGTGTTGGGTCACTTCATGTCGAAGTAGCCGGAGCTCTTCTTCGCCTGGATCTCGAG
TCCACCACAGATCTGCATCACCTTCTTCCCCACCGTCTGCGGCTTGGCTTAGATGTACTTGAAGAGCACCCAGTTGGGCG
GGAGCCAAGAAACCCCTTGCACAATGTGATGAAGCACGAGAGGTGTGCCACCCGGTTGTTTTTTTTTTGGATTAAGCCAG
TTTTATTACTCAAAGTCCACAGATAATGGGAGACAAGCTAGGTCATGGGGTTGGCCAAGCCACAAGTGACGCCCCGGACC
CCTTCTAAGAGAGAATCTGGCTAAACTATGTGCATCATAATTCACAGCACGACACTCAAAGGAAAAAAATACATTGAAAA
TGGGTAGCTCGGAGATTGATCTCGGTCACAATTGCACCACATTGCCCCCTGCTGCCAGTTGTAATATCCGAGACGACTTG
CTTGCGAGGCAATTACAAAATTGTTAAGGAGAAGATCCTCTGCCAAACACATTGCCTCCCTGCAGGCCATTGCTTCCAAT
GATGCTGGATCATCAACGCCTTCAACCACTAGAGCAGAGCTCCCCAGATAATTGCCGCCTGAATCACGACATACCGCTGC
GGCAGAACCTCCCCTCCCTGGACTGACTGCAGCATCACCATGTATCCTCGCATAGCCCATCAGAGGGGCCTTAGGTCGCC
GCGGCACTGCCGGACCAGAATTAGATGCGATCGCACGCACCACCTTTGGCATGATCATGTTAAGCTCATCACCGTATCTT
CTGATGAAATTCTGAACTGCTTGAGGACTCTGGAAAATTCAGAATTTCATCAGAAGATACGGTGATGAGCTTAACATGAT
CAGGCCAAAGGTACGGATCGATAGGTTTGGTTGCACCGCAGGGTTGAGGAATCTGAGGAAGGAGGTGAGGACGTGCGAGT
ACCGCGTGTGCACATCATGTGGGAGATGTTGAGGGAGATGGACTCCCCCGTGCCCCTGGAGGAGAAGGAGGCCGCCGGCG
CCAGGAAGAAGAAGAAGGCGTGGAGCCGCTTCGTCTACTACTACTGCGCGTTCTGAGCTCCACATGACGTGATCGAT---
-GAACACGGAAACTGGAC----AGCTGGCTGGAACCGCGCCGTCAGAGTTAGAGCAGGC---TAGCACAGAGGCCGTGTG
TAGATAGAAAC---------------------------------------------------------------------
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>chr5B_210
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-------------------------------------------------TATCTAATTCATCGATCTGGCCGCGACCTAG
GAATGATGATTGACGAGCGCCAATTACCGAAGGACTCACGACTATCTTTGG----CGATTTTGAGGTGGACACTTCATCA
TGTGTTCACGTGATTTCGTGCACAATGTCAATGGCGAACGAATAACCGCACACGTC--------TTCCTAGACAGCTTCT
AATCTCAGG--TTAGTATACAGCAGCAAGTACATGATCGGGCGCCGTCACGCCACAGGTATC------AGACTAAACAAA
AAGCGAGCGAACATGTGACGGATCCTCACACGATACGGTACGTACACCGGCCGCGCATGGGGACAAGCGAAAAGGCAAAA
CCCAAATCGAGCTTTGACTTGGAGCATCCCCG----------CGGGCCGTCGGATCCATCTACGCGGCAGCTTCCCGTGC
GGCGCCGGGATCCCGAGGGAACTCGCACGGAAGCCGCGCCACGGGGCCCGCGACACCTGTGGCACACCGCGGCCGCGGAC
AGCGGCCACGTCCCGGTCGGGGCCGTCGAAATCCGACGGCGACGCCGCGCCCAAAAGGCCCCCCCGATCG----CACGCG
CATCTCCCGCTTGTCCCACTCCCCGCCTATAAAACCCCGCCTCCGCCGCGCAAACTGGCAACGACGACCCAGGCGGCAGG
CAACCAAGAAACAGCTGCTGCTTTATTAGCTTCTTCCATCCACCCCAAAGATCACAGGACAAGGAGAGAAA---------
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------------------------------------------------AGGGAGTGATATTTTCAGAGATTTCCGAGGAG
AGTGGAAAGAGATCGATCGACCAAGAACCGAAGATGTGCATGGACCGATCTCCGGTGCCGGCGAAGAAGATCTGGCTCGC
CATCGCCTCCCGCCTCGGCCTCCGGCCAACAGCTGGTACGCTCCAACTTCTTCTTCTTCTTCT------TAGCTCATCGA
TCCTCTTGTTTCTTGCCGACAGCTGCATATTATTTCTCTTCGT--------------TTGGATTTGTTTCTGACGGATCG
GTCGGT----------TGCAGGGCTGAGGAAGCTGAGGAAGGAGGTGAGGACGTGCGAGTACCGCGACGTGCACATCATG
TGGGAGATGCTGAGGGAGATGGACTCCCCGGTGCCCCTGCAGGAGAAGGAGGCCGCCGCCGCCGCGGCCGTCGCGGCGGC
CGCCGCCGCA----------------------------------------------------------------------
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--AGGAAGAAGAAGAAGGCGTGGAGCCGCTTCGTCTACTACTGCTGCGCGTTCTGAGCTCCACAGGACGTGACCGAT---
-GCACGCGGAAACGGGAC----AGCTGGATGGAACCGCGCCGTCAGAGTTAGAGCAGGC---TAGCAGAGAGGCCGTGTG
TAGATAAAAACAGCATTGGCCCTCTCACAGGCTGTGCAAATAACCAAACGCGTGTGGATCCGTCCCAAATGGTCCATTGG
AGATC----ATCATTGTGCGCAAAAACAGGATTCAGATTATGAGGATGTGAATTCAGAGGATGGTGAACGAGATGTGCGG
CGTACAGCCAAAGAAATCATATTCTCTTGCCTGAAGAACCACA-TATTACCGGCACGTAGGG-----TTTTCCCCGGAGC
AGAGAGAAGAGAGCTA---TGTTTGTAGTAAACTAGTAATTTGTACAAAAGAAATTGAGAAAAAAATAATCTATAACATC
GGATCTTGCCC--------------------------ATTAATCCTCTTAAAATTAGTTTGCCTTTTCATTATTGTTTGT
GGTGATGGTTTGTCTCCACGGTGACGATGCCACTTGATTTTGCATGTTTTCATTGTTTTGTTTTTCTTTGCTTTATCTTC
TCTAACTTGTCGGTTATATGGTTGAATACGTCCGAAACAGGAAATAGAACATACCAGAAAGTTCTATCAATTTGGCAATC
ATGGATGAACAATTTAACGTTCTTCGGGTTCTCAATTTGTCCGACATCAAGTTTATATTGTTACTTGTATACATTAGTAT
TTTTTTATAAAAAAATAGGTGTTAACTATGCATAGTGCAAAAACTATGTGAAATATCATATAAAATAGGTATTAGTTATG
AGTAGTGTAACAATGATTGAAGAGGAATTGTAATCCTTTTGATCAATTGTGGGCATGCTAATCCTTTTGACCAATTGCAA
GAAGAATCCCGAGCTTTCCAAATCGTTGTTCTTTGCATCCATCTTCATCGTTGTCTTTTCCCTGCCCTCCCACCCCTCTT
TCTTCAAGAACCTCAGGAGCTCAAAGACATCATTATTCATTCTCATTTTCTTTTCCG-
>chr5D_297
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--------------------------------------------------------GATTTTTAGGTGAACACTTCATCA
TGTTTTCACGTGATTTCGTGCACAATGTCAACCGCGAACGAATAACCGCACACGTC--------CTCCTAGACAGCCTCT
AATCCAACGGCTTAATCTACAGGAACAAGTACACGATC-GGCGCCGTCGCGCCACAGGTATC------AGACTAAACAAA
AAGATAGCGAACATGTGACGGATCCTCACACGATACGGTACGTACACCGGCCGCGCATGGCGACAGGCGAAAAGGCGAAA
CCCAAATCGAGCTTTGACTTGGAGCATCTCCA----------CGGGCCGTCGGATCCATCTACGCGGCAGCTTCCCGTGC
GGCGCCGGGATCCCGAGGGAACCCGCGCGGAAGCCGCGCCACGGGGCCCGCGACACCTGTGGCACACCGCGGCCGCGGAC
AGCGGCCACGTCCCGGTCGGGGCCGTCGAAATCCGACGGCGACGCCGCGCCCAAAAGGCCCCCC-GATCG----CACGCG
CATCCCCCGCTTGTCCCACTCCCCGGCTATAAAACCCCGCCTCCGCCGCGCAAACTGGCAACGACGACCCAGGCGGCAGG
CAACCAAGAAACAGCTGCTGCTTTATCAGTTTCTTCCATCCATCCCAAAGATCACACGGCGAAGAGAGAGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGGGAGTGATATTTTCAGAGATTTCCAAGGAG
AGTGGAAAAA----GATCGATCGAGGATCGAAGATGTGCATGGACCGATCTCCGGTGCCGGCCAAGAAGATCTGGCTCGC
CATCGCCTCCCGCCTCGGCCTCCGGCCAACAGCCGGTACGCCCCAACTTCTTCTTCTTCTTCTTCTTCTTAGCTCATCCA
TCGTCTTGTTTCTTGCCGATAGCTGCATCTTGTTTCTCCTCGT--------------TTGGATTTGTTTCTGACGGATCG
ATCGGTTTGGTTGCGCTGCAGGGCTGAGGAACCTGAGGAAGGAGGTGAGGACGTGCGAGTACCGCGACGTCCACATCATG
TGGGAGATGCTGAGGGAGATGGACTCCCCGGTGCCCCTGGAGGAGAAGCAGGCCGCCGCCGCTGCGGCCGTCGCGGCGGC
CGCCGCCGCC----------------------------------------------------------------------
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--AGGAAGAAGAAGAAGGCGTGGAGCCGCTTCGTCTACTACTGCTGCGCGTTCTGAGCTCCACAGGACGTGATCGATCGA
TGAACACGGAAACGGGAC----AGCTCGCTGGAACCGCGCCGTCAGAGTAAGAGCAGAGGCTTAGCGGAGCGGCCGTGTG
TAGATAGATACAGCATTGGCCCTCTCACAGGTTGTGCAAATAACCAAACGCGTGTGGATCCGTCCCAAATGGTCCATTGG
AGATCGATCATCGTTGTGCGCAAAAATAGGATTCAGATTATGAGGATGTGAATTCAGAGGATGGTGAACGAGATGTGCGG
CGTACAGCCAAAGAAATCGTATTCTCTTGCCTCAAGAACCACA-TATTACCGGCACGTAGGGCTCCCTTTTCCCCGGAGC
AGAGAGAAGAGAGCTAGTATGTTTGTAG-----TAGTAATTTGTACAAAGAAAATTAAGAAAAAA--AATCTATAACATC
GGATCTTGCCC--------------------------ATTAATCCGCTTAAAATTAGTTTGCCTTTTCATTATTGTTTGT
GGTGATGATTTGTCTCCACTGTGACGATGTCACTTGATTTTCCATGTTTTTGTTGTTTTGTTTTTCTTTGCTTTATCTTC
CCTAACTCGTTGGTGATATGGTTGAATACGTTAGAAACCAGAAACGGAACATACCAGAAAGTTCTATCAATTTGGCAATC
ACGGATGAA--ATTTAACGTTCTCGAGTA-CTCCATCTGTCCAACATCAAGTTTATATTGTATCTTGTATTACGTTAGTA
CAAAATTTCAAAAAAAAGGTATTAACTATGAGTAGTGTAGAAACAATGTGAAATACCATACAAAATAGGTATTAACTATG
AGTAGTGTAACAACGATTGGAGAAGAATTGTAATCCTTTTGATCAATTGTGGGCATGCTAATCCTTTTAACCAACTGCAA
GAAGAATCCCAAGCTTTCCAAATCGTTGTTCTTTCCATCCATCTTCATCGTTGTCTTTTCCCCGCCCTCTCACCCCTCTT
TCTTCAAGAACCTCAAGAGCTCAAAGACATCATTATTCGTTCTCGTTTTCTTTTCCG-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
-------------SS--------------------S-S---SSS-S-S-SSSSSS-------S-S---------------
--------S------S----------------------------------------SSSSSSSS----------------
----------------S-------------------------------------------SSSSSSSS------------
-----S---------------------------------S----------------------------------------
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-----------------------------------------------------------------S--------------
----------------------------S-----------------------------------------SSSS------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------S-----------
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---------------------------------------------------------------SSSSSS---------S-
-------S---------------------------------------------S--------------------------
---------------------------------------------------------------------------S----
-----S-S---------S--S------------S---------SSSSSSSSSSSSSS-----------------------
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------------------S-------------------------------------------------------------
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--------------SS---------------------------------S-----------------S------------
------------------SSSS----------------------------------------------------------
---------------S---------------------S------------------------------------------
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-S----------------------------------------SS------------------------------------
--------------S--------------------------S--------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSS-------S----------S-------------S----------
---------------S-----SS-------------------------S-------------------------------
-----------------------SS-SSSSS---------------------------------------S---------
-------------------------------------S---------------------------------S-S-S----
S------S-----------------------------------------S--------------S---------------
---------------------------S-------S----------S---------------------------------
---S----SSS-------------S-----------S---S--S------------------------------------
----------S----------------------------------------------S
>forward_949
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-------------------------------------------------GATCACAGGGCGAAGAGAGG-----------
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>reverse_3877
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------------------------------------GTCCGTCCTCATCGTTGTCT------------------------
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