Multiple sequence alignment - TraesCS5A01G398800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G398800 chr5A 100.000 3390 0 0 1 3390 592624539 592621150 0.000000e+00 6261.0
1 TraesCS5A01G398800 chr5D 92.078 1073 55 18 1777 2827 472997127 472996063 0.000000e+00 1483.0
2 TraesCS5A01G398800 chr5D 90.023 852 48 13 763 1589 472998375 472997536 0.000000e+00 1068.0
3 TraesCS5A01G398800 chr5D 89.170 277 24 4 2823 3096 472996018 472995745 1.160000e-89 340.0
4 TraesCS5A01G398800 chr5D 89.247 93 9 1 3128 3220 472995747 472995656 7.690000e-22 115.0
5 TraesCS5A01G398800 chr5B 87.509 1329 97 36 901 2200 580290490 580289202 0.000000e+00 1471.0
6 TraesCS5A01G398800 chr5B 87.130 1080 86 26 2199 3238 580289120 580288054 0.000000e+00 1175.0
7 TraesCS5A01G398800 chr5B 75.319 705 100 39 245 914 580291897 580291232 1.550000e-68 270.0
8 TraesCS5A01G398800 chr5B 85.135 74 10 1 762 835 701557909 701557837 1.300000e-09 75.0
9 TraesCS5A01G398800 chr5B 89.796 49 3 1 787 835 701844292 701844246 1.020000e-05 62.1
10 TraesCS5A01G398800 chr5B 96.970 33 0 1 804 835 701910510 701910478 2.000000e-03 54.7
11 TraesCS5A01G398800 chr7D 80.247 162 21 8 276 435 637325120 637324968 9.940000e-21 111.0
12 TraesCS5A01G398800 chr1A 89.873 79 8 0 8 86 6874682 6874760 5.980000e-18 102.0
13 TraesCS5A01G398800 chrUn 85.897 78 10 1 759 835 382749168 382749091 7.800000e-12 82.4
14 TraesCS5A01G398800 chr4A 85.897 78 10 1 759 835 617718846 617718769 7.800000e-12 82.4
15 TraesCS5A01G398800 chr4A 85.897 78 10 1 759 835 617752037 617751960 7.800000e-12 82.4
16 TraesCS5A01G398800 chr4A 85.897 78 10 1 759 835 617784669 617784592 7.800000e-12 82.4
17 TraesCS5A01G398800 chr4A 84.615 78 11 1 759 835 617818087 617818010 3.630000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G398800 chr5A 592621150 592624539 3389 True 6261.0 6261 100.000000 1 3390 1 chr5A.!!$R1 3389
1 TraesCS5A01G398800 chr5D 472995656 472998375 2719 True 751.5 1483 90.129500 763 3220 4 chr5D.!!$R1 2457
2 TraesCS5A01G398800 chr5B 580288054 580291897 3843 True 972.0 1471 83.319333 245 3238 3 chr5B.!!$R4 2993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.249280 GGGGAGGTTGCGTTTGTTTG 60.249 55.0 0.0 0.0 0.00 2.93 F
162 163 0.321996 AGTTCTTCGTTCCTCCTGGC 59.678 55.0 0.0 0.0 0.00 4.85 F
1446 2287 0.438830 GGCGTTTTGCTAGTGTCGAG 59.561 55.0 0.0 0.0 45.43 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 2334 0.040067 CTCCAGAGCAAAACGCCAAC 60.040 55.0 0.00 0.00 44.04 3.77 R
1559 2415 0.602638 AAATGCAAGCGACGTCCTCA 60.603 50.0 10.58 4.21 0.00 3.86 R
3290 4537 0.107456 CACTCTTGGTGCCTGTGTCT 59.893 55.0 0.00 0.00 39.22 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.003788 CGTGCCCGTGGGTTCTCT 62.004 66.667 6.82 0.00 37.65 3.10
35 36 2.047179 GTGCCCGTGGGTTCTCTC 60.047 66.667 6.82 0.00 37.65 3.20
36 37 3.319198 TGCCCGTGGGTTCTCTCC 61.319 66.667 6.82 0.00 37.65 3.71
38 39 3.400054 CCCGTGGGTTCTCTCCCC 61.400 72.222 0.00 0.00 46.48 4.81
39 40 3.400054 CCGTGGGTTCTCTCCCCC 61.400 72.222 0.00 0.00 46.48 5.40
40 41 2.284699 CGTGGGTTCTCTCCCCCT 60.285 66.667 0.00 0.00 46.48 4.79
41 42 2.359967 CGTGGGTTCTCTCCCCCTC 61.360 68.421 0.00 0.00 46.48 4.30
42 43 1.996187 GTGGGTTCTCTCCCCCTCC 60.996 68.421 0.00 0.00 46.48 4.30
43 44 2.764547 GGGTTCTCTCCCCCTCCG 60.765 72.222 0.00 0.00 41.54 4.63
44 45 3.471806 GGTTCTCTCCCCCTCCGC 61.472 72.222 0.00 0.00 0.00 5.54
45 46 3.471806 GTTCTCTCCCCCTCCGCC 61.472 72.222 0.00 0.00 0.00 6.13
74 75 4.815973 CGATGGGAGGGTGGGGGA 62.816 72.222 0.00 0.00 0.00 4.81
75 76 2.286885 GATGGGAGGGTGGGGGAA 60.287 66.667 0.00 0.00 0.00 3.97
76 77 2.617215 ATGGGAGGGTGGGGGAAC 60.617 66.667 0.00 0.00 0.00 3.62
89 90 4.466898 GGAACCCCGGGTCTTAGA 57.533 61.111 21.85 0.00 33.12 2.10
90 91 2.926539 GGAACCCCGGGTCTTAGAT 58.073 57.895 21.85 0.00 33.12 1.98
91 92 0.757512 GGAACCCCGGGTCTTAGATC 59.242 60.000 21.85 7.59 33.12 2.75
92 93 1.691801 GGAACCCCGGGTCTTAGATCT 60.692 57.143 21.85 0.00 33.12 2.75
93 94 2.117051 GAACCCCGGGTCTTAGATCTT 58.883 52.381 21.85 0.00 33.12 2.40
94 95 2.265526 ACCCCGGGTCTTAGATCTTT 57.734 50.000 21.85 0.00 0.00 2.52
95 96 2.558974 ACCCCGGGTCTTAGATCTTTT 58.441 47.619 21.85 0.00 0.00 2.27
96 97 2.917600 ACCCCGGGTCTTAGATCTTTTT 59.082 45.455 21.85 0.00 0.00 1.94
110 111 4.688770 TTTTTGGGGAGGTTGCGT 57.311 50.000 0.00 0.00 0.00 5.24
111 112 2.903404 TTTTTGGGGAGGTTGCGTT 58.097 47.368 0.00 0.00 0.00 4.84
112 113 1.196012 TTTTTGGGGAGGTTGCGTTT 58.804 45.000 0.00 0.00 0.00 3.60
113 114 0.461961 TTTTGGGGAGGTTGCGTTTG 59.538 50.000 0.00 0.00 0.00 2.93
114 115 0.684805 TTTGGGGAGGTTGCGTTTGT 60.685 50.000 0.00 0.00 0.00 2.83
115 116 0.684805 TTGGGGAGGTTGCGTTTGTT 60.685 50.000 0.00 0.00 0.00 2.83
116 117 0.684805 TGGGGAGGTTGCGTTTGTTT 60.685 50.000 0.00 0.00 0.00 2.83
117 118 0.249280 GGGGAGGTTGCGTTTGTTTG 60.249 55.000 0.00 0.00 0.00 2.93
118 119 0.458260 GGGAGGTTGCGTTTGTTTGT 59.542 50.000 0.00 0.00 0.00 2.83
119 120 1.134936 GGGAGGTTGCGTTTGTTTGTT 60.135 47.619 0.00 0.00 0.00 2.83
120 121 2.190161 GGAGGTTGCGTTTGTTTGTTC 58.810 47.619 0.00 0.00 0.00 3.18
121 122 2.159296 GGAGGTTGCGTTTGTTTGTTCT 60.159 45.455 0.00 0.00 0.00 3.01
122 123 3.105937 GAGGTTGCGTTTGTTTGTTCTC 58.894 45.455 0.00 0.00 0.00 2.87
123 124 1.843753 GGTTGCGTTTGTTTGTTCTCG 59.156 47.619 0.00 0.00 0.00 4.04
124 125 2.511879 GTTGCGTTTGTTTGTTCTCGT 58.488 42.857 0.00 0.00 0.00 4.18
125 126 2.166741 TGCGTTTGTTTGTTCTCGTG 57.833 45.000 0.00 0.00 0.00 4.35
126 127 1.202087 TGCGTTTGTTTGTTCTCGTGG 60.202 47.619 0.00 0.00 0.00 4.94
127 128 1.062880 GCGTTTGTTTGTTCTCGTGGA 59.937 47.619 0.00 0.00 0.00 4.02
128 129 2.286772 GCGTTTGTTTGTTCTCGTGGAT 60.287 45.455 0.00 0.00 0.00 3.41
129 130 3.541711 CGTTTGTTTGTTCTCGTGGATC 58.458 45.455 0.00 0.00 0.00 3.36
130 131 3.247648 CGTTTGTTTGTTCTCGTGGATCT 59.752 43.478 0.00 0.00 0.00 2.75
131 132 4.608445 CGTTTGTTTGTTCTCGTGGATCTC 60.608 45.833 0.00 0.00 0.00 2.75
132 133 3.040147 TGTTTGTTCTCGTGGATCTCC 57.960 47.619 0.00 0.00 0.00 3.71
133 134 2.367241 TGTTTGTTCTCGTGGATCTCCA 59.633 45.455 0.00 0.00 45.30 3.86
153 154 3.753294 ACATCAGGTGAGTTCTTCGTT 57.247 42.857 0.00 0.00 0.00 3.85
154 155 3.654414 ACATCAGGTGAGTTCTTCGTTC 58.346 45.455 0.00 0.00 0.00 3.95
155 156 2.814280 TCAGGTGAGTTCTTCGTTCC 57.186 50.000 0.00 0.00 0.00 3.62
156 157 2.317040 TCAGGTGAGTTCTTCGTTCCT 58.683 47.619 0.00 0.00 0.00 3.36
157 158 2.296471 TCAGGTGAGTTCTTCGTTCCTC 59.704 50.000 0.00 0.00 0.00 3.71
158 159 1.619332 AGGTGAGTTCTTCGTTCCTCC 59.381 52.381 0.00 0.00 0.00 4.30
159 160 1.619332 GGTGAGTTCTTCGTTCCTCCT 59.381 52.381 0.00 0.00 0.00 3.69
160 161 2.610727 GGTGAGTTCTTCGTTCCTCCTG 60.611 54.545 0.00 0.00 0.00 3.86
161 162 1.618837 TGAGTTCTTCGTTCCTCCTGG 59.381 52.381 0.00 0.00 0.00 4.45
162 163 0.321996 AGTTCTTCGTTCCTCCTGGC 59.678 55.000 0.00 0.00 0.00 4.85
163 164 1.014564 GTTCTTCGTTCCTCCTGGCG 61.015 60.000 0.00 0.00 0.00 5.69
164 165 2.125512 CTTCGTTCCTCCTGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
165 166 2.920912 TTCGTTCCTCCTGGCGGT 60.921 61.111 2.05 0.00 0.00 5.68
166 167 2.837371 CTTCGTTCCTCCTGGCGGTC 62.837 65.000 2.05 0.00 0.00 4.79
167 168 4.796231 CGTTCCTCCTGGCGGTCG 62.796 72.222 2.05 5.75 0.00 4.79
168 169 4.452733 GTTCCTCCTGGCGGTCGG 62.453 72.222 2.05 0.00 0.00 4.79
182 183 4.314440 TCGGCGTGGCTGCTCTTT 62.314 61.111 6.85 0.00 34.49 2.52
183 184 4.093952 CGGCGTGGCTGCTCTTTG 62.094 66.667 0.00 0.00 34.52 2.77
184 185 2.980233 GGCGTGGCTGCTCTTTGT 60.980 61.111 0.00 0.00 34.52 2.83
185 186 2.558313 GCGTGGCTGCTCTTTGTC 59.442 61.111 0.00 0.00 0.00 3.18
186 187 2.856032 CGTGGCTGCTCTTTGTCG 59.144 61.111 0.00 0.00 0.00 4.35
187 188 1.664649 CGTGGCTGCTCTTTGTCGA 60.665 57.895 0.00 0.00 0.00 4.20
188 189 1.621301 CGTGGCTGCTCTTTGTCGAG 61.621 60.000 0.00 0.00 0.00 4.04
232 233 2.891191 TTTATCCCTGCCTTTTCGGT 57.109 45.000 0.00 0.00 34.25 4.69
233 234 2.413310 TTATCCCTGCCTTTTCGGTC 57.587 50.000 0.00 0.00 34.25 4.79
234 235 1.580059 TATCCCTGCCTTTTCGGTCT 58.420 50.000 0.00 0.00 34.25 3.85
235 236 0.698818 ATCCCTGCCTTTTCGGTCTT 59.301 50.000 0.00 0.00 34.25 3.01
236 237 0.476771 TCCCTGCCTTTTCGGTCTTT 59.523 50.000 0.00 0.00 34.25 2.52
237 238 1.133606 TCCCTGCCTTTTCGGTCTTTT 60.134 47.619 0.00 0.00 34.25 2.27
238 239 1.686587 CCCTGCCTTTTCGGTCTTTTT 59.313 47.619 0.00 0.00 34.25 1.94
339 350 6.429791 TGTATATGTCAACAACATTTCCCG 57.570 37.500 0.00 0.00 46.73 5.14
343 354 2.616376 TGTCAACAACATTTCCCGAGTG 59.384 45.455 0.00 0.00 31.20 3.51
347 358 0.950836 CAACATTTCCCGAGTGCACA 59.049 50.000 21.04 0.00 0.00 4.57
352 363 3.270027 CATTTCCCGAGTGCACATCTAA 58.730 45.455 21.04 5.65 0.00 2.10
406 417 4.686191 AATGCATGGTCAACCTTTTTCA 57.314 36.364 0.00 0.00 36.82 2.69
413 424 6.751888 GCATGGTCAACCTTTTTCATATACAC 59.248 38.462 0.10 0.00 36.82 2.90
515 535 8.633075 CATTTTAATAAATGCTTGGTCGACAT 57.367 30.769 18.91 0.00 42.85 3.06
529 549 7.792048 GCTTGGTCGACATTTTTCAAATAAAAC 59.208 33.333 18.91 0.00 30.45 2.43
530 550 8.703604 TTGGTCGACATTTTTCAAATAAAACA 57.296 26.923 18.91 0.00 30.45 2.83
531 551 8.703604 TGGTCGACATTTTTCAAATAAAACAA 57.296 26.923 18.91 0.00 30.45 2.83
532 552 9.319143 TGGTCGACATTTTTCAAATAAAACAAT 57.681 25.926 18.91 0.00 30.45 2.71
627 647 5.881637 TTTTTCAAGCGCTCAAATAACAC 57.118 34.783 12.06 0.00 0.00 3.32
630 650 4.145876 TCAAGCGCTCAAATAACACTTG 57.854 40.909 12.06 0.00 35.51 3.16
641 661 7.275560 GCTCAAATAACACTTGTCAAACACTTT 59.724 33.333 0.00 0.00 0.00 2.66
647 667 7.961325 AACACTTGTCAAACACTTTTTCAAT 57.039 28.000 0.00 0.00 0.00 2.57
757 798 8.480643 AATATGAGACGAAAAGAGTAAACAGG 57.519 34.615 0.00 0.00 0.00 4.00
762 814 7.334921 TGAGACGAAAAGAGTAAACAGGAAAAA 59.665 33.333 0.00 0.00 0.00 1.94
855 919 0.609406 TGGCGAGATATAGAGGCGCT 60.609 55.000 7.64 0.00 46.17 5.92
875 939 1.065709 TCGTTGGAGATGCCCTAAACC 60.066 52.381 0.00 0.00 34.97 3.27
989 1809 1.226435 CCGAAGCGACCGAAGAGAG 60.226 63.158 0.00 0.00 0.00 3.20
1003 1830 3.767711 GAAGAGAGGAAACCCCAAATGT 58.232 45.455 0.00 0.00 37.41 2.71
1004 1831 3.903530 AGAGAGGAAACCCCAAATGTT 57.096 42.857 0.00 0.00 37.41 2.71
1358 2197 1.362355 CCAGGTTGTTCGTTTGGCC 59.638 57.895 0.00 0.00 0.00 5.36
1396 2235 2.939103 GGATGTGAAAGATGAAGTCGGG 59.061 50.000 0.00 0.00 0.00 5.14
1398 2237 3.981071 TGTGAAAGATGAAGTCGGGAT 57.019 42.857 0.00 0.00 0.00 3.85
1446 2287 0.438830 GGCGTTTTGCTAGTGTCGAG 59.561 55.000 0.00 0.00 45.43 4.04
1488 2329 1.529865 GCGTTCAGGACAGGTGTAAAC 59.470 52.381 0.00 0.00 0.00 2.01
1489 2330 2.805657 GCGTTCAGGACAGGTGTAAACT 60.806 50.000 0.00 0.00 0.00 2.66
1490 2331 2.800544 CGTTCAGGACAGGTGTAAACTG 59.199 50.000 0.00 0.00 41.64 3.16
1509 2365 1.199624 GTTGTTGGCGTTTTGCTCTG 58.800 50.000 0.00 0.00 45.43 3.35
1513 2369 1.172180 TTGGCGTTTTGCTCTGGAGG 61.172 55.000 0.00 0.00 45.43 4.30
1530 2386 3.503363 GCGCCTCACTGTCCATGC 61.503 66.667 0.00 0.00 0.00 4.06
1559 2415 4.838986 AGATGTAGAAGCCCGGTGTATAAT 59.161 41.667 0.00 0.00 0.00 1.28
1610 2571 1.198637 ACTTCTTAGAACGTCCCGTCG 59.801 52.381 0.00 0.00 39.99 5.12
1643 2604 2.238942 CTGATATGCAGCGTTGGGTA 57.761 50.000 0.16 0.00 37.90 3.69
1671 2632 3.488721 GCTGATGCATGTGGAATGTTCTC 60.489 47.826 2.46 0.00 39.41 2.87
1672 2633 3.688235 TGATGCATGTGGAATGTTCTCA 58.312 40.909 2.46 0.00 0.00 3.27
1692 2653 2.301296 CACTCTTGTCTGATCCCAGTGT 59.699 50.000 0.00 0.00 41.16 3.55
1701 2662 6.484288 TGTCTGATCCCAGTGTAAATTGATT 58.516 36.000 0.00 0.00 41.16 2.57
1706 2667 7.961351 TGATCCCAGTGTAAATTGATTTGTTT 58.039 30.769 0.00 0.00 0.00 2.83
1732 2693 8.621532 TTTCTATCTGCTTGTGTTAAGAACAT 57.378 30.769 0.00 0.00 44.35 2.71
1741 2702 8.791675 TGCTTGTGTTAAGAACATATGATTTGA 58.208 29.630 10.38 0.00 44.35 2.69
1757 2718 3.472283 TTTGATGCCACATTTTGCTGT 57.528 38.095 0.00 0.00 0.00 4.40
1779 2740 0.871722 TGTGTTGCACATCGGTTAGC 59.128 50.000 0.00 0.00 39.62 3.09
1904 2981 4.106197 GTGGCATTTGTAAACACGTTGAA 58.894 39.130 0.00 0.00 0.00 2.69
1945 3022 8.000780 AGTTAATTTCTAGATTCAATGTGGCC 57.999 34.615 0.00 0.00 0.00 5.36
1990 3067 0.029834 GAATGGCGGTATGCTTGCAG 59.970 55.000 0.87 0.00 45.43 4.41
1999 3076 5.760253 GGCGGTATGCTTGCAGAATATATAT 59.240 40.000 0.87 0.00 45.43 0.86
2000 3077 6.293081 GGCGGTATGCTTGCAGAATATATATG 60.293 42.308 0.87 0.00 45.43 1.78
2041 3118 4.768448 AGAGTGCATGGTTGATTTGATGAA 59.232 37.500 0.00 0.00 0.00 2.57
2043 3120 4.525487 AGTGCATGGTTGATTTGATGAAGT 59.475 37.500 0.00 0.00 0.00 3.01
2044 3121 5.711506 AGTGCATGGTTGATTTGATGAAGTA 59.288 36.000 0.00 0.00 0.00 2.24
2045 3122 6.379133 AGTGCATGGTTGATTTGATGAAGTAT 59.621 34.615 0.00 0.00 0.00 2.12
2046 3123 7.037438 GTGCATGGTTGATTTGATGAAGTATT 58.963 34.615 0.00 0.00 0.00 1.89
2047 3124 7.546667 GTGCATGGTTGATTTGATGAAGTATTT 59.453 33.333 0.00 0.00 0.00 1.40
2048 3125 8.747471 TGCATGGTTGATTTGATGAAGTATTTA 58.253 29.630 0.00 0.00 0.00 1.40
2073 3155 7.624360 TGTTCAAACTTCAGACACATTAAGT 57.376 32.000 0.00 0.00 33.72 2.24
2099 3181 6.688578 ACTCGTCATACAACTATTTGAGTGT 58.311 36.000 0.00 0.00 38.87 3.55
2100 3182 6.586463 ACTCGTCATACAACTATTTGAGTGTG 59.414 38.462 0.00 0.00 38.87 3.82
2101 3183 6.683715 TCGTCATACAACTATTTGAGTGTGA 58.316 36.000 0.00 0.00 38.87 3.58
2102 3184 7.149307 TCGTCATACAACTATTTGAGTGTGAA 58.851 34.615 0.00 0.00 38.87 3.18
2103 3185 7.328493 TCGTCATACAACTATTTGAGTGTGAAG 59.672 37.037 0.00 0.00 38.87 3.02
2104 3186 7.116376 CGTCATACAACTATTTGAGTGTGAAGT 59.884 37.037 0.00 0.00 38.87 3.01
2105 3187 8.223769 GTCATACAACTATTTGAGTGTGAAGTG 58.776 37.037 0.00 0.00 38.87 3.16
2106 3188 7.931407 TCATACAACTATTTGAGTGTGAAGTGT 59.069 33.333 0.00 0.00 38.87 3.55
2122 3204 6.712095 TGTGAAGTGTATGAGCTTTTCATTCT 59.288 34.615 0.00 0.00 44.14 2.40
2178 3260 5.973899 TGCAGTAAATGTAGGATTTGCAA 57.026 34.783 0.00 0.00 0.00 4.08
2271 3436 1.340991 TGCTATTTTCCAGGACCCTGC 60.341 52.381 10.50 0.00 42.35 4.85
2320 3485 4.950744 CTGAAAGCCCTGTTTGCG 57.049 55.556 0.00 0.00 0.00 4.85
2406 3571 0.254178 TGAAGCCTCTTCCATGGAGC 59.746 55.000 15.53 14.85 0.00 4.70
2408 3573 0.034670 AAGCCTCTTCCATGGAGCAC 60.035 55.000 21.84 9.59 0.00 4.40
2418 3583 1.478510 CCATGGAGCACTCGAGTTAGT 59.521 52.381 17.26 2.65 0.00 2.24
2542 3708 3.847780 TGTTAGTTTACCCCTGGCAGTAT 59.152 43.478 14.43 0.51 0.00 2.12
2599 3765 2.479837 CTTGCAGACTCGGTTTGTGTA 58.520 47.619 0.00 0.00 0.00 2.90
2620 3786 2.503331 TGAATAGCAAGTGGTGTGGTG 58.497 47.619 0.00 0.00 0.00 4.17
2706 3872 0.396435 TCGTGACTGGCAAATCCACT 59.604 50.000 0.00 0.00 40.72 4.00
2707 3873 1.621317 TCGTGACTGGCAAATCCACTA 59.379 47.619 0.00 0.00 40.72 2.74
2734 3900 6.643388 ACTGAGCACACAATATATTCAGACA 58.357 36.000 12.96 1.33 35.68 3.41
2806 3989 3.243201 CGATCATTCAGAGACACGATGGA 60.243 47.826 0.00 0.00 0.00 3.41
2811 3994 2.446435 TCAGAGACACGATGGACATGA 58.554 47.619 0.00 0.00 0.00 3.07
2821 4004 1.028330 ATGGACATGAAGCTGTGCCG 61.028 55.000 0.00 0.00 36.72 5.69
2907 4145 3.397482 GCATTAGCTACATCTGAGGGTG 58.603 50.000 0.00 0.00 37.91 4.61
2911 4149 0.103208 GCTACATCTGAGGGTGGACG 59.897 60.000 0.00 0.00 0.00 4.79
2914 4152 0.972983 ACATCTGAGGGTGGACGGAG 60.973 60.000 0.00 0.00 0.00 4.63
2932 4170 3.426568 GCTTGGGAGTGCAGTCGC 61.427 66.667 27.00 27.00 39.24 5.19
2943 4181 3.141488 CAGTCGCTAGTCGGGCCT 61.141 66.667 0.84 0.00 39.05 5.19
2961 4199 3.481453 GCCTTCTTCTTCAACTCTGGTT 58.519 45.455 0.00 0.00 35.86 3.67
3008 4247 1.683790 CGCGGCGAGTTTCCTGTTAG 61.684 60.000 19.16 0.00 0.00 2.34
3018 4257 2.994578 GTTTCCTGTTAGTTCCTCGAGC 59.005 50.000 6.99 0.00 0.00 5.03
3052 4291 2.487372 CTCTGCCTGCCTTTTCTTCTTC 59.513 50.000 0.00 0.00 0.00 2.87
3110 4352 2.133281 TGCCAAGATCAACCTGATGG 57.867 50.000 0.00 0.00 37.20 3.51
3111 4353 0.743097 GCCAAGATCAACCTGATGGC 59.257 55.000 4.48 4.48 41.19 4.40
3112 4354 1.684248 GCCAAGATCAACCTGATGGCT 60.684 52.381 10.97 0.00 43.29 4.75
3158 4403 6.239261 CCAGCTAGAATGATCTCACTACATGT 60.239 42.308 2.69 2.69 37.10 3.21
3213 4458 6.882610 TGGATACATGGCATTGTTAGATTC 57.117 37.500 0.00 0.00 46.17 2.52
3220 4465 7.934457 ACATGGCATTGTTAGATTCATTAGAC 58.066 34.615 0.00 0.00 0.00 2.59
3238 4485 3.366396 AGACAGTACAGTATGGAGGTGG 58.634 50.000 0.00 0.00 43.62 4.61
3239 4486 2.431057 GACAGTACAGTATGGAGGTGGG 59.569 54.545 0.00 0.00 43.62 4.61
3240 4487 1.139058 CAGTACAGTATGGAGGTGGGC 59.861 57.143 0.00 0.00 43.62 5.36
3241 4488 0.468648 GTACAGTATGGAGGTGGGCC 59.531 60.000 0.00 0.00 43.62 5.80
3242 4489 0.693092 TACAGTATGGAGGTGGGCCC 60.693 60.000 17.59 17.59 43.62 5.80
3243 4490 2.368329 AGTATGGAGGTGGGCCCC 60.368 66.667 22.27 10.91 34.57 5.80
3244 4491 3.499029 GTATGGAGGTGGGCCCCC 61.499 72.222 22.27 20.35 34.57 5.40
3273 4520 4.576330 AAAAAGAGGTATGGAGGTGAGG 57.424 45.455 0.00 0.00 0.00 3.86
3274 4521 1.501582 AAGAGGTATGGAGGTGAGGC 58.498 55.000 0.00 0.00 0.00 4.70
3275 4522 0.399233 AGAGGTATGGAGGTGAGGCC 60.399 60.000 0.00 0.00 37.58 5.19
3285 4532 3.448267 GGTGAGGCCTTAACGGTAC 57.552 57.895 6.77 0.00 34.25 3.34
3286 4533 0.609662 GGTGAGGCCTTAACGGTACA 59.390 55.000 6.77 0.00 34.25 2.90
3287 4534 1.002315 GGTGAGGCCTTAACGGTACAA 59.998 52.381 6.77 0.00 34.25 2.41
3288 4535 2.550639 GGTGAGGCCTTAACGGTACAAA 60.551 50.000 6.77 0.00 34.25 2.83
3289 4536 3.340928 GTGAGGCCTTAACGGTACAAAT 58.659 45.455 6.77 0.00 34.25 2.32
3290 4537 4.506758 GTGAGGCCTTAACGGTACAAATA 58.493 43.478 6.77 0.00 34.25 1.40
3291 4538 4.569564 GTGAGGCCTTAACGGTACAAATAG 59.430 45.833 6.77 0.00 34.25 1.73
3292 4539 4.467082 TGAGGCCTTAACGGTACAAATAGA 59.533 41.667 6.77 0.00 34.25 1.98
3293 4540 4.763073 AGGCCTTAACGGTACAAATAGAC 58.237 43.478 0.00 0.00 34.25 2.59
3294 4541 4.223477 AGGCCTTAACGGTACAAATAGACA 59.777 41.667 0.00 0.00 34.25 3.41
3295 4542 4.330894 GGCCTTAACGGTACAAATAGACAC 59.669 45.833 0.00 0.00 34.25 3.67
3296 4543 4.931002 GCCTTAACGGTACAAATAGACACA 59.069 41.667 0.00 0.00 34.25 3.72
3297 4544 5.063060 GCCTTAACGGTACAAATAGACACAG 59.937 44.000 0.00 0.00 34.25 3.66
3298 4545 5.579511 CCTTAACGGTACAAATAGACACAGG 59.420 44.000 0.00 0.00 0.00 4.00
3299 4546 2.968675 ACGGTACAAATAGACACAGGC 58.031 47.619 0.00 0.00 0.00 4.85
3300 4547 2.300723 ACGGTACAAATAGACACAGGCA 59.699 45.455 0.00 0.00 0.00 4.75
3301 4548 2.671396 CGGTACAAATAGACACAGGCAC 59.329 50.000 0.00 0.00 0.00 5.01
3302 4549 3.007635 GGTACAAATAGACACAGGCACC 58.992 50.000 0.00 0.00 0.00 5.01
3303 4550 2.949177 ACAAATAGACACAGGCACCA 57.051 45.000 0.00 0.00 0.00 4.17
3304 4551 3.222173 ACAAATAGACACAGGCACCAA 57.778 42.857 0.00 0.00 0.00 3.67
3305 4552 3.149196 ACAAATAGACACAGGCACCAAG 58.851 45.455 0.00 0.00 0.00 3.61
3306 4553 3.181445 ACAAATAGACACAGGCACCAAGA 60.181 43.478 0.00 0.00 0.00 3.02
3307 4554 3.340814 AATAGACACAGGCACCAAGAG 57.659 47.619 0.00 0.00 0.00 2.85
3308 4555 1.717032 TAGACACAGGCACCAAGAGT 58.283 50.000 0.00 0.00 0.00 3.24
3322 4569 4.811557 CACCAAGAGTGCCTTTATACTAGC 59.188 45.833 0.00 0.00 40.28 3.42
3323 4570 4.717280 ACCAAGAGTGCCTTTATACTAGCT 59.283 41.667 0.00 0.00 31.42 3.32
3324 4571 5.163395 ACCAAGAGTGCCTTTATACTAGCTC 60.163 44.000 0.00 0.00 31.42 4.09
3325 4572 5.293560 CAAGAGTGCCTTTATACTAGCTCC 58.706 45.833 0.00 0.00 31.42 4.70
3326 4573 3.570550 AGAGTGCCTTTATACTAGCTCCG 59.429 47.826 0.00 0.00 0.00 4.63
3327 4574 2.628657 AGTGCCTTTATACTAGCTCCGG 59.371 50.000 0.00 0.00 0.00 5.14
3328 4575 1.343465 TGCCTTTATACTAGCTCCGGC 59.657 52.381 0.00 0.00 36.85 6.13
3329 4576 1.343465 GCCTTTATACTAGCTCCGGCA 59.657 52.381 0.00 0.00 41.70 5.69
3330 4577 2.866855 GCCTTTATACTAGCTCCGGCAC 60.867 54.545 0.00 0.00 41.70 5.01
3331 4578 2.364324 CCTTTATACTAGCTCCGGCACA 59.636 50.000 0.00 0.00 41.70 4.57
3332 4579 3.381949 CTTTATACTAGCTCCGGCACAC 58.618 50.000 0.00 0.00 41.70 3.82
3333 4580 2.061509 TATACTAGCTCCGGCACACA 57.938 50.000 0.00 0.00 41.70 3.72
3334 4581 0.460311 ATACTAGCTCCGGCACACAC 59.540 55.000 0.00 0.00 41.70 3.82
3335 4582 0.611062 TACTAGCTCCGGCACACACT 60.611 55.000 0.00 0.00 41.70 3.55
3336 4583 1.293498 CTAGCTCCGGCACACACTT 59.707 57.895 0.00 0.00 41.70 3.16
3337 4584 1.005037 TAGCTCCGGCACACACTTG 60.005 57.895 0.00 0.00 41.70 3.16
3338 4585 1.468506 TAGCTCCGGCACACACTTGA 61.469 55.000 0.00 0.00 41.70 3.02
3339 4586 2.320587 GCTCCGGCACACACTTGAG 61.321 63.158 0.00 0.00 38.54 3.02
3340 4587 2.280797 TCCGGCACACACTTGAGC 60.281 61.111 0.00 0.00 38.51 4.26
3341 4588 2.281070 CCGGCACACACTTGAGCT 60.281 61.111 0.00 0.00 39.16 4.09
3342 4589 2.610694 CCGGCACACACTTGAGCTG 61.611 63.158 0.00 0.00 43.34 4.24
3343 4590 1.889105 CGGCACACACTTGAGCTGT 60.889 57.895 0.00 0.00 39.97 4.40
3344 4591 1.439353 CGGCACACACTTGAGCTGTT 61.439 55.000 0.00 0.00 39.97 3.16
3345 4592 0.740737 GGCACACACTTGAGCTGTTT 59.259 50.000 0.00 0.00 39.16 2.83
3346 4593 1.268743 GGCACACACTTGAGCTGTTTC 60.269 52.381 0.00 0.00 39.16 2.78
3347 4594 1.672881 GCACACACTTGAGCTGTTTCT 59.327 47.619 0.00 0.00 36.48 2.52
3348 4595 2.286654 GCACACACTTGAGCTGTTTCTC 60.287 50.000 0.00 0.00 36.48 2.87
3349 4596 2.033407 CACACACTTGAGCTGTTTCTCG 60.033 50.000 0.00 0.00 35.90 4.04
3350 4597 2.205074 CACACTTGAGCTGTTTCTCGT 58.795 47.619 0.00 0.00 35.90 4.18
3351 4598 3.181479 ACACACTTGAGCTGTTTCTCGTA 60.181 43.478 0.00 0.00 35.90 3.43
3352 4599 3.182572 CACACTTGAGCTGTTTCTCGTAC 59.817 47.826 0.00 0.00 35.90 3.67
3353 4600 3.068307 ACACTTGAGCTGTTTCTCGTACT 59.932 43.478 0.00 0.00 35.90 2.73
3354 4601 4.051922 CACTTGAGCTGTTTCTCGTACTT 58.948 43.478 0.00 0.00 35.90 2.24
3355 4602 4.508124 CACTTGAGCTGTTTCTCGTACTTT 59.492 41.667 0.00 0.00 35.90 2.66
3356 4603 5.006746 CACTTGAGCTGTTTCTCGTACTTTT 59.993 40.000 0.00 0.00 35.90 2.27
3357 4604 5.006746 ACTTGAGCTGTTTCTCGTACTTTTG 59.993 40.000 0.00 0.00 35.90 2.44
3358 4605 3.247648 TGAGCTGTTTCTCGTACTTTTGC 59.752 43.478 0.00 0.00 35.90 3.68
3359 4606 2.221055 AGCTGTTTCTCGTACTTTTGCG 59.779 45.455 0.00 0.00 0.00 4.85
3360 4607 2.033151 GCTGTTTCTCGTACTTTTGCGT 60.033 45.455 0.00 0.00 31.89 5.24
3361 4608 3.182972 GCTGTTTCTCGTACTTTTGCGTA 59.817 43.478 0.00 0.00 31.89 4.42
3362 4609 4.663389 GCTGTTTCTCGTACTTTTGCGTAG 60.663 45.833 0.00 0.00 31.89 3.51
3363 4610 4.362279 TGTTTCTCGTACTTTTGCGTAGT 58.638 39.130 0.00 0.00 31.89 2.73
3364 4611 4.442073 TGTTTCTCGTACTTTTGCGTAGTC 59.558 41.667 0.00 0.00 31.89 2.59
3365 4612 3.207474 TCTCGTACTTTTGCGTAGTCC 57.793 47.619 0.00 0.00 31.89 3.85
3366 4613 2.553602 TCTCGTACTTTTGCGTAGTCCA 59.446 45.455 0.00 0.00 31.89 4.02
3367 4614 3.192001 TCTCGTACTTTTGCGTAGTCCAT 59.808 43.478 0.00 0.00 31.89 3.41
3368 4615 3.247442 TCGTACTTTTGCGTAGTCCATG 58.753 45.455 0.00 0.00 31.89 3.66
3369 4616 2.991190 CGTACTTTTGCGTAGTCCATGT 59.009 45.455 0.00 0.00 0.00 3.21
3370 4617 4.082841 TCGTACTTTTGCGTAGTCCATGTA 60.083 41.667 0.00 0.00 31.89 2.29
3371 4618 4.030977 CGTACTTTTGCGTAGTCCATGTAC 59.969 45.833 0.00 0.00 0.00 2.90
3372 4619 3.332034 ACTTTTGCGTAGTCCATGTACC 58.668 45.455 0.00 0.00 0.00 3.34
3373 4620 2.389962 TTTGCGTAGTCCATGTACCC 57.610 50.000 0.00 0.00 0.00 3.69
3374 4621 0.538118 TTGCGTAGTCCATGTACCCC 59.462 55.000 0.00 0.00 0.00 4.95
3375 4622 1.332144 TGCGTAGTCCATGTACCCCC 61.332 60.000 0.00 0.00 0.00 5.40
3376 4623 1.047034 GCGTAGTCCATGTACCCCCT 61.047 60.000 0.00 0.00 0.00 4.79
3377 4624 1.038280 CGTAGTCCATGTACCCCCTC 58.962 60.000 0.00 0.00 0.00 4.30
3378 4625 1.421480 GTAGTCCATGTACCCCCTCC 58.579 60.000 0.00 0.00 0.00 4.30
3379 4626 1.020462 TAGTCCATGTACCCCCTCCA 58.980 55.000 0.00 0.00 0.00 3.86
3380 4627 0.326618 AGTCCATGTACCCCCTCCAG 60.327 60.000 0.00 0.00 0.00 3.86
3381 4628 1.692749 TCCATGTACCCCCTCCAGC 60.693 63.158 0.00 0.00 0.00 4.85
3382 4629 2.000701 CCATGTACCCCCTCCAGCA 61.001 63.158 0.00 0.00 0.00 4.41
3383 4630 1.528824 CATGTACCCCCTCCAGCAG 59.471 63.158 0.00 0.00 0.00 4.24
3384 4631 0.982852 CATGTACCCCCTCCAGCAGA 60.983 60.000 0.00 0.00 0.00 4.26
3385 4632 0.983378 ATGTACCCCCTCCAGCAGAC 60.983 60.000 0.00 0.00 0.00 3.51
3386 4633 1.612442 GTACCCCCTCCAGCAGACA 60.612 63.158 0.00 0.00 0.00 3.41
3387 4634 1.306141 TACCCCCTCCAGCAGACAG 60.306 63.158 0.00 0.00 0.00 3.51
3388 4635 4.106925 CCCCCTCCAGCAGACAGC 62.107 72.222 0.00 0.00 46.19 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.047179 GAGAGAACCCACGGGCAC 60.047 66.667 0.69 0.00 39.32 5.01
19 20 3.319198 GGAGAGAACCCACGGGCA 61.319 66.667 0.69 0.00 39.32 5.36
27 28 3.471806 GCGGAGGGGGAGAGAACC 61.472 72.222 0.00 0.00 0.00 3.62
28 29 3.471806 GGCGGAGGGGGAGAGAAC 61.472 72.222 0.00 0.00 0.00 3.01
57 58 4.815973 TCCCCCACCCTCCCATCG 62.816 72.222 0.00 0.00 0.00 3.84
58 59 2.286885 TTCCCCCACCCTCCCATC 60.287 66.667 0.00 0.00 0.00 3.51
59 60 2.617215 GTTCCCCCACCCTCCCAT 60.617 66.667 0.00 0.00 0.00 4.00
70 71 2.285592 TAAGACCCGGGGTTCCCC 60.286 66.667 27.92 16.52 41.57 4.81
71 72 0.693430 ATCTAAGACCCGGGGTTCCC 60.693 60.000 27.92 7.81 41.09 3.97
72 73 0.757512 GATCTAAGACCCGGGGTTCC 59.242 60.000 27.92 8.64 35.25 3.62
73 74 1.790818 AGATCTAAGACCCGGGGTTC 58.209 55.000 27.92 14.91 35.25 3.62
74 75 2.265526 AAGATCTAAGACCCGGGGTT 57.734 50.000 27.92 20.19 35.25 4.11
75 76 2.265526 AAAGATCTAAGACCCGGGGT 57.734 50.000 27.92 21.21 39.44 4.95
76 77 3.646736 AAAAAGATCTAAGACCCGGGG 57.353 47.619 27.92 12.73 0.00 5.73
93 94 1.134670 CAAACGCAACCTCCCCAAAAA 60.135 47.619 0.00 0.00 0.00 1.94
94 95 0.461961 CAAACGCAACCTCCCCAAAA 59.538 50.000 0.00 0.00 0.00 2.44
95 96 0.684805 ACAAACGCAACCTCCCCAAA 60.685 50.000 0.00 0.00 0.00 3.28
96 97 0.684805 AACAAACGCAACCTCCCCAA 60.685 50.000 0.00 0.00 0.00 4.12
97 98 0.684805 AAACAAACGCAACCTCCCCA 60.685 50.000 0.00 0.00 0.00 4.96
98 99 0.249280 CAAACAAACGCAACCTCCCC 60.249 55.000 0.00 0.00 0.00 4.81
99 100 0.458260 ACAAACAAACGCAACCTCCC 59.542 50.000 0.00 0.00 0.00 4.30
100 101 2.159296 AGAACAAACAAACGCAACCTCC 60.159 45.455 0.00 0.00 0.00 4.30
101 102 3.105937 GAGAACAAACAAACGCAACCTC 58.894 45.455 0.00 0.00 0.00 3.85
102 103 2.477189 CGAGAACAAACAAACGCAACCT 60.477 45.455 0.00 0.00 0.00 3.50
103 104 1.843753 CGAGAACAAACAAACGCAACC 59.156 47.619 0.00 0.00 0.00 3.77
104 105 2.275253 CACGAGAACAAACAAACGCAAC 59.725 45.455 0.00 0.00 0.00 4.17
105 106 2.510874 CACGAGAACAAACAAACGCAA 58.489 42.857 0.00 0.00 0.00 4.85
106 107 1.202087 CCACGAGAACAAACAAACGCA 60.202 47.619 0.00 0.00 0.00 5.24
107 108 1.062880 TCCACGAGAACAAACAAACGC 59.937 47.619 0.00 0.00 0.00 4.84
108 109 3.247648 AGATCCACGAGAACAAACAAACG 59.752 43.478 0.00 0.00 0.00 3.60
109 110 4.319549 GGAGATCCACGAGAACAAACAAAC 60.320 45.833 0.00 0.00 35.64 2.93
110 111 3.813166 GGAGATCCACGAGAACAAACAAA 59.187 43.478 0.00 0.00 35.64 2.83
111 112 3.181459 TGGAGATCCACGAGAACAAACAA 60.181 43.478 0.00 0.00 42.01 2.83
112 113 2.367241 TGGAGATCCACGAGAACAAACA 59.633 45.455 0.00 0.00 42.01 2.83
113 114 3.040147 TGGAGATCCACGAGAACAAAC 57.960 47.619 0.00 0.00 42.01 2.93
124 125 2.113807 CTCACCTGATGTGGAGATCCA 58.886 52.381 0.00 0.00 45.48 3.41
125 126 2.114616 ACTCACCTGATGTGGAGATCC 58.885 52.381 0.00 0.00 45.48 3.36
126 127 3.450457 AGAACTCACCTGATGTGGAGATC 59.550 47.826 0.00 0.00 45.48 2.75
127 128 3.448934 AGAACTCACCTGATGTGGAGAT 58.551 45.455 0.00 0.00 45.48 2.75
128 129 2.894731 AGAACTCACCTGATGTGGAGA 58.105 47.619 0.00 0.00 45.48 3.71
129 130 3.594134 GAAGAACTCACCTGATGTGGAG 58.406 50.000 0.00 0.00 45.48 3.86
130 131 2.029020 CGAAGAACTCACCTGATGTGGA 60.029 50.000 0.00 0.00 45.48 4.02
131 132 2.289072 ACGAAGAACTCACCTGATGTGG 60.289 50.000 0.00 0.00 45.48 4.17
132 133 3.032017 ACGAAGAACTCACCTGATGTG 57.968 47.619 0.00 0.00 46.88 3.21
133 134 3.555168 GGAACGAAGAACTCACCTGATGT 60.555 47.826 0.00 0.00 0.00 3.06
134 135 2.996621 GGAACGAAGAACTCACCTGATG 59.003 50.000 0.00 0.00 0.00 3.07
135 136 2.900546 AGGAACGAAGAACTCACCTGAT 59.099 45.455 0.00 0.00 0.00 2.90
136 137 2.296471 GAGGAACGAAGAACTCACCTGA 59.704 50.000 0.00 0.00 0.00 3.86
137 138 2.610727 GGAGGAACGAAGAACTCACCTG 60.611 54.545 0.00 0.00 0.00 4.00
138 139 1.619332 GGAGGAACGAAGAACTCACCT 59.381 52.381 0.00 0.00 0.00 4.00
139 140 1.619332 AGGAGGAACGAAGAACTCACC 59.381 52.381 0.00 0.00 0.00 4.02
140 141 2.610727 CCAGGAGGAACGAAGAACTCAC 60.611 54.545 0.00 0.00 36.89 3.51
141 142 1.618837 CCAGGAGGAACGAAGAACTCA 59.381 52.381 0.00 0.00 36.89 3.41
142 143 1.673329 GCCAGGAGGAACGAAGAACTC 60.673 57.143 0.00 0.00 36.89 3.01
143 144 0.321996 GCCAGGAGGAACGAAGAACT 59.678 55.000 0.00 0.00 36.89 3.01
144 145 1.014564 CGCCAGGAGGAACGAAGAAC 61.015 60.000 0.00 0.00 36.89 3.01
145 146 1.292223 CGCCAGGAGGAACGAAGAA 59.708 57.895 0.00 0.00 36.89 2.52
146 147 2.646175 CCGCCAGGAGGAACGAAGA 61.646 63.158 2.15 0.00 41.02 2.87
147 148 2.125512 CCGCCAGGAGGAACGAAG 60.126 66.667 2.15 0.00 41.02 3.79
148 149 2.920912 ACCGCCAGGAGGAACGAA 60.921 61.111 17.69 0.00 41.02 3.85
149 150 3.379445 GACCGCCAGGAGGAACGA 61.379 66.667 17.69 0.00 41.02 3.85
150 151 4.796231 CGACCGCCAGGAGGAACG 62.796 72.222 17.69 16.36 41.02 3.95
151 152 4.452733 CCGACCGCCAGGAGGAAC 62.453 72.222 17.69 8.53 41.02 3.62
165 166 4.314440 AAAGAGCAGCCACGCCGA 62.314 61.111 0.00 0.00 0.00 5.54
166 167 4.093952 CAAAGAGCAGCCACGCCG 62.094 66.667 0.00 0.00 0.00 6.46
167 168 2.970974 GACAAAGAGCAGCCACGCC 61.971 63.158 0.00 0.00 0.00 5.68
168 169 2.558313 GACAAAGAGCAGCCACGC 59.442 61.111 0.00 0.00 0.00 5.34
169 170 1.621301 CTCGACAAAGAGCAGCCACG 61.621 60.000 0.00 0.00 0.00 4.94
170 171 2.157421 CTCGACAAAGAGCAGCCAC 58.843 57.895 0.00 0.00 0.00 5.01
171 172 4.681421 CTCGACAAAGAGCAGCCA 57.319 55.556 0.00 0.00 0.00 4.75
211 212 3.502356 ACCGAAAAGGCAGGGATAAAAA 58.498 40.909 0.00 0.00 46.52 1.94
212 213 3.086282 GACCGAAAAGGCAGGGATAAAA 58.914 45.455 0.00 0.00 46.52 1.52
213 214 2.307686 AGACCGAAAAGGCAGGGATAAA 59.692 45.455 0.00 0.00 46.52 1.40
214 215 1.913419 AGACCGAAAAGGCAGGGATAA 59.087 47.619 0.00 0.00 46.52 1.75
215 216 1.580059 AGACCGAAAAGGCAGGGATA 58.420 50.000 0.00 0.00 46.52 2.59
216 217 0.698818 AAGACCGAAAAGGCAGGGAT 59.301 50.000 0.00 0.00 46.52 3.85
217 218 0.476771 AAAGACCGAAAAGGCAGGGA 59.523 50.000 0.00 0.00 46.52 4.20
218 219 1.328279 AAAAGACCGAAAAGGCAGGG 58.672 50.000 0.00 0.00 46.52 4.45
324 335 1.606668 GCACTCGGGAAATGTTGTTGA 59.393 47.619 0.00 0.00 0.00 3.18
336 347 2.315925 ATGTTAGATGTGCACTCGGG 57.684 50.000 19.41 0.00 0.00 5.14
337 348 4.685169 AAAATGTTAGATGTGCACTCGG 57.315 40.909 19.41 0.00 0.00 4.63
380 391 5.543507 AAAGGTTGACCATGCATTACAAA 57.456 34.783 0.00 0.00 38.89 2.83
388 399 6.751888 GTGTATATGAAAAAGGTTGACCATGC 59.248 38.462 2.56 0.00 38.89 4.06
613 633 3.536158 TGACAAGTGTTATTTGAGCGC 57.464 42.857 0.00 0.00 0.00 5.92
618 638 9.739786 GAAAAAGTGTTTGACAAGTGTTATTTG 57.260 29.630 0.00 0.00 0.00 2.32
619 639 9.482627 TGAAAAAGTGTTTGACAAGTGTTATTT 57.517 25.926 0.00 0.00 0.00 1.40
621 641 9.651913 ATTGAAAAAGTGTTTGACAAGTGTTAT 57.348 25.926 0.00 0.00 31.85 1.89
731 772 8.936864 CCTGTTTACTCTTTTCGTCTCATATTT 58.063 33.333 0.00 0.00 0.00 1.40
734 775 7.223260 TCCTGTTTACTCTTTTCGTCTCATA 57.777 36.000 0.00 0.00 0.00 2.15
737 778 6.839820 TTTCCTGTTTACTCTTTTCGTCTC 57.160 37.500 0.00 0.00 0.00 3.36
762 814 4.501400 GCAGGTCACAGCCTATTTTGTTTT 60.501 41.667 0.00 0.00 37.04 2.43
766 818 1.474077 GGCAGGTCACAGCCTATTTTG 59.526 52.381 3.33 0.00 45.11 2.44
789 841 3.385749 GATGGACCGACCCATGCGT 62.386 63.158 12.30 0.00 46.34 5.24
798 850 3.889044 GCGAGCGAGATGGACCGA 61.889 66.667 0.00 0.00 0.00 4.69
802 854 4.841617 AGGGGCGAGCGAGATGGA 62.842 66.667 0.00 0.00 0.00 3.41
855 919 1.065709 GGTTTAGGGCATCTCCAACGA 60.066 52.381 0.00 0.00 36.21 3.85
885 949 9.660544 AGGGCATCTCCACTTTTATTTTATATT 57.339 29.630 0.00 0.00 36.21 1.28
899 964 0.919710 AGGGTTTAGGGCATCTCCAC 59.080 55.000 0.00 0.00 36.21 4.02
982 1802 3.767711 ACATTTGGGGTTTCCTCTCTTC 58.232 45.455 0.00 0.00 36.20 2.87
1358 2197 9.653287 TTTCACATCCAAATCAACTAGTACTAG 57.347 33.333 25.30 25.30 39.04 2.57
1396 2235 3.931468 CCATCTCATCTTACGCATCCATC 59.069 47.826 0.00 0.00 0.00 3.51
1398 2237 2.965147 TCCATCTCATCTTACGCATCCA 59.035 45.455 0.00 0.00 0.00 3.41
1446 2287 4.421948 CAAAATCTCAGATTTGCTCCTGC 58.578 43.478 13.58 0.00 40.20 4.85
1488 2329 1.199624 GAGCAAAACGCCAACAACAG 58.800 50.000 0.00 0.00 44.04 3.16
1489 2330 0.814457 AGAGCAAAACGCCAACAACA 59.186 45.000 0.00 0.00 44.04 3.33
1490 2331 1.199624 CAGAGCAAAACGCCAACAAC 58.800 50.000 0.00 0.00 44.04 3.32
1491 2332 0.102120 CCAGAGCAAAACGCCAACAA 59.898 50.000 0.00 0.00 44.04 2.83
1493 2334 0.040067 CTCCAGAGCAAAACGCCAAC 60.040 55.000 0.00 0.00 44.04 3.77
1494 2335 1.172180 CCTCCAGAGCAAAACGCCAA 61.172 55.000 0.00 0.00 44.04 4.52
1509 2365 4.459089 GGACAGTGAGGCGCCTCC 62.459 72.222 44.85 35.71 42.09 4.30
1513 2369 3.503363 GCATGGACAGTGAGGCGC 61.503 66.667 0.00 0.00 0.00 6.53
1530 2386 1.227674 GGCTTCTACATCTGGCGGG 60.228 63.158 0.00 0.00 0.00 6.13
1559 2415 0.602638 AAATGCAAGCGACGTCCTCA 60.603 50.000 10.58 4.21 0.00 3.86
1610 2571 4.154737 TGCATATCAGCAAGACAGAAACAC 59.845 41.667 0.00 0.00 42.46 3.32
1671 2632 2.301296 ACACTGGGATCAGACAAGAGTG 59.699 50.000 0.00 0.00 43.49 3.51
1672 2633 2.614259 ACACTGGGATCAGACAAGAGT 58.386 47.619 0.00 0.00 43.49 3.24
1706 2667 8.445275 TGTTCTTAACACAAGCAGATAGAAAA 57.555 30.769 0.00 0.00 36.25 2.29
1723 2684 8.291191 TGTGGCATCAAATCATATGTTCTTAA 57.709 30.769 1.90 0.00 0.00 1.85
1732 2693 5.813157 CAGCAAAATGTGGCATCAAATCATA 59.187 36.000 0.00 0.00 0.00 2.15
1741 2702 4.247258 CACATAACAGCAAAATGTGGCAT 58.753 39.130 11.48 0.00 44.28 4.40
1779 2740 5.298197 TCTTTCGTAGACTCTGCTAAGTG 57.702 43.478 0.00 0.00 34.32 3.16
1795 2871 2.988010 TCTCATGGGACCATCTTTCG 57.012 50.000 0.00 0.00 33.90 3.46
1904 2981 7.449704 AGAAATTAACTCTGTTCAGCAAGGATT 59.550 33.333 0.00 0.00 0.00 3.01
1945 3022 2.365823 GCACAATGCAAGCAATCCG 58.634 52.632 0.00 0.00 44.26 4.18
1999 3076 6.570571 GCACTCTTCATTCACTAGTCACTACA 60.571 42.308 0.00 0.00 0.00 2.74
2000 3077 5.802956 GCACTCTTCATTCACTAGTCACTAC 59.197 44.000 0.00 0.00 0.00 2.73
2041 3118 9.337396 TGTGTCTGAAGTTTGAACATAAATACT 57.663 29.630 0.00 0.00 0.00 2.12
2047 3124 9.337396 ACTTAATGTGTCTGAAGTTTGAACATA 57.663 29.630 0.00 0.00 0.00 2.29
2048 3125 8.225603 ACTTAATGTGTCTGAAGTTTGAACAT 57.774 30.769 0.00 0.00 0.00 2.71
2051 3128 9.391006 AGTAACTTAATGTGTCTGAAGTTTGAA 57.609 29.630 4.38 0.00 41.25 2.69
2052 3129 8.958119 AGTAACTTAATGTGTCTGAAGTTTGA 57.042 30.769 4.38 0.00 41.25 2.69
2053 3130 8.004344 CGAGTAACTTAATGTGTCTGAAGTTTG 58.996 37.037 4.38 0.00 41.25 2.93
2054 3131 7.709613 ACGAGTAACTTAATGTGTCTGAAGTTT 59.290 33.333 4.38 0.00 41.25 2.66
2055 3132 7.208080 ACGAGTAACTTAATGTGTCTGAAGTT 58.792 34.615 4.47 4.47 42.96 2.66
2056 3133 6.746120 ACGAGTAACTTAATGTGTCTGAAGT 58.254 36.000 0.00 0.00 33.60 3.01
2057 3134 6.861572 TGACGAGTAACTTAATGTGTCTGAAG 59.138 38.462 0.00 0.00 0.00 3.02
2062 3144 8.371053 GTTGTATGACGAGTAACTTAATGTGTC 58.629 37.037 0.00 0.00 0.00 3.67
2073 3155 8.301720 ACACTCAAATAGTTGTATGACGAGTAA 58.698 33.333 13.44 0.00 35.76 2.24
2099 3181 7.750229 AAGAATGAAAAGCTCATACACTTCA 57.250 32.000 0.00 0.00 44.43 3.02
2100 3182 7.540055 CCAAAGAATGAAAAGCTCATACACTTC 59.460 37.037 0.00 0.00 44.43 3.01
2101 3183 7.014615 ACCAAAGAATGAAAAGCTCATACACTT 59.985 33.333 0.00 0.00 44.43 3.16
2102 3184 6.491403 ACCAAAGAATGAAAAGCTCATACACT 59.509 34.615 0.00 0.00 44.43 3.55
2103 3185 6.583806 CACCAAAGAATGAAAAGCTCATACAC 59.416 38.462 0.00 0.00 44.43 2.90
2104 3186 6.265196 ACACCAAAGAATGAAAAGCTCATACA 59.735 34.615 0.00 0.00 44.43 2.29
2105 3187 6.583806 CACACCAAAGAATGAAAAGCTCATAC 59.416 38.462 0.00 0.00 44.43 2.39
2106 3188 6.489700 TCACACCAAAGAATGAAAAGCTCATA 59.510 34.615 0.00 0.00 44.43 2.15
2122 3204 3.615155 TGTGACATCACTTCACACCAAA 58.385 40.909 12.98 0.00 46.64 3.28
2156 3238 5.242615 TGTTGCAAATCCTACATTTACTGCA 59.757 36.000 0.00 0.00 0.00 4.41
2212 3377 4.176271 GCAACTGGAAAATAGCATGTTCC 58.824 43.478 9.82 9.82 41.09 3.62
2271 3436 1.336887 ACACGATGACCTTCTTGTCCG 60.337 52.381 0.00 0.00 34.25 4.79
2320 3485 2.743928 CCAACACGCTCTCTGCCC 60.744 66.667 0.00 0.00 38.78 5.36
2367 3532 1.134521 ACGGAGTCTTGACAAAGTGCA 60.135 47.619 3.49 0.00 29.74 4.57
2406 3571 7.148289 TAGAAACCATCTACACTAACTCGAGTG 60.148 40.741 20.85 10.28 44.42 3.51
2408 3573 6.197364 AGAAACCATCTACACTAACTCGAG 57.803 41.667 11.84 11.84 36.32 4.04
2542 3708 5.809001 AGCTGTTAAGATGTTCCAGATTGA 58.191 37.500 6.43 0.00 0.00 2.57
2599 3765 3.084039 CACCACACCACTTGCTATTCAT 58.916 45.455 0.00 0.00 0.00 2.57
2620 3786 0.727398 GTGCCACGCTTAGATTCCAC 59.273 55.000 0.00 0.00 0.00 4.02
2643 3809 4.269523 GCCCTCACACCAGCCACA 62.270 66.667 0.00 0.00 0.00 4.17
2706 3872 9.665719 TCTGAATATATTGTGTGCTCAGTTTTA 57.334 29.630 1.78 0.00 32.52 1.52
2707 3873 8.454106 GTCTGAATATATTGTGTGCTCAGTTTT 58.546 33.333 1.78 0.00 32.52 2.43
2734 3900 2.494870 GCAAATTGGACAATCTCTGCCT 59.505 45.455 12.19 0.00 0.00 4.75
2769 3952 3.003394 TGATCGGCCTCAATGAAACAT 57.997 42.857 0.00 0.00 0.00 2.71
2806 3989 3.058160 GCCGGCACAGCTTCATGT 61.058 61.111 24.80 0.00 0.00 3.21
2811 3994 3.790416 TTTGAGGCCGGCACAGCTT 62.790 57.895 30.85 5.58 0.00 3.74
2885 4123 2.036475 ACCCTCAGATGTAGCTAATGCG 59.964 50.000 0.00 0.00 45.42 4.73
2890 4128 2.667470 GTCCACCCTCAGATGTAGCTA 58.333 52.381 0.00 0.00 0.00 3.32
2907 4145 3.003763 ACTCCCAAGCCTCCGTCC 61.004 66.667 0.00 0.00 0.00 4.79
2911 4149 2.045536 CTGCACTCCCAAGCCTCC 60.046 66.667 0.00 0.00 0.00 4.30
2914 4152 2.743928 CGACTGCACTCCCAAGCC 60.744 66.667 0.00 0.00 0.00 4.35
2932 4170 1.825474 TGAAGAAGAAGGCCCGACTAG 59.175 52.381 0.00 0.00 0.00 2.57
2943 4181 8.047310 AGAAAACTAACCAGAGTTGAAGAAGAA 58.953 33.333 0.00 0.00 39.62 2.52
2961 4199 7.361542 GCATTGATCAGAGCAAAGAGAAAACTA 60.362 37.037 4.94 0.00 0.00 2.24
3008 4247 2.811317 CGTGCTGGCTCGAGGAAC 60.811 66.667 15.58 1.11 35.30 3.62
3027 4266 2.432174 GAAAAGGCAGGCAGAGGGGT 62.432 60.000 0.00 0.00 0.00 4.95
3038 4277 3.884037 AGGGAAGAAGAAGAAAAGGCA 57.116 42.857 0.00 0.00 0.00 4.75
3052 4291 1.318576 AACGCCAAACTGAAGGGAAG 58.681 50.000 0.00 0.00 0.00 3.46
3120 4365 0.904865 TAGCTGGTGGTGGTCTGGAG 60.905 60.000 0.00 0.00 0.00 3.86
3125 4370 1.555075 TCATTCTAGCTGGTGGTGGTC 59.445 52.381 0.00 0.00 0.00 4.02
3194 4439 9.056005 GTCTAATGAATCTAACAATGCCATGTA 57.944 33.333 0.00 0.00 32.02 2.29
3198 4443 7.112122 ACTGTCTAATGAATCTAACAATGCCA 58.888 34.615 0.00 0.00 0.00 4.92
3213 4458 6.461648 CCACCTCCATACTGTACTGTCTAATG 60.462 46.154 8.85 7.74 0.00 1.90
3220 4465 1.139058 GCCCACCTCCATACTGTACTG 59.861 57.143 0.00 0.00 0.00 2.74
3252 4499 3.308473 GCCTCACCTCCATACCTCTTTTT 60.308 47.826 0.00 0.00 0.00 1.94
3253 4500 2.239907 GCCTCACCTCCATACCTCTTTT 59.760 50.000 0.00 0.00 0.00 2.27
3254 4501 1.840635 GCCTCACCTCCATACCTCTTT 59.159 52.381 0.00 0.00 0.00 2.52
3255 4502 1.501582 GCCTCACCTCCATACCTCTT 58.498 55.000 0.00 0.00 0.00 2.85
3256 4503 0.399233 GGCCTCACCTCCATACCTCT 60.399 60.000 0.00 0.00 34.51 3.69
3257 4504 2.137692 GGCCTCACCTCCATACCTC 58.862 63.158 0.00 0.00 34.51 3.85
3258 4505 4.401657 GGCCTCACCTCCATACCT 57.598 61.111 0.00 0.00 34.51 3.08
3267 4514 0.609662 TGTACCGTTAAGGCCTCACC 59.390 55.000 5.23 0.00 46.52 4.02
3268 4515 2.460757 TTGTACCGTTAAGGCCTCAC 57.539 50.000 5.23 5.17 46.52 3.51
3269 4516 3.706600 ATTTGTACCGTTAAGGCCTCA 57.293 42.857 5.23 0.00 46.52 3.86
3270 4517 4.807834 GTCTATTTGTACCGTTAAGGCCTC 59.192 45.833 5.23 0.00 46.52 4.70
3271 4518 4.223477 TGTCTATTTGTACCGTTAAGGCCT 59.777 41.667 0.00 0.00 46.52 5.19
3272 4519 4.330894 GTGTCTATTTGTACCGTTAAGGCC 59.669 45.833 0.00 0.00 46.52 5.19
3273 4520 4.931002 TGTGTCTATTTGTACCGTTAAGGC 59.069 41.667 0.00 0.00 46.52 4.35
3275 4522 5.063060 GCCTGTGTCTATTTGTACCGTTAAG 59.937 44.000 0.00 0.00 0.00 1.85
3276 4523 4.931002 GCCTGTGTCTATTTGTACCGTTAA 59.069 41.667 0.00 0.00 0.00 2.01
3277 4524 4.021280 TGCCTGTGTCTATTTGTACCGTTA 60.021 41.667 0.00 0.00 0.00 3.18
3278 4525 3.244284 TGCCTGTGTCTATTTGTACCGTT 60.244 43.478 0.00 0.00 0.00 4.44
3279 4526 2.300723 TGCCTGTGTCTATTTGTACCGT 59.699 45.455 0.00 0.00 0.00 4.83
3280 4527 2.671396 GTGCCTGTGTCTATTTGTACCG 59.329 50.000 0.00 0.00 0.00 4.02
3281 4528 3.007635 GGTGCCTGTGTCTATTTGTACC 58.992 50.000 0.00 0.00 0.00 3.34
3282 4529 3.670625 TGGTGCCTGTGTCTATTTGTAC 58.329 45.455 0.00 0.00 0.00 2.90
3283 4530 4.041075 TCTTGGTGCCTGTGTCTATTTGTA 59.959 41.667 0.00 0.00 0.00 2.41
3284 4531 2.949177 TGGTGCCTGTGTCTATTTGT 57.051 45.000 0.00 0.00 0.00 2.83
3285 4532 3.411446 TCTTGGTGCCTGTGTCTATTTG 58.589 45.455 0.00 0.00 0.00 2.32
3286 4533 3.073062 ACTCTTGGTGCCTGTGTCTATTT 59.927 43.478 0.00 0.00 0.00 1.40
3287 4534 2.639839 ACTCTTGGTGCCTGTGTCTATT 59.360 45.455 0.00 0.00 0.00 1.73
3288 4535 2.027745 CACTCTTGGTGCCTGTGTCTAT 60.028 50.000 0.00 0.00 39.22 1.98
3289 4536 1.344438 CACTCTTGGTGCCTGTGTCTA 59.656 52.381 0.00 0.00 39.22 2.59
3290 4537 0.107456 CACTCTTGGTGCCTGTGTCT 59.893 55.000 0.00 0.00 39.22 3.41
3291 4538 2.621763 CACTCTTGGTGCCTGTGTC 58.378 57.895 0.00 0.00 39.22 3.67
3292 4539 4.885426 CACTCTTGGTGCCTGTGT 57.115 55.556 0.00 0.00 39.22 3.72
3300 4547 4.717280 AGCTAGTATAAAGGCACTCTTGGT 59.283 41.667 0.00 0.00 38.49 3.67
3301 4548 5.283457 AGCTAGTATAAAGGCACTCTTGG 57.717 43.478 0.00 0.00 38.49 3.61
3302 4549 5.293560 GGAGCTAGTATAAAGGCACTCTTG 58.706 45.833 0.00 0.00 38.49 3.02
3303 4550 4.038162 CGGAGCTAGTATAAAGGCACTCTT 59.962 45.833 0.00 0.00 38.49 2.85
3304 4551 3.570550 CGGAGCTAGTATAAAGGCACTCT 59.429 47.826 0.00 0.00 38.49 3.24
3305 4552 3.305471 CCGGAGCTAGTATAAAGGCACTC 60.305 52.174 0.00 0.00 38.49 3.51
3306 4553 5.120172 GCCGGAGCTAGTATAAAGGCACT 62.120 52.174 5.05 0.00 42.57 4.40
3307 4554 2.866855 GCCGGAGCTAGTATAAAGGCAC 60.867 54.545 5.05 0.00 42.57 5.01
3308 4555 1.343465 GCCGGAGCTAGTATAAAGGCA 59.657 52.381 5.05 0.00 42.57 4.75
3309 4556 1.343465 TGCCGGAGCTAGTATAAAGGC 59.657 52.381 5.05 8.44 43.26 4.35
3310 4557 2.364324 TGTGCCGGAGCTAGTATAAAGG 59.636 50.000 5.05 0.00 40.80 3.11
3311 4558 3.181479 TGTGTGCCGGAGCTAGTATAAAG 60.181 47.826 5.05 0.00 40.80 1.85
3312 4559 2.761767 TGTGTGCCGGAGCTAGTATAAA 59.238 45.455 5.05 0.00 40.80 1.40
3313 4560 2.100252 GTGTGTGCCGGAGCTAGTATAA 59.900 50.000 5.05 0.00 40.80 0.98
3314 4561 1.679680 GTGTGTGCCGGAGCTAGTATA 59.320 52.381 5.05 0.00 40.80 1.47
3315 4562 0.460311 GTGTGTGCCGGAGCTAGTAT 59.540 55.000 5.05 0.00 40.80 2.12
3316 4563 0.611062 AGTGTGTGCCGGAGCTAGTA 60.611 55.000 5.05 0.00 40.80 1.82
3317 4564 1.472662 AAGTGTGTGCCGGAGCTAGT 61.473 55.000 5.05 0.00 40.80 2.57
3318 4565 1.016130 CAAGTGTGTGCCGGAGCTAG 61.016 60.000 5.05 0.00 40.80 3.42
3319 4566 1.005037 CAAGTGTGTGCCGGAGCTA 60.005 57.895 5.05 0.00 40.80 3.32
3320 4567 2.281070 CAAGTGTGTGCCGGAGCT 60.281 61.111 5.05 0.00 40.80 4.09
3321 4568 2.280797 TCAAGTGTGTGCCGGAGC 60.281 61.111 5.05 0.00 40.48 4.70
3322 4569 2.320587 GCTCAAGTGTGTGCCGGAG 61.321 63.158 5.05 0.00 38.13 4.63
3323 4570 2.280797 GCTCAAGTGTGTGCCGGA 60.281 61.111 5.05 0.00 38.13 5.14
3324 4571 2.281070 AGCTCAAGTGTGTGCCGG 60.281 61.111 0.00 0.00 43.77 6.13
3325 4572 1.439353 AACAGCTCAAGTGTGTGCCG 61.439 55.000 0.00 0.00 43.77 5.69
3326 4573 0.740737 AAACAGCTCAAGTGTGTGCC 59.259 50.000 0.00 0.00 43.77 5.01
3327 4574 1.672881 AGAAACAGCTCAAGTGTGTGC 59.327 47.619 0.00 0.00 43.19 4.57
3328 4575 2.033407 CGAGAAACAGCTCAAGTGTGTG 60.033 50.000 0.00 0.00 34.56 3.82
3329 4576 2.205074 CGAGAAACAGCTCAAGTGTGT 58.795 47.619 0.00 0.00 34.56 3.72
3330 4577 2.205074 ACGAGAAACAGCTCAAGTGTG 58.795 47.619 0.00 0.00 34.56 3.82
3331 4578 2.604046 ACGAGAAACAGCTCAAGTGT 57.396 45.000 0.00 0.00 34.56 3.55
3332 4579 3.643763 AGTACGAGAAACAGCTCAAGTG 58.356 45.455 0.00 0.00 34.56 3.16
3333 4580 4.323553 AAGTACGAGAAACAGCTCAAGT 57.676 40.909 0.00 0.00 34.56 3.16
3334 4581 5.435557 CAAAAGTACGAGAAACAGCTCAAG 58.564 41.667 0.00 0.00 34.56 3.02
3335 4582 4.260620 GCAAAAGTACGAGAAACAGCTCAA 60.261 41.667 0.00 0.00 34.56 3.02
3336 4583 3.247648 GCAAAAGTACGAGAAACAGCTCA 59.752 43.478 0.00 0.00 34.56 4.26
3337 4584 3.661936 CGCAAAAGTACGAGAAACAGCTC 60.662 47.826 0.00 0.00 0.00 4.09
3338 4585 2.221055 CGCAAAAGTACGAGAAACAGCT 59.779 45.455 0.00 0.00 0.00 4.24
3339 4586 2.033151 ACGCAAAAGTACGAGAAACAGC 60.033 45.455 0.00 0.00 0.00 4.40
3340 4587 3.854286 ACGCAAAAGTACGAGAAACAG 57.146 42.857 0.00 0.00 0.00 3.16
3341 4588 4.362279 ACTACGCAAAAGTACGAGAAACA 58.638 39.130 0.00 0.00 0.00 2.83
3342 4589 4.143452 GGACTACGCAAAAGTACGAGAAAC 60.143 45.833 0.00 0.00 0.00 2.78
3343 4590 3.983344 GGACTACGCAAAAGTACGAGAAA 59.017 43.478 0.00 0.00 0.00 2.52
3344 4591 3.004629 TGGACTACGCAAAAGTACGAGAA 59.995 43.478 0.00 0.00 29.68 2.87
3345 4592 2.553602 TGGACTACGCAAAAGTACGAGA 59.446 45.455 0.00 0.00 29.68 4.04
3346 4593 2.937591 TGGACTACGCAAAAGTACGAG 58.062 47.619 0.00 0.00 29.68 4.18
3347 4594 3.247442 CATGGACTACGCAAAAGTACGA 58.753 45.455 0.00 0.00 29.68 3.43
3348 4595 2.991190 ACATGGACTACGCAAAAGTACG 59.009 45.455 0.00 0.00 29.68 3.67
3349 4596 4.328169 GGTACATGGACTACGCAAAAGTAC 59.672 45.833 8.27 0.00 0.00 2.73
3350 4597 4.497300 GGTACATGGACTACGCAAAAGTA 58.503 43.478 8.27 0.00 0.00 2.24
3351 4598 3.332034 GGTACATGGACTACGCAAAAGT 58.668 45.455 8.27 0.00 0.00 2.66
3352 4599 2.676342 GGGTACATGGACTACGCAAAAG 59.324 50.000 8.27 0.00 0.00 2.27
3353 4600 2.616001 GGGGTACATGGACTACGCAAAA 60.616 50.000 8.27 0.00 0.00 2.44
3354 4601 1.065998 GGGGTACATGGACTACGCAAA 60.066 52.381 8.27 0.00 0.00 3.68
3355 4602 0.538118 GGGGTACATGGACTACGCAA 59.462 55.000 8.27 0.00 0.00 4.85
3356 4603 1.332144 GGGGGTACATGGACTACGCA 61.332 60.000 8.27 0.00 0.00 5.24
3357 4604 1.047034 AGGGGGTACATGGACTACGC 61.047 60.000 8.27 9.83 0.00 4.42
3358 4605 1.038280 GAGGGGGTACATGGACTACG 58.962 60.000 8.27 0.00 0.00 3.51
3359 4606 1.343681 TGGAGGGGGTACATGGACTAC 60.344 57.143 8.27 1.21 0.00 2.73
3360 4607 1.020462 TGGAGGGGGTACATGGACTA 58.980 55.000 8.27 0.00 0.00 2.59
3361 4608 0.326618 CTGGAGGGGGTACATGGACT 60.327 60.000 8.27 0.00 0.00 3.85
3362 4609 1.984288 GCTGGAGGGGGTACATGGAC 61.984 65.000 0.00 0.00 0.00 4.02
3363 4610 1.692749 GCTGGAGGGGGTACATGGA 60.693 63.158 0.00 0.00 0.00 3.41
3364 4611 1.987807 CTGCTGGAGGGGGTACATGG 61.988 65.000 0.00 0.00 0.00 3.66
3365 4612 0.982852 TCTGCTGGAGGGGGTACATG 60.983 60.000 0.00 0.00 0.00 3.21
3366 4613 0.983378 GTCTGCTGGAGGGGGTACAT 60.983 60.000 0.00 0.00 0.00 2.29
3367 4614 1.612442 GTCTGCTGGAGGGGGTACA 60.612 63.158 0.00 0.00 0.00 2.90
3368 4615 1.612442 TGTCTGCTGGAGGGGGTAC 60.612 63.158 0.00 0.00 0.00 3.34
3369 4616 1.306141 CTGTCTGCTGGAGGGGGTA 60.306 63.158 0.00 0.00 0.00 3.69
3370 4617 2.608988 CTGTCTGCTGGAGGGGGT 60.609 66.667 0.00 0.00 0.00 4.95
3371 4618 4.106925 GCTGTCTGCTGGAGGGGG 62.107 72.222 0.00 0.00 38.95 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.