Multiple sequence alignment - TraesCS5A01G383800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G383800 chr5A 100.000 3291 0 0 1 3291 581489298 581486008 0.000000e+00 6078
1 TraesCS5A01G383800 chr5A 96.471 85 1 1 3207 3291 108590808 108590890 4.430000e-29 139
2 TraesCS5A01G383800 chr5A 98.701 77 1 0 3215 3291 705928554 705928478 1.590000e-28 137
3 TraesCS5A01G383800 chr5D 93.260 2730 112 34 21 2704 461441974 461439271 0.000000e+00 3956
4 TraesCS5A01G383800 chr5D 84.043 470 44 18 2738 3197 461439111 461438663 1.090000e-114 424
5 TraesCS5A01G383800 chr5D 80.088 226 45 0 1153 1378 495626199 495626424 5.650000e-38 169
6 TraesCS5A01G383800 chr1B 81.739 230 40 2 1150 1378 627929091 627928863 1.210000e-44 191
7 TraesCS5A01G383800 chr1A 81.304 230 41 2 1150 1378 550314240 550314012 5.610000e-43 185
8 TraesCS5A01G383800 chr1A 98.701 77 1 0 3215 3291 145899359 145899283 1.590000e-28 137
9 TraesCS5A01G383800 chr4A 80.870 230 42 2 1153 1381 19622533 19622305 2.610000e-41 180
10 TraesCS5A01G383800 chr2A 80.426 235 43 3 1158 1389 42471033 42471267 3.380000e-40 176
11 TraesCS5A01G383800 chr1D 80.435 230 43 2 1150 1378 457852091 457851863 1.210000e-39 174
12 TraesCS5A01G383800 chr5B 79.399 233 47 1 1153 1385 612679826 612680057 2.630000e-36 163
13 TraesCS5A01G383800 chr2D 80.000 220 44 0 1158 1377 37609046 37609265 2.630000e-36 163
14 TraesCS5A01G383800 chr3A 94.382 89 5 0 3203 3291 113394194 113394282 1.590000e-28 137
15 TraesCS5A01G383800 chr3A 98.701 77 1 0 3215 3291 510179349 510179273 1.590000e-28 137
16 TraesCS5A01G383800 chr3A 97.468 79 2 0 3213 3291 572590630 572590708 5.730000e-28 135
17 TraesCS5A01G383800 chr3A 97.468 79 2 0 3213 3291 725458793 725458871 5.730000e-28 135
18 TraesCS5A01G383800 chr7A 98.684 76 1 0 3216 3291 456252186 456252111 5.730000e-28 135
19 TraesCS5A01G383800 chr7A 94.186 86 2 3 3206 3291 154372786 154372868 9.590000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G383800 chr5A 581486008 581489298 3290 True 6078 6078 100.0000 1 3291 1 chr5A.!!$R1 3290
1 TraesCS5A01G383800 chr5D 461438663 461441974 3311 True 2190 3956 88.6515 21 3197 2 chr5D.!!$R1 3176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 866 0.035439 TGGAGGAGGGCGACATTTTC 60.035 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2829 2999 0.323816 TCCACTGAGGATGACGAGCT 60.324 55.0 0.0 0.0 43.07 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 2.264794 GACCACGGCCACTGTAGG 59.735 66.667 2.24 0.10 0.00 3.18
240 241 2.273370 TAAGCGGCTACTTGTTCGAG 57.727 50.000 1.35 0.00 0.00 4.04
261 262 3.323758 TTCCAGAACCATCGCCCCG 62.324 63.158 0.00 0.00 0.00 5.73
280 281 2.203938 TCCGGGCCTTCCAGAACT 60.204 61.111 0.84 0.00 34.36 3.01
287 288 1.901085 CCTTCCAGAACTCTCCCCG 59.099 63.158 0.00 0.00 0.00 5.73
304 305 2.347490 GGCCACGTCACACAGGAT 59.653 61.111 0.00 0.00 0.00 3.24
305 306 1.594833 GGCCACGTCACACAGGATA 59.405 57.895 0.00 0.00 0.00 2.59
306 307 0.036765 GGCCACGTCACACAGGATAA 60.037 55.000 0.00 0.00 0.00 1.75
307 308 1.359848 GCCACGTCACACAGGATAAG 58.640 55.000 0.00 0.00 0.00 1.73
308 309 1.359848 CCACGTCACACAGGATAAGC 58.640 55.000 0.00 0.00 0.00 3.09
309 310 1.359848 CACGTCACACAGGATAAGCC 58.640 55.000 0.00 0.00 0.00 4.35
316 317 2.111878 CAGGATAAGCCAGCCCCG 59.888 66.667 0.00 0.00 40.02 5.73
317 318 3.171388 AGGATAAGCCAGCCCCGG 61.171 66.667 0.00 0.00 40.02 5.73
370 371 0.817654 CTTTCGGAATTGGAAGCCCC 59.182 55.000 0.00 0.00 0.00 5.80
373 374 3.147595 GGAATTGGAAGCCCCGGC 61.148 66.667 0.00 0.00 42.33 6.13
456 457 2.789203 GCGCCTCAAGTACGAAGCG 61.789 63.158 8.78 8.78 46.20 4.68
458 459 1.674611 CGCCTCAAGTACGAAGCGTG 61.675 60.000 2.33 0.00 40.21 5.34
459 460 0.388134 GCCTCAAGTACGAAGCGTGA 60.388 55.000 2.33 0.00 41.39 4.35
499 500 1.107945 CTCTCCCTTCTTCTCCGTCC 58.892 60.000 0.00 0.00 0.00 4.79
500 501 0.324460 TCTCCCTTCTTCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
513 519 3.391382 GTCCCCGGTCTGGTCTGG 61.391 72.222 0.00 0.00 35.15 3.86
541 547 2.820787 TCTTCTCTCTCCGTCCTTGTTC 59.179 50.000 0.00 0.00 0.00 3.18
577 583 6.417191 TGTACTCTCCGATTTTACATTTGC 57.583 37.500 0.00 0.00 0.00 3.68
586 592 2.122783 TTTACATTTGCCCTCCTCCG 57.877 50.000 0.00 0.00 0.00 4.63
609 615 1.002868 TCCTCTTGCAGCTGCTTCC 60.003 57.895 36.61 11.19 42.66 3.46
643 649 2.570135 GAGCTCTGCCATTTTAGGAGG 58.430 52.381 6.43 0.00 0.00 4.30
669 675 3.282885 GAGATCCCCTGAATTGGTCAAC 58.717 50.000 0.00 0.00 35.22 3.18
670 676 2.024941 AGATCCCCTGAATTGGTCAACC 60.025 50.000 0.00 0.00 35.22 3.77
671 677 1.153539 TCCCCTGAATTGGTCAACCA 58.846 50.000 0.00 0.00 45.94 3.67
687 693 3.249799 TCAACCACAGCATTGTTAGTTCG 59.750 43.478 0.00 0.00 34.62 3.95
713 719 5.050091 ACGATTGCTCAAACTTTGACTACTG 60.050 40.000 0.00 0.00 35.46 2.74
731 737 3.425659 ACTGCAGATTCTTTTCCCCTTC 58.574 45.455 23.35 0.00 0.00 3.46
742 748 3.483808 TTTCCCCTTCATTTTGCAACC 57.516 42.857 0.00 0.00 0.00 3.77
748 754 3.392882 CCTTCATTTTGCAACCACCTTC 58.607 45.455 0.00 0.00 0.00 3.46
772 778 3.435026 GGTAGCCCCTGATTGATTGCTAA 60.435 47.826 0.00 0.00 33.55 3.09
778 784 4.261909 CCCCTGATTGATTGCTAATCTTGC 60.262 45.833 9.34 0.00 38.72 4.01
804 810 8.608317 CGGTTCTGAATTTTGTTTTTGGTATTT 58.392 29.630 0.00 0.00 0.00 1.40
828 834 4.037446 TGATTCAGAAACTTTCGGGTTTGG 59.963 41.667 6.76 1.41 39.20 3.28
844 850 3.551846 GTTTGGTTCTTTGGAGTCTGGA 58.448 45.455 0.00 0.00 0.00 3.86
847 853 1.978580 GGTTCTTTGGAGTCTGGAGGA 59.021 52.381 0.00 0.00 0.00 3.71
848 854 2.027653 GGTTCTTTGGAGTCTGGAGGAG 60.028 54.545 0.00 0.00 0.00 3.69
850 856 0.908198 CTTTGGAGTCTGGAGGAGGG 59.092 60.000 0.00 0.00 0.00 4.30
852 858 3.151022 GGAGTCTGGAGGAGGGCG 61.151 72.222 0.00 0.00 0.00 6.13
853 859 2.043852 GAGTCTGGAGGAGGGCGA 60.044 66.667 0.00 0.00 0.00 5.54
854 860 2.363147 AGTCTGGAGGAGGGCGAC 60.363 66.667 0.00 0.00 0.00 5.19
855 861 2.680352 GTCTGGAGGAGGGCGACA 60.680 66.667 0.00 0.00 0.00 4.35
860 866 0.035439 TGGAGGAGGGCGACATTTTC 60.035 55.000 0.00 0.00 0.00 2.29
867 873 0.931005 GGGCGACATTTTCTCTAGCG 59.069 55.000 0.00 0.00 0.00 4.26
938 945 2.596904 TTTCCTTGGTCCGATCGATC 57.403 50.000 18.66 15.68 0.00 3.69
1005 1012 3.252215 TGTTTGGTCGTTTGATCATGGAC 59.748 43.478 0.00 4.55 34.53 4.02
1038 1045 4.221482 GGCATTGTGAAAGAGGAGGAATTT 59.779 41.667 0.00 0.00 0.00 1.82
1065 1072 2.993008 GGAGGTGCTGCTGATGGA 59.007 61.111 0.00 0.00 0.00 3.41
1080 1087 0.311165 ATGGATACTCGCCGTCTTCG 59.689 55.000 0.00 0.00 37.61 3.79
1122 1129 4.865865 GGCTCTTCCCCATCTTCG 57.134 61.111 0.00 0.00 0.00 3.79
1333 1340 1.003839 CCCCGCTACTTCAAGCACA 60.004 57.895 0.00 0.00 42.91 4.57
1388 1395 4.876107 CACCTATGTAAGTTTCTGCCGATT 59.124 41.667 0.00 0.00 0.00 3.34
1389 1396 4.876107 ACCTATGTAAGTTTCTGCCGATTG 59.124 41.667 0.00 0.00 0.00 2.67
1393 1400 1.981256 AAGTTTCTGCCGATTGGTGT 58.019 45.000 0.00 0.00 37.67 4.16
1409 1416 1.535462 GGTGTACGCATTGTTCTTGCT 59.465 47.619 8.97 0.00 37.96 3.91
1418 1425 3.751175 GCATTGTTCTTGCTGTACCAGTA 59.249 43.478 0.00 0.00 37.14 2.74
1448 1455 1.741706 CCATCTATCCATGGCGATTGC 59.258 52.381 6.96 0.00 37.12 3.56
1472 1479 4.891260 TGGCAAAATGTGATGCAATGTAA 58.109 34.783 0.00 0.00 44.32 2.41
1473 1480 5.489249 TGGCAAAATGTGATGCAATGTAAT 58.511 33.333 0.00 0.00 44.32 1.89
1480 1487 4.980590 TGTGATGCAATGTAATTCGAACC 58.019 39.130 0.00 0.00 31.22 3.62
1633 1640 1.880340 GCTGAAGACGATCAGGCGG 60.880 63.158 15.61 0.00 45.60 6.13
1696 1709 4.290622 CAGGGGCAACAGCAGGGT 62.291 66.667 0.00 0.00 39.74 4.34
2167 2192 3.157252 GAGAGGCATCGGGAGGCA 61.157 66.667 7.66 0.00 40.32 4.75
2266 2291 2.066999 CCTCTACCACCTCAGCCCC 61.067 68.421 0.00 0.00 0.00 5.80
2296 2321 1.443802 GCAGCTACCAGTGAAGGAAC 58.556 55.000 0.00 0.00 0.00 3.62
2300 2325 1.798813 GCTACCAGTGAAGGAACAACG 59.201 52.381 0.00 0.00 0.00 4.10
2335 2367 1.797635 GAGAAATATCTGCTGCCGCTC 59.202 52.381 0.70 0.00 35.54 5.03
2347 2379 3.479269 CCGCTCGGAGAACAACGC 61.479 66.667 9.69 0.00 37.50 4.84
2348 2380 3.827784 CGCTCGGAGAACAACGCG 61.828 66.667 9.69 3.53 34.09 6.01
2467 2504 1.358046 CCGTAGGCGTAGTGGTAGC 59.642 63.158 0.00 0.00 46.14 3.58
2471 2508 0.180171 TAGGCGTAGTGGTAGCGGTA 59.820 55.000 0.00 0.00 0.00 4.02
2473 2510 1.298938 GCGTAGTGGTAGCGGTAGC 60.299 63.158 16.50 16.50 45.58 3.58
2526 2570 2.574018 GGGGGTTGGTCTGCTTTGC 61.574 63.158 0.00 0.00 0.00 3.68
2546 2590 7.008992 GCTTTGCTCATTTTCTATTGCTAGTTG 59.991 37.037 0.00 0.00 0.00 3.16
2547 2591 7.452880 TTGCTCATTTTCTATTGCTAGTTGT 57.547 32.000 0.00 0.00 0.00 3.32
2548 2592 8.560355 TTGCTCATTTTCTATTGCTAGTTGTA 57.440 30.769 0.00 0.00 0.00 2.41
2638 2682 4.362476 CCTTTTGGCCTGGCGTGC 62.362 66.667 13.40 0.00 0.00 5.34
2661 2705 2.291741 GGAATAATGCTCCGAGGCTTTG 59.708 50.000 0.00 0.00 32.97 2.77
2694 2738 2.496470 ACTCCAAGTTGGACGTAGATCC 59.504 50.000 21.05 0.00 42.67 3.36
2704 2748 1.001597 GACGTAGATCCATCGACCCAC 60.002 57.143 8.39 0.00 0.00 4.61
2705 2749 0.040336 CGTAGATCCATCGACCCACG 60.040 60.000 0.00 0.00 44.09 4.94
2720 2791 1.372128 CACGAGGCAAAGGCAAAGC 60.372 57.895 0.00 0.00 43.71 3.51
2795 2965 1.154488 CGGCGTTTTCATGGTCGTG 60.154 57.895 0.00 0.00 0.00 4.35
2829 2999 5.010282 GTCTGGAATGAAAAGGAAAGGCTA 58.990 41.667 0.00 0.00 0.00 3.93
2833 3003 4.097135 GGAATGAAAAGGAAAGGCTAGCTC 59.903 45.833 15.72 4.13 0.00 4.09
2840 3010 1.539280 GGAAAGGCTAGCTCGTCATCC 60.539 57.143 15.72 10.17 0.00 3.51
2845 3015 1.028905 GCTAGCTCGTCATCCTCAGT 58.971 55.000 7.70 0.00 0.00 3.41
2863 3033 8.511604 TCCTCAGTGGATTTGATATTCTTTTC 57.488 34.615 0.00 0.00 40.56 2.29
2864 3034 7.557719 TCCTCAGTGGATTTGATATTCTTTTCC 59.442 37.037 0.00 0.00 40.56 3.13
2865 3035 7.320443 TCAGTGGATTTGATATTCTTTTCCG 57.680 36.000 0.00 0.00 0.00 4.30
2866 3036 7.109501 TCAGTGGATTTGATATTCTTTTCCGA 58.890 34.615 0.00 0.00 0.00 4.55
2867 3037 7.609918 TCAGTGGATTTGATATTCTTTTCCGAA 59.390 33.333 0.00 0.00 0.00 4.30
2897 3067 0.739813 CACCGGGGATTCTCGTTCAC 60.740 60.000 6.32 0.00 0.00 3.18
2909 3079 2.736995 GTTCACACTGCGCCGCTA 60.737 61.111 11.67 0.00 0.00 4.26
2933 3103 1.999346 CCCCGTTCCTCCCTTTCAT 59.001 57.895 0.00 0.00 0.00 2.57
2935 3105 0.912486 CCCGTTCCTCCCTTTCATCT 59.088 55.000 0.00 0.00 0.00 2.90
2936 3106 2.116238 CCCGTTCCTCCCTTTCATCTA 58.884 52.381 0.00 0.00 0.00 1.98
2937 3107 2.103263 CCCGTTCCTCCCTTTCATCTAG 59.897 54.545 0.00 0.00 0.00 2.43
2938 3108 2.766828 CCGTTCCTCCCTTTCATCTAGT 59.233 50.000 0.00 0.00 0.00 2.57
2939 3109 3.958798 CCGTTCCTCCCTTTCATCTAGTA 59.041 47.826 0.00 0.00 0.00 1.82
2940 3110 4.202131 CCGTTCCTCCCTTTCATCTAGTAC 60.202 50.000 0.00 0.00 0.00 2.73
2941 3111 4.497674 CGTTCCTCCCTTTCATCTAGTACG 60.498 50.000 0.00 0.00 0.00 3.67
2942 3112 4.246712 TCCTCCCTTTCATCTAGTACGT 57.753 45.455 0.00 0.00 0.00 3.57
2946 3116 5.121380 TCCCTTTCATCTAGTACGTACCT 57.879 43.478 21.80 11.74 0.00 3.08
2959 3129 2.188161 GTACCTCTCTCCCGCTCGG 61.188 68.421 0.48 0.48 0.00 4.63
3017 3192 0.599204 CCACGGTGCGTCTACTTTGT 60.599 55.000 1.68 0.00 38.32 2.83
3018 3193 1.214367 CACGGTGCGTCTACTTTGTT 58.786 50.000 0.00 0.00 38.32 2.83
3019 3194 1.191647 CACGGTGCGTCTACTTTGTTC 59.808 52.381 0.00 0.00 38.32 3.18
3031 3206 1.238439 CTTTGTTCGGATGCAGTGGT 58.762 50.000 0.00 0.00 0.00 4.16
3036 3211 2.746412 TTCGGATGCAGTGGTGGGTG 62.746 60.000 0.00 0.00 0.00 4.61
3039 3214 3.185203 ATGCAGTGGTGGGTGGGT 61.185 61.111 0.00 0.00 0.00 4.51
3040 3215 1.847798 GATGCAGTGGTGGGTGGGTA 61.848 60.000 0.00 0.00 0.00 3.69
3041 3216 1.852157 ATGCAGTGGTGGGTGGGTAG 61.852 60.000 0.00 0.00 0.00 3.18
3042 3217 3.077907 CAGTGGTGGGTGGGTAGG 58.922 66.667 0.00 0.00 0.00 3.18
3043 3218 1.846124 CAGTGGTGGGTGGGTAGGT 60.846 63.158 0.00 0.00 0.00 3.08
3055 3230 1.191535 GGGTAGGTTTGGATTTGGCC 58.808 55.000 0.00 0.00 0.00 5.36
3061 3236 1.338105 GGTTTGGATTTGGCCAGCTTC 60.338 52.381 5.11 4.21 39.52 3.86
3062 3237 1.344114 GTTTGGATTTGGCCAGCTTCA 59.656 47.619 5.11 0.00 39.52 3.02
3063 3238 1.941377 TTGGATTTGGCCAGCTTCAT 58.059 45.000 5.11 0.00 39.52 2.57
3064 3239 1.941377 TGGATTTGGCCAGCTTCATT 58.059 45.000 5.11 0.00 33.10 2.57
3066 3241 1.202336 GGATTTGGCCAGCTTCATTCG 60.202 52.381 5.11 0.00 0.00 3.34
3067 3242 1.474077 GATTTGGCCAGCTTCATTCGT 59.526 47.619 5.11 0.00 0.00 3.85
3070 3245 2.464459 GGCCAGCTTCATTCGTCCG 61.464 63.158 0.00 0.00 0.00 4.79
3071 3246 1.741770 GCCAGCTTCATTCGTCCGT 60.742 57.895 0.00 0.00 0.00 4.69
3072 3247 1.970917 GCCAGCTTCATTCGTCCGTG 61.971 60.000 0.00 0.00 0.00 4.94
3073 3248 0.670546 CCAGCTTCATTCGTCCGTGT 60.671 55.000 0.00 0.00 0.00 4.49
3074 3249 0.439985 CAGCTTCATTCGTCCGTGTG 59.560 55.000 0.00 0.00 0.00 3.82
3077 3252 1.148310 CTTCATTCGTCCGTGTGCTT 58.852 50.000 0.00 0.00 0.00 3.91
3080 3255 0.179250 CATTCGTCCGTGTGCTTTCG 60.179 55.000 0.00 0.00 0.00 3.46
3081 3256 0.599204 ATTCGTCCGTGTGCTTTCGT 60.599 50.000 0.00 0.00 0.00 3.85
3082 3257 0.806884 TTCGTCCGTGTGCTTTCGTT 60.807 50.000 0.00 0.00 0.00 3.85
3083 3258 0.806884 TCGTCCGTGTGCTTTCGTTT 60.807 50.000 0.00 0.00 0.00 3.60
3084 3259 0.382636 CGTCCGTGTGCTTTCGTTTC 60.383 55.000 0.00 0.00 0.00 2.78
3089 3264 1.153127 TGTGCTTTCGTTTCGGGGT 60.153 52.632 0.00 0.00 0.00 4.95
3090 3265 0.748729 TGTGCTTTCGTTTCGGGGTT 60.749 50.000 0.00 0.00 0.00 4.11
3115 3290 1.878953 AACGTCTAGGCCACTGTTTG 58.121 50.000 5.01 0.00 0.00 2.93
3116 3291 0.602905 ACGTCTAGGCCACTGTTTGC 60.603 55.000 5.01 0.00 0.00 3.68
3133 3308 3.853831 TTGCTTGTACCATTGCTGATG 57.146 42.857 0.00 0.00 35.42 3.07
3170 3350 0.875059 CGAAAAGACCCAAGTGCTCC 59.125 55.000 0.00 0.00 0.00 4.70
3182 3362 3.303135 TGCTCCGGAACAGCGACT 61.303 61.111 5.23 0.00 40.01 4.18
3191 3371 0.880278 GAACAGCGACTTGAGCCACA 60.880 55.000 0.00 0.00 34.64 4.17
3197 3377 1.072159 GACTTGAGCCACAGTGCCT 59.928 57.895 0.00 0.00 0.00 4.75
3198 3378 0.536006 GACTTGAGCCACAGTGCCTT 60.536 55.000 0.00 0.00 0.00 4.35
3199 3379 0.106519 ACTTGAGCCACAGTGCCTTT 60.107 50.000 0.00 0.00 0.00 3.11
3200 3380 1.035139 CTTGAGCCACAGTGCCTTTT 58.965 50.000 0.00 0.00 0.00 2.27
3201 3381 0.746063 TTGAGCCACAGTGCCTTTTG 59.254 50.000 0.00 0.00 0.00 2.44
3202 3382 1.006922 GAGCCACAGTGCCTTTTGC 60.007 57.895 0.00 0.00 41.77 3.68
3203 3383 2.355009 GCCACAGTGCCTTTTGCG 60.355 61.111 0.00 0.00 45.60 4.85
3204 3384 3.119193 CCACAGTGCCTTTTGCGT 58.881 55.556 0.00 0.00 45.60 5.24
3205 3385 1.791103 GCCACAGTGCCTTTTGCGTA 61.791 55.000 0.00 0.00 45.60 4.42
3206 3386 0.881118 CCACAGTGCCTTTTGCGTAT 59.119 50.000 0.00 0.00 45.60 3.06
3207 3387 1.401409 CCACAGTGCCTTTTGCGTATG 60.401 52.381 0.00 0.00 45.60 2.39
3208 3388 0.881118 ACAGTGCCTTTTGCGTATGG 59.119 50.000 0.00 0.00 45.60 2.74
3209 3389 0.881118 CAGTGCCTTTTGCGTATGGT 59.119 50.000 0.00 0.00 45.60 3.55
3210 3390 1.135689 CAGTGCCTTTTGCGTATGGTC 60.136 52.381 0.00 0.00 45.60 4.02
3211 3391 1.165270 GTGCCTTTTGCGTATGGTCT 58.835 50.000 0.00 0.00 45.60 3.85
3212 3392 1.539827 GTGCCTTTTGCGTATGGTCTT 59.460 47.619 0.00 0.00 45.60 3.01
3213 3393 1.810151 TGCCTTTTGCGTATGGTCTTC 59.190 47.619 0.00 0.00 45.60 2.87
3214 3394 1.132453 GCCTTTTGCGTATGGTCTTCC 59.868 52.381 0.00 0.00 0.00 3.46
3215 3395 2.711542 CCTTTTGCGTATGGTCTTCCT 58.288 47.619 0.00 0.00 34.23 3.36
3216 3396 2.420022 CCTTTTGCGTATGGTCTTCCTG 59.580 50.000 0.00 0.00 34.23 3.86
3217 3397 2.851263 TTTGCGTATGGTCTTCCTGT 57.149 45.000 0.00 0.00 34.23 4.00
3218 3398 2.851263 TTGCGTATGGTCTTCCTGTT 57.149 45.000 0.00 0.00 34.23 3.16
3219 3399 2.093306 TGCGTATGGTCTTCCTGTTG 57.907 50.000 0.00 0.00 34.23 3.33
3220 3400 1.338674 TGCGTATGGTCTTCCTGTTGG 60.339 52.381 0.00 0.00 34.23 3.77
3221 3401 1.066430 GCGTATGGTCTTCCTGTTGGA 60.066 52.381 0.00 0.00 41.36 3.53
3238 3418 8.527810 TCCTGTTGGAAATATGAACAATTTACC 58.472 33.333 0.00 0.00 39.87 2.85
3239 3419 7.487829 CCTGTTGGAAATATGAACAATTTACCG 59.512 37.037 0.00 0.00 34.57 4.02
3240 3420 8.112016 TGTTGGAAATATGAACAATTTACCGA 57.888 30.769 0.00 0.00 0.00 4.69
3241 3421 8.577296 TGTTGGAAATATGAACAATTTACCGAA 58.423 29.630 0.00 0.00 0.00 4.30
3242 3422 9.581099 GTTGGAAATATGAACAATTTACCGAAT 57.419 29.630 0.00 0.00 0.00 3.34
3243 3423 9.579768 TTGGAAATATGAACAATTTACCGAATG 57.420 29.630 0.00 0.00 0.00 2.67
3244 3424 8.961634 TGGAAATATGAACAATTTACCGAATGA 58.038 29.630 0.00 0.00 0.00 2.57
3245 3425 9.965824 GGAAATATGAACAATTTACCGAATGAT 57.034 29.630 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.305313 TACGCACGCGCTTTCTTTTT 59.695 45.000 12.02 0.00 44.19 1.94
2 3 0.383860 GTACGCACGCGCTTTCTTTT 60.384 50.000 12.02 0.00 44.19 2.27
3 4 1.203313 GTACGCACGCGCTTTCTTT 59.797 52.632 12.02 0.00 44.19 2.52
4 5 2.664436 GGTACGCACGCGCTTTCTT 61.664 57.895 12.02 0.00 44.19 2.52
5 6 3.110178 GGTACGCACGCGCTTTCT 61.110 61.111 12.02 0.00 44.19 2.52
6 7 4.143363 GGGTACGCACGCGCTTTC 62.143 66.667 12.02 0.00 44.19 2.62
208 209 1.068954 GCCGCTTATCTTATTGCAGGC 60.069 52.381 0.00 0.00 37.69 4.85
240 241 2.115291 GGCGATGGTTCTGGAAGGC 61.115 63.158 0.00 0.00 0.00 4.35
287 288 0.036765 TTATCCTGTGTGACGTGGCC 60.037 55.000 0.00 0.00 0.00 5.36
299 300 2.111878 CGGGGCTGGCTTATCCTG 59.888 66.667 0.00 0.00 36.91 3.86
300 301 3.171388 CCGGGGCTGGCTTATCCT 61.171 66.667 0.00 0.00 35.26 3.24
301 302 4.271016 CCCGGGGCTGGCTTATCC 62.271 72.222 14.71 0.00 0.00 2.59
302 303 4.271016 CCCCGGGGCTGGCTTATC 62.271 72.222 31.01 0.00 0.00 1.75
304 305 4.835456 ATCCCCGGGGCTGGCTTA 62.835 66.667 36.68 16.98 34.68 3.09
309 310 4.506255 GAACCATCCCCGGGGCTG 62.506 72.222 36.68 34.57 34.68 4.85
316 317 1.411644 GGAAGGATTGGAACCATCCCC 60.412 57.143 14.18 7.98 45.95 4.81
317 318 1.287739 TGGAAGGATTGGAACCATCCC 59.712 52.381 14.18 9.82 45.95 3.85
373 374 4.011517 AGCCCACGTACCAACCCG 62.012 66.667 0.00 0.00 0.00 5.28
377 378 3.977134 TTTATACAGCCCACGTACCAA 57.023 42.857 0.00 0.00 0.00 3.67
379 380 3.135994 CCATTTATACAGCCCACGTACC 58.864 50.000 0.00 0.00 0.00 3.34
381 382 2.485835 GCCCATTTATACAGCCCACGTA 60.486 50.000 0.00 0.00 0.00 3.57
382 383 1.749286 GCCCATTTATACAGCCCACGT 60.749 52.381 0.00 0.00 0.00 4.49
383 384 0.951558 GCCCATTTATACAGCCCACG 59.048 55.000 0.00 0.00 0.00 4.94
384 385 0.951558 CGCCCATTTATACAGCCCAC 59.048 55.000 0.00 0.00 0.00 4.61
385 386 0.179004 CCGCCCATTTATACAGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
456 457 6.380560 AGGAAAGTACAGTACTATCCCTTCAC 59.619 42.308 13.87 7.69 38.26 3.18
458 459 6.834969 AGAGGAAAGTACAGTACTATCCCTTC 59.165 42.308 20.73 16.41 38.26 3.46
459 460 6.743788 AGAGGAAAGTACAGTACTATCCCTT 58.256 40.000 20.73 10.61 38.26 3.95
499 500 2.283966 AGACCAGACCAGACCGGG 60.284 66.667 6.32 0.00 40.22 5.73
500 501 2.973899 CAGACCAGACCAGACCGG 59.026 66.667 0.00 0.00 42.50 5.28
513 519 1.816224 ACGGAGAGAGAAGAAGCAGAC 59.184 52.381 0.00 0.00 0.00 3.51
541 547 4.095782 CGGAGAGTACAAGAAGAGAGAAGG 59.904 50.000 0.00 0.00 0.00 3.46
577 583 3.742248 GAGGAGGGTCGGAGGAGGG 62.742 73.684 0.00 0.00 0.00 4.30
586 592 1.078567 CAGCTGCAAGAGGAGGGTC 60.079 63.158 0.00 0.00 34.07 4.46
669 675 2.159627 GTCCGAACTAACAATGCTGTGG 59.840 50.000 0.00 0.00 35.37 4.17
670 676 2.159841 CGTCCGAACTAACAATGCTGTG 60.160 50.000 0.00 0.00 35.37 3.66
671 677 2.066262 CGTCCGAACTAACAATGCTGT 58.934 47.619 0.00 0.00 37.39 4.40
687 693 3.251004 AGTCAAAGTTTGAGCAATCGTCC 59.749 43.478 18.56 3.99 41.01 4.79
713 719 5.411831 AAATGAAGGGGAAAAGAATCTGC 57.588 39.130 0.00 0.00 0.00 4.26
758 764 4.036027 ACCGCAAGATTAGCAATCAATCAG 59.964 41.667 10.26 2.11 40.42 2.90
760 766 4.558538 ACCGCAAGATTAGCAATCAATC 57.441 40.909 10.26 3.02 40.42 2.67
772 778 4.853924 ACAAAATTCAGAACCGCAAGAT 57.146 36.364 0.00 0.00 43.02 2.40
778 784 7.707774 ATACCAAAAACAAAATTCAGAACCG 57.292 32.000 0.00 0.00 0.00 4.44
804 810 5.451242 CCAAACCCGAAAGTTTCTGAATCAA 60.451 40.000 13.56 0.00 37.87 2.57
828 834 2.027653 CCTCCTCCAGACTCCAAAGAAC 60.028 54.545 0.00 0.00 0.00 3.01
844 850 1.280457 AGAGAAAATGTCGCCCTCCT 58.720 50.000 0.00 0.00 0.00 3.69
847 853 1.471676 CGCTAGAGAAAATGTCGCCCT 60.472 52.381 0.00 0.00 0.00 5.19
848 854 0.931005 CGCTAGAGAAAATGTCGCCC 59.069 55.000 0.00 0.00 0.00 6.13
850 856 3.179830 TCTTCGCTAGAGAAAATGTCGC 58.820 45.455 10.27 0.00 0.00 5.19
852 858 5.553692 CGATCTTCGCTAGAGAAAATGTC 57.446 43.478 10.27 5.39 36.02 3.06
880 886 3.223435 TCAAGAACCGGCCAAATTAACA 58.777 40.909 0.00 0.00 0.00 2.41
938 945 0.462047 GGGATTACTGAGCACCGGTG 60.462 60.000 30.66 30.66 35.60 4.94
1005 1012 0.893270 TCACAATGCCGTGAAAGGGG 60.893 55.000 0.00 0.00 42.82 4.79
1038 1045 4.373116 GCACCTCCGGCGAAGTCA 62.373 66.667 9.30 0.00 0.00 3.41
1052 1059 1.495878 CGAGTATCCATCAGCAGCAC 58.504 55.000 0.00 0.00 0.00 4.40
1056 1063 1.363807 CGGCGAGTATCCATCAGCA 59.636 57.895 0.00 0.00 0.00 4.41
1059 1066 1.337071 GAAGACGGCGAGTATCCATCA 59.663 52.381 16.62 0.00 0.00 3.07
1065 1072 1.432251 CCACGAAGACGGCGAGTAT 59.568 57.895 16.62 0.00 44.46 2.12
1182 1189 2.687566 AGGAACGGGGTAGGGCAG 60.688 66.667 0.00 0.00 0.00 4.85
1183 1190 3.006728 CAGGAACGGGGTAGGGCA 61.007 66.667 0.00 0.00 0.00 5.36
1188 1195 1.345415 GTCTTGTTCAGGAACGGGGTA 59.655 52.381 7.58 0.00 43.94 3.69
1191 1198 0.249741 ACGTCTTGTTCAGGAACGGG 60.250 55.000 7.58 3.44 43.94 5.28
1194 1201 2.978489 CTCGTACGTCTTGTTCAGGAAC 59.022 50.000 16.05 5.23 41.50 3.62
1271 1278 2.357034 CGTCCCACACCACGAAGG 60.357 66.667 0.00 0.00 45.67 3.46
1333 1340 0.394565 ACGAAGCTGGAGAAGTTGCT 59.605 50.000 0.00 0.00 37.37 3.91
1388 1395 1.265635 GCAAGAACAATGCGTACACCA 59.734 47.619 0.00 0.00 33.57 4.17
1389 1396 1.963747 GCAAGAACAATGCGTACACC 58.036 50.000 0.00 0.00 33.57 4.16
1409 1416 3.935172 TGGATGGATGGATACTGGTACA 58.065 45.455 0.00 0.00 37.61 2.90
1418 1425 4.415846 CCATGGATAGATGGATGGATGGAT 59.584 45.833 5.56 0.00 45.24 3.41
1448 1455 3.749088 ACATTGCATCACATTTTGCCAAG 59.251 39.130 0.00 0.00 38.08 3.61
1473 1480 1.803334 CCAATCAGGTTCGGTTCGAA 58.197 50.000 0.00 0.00 43.75 3.71
1487 1494 6.816140 TGAGTTTTTCTGGAACAAAACCAATC 59.184 34.615 4.33 0.00 41.78 2.67
1494 1501 4.381079 CGGGTTGAGTTTTTCTGGAACAAA 60.381 41.667 0.00 0.00 38.70 2.83
1525 1532 0.998226 CCTGCGATGCAACACAAACG 60.998 55.000 0.00 0.00 38.41 3.60
1813 1826 2.279985 ATCTCCTGCATCTGCGCG 60.280 61.111 0.00 0.00 45.83 6.86
1928 1941 4.828925 GCTCTGGTCCTGCCGCTC 62.829 72.222 0.00 0.00 41.21 5.03
2277 2302 1.270839 TGTTCCTTCACTGGTAGCTGC 60.271 52.381 0.00 0.00 0.00 5.25
2282 2307 2.040939 TCCGTTGTTCCTTCACTGGTA 58.959 47.619 0.00 0.00 0.00 3.25
2296 2321 1.201647 TCGCTCTAGAACCTTCCGTTG 59.798 52.381 0.00 0.00 33.74 4.10
2300 2325 3.870633 TTTCTCGCTCTAGAACCTTCC 57.129 47.619 0.00 0.00 35.25 3.46
2368 2400 3.889134 TTCGCTCACTGCTGGCTGG 62.889 63.158 4.64 0.00 40.11 4.85
2369 2401 1.909141 CTTTCGCTCACTGCTGGCTG 61.909 60.000 0.00 0.00 40.11 4.85
2370 2402 1.670406 CTTTCGCTCACTGCTGGCT 60.670 57.895 0.00 0.00 40.11 4.75
2371 2403 1.230635 TTCTTTCGCTCACTGCTGGC 61.231 55.000 0.00 0.00 40.11 4.85
2437 2474 2.123428 CCTACGGTCTACCCCACGG 61.123 68.421 0.00 0.00 0.00 4.94
2467 2504 4.814294 GGAGCACCACCGCTACCG 62.814 72.222 0.00 0.00 44.01 4.02
2502 2546 4.280019 AGACCAACCCCCAACGCC 62.280 66.667 0.00 0.00 0.00 5.68
2503 2547 2.983592 CAGACCAACCCCCAACGC 60.984 66.667 0.00 0.00 0.00 4.84
2504 2548 2.976494 AAGCAGACCAACCCCCAACG 62.976 60.000 0.00 0.00 0.00 4.10
2505 2549 0.759060 AAAGCAGACCAACCCCCAAC 60.759 55.000 0.00 0.00 0.00 3.77
2506 2550 0.758685 CAAAGCAGACCAACCCCCAA 60.759 55.000 0.00 0.00 0.00 4.12
2513 2557 3.638160 AGAAAATGAGCAAAGCAGACCAA 59.362 39.130 0.00 0.00 0.00 3.67
2628 2672 1.103398 ATTATTCCAGCACGCCAGGC 61.103 55.000 0.00 0.00 0.00 4.85
2638 2682 1.071385 AGCCTCGGAGCATTATTCCAG 59.929 52.381 0.00 0.00 34.24 3.86
2661 2705 3.538634 ACTTGGAGTACTTAATCCGGC 57.461 47.619 0.00 0.00 43.04 6.13
2698 2742 3.056328 GCCTTTGCCTCGTGGGTC 61.056 66.667 5.54 0.00 37.43 4.46
2700 2744 2.146073 CTTTGCCTTTGCCTCGTGGG 62.146 60.000 5.54 0.00 36.33 4.61
2704 2748 2.259511 GGCTTTGCCTTTGCCTCG 59.740 61.111 0.73 0.00 46.69 4.63
2736 2807 3.187227 CGTGTAACTTCTGCTGCAATCTT 59.813 43.478 3.02 0.00 31.75 2.40
2795 2965 1.740025 CATTCCAGACTTTCTTCCCGC 59.260 52.381 0.00 0.00 0.00 6.13
2829 2999 0.323816 TCCACTGAGGATGACGAGCT 60.324 55.000 0.00 0.00 43.07 4.09
2840 3010 7.280876 TCGGAAAAGAATATCAAATCCACTGAG 59.719 37.037 0.00 0.00 0.00 3.35
2845 3015 6.458206 CGCTTCGGAAAAGAATATCAAATCCA 60.458 38.462 0.00 0.00 0.00 3.41
2848 3018 5.273944 GCGCTTCGGAAAAGAATATCAAAT 58.726 37.500 0.00 0.00 0.00 2.32
2855 3025 1.134694 GCGCGCTTCGGAAAAGAAT 59.865 52.632 26.67 0.00 38.94 2.40
2859 3029 4.020378 GGTGCGCGCTTCGGAAAA 62.020 61.111 33.29 5.92 41.10 2.29
2884 3054 0.716108 CGCAGTGTGAACGAGAATCC 59.284 55.000 0.00 0.00 0.00 3.01
2886 3056 1.291877 GGCGCAGTGTGAACGAGAAT 61.292 55.000 10.83 0.00 0.00 2.40
2913 3083 3.640257 GAAAGGGAGGAACGGGGCC 62.640 68.421 0.00 0.00 0.00 5.80
2915 3085 0.107165 GATGAAAGGGAGGAACGGGG 60.107 60.000 0.00 0.00 0.00 5.73
2916 3086 0.912486 AGATGAAAGGGAGGAACGGG 59.088 55.000 0.00 0.00 0.00 5.28
2918 3088 4.497674 CGTACTAGATGAAAGGGAGGAACG 60.498 50.000 0.00 0.00 0.00 3.95
2919 3089 4.401837 ACGTACTAGATGAAAGGGAGGAAC 59.598 45.833 0.00 0.00 0.00 3.62
2920 3090 4.607239 ACGTACTAGATGAAAGGGAGGAA 58.393 43.478 0.00 0.00 0.00 3.36
2933 3103 2.363680 CGGGAGAGAGGTACGTACTAGA 59.636 54.545 24.07 0.00 0.00 2.43
2935 3105 1.202580 GCGGGAGAGAGGTACGTACTA 60.203 57.143 24.07 0.00 0.00 1.82
2936 3106 0.463474 GCGGGAGAGAGGTACGTACT 60.463 60.000 24.07 11.06 0.00 2.73
2937 3107 0.463474 AGCGGGAGAGAGGTACGTAC 60.463 60.000 17.56 17.56 0.00 3.67
2938 3108 0.179062 GAGCGGGAGAGAGGTACGTA 60.179 60.000 0.00 0.00 0.00 3.57
2939 3109 1.451747 GAGCGGGAGAGAGGTACGT 60.452 63.158 0.00 0.00 0.00 3.57
2940 3110 2.535788 CGAGCGGGAGAGAGGTACG 61.536 68.421 0.00 0.00 0.00 3.67
2941 3111 2.188161 CCGAGCGGGAGAGAGGTAC 61.188 68.421 0.00 0.00 38.47 3.34
2942 3112 2.192443 CCGAGCGGGAGAGAGGTA 59.808 66.667 0.00 0.00 38.47 3.08
2946 3116 0.747283 GTAGAACCGAGCGGGAGAGA 60.747 60.000 14.07 0.00 39.97 3.10
2959 3129 1.623973 GCAACGCGACCCAGTAGAAC 61.624 60.000 15.93 0.00 0.00 3.01
2998 3169 0.599204 ACAAAGTAGACGCACCGTGG 60.599 55.000 0.00 0.00 41.37 4.94
3003 3174 1.774639 TCCGAACAAAGTAGACGCAC 58.225 50.000 0.00 0.00 0.00 5.34
3017 3192 2.350895 CCCACCACTGCATCCGAA 59.649 61.111 0.00 0.00 0.00 4.30
3018 3193 2.927856 ACCCACCACTGCATCCGA 60.928 61.111 0.00 0.00 0.00 4.55
3019 3194 2.747460 CACCCACCACTGCATCCG 60.747 66.667 0.00 0.00 0.00 4.18
3031 3206 1.462426 AATCCAAACCTACCCACCCA 58.538 50.000 0.00 0.00 0.00 4.51
3036 3211 1.191535 GGCCAAATCCAAACCTACCC 58.808 55.000 0.00 0.00 0.00 3.69
3039 3214 1.077005 AGCTGGCCAAATCCAAACCTA 59.923 47.619 7.01 0.00 35.36 3.08
3040 3215 0.178924 AGCTGGCCAAATCCAAACCT 60.179 50.000 7.01 0.00 35.36 3.50
3041 3216 0.686789 AAGCTGGCCAAATCCAAACC 59.313 50.000 7.01 0.00 35.36 3.27
3042 3217 1.344114 TGAAGCTGGCCAAATCCAAAC 59.656 47.619 7.01 0.00 35.36 2.93
3043 3218 1.714541 TGAAGCTGGCCAAATCCAAA 58.285 45.000 7.01 0.00 35.36 3.28
3055 3230 0.439985 CACACGGACGAATGAAGCTG 59.560 55.000 0.00 0.00 0.00 4.24
3061 3236 0.179250 CGAAAGCACACGGACGAATG 60.179 55.000 0.00 0.00 0.00 2.67
3062 3237 0.599204 ACGAAAGCACACGGACGAAT 60.599 50.000 0.00 0.00 0.00 3.34
3063 3238 0.806884 AACGAAAGCACACGGACGAA 60.807 50.000 0.00 0.00 0.00 3.85
3064 3239 0.806884 AAACGAAAGCACACGGACGA 60.807 50.000 0.00 0.00 0.00 4.20
3066 3241 0.382636 CGAAACGAAAGCACACGGAC 60.383 55.000 0.00 0.00 0.00 4.79
3067 3242 1.492319 CCGAAACGAAAGCACACGGA 61.492 55.000 0.00 0.00 38.42 4.69
3070 3245 1.281656 CCCCGAAACGAAAGCACAC 59.718 57.895 0.00 0.00 0.00 3.82
3071 3246 0.748729 AACCCCGAAACGAAAGCACA 60.749 50.000 0.00 0.00 0.00 4.57
3072 3247 0.317519 CAACCCCGAAACGAAAGCAC 60.318 55.000 0.00 0.00 0.00 4.40
3073 3248 2.026522 CAACCCCGAAACGAAAGCA 58.973 52.632 0.00 0.00 0.00 3.91
3074 3249 1.371267 GCAACCCCGAAACGAAAGC 60.371 57.895 0.00 0.00 0.00 3.51
3077 3252 0.531532 TAACGCAACCCCGAAACGAA 60.532 50.000 0.00 0.00 0.00 3.85
3080 3255 0.384601 CGTTAACGCAACCCCGAAAC 60.385 55.000 16.05 0.00 33.19 2.78
3081 3256 0.813210 ACGTTAACGCAACCCCGAAA 60.813 50.000 27.07 0.00 44.43 3.46
3082 3257 1.220817 GACGTTAACGCAACCCCGAA 61.221 55.000 27.07 0.00 44.43 4.30
3083 3258 1.664333 GACGTTAACGCAACCCCGA 60.664 57.895 27.07 0.00 44.43 5.14
3084 3259 0.388391 TAGACGTTAACGCAACCCCG 60.388 55.000 27.07 1.97 44.43 5.73
3089 3264 0.317799 TGGCCTAGACGTTAACGCAA 59.682 50.000 27.07 12.03 44.43 4.85
3090 3265 0.388907 GTGGCCTAGACGTTAACGCA 60.389 55.000 27.07 12.48 44.43 5.24
3115 3290 1.202336 GGCATCAGCAATGGTACAAGC 60.202 52.381 0.00 0.00 43.47 4.01
3116 3291 2.093890 TGGCATCAGCAATGGTACAAG 58.906 47.619 0.00 0.00 43.47 3.16
3133 3308 1.421410 CGACAGTCTATTGCCGTGGC 61.421 60.000 3.30 3.30 42.35 5.01
3143 3318 3.640029 ACTTGGGTCTTTTCGACAGTCTA 59.360 43.478 0.00 0.00 44.68 2.59
3153 3333 0.537371 CCGGAGCACTTGGGTCTTTT 60.537 55.000 0.00 0.00 43.58 2.27
3170 3350 2.383527 GGCTCAAGTCGCTGTTCCG 61.384 63.158 0.00 0.00 0.00 4.30
3191 3371 1.165270 GACCATACGCAAAAGGCACT 58.835 50.000 0.00 0.00 45.17 4.40
3197 3377 3.134574 ACAGGAAGACCATACGCAAAA 57.865 42.857 0.00 0.00 38.94 2.44
3198 3378 2.811431 CAACAGGAAGACCATACGCAAA 59.189 45.455 0.00 0.00 38.94 3.68
3199 3379 2.422597 CAACAGGAAGACCATACGCAA 58.577 47.619 0.00 0.00 38.94 4.85
3200 3380 1.338674 CCAACAGGAAGACCATACGCA 60.339 52.381 0.00 0.00 38.94 5.24
3201 3381 1.066430 TCCAACAGGAAGACCATACGC 60.066 52.381 0.00 0.00 38.94 4.42
3202 3382 3.328382 TTCCAACAGGAAGACCATACG 57.672 47.619 0.00 0.00 36.52 3.06
3203 3383 7.054124 TCATATTTCCAACAGGAAGACCATAC 58.946 38.462 0.00 0.00 42.14 2.39
3204 3384 7.206789 TCATATTTCCAACAGGAAGACCATA 57.793 36.000 0.00 0.00 42.14 2.74
3205 3385 6.078456 TCATATTTCCAACAGGAAGACCAT 57.922 37.500 0.00 0.00 42.14 3.55
3206 3386 5.512942 TCATATTTCCAACAGGAAGACCA 57.487 39.130 0.00 0.00 42.14 4.02
3207 3387 5.710099 TGTTCATATTTCCAACAGGAAGACC 59.290 40.000 0.00 0.00 42.14 3.85
3208 3388 6.817765 TGTTCATATTTCCAACAGGAAGAC 57.182 37.500 0.00 0.00 42.14 3.01
3209 3389 8.421249 AATTGTTCATATTTCCAACAGGAAGA 57.579 30.769 0.00 0.00 42.14 2.87
3211 3391 9.921637 GTAAATTGTTCATATTTCCAACAGGAA 57.078 29.630 0.00 0.00 39.61 3.36
3212 3392 8.527810 GGTAAATTGTTCATATTTCCAACAGGA 58.472 33.333 0.00 0.00 31.81 3.86
3213 3393 7.487829 CGGTAAATTGTTCATATTTCCAACAGG 59.512 37.037 0.00 0.00 31.81 4.00
3214 3394 8.240682 TCGGTAAATTGTTCATATTTCCAACAG 58.759 33.333 0.00 0.00 31.81 3.16
3215 3395 8.112016 TCGGTAAATTGTTCATATTTCCAACA 57.888 30.769 0.00 0.00 0.00 3.33
3216 3396 8.973835 TTCGGTAAATTGTTCATATTTCCAAC 57.026 30.769 0.00 0.00 0.00 3.77
3217 3397 9.579768 CATTCGGTAAATTGTTCATATTTCCAA 57.420 29.630 0.00 0.00 0.00 3.53
3218 3398 8.961634 TCATTCGGTAAATTGTTCATATTTCCA 58.038 29.630 0.00 0.00 0.00 3.53
3219 3399 9.965824 ATCATTCGGTAAATTGTTCATATTTCC 57.034 29.630 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.