>input_sequence_55360
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----------------------------------------------ATGGACCCCTTTCACGGCATTGTGAAAGAGGAGG
AATTTGACTTCGCCGGAGGTGCTGCTGATGGATACTCGCCGTCTTCGTGGGGCTCATCCCCGTCTTCCTGGGGCTCTTCC
CCATCTTCGTGGGCCGGCGACGGCGCCTTGGCGGAGCTGCCGCGGCCGATGGACGGCCTCGGCGAGGCCTGCCCTACCCC
GTTCCTGAACAAGACGTACGAGGTGGTGGACGACCACAGCACGGACACCATCGTGTCATGGGGCGTCGCCGGGAACACCT
TCGTGGTGTGGGACGCCCACGCCTTCTCCATGGTGCTCCTCCCCCGCTACTTCAAGCACAGCAACTTCTCCAGCTTCGTC
CGCCAGCTCAACACCTATGTAAGTTTCTGCCGATTGGTGTACGCATTGTTCTTGCTGTACCAGTATCCATCCATCCATCT
ATCCATGGCGATTGCTTGGCAAAATGTGATGCAATGTAATTCGAACCGAACCTGATTGGTTTTGTTCCAGAAAAACTCAA
CCCGATTGGGTCGTTTGTGTTGCATCGCAGGGGTTCAGGAAGGTTGATCCGGACAGGTGGGAGTTCGCGGCGGAGGGGTT
CCTGCGGGGGCAGAAGGAGCTGCTGAAGACGATCAGGCGGCGCCGGCCTCAGTCGTCGCCGGCGGGCACGCCGGCGCTGC
TGCAGCAGGGGCAA------CAGCAGGGTGCGTGCCTGGAGGTGGGGCATTTCGGGCCCGAGGGCAAGGTGCAGCGGCTG
CAGCGCGACAAGGGCACCCTGATCGCGGAGGTGGTGAAGCTGCGGCAGGAGCAGCAGGCGACGCGCGCGCAGATGCAGGA
GATGGAGGCGCGCCTGGCCGCCACGGAGCAGAAGCAGCAGCAGATGACGGTGTTCCTGGCGCGCGCCATGAAGAGCCCCA
GCTTCCTGCAGATGCTGGTGGAGCGGCAGGACCAGAGCCGGCGGAAGGAGCTCGCGGAGGCGCTCCTCTCCAAGAAGCGC
GGCCGCCCCATCGAGTACCTCCTCCCCCGCAACGGCGAGAGC------------AGCTACGGCGCCCCGGCGCGAGGCTA
CGGCCCCGGGCTCGCCGACGGCGGCGAGGGCAGGCGCGCGGACGGCGAGGACACGGAGAGCTTCTGGAAGGAGCTGCTGA
GCCTGGGCCTGGAGGAGAGGCATCGGGAGGCAGGCGGGGGCGGGGGAGGGGAGGCGAGCGGCGCCGAGGTGGACGACGAC
GTGGACGATGAGGTGGACGAGCTGGTGCAGAGCCTCTACCACCTCAGCCCCAACCGGCCCCGCAGCTACCAGTGA-----
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>chr5A_1_TraesCS5A01G383800
AAAAAAGAAAGCGCGTGCGTACCCCGGGCGTCGACAGCGAGGCCGCCGACCTCCCCGGGGGGAAATATCCCGGTCGACCA
CGGCCACTGTAGGCGCATCGCGTCACGAGGGCGCGCCACGCGGCCAGCCAACTTGGCGCGCTTTCCGCGCGGAGGCGGCG
GTCAATGGCCGCCCGGTCCCGCCCGGCTGGCGCAAAGCGACGCCGGCAGCCTGCAATAAGATAAGCGGCTACTTGTTCGA
GCCTTCCAGAACCATCGCCCCGCTCCGGGCCTTCCAGAACTCTCCCCGGCCACGTCACACAGGATAAGCCAGCCCCGGGG
ATGGTTCCAATCCTTCCAGAACCGTCTCGATCTTTCGGAATTGGAAGCCCCGGCGGGTTGGTACGTGGGCTGTATAAATG
GGCGGTGACCGTGCGCCTCTTCTGACGAGCTCGCTCAAGCGCCTCAAGTACGAAGCGTGAAGGGATAGTACTGTACTTTC
CTCTCCCTTCTTCTCCGTCCCC-----GGTCTGGTCTGGTCTGCTTCTTCTCTCTCCGTCCTTGTTCCTTCTCTCTTCTT
GTACTCTCCGATTTTACATTTGCCCTCCTCCGACCCTCCTCTTGCAGCTGCTTCCGGGCGTCAATGGGGAGCTCTGCCAT
TTTAGGAGGAGCGGAGATCCCCTGAATTGGTCAACCACAGCATTGTTAGTTCGGACGATTGCTCAAACTTTGACTACTGC
AGATTCTTTTCCCCTTCATTTTGCAACCACCTTCGGGTAGCCCCTGATTGATTGCTAATCTTGCGGTTCTGAATTTTGTT
TTTGGTATTTTGATTCAGAAACTTTCGGGTTTGGTTCTTTGGAGTCTGGAGGAGGGCGACATTTTCTCTAGCGAAGATCG
CCTTCTGTTAA-TTTGGCCGGTTCTTGATTCTTTCTGGACCTCGTTTTCCTTGGTCCGATCGATCACCGGTGCTCAGTAA
TCCCCTCTGTCCAATTTTTCTCTAGAGTTTGTTTGGTCGTTTGATCATGGACCCCTTTCACGGCATTGTGAAAGAGGAGG
AATTTGACTTCGCCGGAGGTGCTGCTGATGGATACTCGCCGTCTTCGTGGGGCTCATCCCCGTCTTCCTGGGGCTCTTCC
CCATCTTCGTGGGCCGGCGACGGCGCCTTGGCGGAGCTGCCGCGGCCGATGGACGGCCTCGGCGAGGCCTGCCCTACCCC
GTTCCTGAACAAGACGTACGAGGTGGTGGACGACCACAGCACGGACACCATCGTGTCATGGGGCGTCGCCGGGAACACCT
TCGTGGTGTGGGACGCCCACGCCTTCTCCATGGTGCTCCTCCCCCGCTACTTCAAGCACAGCAACTTCTCCAGCTTCGTC
CGCCAGCTCAACACCTATGTAAGTTTCTGCCGATTGGTGTACGCATTGTTCTTGCTGTACCAGTATCCATCCATCCATCT
ATCCATGGCGATTGCTTGGCAAAATGTGATGCAATGTAATTCGAACCGAACCTGATTGGTTTTGTTCCAGAAAAACTCAA
CCCGATTGGGTCGTTTGTGTTGCATCGCAGGGGTTCAGGAAGGTTGATCCGGACAGGTGGGAGTTCGCGGCGGAGGGGTT
CCTGCGGGGGCAGAAGGAGCTGCTGAAGACGATCAGGCGGCGCCGGCCTCAGTCGTCGCCGGCGGGCACGCCGGCGCTGC
TGCAGCAGGGGCAA------CAGCAGGGTGCGTGCCTGGAGGTGGGGCATTTCGGGCCCGAGGGCAAGGTGCAGCGGCTG
CAGCGCGACAAGGGCACCCTGATCGCGGAGGTGGTGAAGCTGCGGCAGGAGCAGCAGGCGACGCGCGCGCAGATGCAGGA
GATGGAGGCGCGCCTGGCCGCCACGGAGCAGAAGCAGCAGCAGATGACGGTGTTCCTGGCGCGCGCCATGAAGAGCCCCA
GCTTCCTGCAGATGCTGGTGGAGCGGCAGGACCAGAGCCGGCGGAAGGAGCTCGCGGAGGCGCTCCTCTCCAAGAAGCGC
GGCCGCCCCATCGAGTACCTCCTCCCCCGCAACGGCGAGAGC------------AGCTACGGCGCCCCGGCGCGAGGCTA
CGGCCCCGGGCTCGCCGACGGCGGCGAGGGCAGGCGCGCGGACGGCGAGGACACGGAGAGCTTCTGGAAGGAGCTGCTGA
GCCTGGGCCTGGAGGAGAGGCATCGGGAGGCAGGCGGGGGCGGGGGAGGGGAGGCGAGCGGCGCCGAGGTGGACGACGAC
GTGGACGATGAGGTGGACGAGCTGGTGCAGAGCCTCTACCACCTCAGCCCCAACCGGCCCCGCAGCTACCAGTGAAGGAA
CAACG-------GAAGGTTCTAGAGCGAGAAATATCTGCTGCCGCTCGGAGAACAACGCGGGGCCGCAGCCTGACAGCCC
CAG---CCAGCAGTGAGCGAAAGAAGAT--GAAGGTTCTAGAACAAGAAGTTTCCGCTGGAGAACGTCGAACGCCGTGGG
GTAGACCGTAGGCGTAGTGGTAGCGGTAGCGGTGGTG-------CTCCATGCCCCCATGGGCGTGGGCGTTGGGGGTTGG
TCTGCTTTGCTCATTTTCTATTGCTAGTTGTAGTAGTACCTGACATGTTGTCGGGGCCCCGCGGCCTGCATGCGCAAGTT
GCCCGAAACAGAAAGGGGCCAGCGCCTTTTGGCCTGGCGTGCTGGAATAATGCTCCGAGGCTTTGCCGGATTAAGTACTC
CAAGTTGGACGTAGATCCATCGACCCACGAGGCAAA---------------------------GGCAAAGCCAAAGCGAG
TGCTAGAAGAT---------------------------------------------------------------------
------------------------------TGCAGCAGAAGTTACACGAAGCTAGTGGAGCTCGCTCGGCGTTTTCATGG
TCGTGCGGGAAGAAAGTCTGGAATGAAAAGGAAAGGCTAGCTCGTCATCCTCAGTGGATTTGATATTCTTTTCCGAAGCG
CGCACCACACCGGGGATTCTCGTTCACACTGCGCCGCTACCCGGCCCCGTTCCTCCCTTTCATCTAGTACGTACCTCTCT
CCCGCTCGGTTCTACTGGGTC-GCGTTGCTGTCGGGACTCCGGGGGTGCCACGGTGCGTCTAC----TTTGTTCGGATGC
AGTGGTGGGTGGGTAGGTTTGGATTTGGCCAGCTTCATTCGTCCGTGTGCTTTCGTTTCGGGGTTGCGTTAACGTCTAGG
CCACTGTTTGCTTGTACCATTGCTGATGCCACGGCAATAGACT-----GTCGAAAAGACCCAAGTGCTCCGGAACAGCGA
CTTGAGCCACAGTGCCTTTTGCGTATGGTCTTCCTGTTGGAAATATGAACAATTTACCGAATGATTTTATTAACAGAAAT
ACTAGATAAAGCATGACTAATATAGTAGAG
>chr5D_21
--------------------ACCCGGGGCGTCGACAGCGAGGCCGCCGACCTCCCCGGGGGGAAATATCCCGGTCGACCA
CGGCCACTGTAGACGCATCGCATCACGAGGGCTCGCCACGCGGCCAGCCAACTTGGCGCGCTTTCCGCGCGGAGGCGGCG
GTCAATGGCCGCCCGGTCCCGCCCGGCTGGCGCAAAGCGACGCCGGCAACCTGCAATAAGATAAGCGGCTACTTGTTCGA
CCCTTCCAGAACCATCGCCCCCCTCCGGGCCTTCCAGAACGCTCCCCCGCCACGTCACAGGATA------AGCCCCTCGG
ATGGTTCCAATCCTTCCAGAACCGTCTCGATCTTTCGGAATTGGAAGCCCGGGTGGGGTTGGTAC-GGGCTGTATAAATG
GGCGGTGACCGTGCGCCTCTTCTGACGAGCTCGCTCAAGCGCCTCAAGTACGAAGCCTAGAGGGATAGTACTGTACTTTC
CTCTCCCTTCTTCTCCGTCTGCGGTCTGGTCTGGTCTGCTCTGCTTCTTCTCTCTCCGTCCTTGTTGCTTCTCTCTTCTT
GTACTCTCCGATTTTACATTTGGCCTCCTCCAACCCTCCTCTTGCAGCTGCTTCTGGGCGTCAATGGGGAGCTCTGCCAT
TTTAGGAGAAGCGGAGATCCCCTGAATTGGTCAAT--CAGCATTGTTAGTTCAGACGATTGCTCAAACTTTGACTACTAC
AGATTCTTTTCCCCTTTATTTTGCAACGACCTTTGGGTAGCCCGTAATTGATTGCTAGTCTTGTGGTTCTGAATTTTGTT
TTTGGTATTCTGATTCAGAAACTTTCGGGTTTGCTTCTTTGGAGTCTGGGGGGCGACATT-TTTTTTCTAGCAAAGATCG
CCTTCGGTTAATTTTGGCCGGTTCTTGATTCTTTCTGGACCTCGTTTTCCTTGGTCCGATCGATTACCGGTGCTCAGTAA
TCCCCTCTGTCCAATTTTTCTCTAGAGTTTGTTTGGTCGTTTGATCATGGATCCCTTTCACGGCATTGTGAAAGAGGAGG
AATTCGACTTCGCCGGAGCTGCAGCGGATGGCTACTCGCCGTCTTCCTGGGGCTCATCCCCGTCTTCCTGGGGCTCTTCC
CAATCTTCCTGGGCCGGCGGCGGCGCCTTGGCAGAGCTGCCGCGGCCGATGGACGGCCTCGGCGAGGCGGGCCCCACGCC
CTTCCTGAACAAGACGTACGAGGTGGTGGACGACCACAGCACGGACACCATCGTGTCGTGGGGCGTCGCCGGGAACAGCT
TCGTGGTGTGGGACGCCCACGCCTTCTCCATGGTGCTCCTCCCCCGCTACTTCAAGCACTGCAACTTCTCCAGCTTCGTC
CGCCAGCTCAACACCTATGTAAGTTTCTGCCGATCAGTGCACGCATTGTTCTTGCCGTACCAGTGTCCATCCATCCATCT
ATCCATGGCGATTGATTGGCAAAATGTGATGCAATGTAGCTCGAACGGAACCTAATTGGTATTGTTCCAGAAAAACTCAA
CCCGATTGGGTTGTTTGTGTTGCATCGCAGGGGTTCAGGAAGGTTGATCCGGACAGGTGGGAGTTCGCGGCGGAGGGGTT
CCTGCGGGGCCAGAAGGAGCTGCTGAAGACGATCAGGCGCCGGCGGCCTCAGTCGTCGCCGTCTGGCACGCCGGCGCTGC
TGCAGCAGCAGCAGCAGGGCCAGCAGGGGGCGTGCCTGGAGGTGGGGCATTTCGGGCCCGAGGGCGAGGTGCAGCGGCTG
CAGCGCGACAAGGGCACCCTGATCGCGGAGGTGGTGAAGCTGCGGCAGGAGCAGCAGGCGACGCGAGCGCAGATGCAGGA
GATGGAGGCGCGCCTCGCCGCCACGGAGCAGAAGCAGCAGCAGATGACGGTGTTCCTGGCGCGCGCCATGAAGAGCCCCA
GCTTCCTCCAGATGCTGGTGCAGCGGCAGGACCAGAGCCGGCGGAAGGAGCTCGCGGAGGCGCTCCTCTCCAAGAAGCGC
GGCCGCCCCATCGAGTACCTCCTCCCCCGCAACGGCGAGACCAGCAGCGCCGCAAGCTACAGCGCCGCGGCGCGAGGCTA
CGGCCCTGGTCTCGCCGACGGCAGTGACGGCAGGCGCGCGGACGGCGAGGACACGGAGAGCTTCTGGAAGGAGCTGCTGA
GCCTGGGCCTGGAGGAGAGGCATCGGGAGGCTGGCGGGGGCGGC---GGGGAGGCGAGCGGCGCCGAGGTGGACGACGAC
GTGGACGATGAGGTGGACGAGCTGGTGCAGAGCCTCTACCACCTCAGCCCGAACCGGCCCCACAGCCACCAGTGAAGGAA
GAACAGAAGACAGAAGGTTCTAGAGCGAGAAATATCTGCTGCCGCTTGGAGAACAACGTAGGGCCGCAGCCTGACAAGTG
ACAACCCCAGCAGTGAGCGAAAGAAGATAAGAAGGTTCTAGAACAAGAAGTTTCCGCTGGAGAACGTCGAACGTCGTGGG
GTAGACCGTAGGCGTAGTGGTGGTGGTGGTAGCGGTAGTGCTGCCTCCATGCCCCCATGGGCGT------TGGGGGCTGG
TCTGCTTTGTTCATTTTCTATTGCTAGTT---GTAGTACCTGACATGTTGTCGGGGCCCCGCGGCCTGCATGCGCAAGTT
GCCCGAAACAGAAAGGGGCCAGCGCCTTTTG-CCTGGCGTGGTGGAATAATGCTCCGAGGCTTTACCGGATTAAGTACTC
CAAGTTGGACGTAGATCGATCCATCCATCCTGGTTCGTTCCCGACCGACGAGGCCATGGAAGGGGCAAAGGCAAAGCGAG
TGCTAGTAGATACTCCCTCCGTTTTAAAATAGATGATTCAACTTTATACTACTAACTTTACAAAGTTAGTATAAAGTTGG
GTCATCTATTTTGGAATGGAGAGAGTAGATTGCAGCAGAAGTTACACGAAGCTAGTGGAGCTCGCTCGGCGTTTTCATGG
TCGTACGGGAAGAAAGTCTGGAATGAAAAGGAAAGGCTGGCTTGTCATCGTCAGCGGGTTTGATTTTCCCCAT----GCG
CGCACCACACCGGCGGTTCTCGTTCAGACTGCGCCGCTGCCCCGTTCA--TCCTCCCTTTCACCC-------ACCCCTCT
CCCGCTCGATTCTACTGGGTCCGCGTTGCTGTCGGGACTCCGGAGGTGTCACGCTGCGTCTACTTTGTTTGGATGGATGC
AGTGGCGGGTAGG-----TTGGATTTGGCGAGCTTTCACCCACCCCTCTCTCTCCG---GGGGCCGCGTTAACGTCTAGG
CCACTGTTTCGTTGTACCATTGCTGATACCACGGCAACAGACTAGTACGTCGGAAAGACCCAAGTGCTCTGGAACAGCGA
CATGAGCCACCGTGCC----------------------------------------------------------------
------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSS----S-------------------------------------------------------
------------S--------S----------S-----------------------------------------------
------------------------------------------------S-------------------------------
S--------------------S------------------S------S-----------SSSS-SSSSSS------SS--
--------------------------------------------------S--S---S-S-SSSSS--------------
--------------------------------------------------------S-SS--------------------
-------------------SS-----------------S---------------------------S-------------
----------------------S--------S----------------------S-------------------------
--------S-------------------------SSS---------------S-------------------------S-
----------------S----------S-----S---------S-S-----------S-----S----------------
---------S-----------------------S---------------S--SS-S-SSSS----S------S-------
-----S----------------------------------------------------------S---------------
---------------------------------------------------S----------------------------
----S-------------S---S--S-----S--------------S---------------------------------
-S------S----------S------------S-----------------------------------SS----S--S--
S--------------------------------------------------------S-------------------S--
-----------------------------------------------------------S--------------------
----------------------------------SS---S---------------S--------S---------------
--------------S-----------------------SS------S------S------S-------------------
-----------S--------------------------------------------------------------------
---------S-----------------------------S--S------------------S-S----------------
--------SS---S--------------S------------------------------------S--------------
-----------------------------------------------------------------S--------------
---------------S----------------------------------------------------------------
-------S------------S-----------------------------------------------------------
----------------------------------------S-------------------S-----S-------------
------S--S------------S-S--S----------------------------------------------------
-------------------------------S-----------SSSS---------------------------------
--------------------------------------------------S----------S----S-------------
S---S-----------------------------------------S-----------SS----------------SSSS
SSS----------------------------------------------------------------------S------
---------------------S-S---S-SS-S---S---------------------------SSSSSS------S---
---------S-------------------SSS------------------------------------------------
-------------------------------S---------S----------------------S---------------
-----------------S---S-S---SSSS-SSSS----------------------------------S---------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------S---S------S----S--S------S---SSSSSSSSS---
-------------S-S----------S-----------S---S-SS-SSS------------S-SSSSSSSS---S----
--------S----------------------------------S----S----S-----------------SSS------
-----S----S--SSSSS-----------S-----SSSS-SS--SSSSS--S--SSSSS----SS---------------
---------SS----------------S---------S--------------S----------------S----------
-S--------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_866
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----------------------------------------------TGGAGGAGGGCGACATTTTC--------------
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>reverse_2999
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--------------------------------------AGCTCGTCATCCTCAGTGGA----------------------
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