Multiple sequence alignment - TraesCS5A01G376600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G376600 chr5A 100.000 2624 0 0 1 2624 574320623 574318000 0.000000e+00 4846.0
1 TraesCS5A01G376600 chr5D 91.628 1278 91 9 598 1868 456571750 456570482 0.000000e+00 1753.0
2 TraesCS5A01G376600 chr5D 79.290 169 12 7 378 536 456573596 456573441 2.150000e-16 97.1
3 TraesCS5A01G376600 chr5B 89.722 1333 86 21 478 1771 558261996 558260676 0.000000e+00 1655.0
4 TraesCS5A01G376600 chr5B 96.262 107 4 0 2517 2623 15249531 15249637 2.680000e-40 176.0
5 TraesCS5A01G376600 chr5B 90.196 51 3 2 1820 1868 558260339 558260289 6.060000e-07 65.8
6 TraesCS5A01G376600 chr2B 91.156 735 46 8 1893 2623 678398178 678398897 0.000000e+00 979.0
7 TraesCS5A01G376600 chr3A 90.730 712 42 11 1913 2624 594978349 594979036 0.000000e+00 928.0
8 TraesCS5A01G376600 chr4A 85.084 476 63 6 2155 2623 731594192 731593718 1.830000e-131 479.0
9 TraesCS5A01G376600 chr2D 86.353 447 44 3 2178 2621 570157003 570157435 3.060000e-129 472.0
10 TraesCS5A01G376600 chr6D 89.632 299 30 1 2325 2623 417519764 417519467 1.910000e-101 379.0
11 TraesCS5A01G376600 chr6A 89.298 299 31 1 2325 2623 84033230 84033527 8.870000e-100 374.0
12 TraesCS5A01G376600 chr4B 89.298 299 31 1 2325 2623 663073325 663073028 8.870000e-100 374.0
13 TraesCS5A01G376600 chr7B 90.775 271 24 1 2353 2623 439648838 439648569 6.900000e-96 361.0
14 TraesCS5A01G376600 chr7A 79.959 484 76 12 2135 2602 668309772 668309294 1.160000e-88 337.0
15 TraesCS5A01G376600 chr6B 79.757 494 76 15 2126 2602 655893541 655893055 1.160000e-88 337.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G376600 chr5A 574318000 574320623 2623 True 4846.00 4846 100.000 1 2624 1 chr5A.!!$R1 2623
1 TraesCS5A01G376600 chr5D 456570482 456573596 3114 True 925.05 1753 85.459 378 1868 2 chr5D.!!$R1 1490
2 TraesCS5A01G376600 chr5B 558260289 558261996 1707 True 860.40 1655 89.959 478 1868 2 chr5B.!!$R1 1390
3 TraesCS5A01G376600 chr2B 678398178 678398897 719 False 979.00 979 91.156 1893 2623 1 chr2B.!!$F1 730
4 TraesCS5A01G376600 chr3A 594978349 594979036 687 False 928.00 928 90.730 1913 2624 1 chr3A.!!$F1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.025513 CTTCTTCGAGCCGCAAATCG 59.974 55.0 0.0 0.0 40.26 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 3839 0.108804 GCGCCTATTGCTCGCCTATA 60.109 55.0 0.0 0.0 42.71 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.194005 GGGCTCTAATTCCGATCAACA 57.806 47.619 0.00 0.00 0.00 3.33
21 22 3.541632 GGGCTCTAATTCCGATCAACAA 58.458 45.455 0.00 0.00 0.00 2.83
22 23 3.945285 GGGCTCTAATTCCGATCAACAAA 59.055 43.478 0.00 0.00 0.00 2.83
23 24 4.201920 GGGCTCTAATTCCGATCAACAAAC 60.202 45.833 0.00 0.00 0.00 2.93
24 25 4.494199 GGCTCTAATTCCGATCAACAAACG 60.494 45.833 0.00 0.00 0.00 3.60
25 26 4.092968 GCTCTAATTCCGATCAACAAACGT 59.907 41.667 0.00 0.00 0.00 3.99
26 27 5.390567 GCTCTAATTCCGATCAACAAACGTT 60.391 40.000 0.00 0.00 0.00 3.99
27 28 5.922546 TCTAATTCCGATCAACAAACGTTG 58.077 37.500 0.00 0.00 44.29 4.10
28 29 3.552604 ATTCCGATCAACAAACGTTGG 57.447 42.857 0.00 0.00 43.33 3.77
29 30 2.242047 TCCGATCAACAAACGTTGGA 57.758 45.000 10.33 2.39 43.33 3.53
30 31 1.868498 TCCGATCAACAAACGTTGGAC 59.132 47.619 10.33 0.00 43.33 4.02
31 32 1.600013 CCGATCAACAAACGTTGGACA 59.400 47.619 10.33 0.00 43.33 4.02
32 33 2.349438 CCGATCAACAAACGTTGGACAG 60.349 50.000 10.33 0.00 43.33 3.51
33 34 2.650608 GATCAACAAACGTTGGACAGC 58.349 47.619 10.33 0.00 43.33 4.40
34 35 0.736053 TCAACAAACGTTGGACAGCC 59.264 50.000 10.33 0.00 43.33 4.85
35 36 0.738389 CAACAAACGTTGGACAGCCT 59.262 50.000 10.33 0.00 40.13 4.58
36 37 1.134175 CAACAAACGTTGGACAGCCTT 59.866 47.619 10.33 0.00 40.13 4.35
37 38 0.738389 ACAAACGTTGGACAGCCTTG 59.262 50.000 10.33 0.00 34.31 3.61
38 39 0.030638 CAAACGTTGGACAGCCTTGG 59.969 55.000 0.00 0.00 34.31 3.61
39 40 1.734388 AAACGTTGGACAGCCTTGGC 61.734 55.000 0.00 2.97 34.31 4.52
45 46 3.673599 GACAGCCTTGGCCTTGTC 58.326 61.111 15.11 15.11 33.92 3.18
46 47 1.228245 GACAGCCTTGGCCTTGTCA 60.228 57.895 21.51 0.00 39.67 3.58
47 48 1.228367 ACAGCCTTGGCCTTGTCAG 60.228 57.895 3.32 0.00 0.00 3.51
48 49 1.975407 CAGCCTTGGCCTTGTCAGG 60.975 63.158 3.32 2.62 44.28 3.86
49 50 2.156098 AGCCTTGGCCTTGTCAGGA 61.156 57.895 3.32 0.00 44.19 3.86
50 51 1.228552 GCCTTGGCCTTGTCAGGAA 60.229 57.895 3.32 0.00 44.19 3.36
51 52 0.827507 GCCTTGGCCTTGTCAGGAAA 60.828 55.000 3.32 0.00 44.19 3.13
52 53 0.961753 CCTTGGCCTTGTCAGGAAAC 59.038 55.000 3.32 0.00 44.19 2.78
53 54 0.593128 CTTGGCCTTGTCAGGAAACG 59.407 55.000 3.32 0.00 44.19 3.60
54 55 0.106918 TTGGCCTTGTCAGGAAACGT 60.107 50.000 3.32 0.00 44.19 3.99
55 56 0.817634 TGGCCTTGTCAGGAAACGTG 60.818 55.000 3.32 0.00 44.19 4.49
56 57 0.818040 GGCCTTGTCAGGAAACGTGT 60.818 55.000 0.00 0.00 44.19 4.49
57 58 0.307760 GCCTTGTCAGGAAACGTGTG 59.692 55.000 0.00 0.00 44.19 3.82
58 59 1.948104 CCTTGTCAGGAAACGTGTGA 58.052 50.000 0.00 0.00 44.19 3.58
59 60 1.867233 CCTTGTCAGGAAACGTGTGAG 59.133 52.381 0.00 0.00 44.19 3.51
60 61 2.483013 CCTTGTCAGGAAACGTGTGAGA 60.483 50.000 0.00 0.00 44.19 3.27
61 62 3.393800 CTTGTCAGGAAACGTGTGAGAT 58.606 45.455 0.00 0.00 0.00 2.75
62 63 3.469008 TGTCAGGAAACGTGTGAGATT 57.531 42.857 0.00 0.00 0.00 2.40
63 64 3.804036 TGTCAGGAAACGTGTGAGATTT 58.196 40.909 0.00 0.00 0.00 2.17
64 65 3.559655 TGTCAGGAAACGTGTGAGATTTG 59.440 43.478 0.00 0.00 0.00 2.32
65 66 3.560068 GTCAGGAAACGTGTGAGATTTGT 59.440 43.478 0.00 0.00 0.00 2.83
66 67 3.559655 TCAGGAAACGTGTGAGATTTGTG 59.440 43.478 0.00 0.00 0.00 3.33
67 68 3.312421 CAGGAAACGTGTGAGATTTGTGT 59.688 43.478 0.00 0.00 0.00 3.72
68 69 3.945285 AGGAAACGTGTGAGATTTGTGTT 59.055 39.130 0.00 0.00 0.00 3.32
69 70 4.035208 AGGAAACGTGTGAGATTTGTGTTC 59.965 41.667 0.00 0.00 0.00 3.18
70 71 3.963383 AACGTGTGAGATTTGTGTTCC 57.037 42.857 0.00 0.00 0.00 3.62
71 72 2.218603 ACGTGTGAGATTTGTGTTCCC 58.781 47.619 0.00 0.00 0.00 3.97
72 73 2.158813 ACGTGTGAGATTTGTGTTCCCT 60.159 45.455 0.00 0.00 0.00 4.20
73 74 3.070446 ACGTGTGAGATTTGTGTTCCCTA 59.930 43.478 0.00 0.00 0.00 3.53
74 75 3.679980 CGTGTGAGATTTGTGTTCCCTAG 59.320 47.826 0.00 0.00 0.00 3.02
75 76 3.437049 GTGTGAGATTTGTGTTCCCTAGC 59.563 47.826 0.00 0.00 0.00 3.42
76 77 3.327757 TGTGAGATTTGTGTTCCCTAGCT 59.672 43.478 0.00 0.00 0.00 3.32
77 78 4.202461 TGTGAGATTTGTGTTCCCTAGCTT 60.202 41.667 0.00 0.00 0.00 3.74
78 79 4.393371 GTGAGATTTGTGTTCCCTAGCTTC 59.607 45.833 0.00 0.00 0.00 3.86
79 80 4.041567 TGAGATTTGTGTTCCCTAGCTTCA 59.958 41.667 0.00 0.00 0.00 3.02
80 81 5.184892 AGATTTGTGTTCCCTAGCTTCAT 57.815 39.130 0.00 0.00 0.00 2.57
81 82 5.574188 AGATTTGTGTTCCCTAGCTTCATT 58.426 37.500 0.00 0.00 0.00 2.57
82 83 6.012745 AGATTTGTGTTCCCTAGCTTCATTT 58.987 36.000 0.00 0.00 0.00 2.32
83 84 5.452078 TTTGTGTTCCCTAGCTTCATTTG 57.548 39.130 0.00 0.00 0.00 2.32
84 85 3.420893 TGTGTTCCCTAGCTTCATTTGG 58.579 45.455 0.00 0.00 0.00 3.28
85 86 2.164422 GTGTTCCCTAGCTTCATTTGGC 59.836 50.000 0.00 0.00 0.00 4.52
86 87 1.751351 GTTCCCTAGCTTCATTTGGCC 59.249 52.381 0.00 0.00 0.00 5.36
87 88 0.107214 TCCCTAGCTTCATTTGGCCG 60.107 55.000 0.00 0.00 0.00 6.13
88 89 1.103398 CCCTAGCTTCATTTGGCCGG 61.103 60.000 0.00 0.00 0.00 6.13
89 90 0.107214 CCTAGCTTCATTTGGCCGGA 60.107 55.000 5.05 0.00 0.00 5.14
90 91 1.017387 CTAGCTTCATTTGGCCGGAC 58.983 55.000 5.05 0.56 0.00 4.79
91 92 0.393808 TAGCTTCATTTGGCCGGACC 60.394 55.000 3.83 6.37 39.84 4.46
92 93 1.678970 GCTTCATTTGGCCGGACCT 60.679 57.895 3.83 0.00 40.22 3.85
93 94 0.393808 GCTTCATTTGGCCGGACCTA 60.394 55.000 3.83 0.00 40.22 3.08
94 95 1.668419 CTTCATTTGGCCGGACCTAG 58.332 55.000 3.83 0.00 40.22 3.02
95 96 0.254747 TTCATTTGGCCGGACCTAGG 59.745 55.000 3.83 7.41 40.22 3.02
96 97 1.152963 CATTTGGCCGGACCTAGGG 60.153 63.158 14.81 0.00 40.22 3.53
101 102 4.525949 GCCGGACCTAGGGCGTTC 62.526 72.222 14.81 0.60 39.93 3.95
102 103 2.758737 CCGGACCTAGGGCGTTCT 60.759 66.667 14.81 0.00 0.00 3.01
103 104 1.454479 CCGGACCTAGGGCGTTCTA 60.454 63.158 14.81 0.00 0.00 2.10
104 105 1.732308 CGGACCTAGGGCGTTCTAC 59.268 63.158 14.81 0.00 0.00 2.59
105 106 1.033746 CGGACCTAGGGCGTTCTACA 61.034 60.000 14.81 0.00 0.00 2.74
106 107 1.188863 GGACCTAGGGCGTTCTACAA 58.811 55.000 14.81 0.00 0.00 2.41
107 108 1.136500 GGACCTAGGGCGTTCTACAAG 59.864 57.143 14.81 0.00 0.00 3.16
108 109 0.535797 ACCTAGGGCGTTCTACAAGC 59.464 55.000 14.81 0.00 0.00 4.01
109 110 0.535335 CCTAGGGCGTTCTACAAGCA 59.465 55.000 0.00 0.00 0.00 3.91
110 111 1.641577 CTAGGGCGTTCTACAAGCAC 58.358 55.000 0.00 0.00 33.87 4.40
111 112 2.058675 AGGGCGTTCTACAAGCACT 58.941 52.632 0.00 0.00 40.21 4.40
112 113 0.037232 AGGGCGTTCTACAAGCACTC 60.037 55.000 0.00 0.00 41.31 3.51
113 114 0.037232 GGGCGTTCTACAAGCACTCT 60.037 55.000 0.00 0.00 0.00 3.24
114 115 1.351153 GGCGTTCTACAAGCACTCTC 58.649 55.000 0.00 0.00 0.00 3.20
115 116 1.067495 GGCGTTCTACAAGCACTCTCT 60.067 52.381 0.00 0.00 0.00 3.10
116 117 1.989165 GCGTTCTACAAGCACTCTCTG 59.011 52.381 0.00 0.00 0.00 3.35
117 118 2.600731 CGTTCTACAAGCACTCTCTGG 58.399 52.381 0.00 0.00 0.00 3.86
118 119 2.029828 CGTTCTACAAGCACTCTCTGGT 60.030 50.000 0.00 0.00 0.00 4.00
119 120 3.321497 GTTCTACAAGCACTCTCTGGTG 58.679 50.000 0.00 0.00 39.91 4.17
120 121 2.598565 TCTACAAGCACTCTCTGGTGT 58.401 47.619 0.00 0.00 39.21 4.16
121 122 2.965831 TCTACAAGCACTCTCTGGTGTT 59.034 45.455 0.00 0.00 39.21 3.32
122 123 2.246719 ACAAGCACTCTCTGGTGTTC 57.753 50.000 0.00 0.00 39.21 3.18
123 124 1.765314 ACAAGCACTCTCTGGTGTTCT 59.235 47.619 0.00 0.00 39.21 3.01
124 125 2.224161 ACAAGCACTCTCTGGTGTTCTC 60.224 50.000 0.00 0.00 39.21 2.87
125 126 2.008242 AGCACTCTCTGGTGTTCTCT 57.992 50.000 0.00 0.00 39.21 3.10
126 127 2.324541 AGCACTCTCTGGTGTTCTCTT 58.675 47.619 0.00 0.00 39.21 2.85
127 128 2.298729 AGCACTCTCTGGTGTTCTCTTC 59.701 50.000 0.00 0.00 39.21 2.87
128 129 2.298729 GCACTCTCTGGTGTTCTCTTCT 59.701 50.000 0.00 0.00 39.21 2.85
129 130 3.244044 GCACTCTCTGGTGTTCTCTTCTT 60.244 47.826 0.00 0.00 39.21 2.52
130 131 4.555262 CACTCTCTGGTGTTCTCTTCTTC 58.445 47.826 0.00 0.00 33.04 2.87
131 132 3.254657 ACTCTCTGGTGTTCTCTTCTTCG 59.745 47.826 0.00 0.00 0.00 3.79
132 133 3.487372 TCTCTGGTGTTCTCTTCTTCGA 58.513 45.455 0.00 0.00 0.00 3.71
133 134 3.504134 TCTCTGGTGTTCTCTTCTTCGAG 59.496 47.826 0.00 0.00 0.00 4.04
134 135 2.029828 TCTGGTGTTCTCTTCTTCGAGC 60.030 50.000 0.00 0.00 0.00 5.03
135 136 1.000955 TGGTGTTCTCTTCTTCGAGCC 59.999 52.381 0.00 0.00 0.00 4.70
136 137 1.341606 GTGTTCTCTTCTTCGAGCCG 58.658 55.000 0.00 0.00 0.00 5.52
137 138 0.388649 TGTTCTCTTCTTCGAGCCGC 60.389 55.000 0.00 0.00 0.00 6.53
138 139 0.388649 GTTCTCTTCTTCGAGCCGCA 60.389 55.000 0.00 0.00 0.00 5.69
139 140 0.317160 TTCTCTTCTTCGAGCCGCAA 59.683 50.000 0.00 0.00 0.00 4.85
140 141 0.317160 TCTCTTCTTCGAGCCGCAAA 59.683 50.000 0.00 0.00 0.00 3.68
141 142 1.066858 TCTCTTCTTCGAGCCGCAAAT 60.067 47.619 0.00 0.00 0.00 2.32
142 143 1.325943 CTCTTCTTCGAGCCGCAAATC 59.674 52.381 0.00 0.00 0.00 2.17
143 144 0.025513 CTTCTTCGAGCCGCAAATCG 59.974 55.000 0.00 0.00 40.26 3.34
144 145 1.966493 TTCTTCGAGCCGCAAATCGC 61.966 55.000 0.00 0.00 38.79 4.58
153 154 4.096558 GCAAATCGCGGTCGCCAA 62.097 61.111 6.13 0.00 37.98 4.52
154 155 2.202298 CAAATCGCGGTCGCCAAC 60.202 61.111 6.13 0.00 37.98 3.77
155 156 2.666862 AAATCGCGGTCGCCAACA 60.667 55.556 6.13 0.00 37.98 3.33
156 157 2.038269 AAATCGCGGTCGCCAACAT 61.038 52.632 6.13 0.00 37.98 2.71
157 158 1.977594 AAATCGCGGTCGCCAACATC 61.978 55.000 6.13 0.00 37.98 3.06
158 159 2.852495 AATCGCGGTCGCCAACATCT 62.852 55.000 6.13 0.00 37.98 2.90
159 160 2.852495 ATCGCGGTCGCCAACATCTT 62.852 55.000 6.13 0.00 37.98 2.40
160 161 2.785258 GCGGTCGCCAACATCTTC 59.215 61.111 3.73 0.00 34.56 2.87
161 162 1.741770 GCGGTCGCCAACATCTTCT 60.742 57.895 3.73 0.00 34.56 2.85
162 163 1.970917 GCGGTCGCCAACATCTTCTG 61.971 60.000 3.73 0.00 34.56 3.02
163 164 1.361668 CGGTCGCCAACATCTTCTGG 61.362 60.000 0.00 0.00 35.67 3.86
164 165 0.321653 GGTCGCCAACATCTTCTGGT 60.322 55.000 0.00 0.00 34.97 4.00
165 166 1.079503 GTCGCCAACATCTTCTGGTC 58.920 55.000 0.00 0.00 34.97 4.02
166 167 0.976641 TCGCCAACATCTTCTGGTCT 59.023 50.000 0.00 0.00 34.97 3.85
167 168 2.094182 GTCGCCAACATCTTCTGGTCTA 60.094 50.000 0.00 0.00 34.97 2.59
168 169 2.094182 TCGCCAACATCTTCTGGTCTAC 60.094 50.000 0.00 0.00 34.97 2.59
169 170 2.353704 CGCCAACATCTTCTGGTCTACA 60.354 50.000 0.00 0.00 34.97 2.74
170 171 3.679917 CGCCAACATCTTCTGGTCTACAT 60.680 47.826 0.00 0.00 34.97 2.29
171 172 3.873952 GCCAACATCTTCTGGTCTACATC 59.126 47.826 0.00 0.00 34.97 3.06
172 173 4.623886 GCCAACATCTTCTGGTCTACATCA 60.624 45.833 0.00 0.00 34.97 3.07
173 174 5.491070 CCAACATCTTCTGGTCTACATCAA 58.509 41.667 0.00 0.00 0.00 2.57
174 175 6.118170 CCAACATCTTCTGGTCTACATCAAT 58.882 40.000 0.00 0.00 0.00 2.57
175 176 6.037940 CCAACATCTTCTGGTCTACATCAATG 59.962 42.308 0.00 0.00 0.00 2.82
176 177 6.305272 ACATCTTCTGGTCTACATCAATGT 57.695 37.500 0.70 0.70 44.48 2.71
177 178 6.715280 ACATCTTCTGGTCTACATCAATGTT 58.285 36.000 0.20 0.00 41.97 2.71
178 179 7.170965 ACATCTTCTGGTCTACATCAATGTTT 58.829 34.615 0.20 0.00 41.97 2.83
179 180 7.667219 ACATCTTCTGGTCTACATCAATGTTTT 59.333 33.333 0.20 0.00 41.97 2.43
180 181 8.517878 CATCTTCTGGTCTACATCAATGTTTTT 58.482 33.333 0.20 0.00 41.97 1.94
205 206 9.832445 TTTTAGCCGATGTTTATAGAATCTTCT 57.168 29.630 0.00 0.00 41.24 2.85
206 207 8.818141 TTAGCCGATGTTTATAGAATCTTCTG 57.182 34.615 2.69 0.00 38.19 3.02
207 208 6.226787 AGCCGATGTTTATAGAATCTTCTGG 58.773 40.000 2.69 0.00 38.19 3.86
208 209 6.042093 AGCCGATGTTTATAGAATCTTCTGGA 59.958 38.462 2.69 0.00 38.19 3.86
209 210 6.876257 GCCGATGTTTATAGAATCTTCTGGAT 59.124 38.462 2.69 0.00 38.19 3.41
210 211 7.389053 GCCGATGTTTATAGAATCTTCTGGATT 59.611 37.037 2.69 0.00 46.24 3.01
211 212 9.277783 CCGATGTTTATAGAATCTTCTGGATTT 57.722 33.333 2.69 0.00 43.90 2.17
220 221 7.830099 AGAATCTTCTGGATTTCAACAAGTT 57.170 32.000 0.00 0.00 43.90 2.66
221 222 8.242729 AGAATCTTCTGGATTTCAACAAGTTT 57.757 30.769 0.00 0.00 43.90 2.66
222 223 8.139989 AGAATCTTCTGGATTTCAACAAGTTTG 58.860 33.333 0.00 0.00 43.90 2.93
223 224 5.591099 TCTTCTGGATTTCAACAAGTTTGC 58.409 37.500 0.00 0.00 0.00 3.68
224 225 5.360714 TCTTCTGGATTTCAACAAGTTTGCT 59.639 36.000 0.00 0.00 0.00 3.91
225 226 6.545666 TCTTCTGGATTTCAACAAGTTTGCTA 59.454 34.615 0.00 0.00 0.00 3.49
226 227 6.707440 TCTGGATTTCAACAAGTTTGCTAA 57.293 33.333 0.00 0.00 0.00 3.09
227 228 6.738114 TCTGGATTTCAACAAGTTTGCTAAG 58.262 36.000 0.00 0.00 0.00 2.18
228 229 5.288804 TGGATTTCAACAAGTTTGCTAAGC 58.711 37.500 0.00 0.00 0.00 3.09
229 230 4.686091 GGATTTCAACAAGTTTGCTAAGCC 59.314 41.667 0.00 0.00 0.00 4.35
230 231 4.727507 TTTCAACAAGTTTGCTAAGCCA 57.272 36.364 0.00 0.00 0.00 4.75
231 232 4.727507 TTCAACAAGTTTGCTAAGCCAA 57.272 36.364 0.00 0.00 0.00 4.52
232 233 4.305989 TCAACAAGTTTGCTAAGCCAAG 57.694 40.909 0.00 0.00 0.00 3.61
233 234 3.951037 TCAACAAGTTTGCTAAGCCAAGA 59.049 39.130 0.00 0.00 0.00 3.02
234 235 3.990318 ACAAGTTTGCTAAGCCAAGAC 57.010 42.857 0.00 0.00 0.00 3.01
235 236 2.290641 ACAAGTTTGCTAAGCCAAGACG 59.709 45.455 0.00 0.00 0.00 4.18
236 237 2.543777 AGTTTGCTAAGCCAAGACGA 57.456 45.000 0.00 0.00 0.00 4.20
237 238 2.846193 AGTTTGCTAAGCCAAGACGAA 58.154 42.857 0.00 0.00 0.00 3.85
238 239 2.808543 AGTTTGCTAAGCCAAGACGAAG 59.191 45.455 0.00 0.00 0.00 3.79
239 240 1.808411 TTGCTAAGCCAAGACGAAGG 58.192 50.000 0.00 0.00 0.00 3.46
244 245 2.282180 GCCAAGACGAAGGCCCAA 60.282 61.111 0.00 0.00 45.18 4.12
245 246 1.901464 GCCAAGACGAAGGCCCAAA 60.901 57.895 0.00 0.00 45.18 3.28
246 247 1.866853 GCCAAGACGAAGGCCCAAAG 61.867 60.000 0.00 0.00 45.18 2.77
247 248 0.250727 CCAAGACGAAGGCCCAAAGA 60.251 55.000 0.00 0.00 0.00 2.52
248 249 0.875059 CAAGACGAAGGCCCAAAGAC 59.125 55.000 0.00 0.00 0.00 3.01
249 250 0.602905 AAGACGAAGGCCCAAAGACG 60.603 55.000 0.00 0.00 0.00 4.18
250 251 2.032071 ACGAAGGCCCAAAGACGG 59.968 61.111 0.00 0.00 0.00 4.79
251 252 3.431725 CGAAGGCCCAAAGACGGC 61.432 66.667 0.00 0.00 46.29 5.68
256 257 3.365535 GCCCAAAGACGGCATTGT 58.634 55.556 5.38 0.00 46.27 2.71
257 258 1.080569 GCCCAAAGACGGCATTGTG 60.081 57.895 5.38 0.00 46.27 3.33
258 259 1.080569 CCCAAAGACGGCATTGTGC 60.081 57.895 5.38 0.00 44.08 4.57
259 260 1.526575 CCCAAAGACGGCATTGTGCT 61.527 55.000 5.38 0.00 44.28 4.40
260 261 0.314935 CCAAAGACGGCATTGTGCTT 59.685 50.000 5.38 0.00 44.28 3.91
261 262 1.269726 CCAAAGACGGCATTGTGCTTT 60.270 47.619 5.38 0.00 44.28 3.51
262 263 2.030363 CCAAAGACGGCATTGTGCTTTA 60.030 45.455 5.38 0.00 44.28 1.85
263 264 2.979813 CAAAGACGGCATTGTGCTTTAC 59.020 45.455 0.00 0.00 44.28 2.01
264 265 2.185004 AGACGGCATTGTGCTTTACT 57.815 45.000 0.00 0.00 44.28 2.24
265 266 2.504367 AGACGGCATTGTGCTTTACTT 58.496 42.857 0.00 0.00 44.28 2.24
266 267 3.670625 AGACGGCATTGTGCTTTACTTA 58.329 40.909 0.00 0.00 44.28 2.24
267 268 4.261801 AGACGGCATTGTGCTTTACTTAT 58.738 39.130 0.00 0.00 44.28 1.73
268 269 4.094887 AGACGGCATTGTGCTTTACTTATG 59.905 41.667 0.00 0.00 44.28 1.90
269 270 3.128589 ACGGCATTGTGCTTTACTTATGG 59.871 43.478 1.64 0.00 44.28 2.74
270 271 3.447742 GGCATTGTGCTTTACTTATGGC 58.552 45.455 1.64 0.00 44.28 4.40
271 272 3.119173 GGCATTGTGCTTTACTTATGGCA 60.119 43.478 1.64 0.00 44.28 4.92
292 293 2.503061 CATCGGTGGAGCAGGAGG 59.497 66.667 0.00 0.00 0.00 4.30
293 294 2.039624 ATCGGTGGAGCAGGAGGT 59.960 61.111 0.00 0.00 0.00 3.85
294 295 1.043116 CATCGGTGGAGCAGGAGGTA 61.043 60.000 0.00 0.00 0.00 3.08
295 296 0.757188 ATCGGTGGAGCAGGAGGTAG 60.757 60.000 0.00 0.00 0.00 3.18
296 297 1.379977 CGGTGGAGCAGGAGGTAGA 60.380 63.158 0.00 0.00 0.00 2.59
297 298 0.970937 CGGTGGAGCAGGAGGTAGAA 60.971 60.000 0.00 0.00 0.00 2.10
298 299 0.827368 GGTGGAGCAGGAGGTAGAAG 59.173 60.000 0.00 0.00 0.00 2.85
299 300 1.619977 GGTGGAGCAGGAGGTAGAAGA 60.620 57.143 0.00 0.00 0.00 2.87
300 301 1.478916 GTGGAGCAGGAGGTAGAAGAC 59.521 57.143 0.00 0.00 0.00 3.01
301 302 1.359474 TGGAGCAGGAGGTAGAAGACT 59.641 52.381 0.00 0.00 0.00 3.24
302 303 2.225394 TGGAGCAGGAGGTAGAAGACTT 60.225 50.000 0.00 0.00 0.00 3.01
303 304 2.429250 GGAGCAGGAGGTAGAAGACTTC 59.571 54.545 7.14 7.14 33.39 3.01
304 305 2.096248 AGCAGGAGGTAGAAGACTTCG 58.904 52.381 9.53 0.00 34.99 3.79
305 306 1.135333 GCAGGAGGTAGAAGACTTCGG 59.865 57.143 9.53 0.00 34.99 4.30
306 307 1.135333 CAGGAGGTAGAAGACTTCGGC 59.865 57.143 9.53 6.54 34.99 5.54
307 308 1.183549 GGAGGTAGAAGACTTCGGCA 58.816 55.000 9.53 0.00 34.99 5.69
308 309 1.757699 GGAGGTAGAAGACTTCGGCAT 59.242 52.381 9.53 4.46 34.99 4.40
309 310 2.223852 GGAGGTAGAAGACTTCGGCATC 60.224 54.545 9.53 12.31 34.99 3.91
310 311 1.757699 AGGTAGAAGACTTCGGCATCC 59.242 52.381 9.53 8.71 34.02 3.51
311 312 1.202545 GGTAGAAGACTTCGGCATCCC 60.203 57.143 9.53 1.75 34.02 3.85
348 349 9.936759 TTTTTCAATTTCTGTAAAGGTGTTTCT 57.063 25.926 0.00 0.00 0.00 2.52
349 350 8.925161 TTTCAATTTCTGTAAAGGTGTTTCTG 57.075 30.769 0.00 0.00 0.00 3.02
350 351 7.639113 TCAATTTCTGTAAAGGTGTTTCTGT 57.361 32.000 0.00 0.00 0.00 3.41
351 352 8.740123 TCAATTTCTGTAAAGGTGTTTCTGTA 57.260 30.769 0.00 0.00 0.00 2.74
352 353 9.179909 TCAATTTCTGTAAAGGTGTTTCTGTAA 57.820 29.630 0.00 0.00 0.00 2.41
353 354 9.450807 CAATTTCTGTAAAGGTGTTTCTGTAAG 57.549 33.333 0.00 0.00 0.00 2.34
354 355 8.974060 ATTTCTGTAAAGGTGTTTCTGTAAGA 57.026 30.769 0.00 0.00 44.68 2.10
429 430 3.497879 GCGGTAGGCATGGTTGAC 58.502 61.111 0.00 0.00 42.87 3.18
430 431 2.112815 GCGGTAGGCATGGTTGACC 61.113 63.158 0.00 0.00 42.87 4.02
471 472 0.681564 CGAGTGAGCCACTACTCCCT 60.682 60.000 7.69 0.00 45.44 4.20
472 473 1.107945 GAGTGAGCCACTACTCCCTC 58.892 60.000 7.69 0.00 45.44 4.30
473 474 0.409876 AGTGAGCCACTACTCCCTCA 59.590 55.000 6.10 0.00 43.46 3.86
474 475 0.820871 GTGAGCCACTACTCCCTCAG 59.179 60.000 0.00 0.00 35.23 3.35
475 476 0.972983 TGAGCCACTACTCCCTCAGC 60.973 60.000 0.00 0.00 35.72 4.26
476 477 0.686112 GAGCCACTACTCCCTCAGCT 60.686 60.000 0.00 0.00 0.00 4.24
502 513 7.653767 AGTCCGTGTTTTAGATTTGTCTTAG 57.346 36.000 0.00 0.00 0.00 2.18
566 2193 8.947055 AACTTCAAAATCCATAATGCCATAAC 57.053 30.769 0.00 0.00 0.00 1.89
567 2194 7.202526 ACTTCAAAATCCATAATGCCATAACG 58.797 34.615 0.00 0.00 0.00 3.18
691 2334 5.418310 AATATGCGGAGTAAAAATGACCG 57.582 39.130 0.00 0.00 45.26 4.79
773 2420 3.329386 CGTCATTGAATCACCTGTGACT 58.671 45.455 1.39 0.00 43.11 3.41
774 2421 3.124128 CGTCATTGAATCACCTGTGACTG 59.876 47.826 1.39 0.00 43.11 3.51
775 2422 4.318332 GTCATTGAATCACCTGTGACTGA 58.682 43.478 1.39 0.00 43.11 3.41
776 2423 4.153117 GTCATTGAATCACCTGTGACTGAC 59.847 45.833 1.39 7.36 43.11 3.51
832 2479 1.215647 CAGGTACTCCTCACACGCC 59.784 63.158 0.00 0.00 43.07 5.68
863 2510 1.280421 ACTTCTTCCATCACCTGCTCC 59.720 52.381 0.00 0.00 0.00 4.70
888 2536 3.153919 GCTAGCTAGCTCTCATGTACCT 58.846 50.000 33.71 0.00 45.62 3.08
896 2544 0.733150 TCTCATGTACCTCGCGTCTG 59.267 55.000 5.77 0.00 0.00 3.51
960 2608 2.397549 GCCACATCAGTTCAAACAAGC 58.602 47.619 0.00 0.00 0.00 4.01
1057 2713 0.967887 CAGCCTCCTCGTCTTCCTCA 60.968 60.000 0.00 0.00 0.00 3.86
1214 2870 1.189524 AAGTGGCTGCCGTACTACCA 61.190 55.000 14.98 0.00 0.00 3.25
1219 2875 0.101939 GCTGCCGTACTACCAGTACC 59.898 60.000 10.14 0.00 46.27 3.34
1633 3289 0.323302 TGGCAAGTGAAGATGGCGTA 59.677 50.000 0.00 0.00 44.38 4.42
1675 3333 4.769688 CACTGGCACAAGACTGGATTATA 58.230 43.478 0.00 0.00 38.70 0.98
1678 3336 4.769688 TGGCACAAGACTGGATTATACTG 58.230 43.478 0.00 0.00 31.92 2.74
1695 3355 1.805345 ACTGTAGTTCTCTGTCGTCGG 59.195 52.381 0.00 0.00 0.00 4.79
1705 3365 1.947456 TCTGTCGTCGGATAGATGTGG 59.053 52.381 0.00 0.00 35.74 4.17
1709 3369 0.039074 CGTCGGATAGATGTGGCTCC 60.039 60.000 0.00 0.00 0.00 4.70
1751 3411 6.546034 AGGCTTACACAACTTTGACTGTAATT 59.454 34.615 0.00 0.00 32.65 1.40
1868 3816 7.865706 AAGGTTTACAGGATAAACATGCTAG 57.134 36.000 10.73 0.00 38.71 3.42
1869 3817 6.357367 AGGTTTACAGGATAAACATGCTAGG 58.643 40.000 10.73 0.00 38.71 3.02
1870 3818 6.157994 AGGTTTACAGGATAAACATGCTAGGA 59.842 38.462 10.73 0.00 38.71 2.94
1871 3819 6.998673 GGTTTACAGGATAAACATGCTAGGAT 59.001 38.462 10.73 0.00 38.71 3.24
1872 3820 8.154856 GGTTTACAGGATAAACATGCTAGGATA 58.845 37.037 10.73 0.00 38.71 2.59
1873 3821 9.726438 GTTTACAGGATAAACATGCTAGGATAT 57.274 33.333 0.00 0.00 37.37 1.63
1875 3823 9.725019 TTACAGGATAAACATGCTAGGATATTG 57.275 33.333 0.00 0.00 33.22 1.90
1876 3824 7.170965 ACAGGATAAACATGCTAGGATATTGG 58.829 38.462 0.00 0.00 33.22 3.16
1877 3825 7.170965 CAGGATAAACATGCTAGGATATTGGT 58.829 38.462 0.00 0.00 0.00 3.67
1878 3826 7.667219 CAGGATAAACATGCTAGGATATTGGTT 59.333 37.037 0.00 0.00 0.00 3.67
1879 3827 8.227507 AGGATAAACATGCTAGGATATTGGTTT 58.772 33.333 12.76 12.76 0.00 3.27
1880 3828 8.860088 GGATAAACATGCTAGGATATTGGTTTT 58.140 33.333 13.21 0.00 0.00 2.43
1883 3831 8.823220 AAACATGCTAGGATATTGGTTTTACT 57.177 30.769 0.00 0.00 0.00 2.24
1884 3832 9.914834 AAACATGCTAGGATATTGGTTTTACTA 57.085 29.630 0.00 0.00 0.00 1.82
1933 3881 2.437716 AATTTCGGCCGGTCGCAT 60.438 55.556 26.77 15.75 40.31 4.73
1935 3883 3.673956 ATTTCGGCCGGTCGCATCA 62.674 57.895 26.77 2.62 40.31 3.07
1961 3909 6.914757 GGTACGTACGATTTGCTCTTAATAGT 59.085 38.462 24.41 0.00 0.00 2.12
1996 3944 3.765511 TCCCTTAACTGCTTCGCTAGTTA 59.234 43.478 0.00 0.00 38.11 2.24
2045 3993 1.972660 ATCCTTAGCAGCCCCGTGAC 61.973 60.000 0.00 0.00 0.00 3.67
2196 4144 2.703416 CTCCATGAAGCTTGTAGCACA 58.297 47.619 2.10 0.00 45.56 4.57
2223 4174 2.035321 TCGTTTCCAGCATGAAAAACCC 59.965 45.455 0.00 0.00 39.69 4.11
2226 4177 1.337118 TCCAGCATGAAAAACCCCAC 58.663 50.000 0.00 0.00 39.69 4.61
2238 4189 1.729267 AACCCCACCTGCAACCTCAT 61.729 55.000 0.00 0.00 0.00 2.90
2294 4245 1.568612 CCACTCGTCGTTGCTGCATT 61.569 55.000 1.84 0.00 0.00 3.56
2315 4266 0.748005 GCCCCATCGTTGCAGTACAT 60.748 55.000 0.00 0.00 0.00 2.29
2349 4300 4.963276 TGTATCAATTTGTGTAGCTGGC 57.037 40.909 0.00 0.00 0.00 4.85
2415 4366 3.517901 CCTTCCATCTTGTACCTGTACCA 59.482 47.826 5.07 0.00 35.26 3.25
2416 4367 4.164221 CCTTCCATCTTGTACCTGTACCAT 59.836 45.833 5.07 0.00 35.26 3.55
2428 4379 1.735571 CTGTACCATTGCCGGTTGTAC 59.264 52.381 1.90 8.53 40.67 2.90
2435 4386 1.982660 TTGCCGGTTGTACCATTTCA 58.017 45.000 1.90 0.00 38.47 2.69
2439 4390 2.500229 CCGGTTGTACCATTTCACACT 58.500 47.619 0.00 0.00 38.47 3.55
2515 4466 1.328374 CGATGCAGCAAATCATGACGA 59.672 47.619 1.53 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.194005 TGTTGATCGGAATTAGAGCCC 57.806 47.619 0.00 0.00 0.00 5.19
1 2 4.494199 CGTTTGTTGATCGGAATTAGAGCC 60.494 45.833 0.00 0.00 0.00 4.70
3 4 5.779806 ACGTTTGTTGATCGGAATTAGAG 57.220 39.130 0.00 0.00 0.00 2.43
17 18 1.134175 CAAGGCTGTCCAACGTTTGTT 59.866 47.619 0.00 0.00 39.43 2.83
18 19 0.738389 CAAGGCTGTCCAACGTTTGT 59.262 50.000 0.00 0.00 33.74 2.83
19 20 0.030638 CCAAGGCTGTCCAACGTTTG 59.969 55.000 0.00 0.00 33.74 2.93
20 21 1.734388 GCCAAGGCTGTCCAACGTTT 61.734 55.000 0.00 0.00 38.26 3.60
21 22 2.193536 GCCAAGGCTGTCCAACGTT 61.194 57.895 3.29 0.00 38.26 3.99
22 23 2.594592 GCCAAGGCTGTCCAACGT 60.595 61.111 3.29 0.00 38.26 3.99
23 24 3.365265 GGCCAAGGCTGTCCAACG 61.365 66.667 11.40 0.00 41.60 4.10
24 25 1.531602 AAGGCCAAGGCTGTCCAAC 60.532 57.895 5.01 0.00 38.81 3.77
25 26 1.531365 CAAGGCCAAGGCTGTCCAA 60.531 57.895 5.01 0.00 38.81 3.53
26 27 2.115910 CAAGGCCAAGGCTGTCCA 59.884 61.111 5.01 0.00 38.81 4.02
27 28 1.973812 GACAAGGCCAAGGCTGTCC 60.974 63.158 17.89 0.41 38.81 4.02
28 29 1.228245 TGACAAGGCCAAGGCTGTC 60.228 57.895 20.47 20.47 38.81 3.51
29 30 1.228367 CTGACAAGGCCAAGGCTGT 60.228 57.895 5.01 8.36 38.81 4.40
30 31 1.975407 CCTGACAAGGCCAAGGCTG 60.975 63.158 5.01 2.43 38.81 4.85
31 32 1.719063 TTCCTGACAAGGCCAAGGCT 61.719 55.000 5.01 0.00 44.11 4.58
32 33 0.827507 TTTCCTGACAAGGCCAAGGC 60.828 55.000 5.01 1.52 44.11 4.35
33 34 0.961753 GTTTCCTGACAAGGCCAAGG 59.038 55.000 5.01 3.65 44.11 3.61
34 35 0.593128 CGTTTCCTGACAAGGCCAAG 59.407 55.000 5.01 0.00 44.11 3.61
35 36 0.106918 ACGTTTCCTGACAAGGCCAA 60.107 50.000 5.01 0.00 44.11 4.52
36 37 0.817634 CACGTTTCCTGACAAGGCCA 60.818 55.000 5.01 0.00 44.11 5.36
37 38 0.818040 ACACGTTTCCTGACAAGGCC 60.818 55.000 0.00 0.00 44.11 5.19
38 39 0.307760 CACACGTTTCCTGACAAGGC 59.692 55.000 0.00 0.00 44.11 4.35
39 40 1.867233 CTCACACGTTTCCTGACAAGG 59.133 52.381 0.00 0.00 46.06 3.61
40 41 2.821546 TCTCACACGTTTCCTGACAAG 58.178 47.619 0.00 0.00 0.00 3.16
41 42 2.971660 TCTCACACGTTTCCTGACAA 57.028 45.000 0.00 0.00 0.00 3.18
42 43 3.469008 AATCTCACACGTTTCCTGACA 57.531 42.857 0.00 0.00 0.00 3.58
43 44 3.560068 ACAAATCTCACACGTTTCCTGAC 59.440 43.478 0.00 0.00 0.00 3.51
44 45 3.559655 CACAAATCTCACACGTTTCCTGA 59.440 43.478 0.00 0.00 0.00 3.86
45 46 3.312421 ACACAAATCTCACACGTTTCCTG 59.688 43.478 0.00 0.00 0.00 3.86
46 47 3.541632 ACACAAATCTCACACGTTTCCT 58.458 40.909 0.00 0.00 0.00 3.36
47 48 3.963383 ACACAAATCTCACACGTTTCC 57.037 42.857 0.00 0.00 0.00 3.13
48 49 4.279659 GGAACACAAATCTCACACGTTTC 58.720 43.478 0.00 0.00 0.00 2.78
49 50 3.066203 GGGAACACAAATCTCACACGTTT 59.934 43.478 0.00 0.00 0.00 3.60
50 51 2.616842 GGGAACACAAATCTCACACGTT 59.383 45.455 0.00 0.00 0.00 3.99
51 52 2.158813 AGGGAACACAAATCTCACACGT 60.159 45.455 0.00 0.00 0.00 4.49
52 53 2.494059 AGGGAACACAAATCTCACACG 58.506 47.619 0.00 0.00 0.00 4.49
53 54 3.437049 GCTAGGGAACACAAATCTCACAC 59.563 47.826 0.00 0.00 0.00 3.82
54 55 3.327757 AGCTAGGGAACACAAATCTCACA 59.672 43.478 0.00 0.00 0.00 3.58
55 56 3.944087 AGCTAGGGAACACAAATCTCAC 58.056 45.455 0.00 0.00 0.00 3.51
56 57 4.041567 TGAAGCTAGGGAACACAAATCTCA 59.958 41.667 0.00 0.00 0.00 3.27
57 58 4.579869 TGAAGCTAGGGAACACAAATCTC 58.420 43.478 0.00 0.00 0.00 2.75
58 59 4.640771 TGAAGCTAGGGAACACAAATCT 57.359 40.909 0.00 0.00 0.00 2.40
59 60 5.904362 AATGAAGCTAGGGAACACAAATC 57.096 39.130 0.00 0.00 0.00 2.17
60 61 5.047092 CCAAATGAAGCTAGGGAACACAAAT 60.047 40.000 0.00 0.00 0.00 2.32
61 62 4.280677 CCAAATGAAGCTAGGGAACACAAA 59.719 41.667 0.00 0.00 0.00 2.83
62 63 3.826157 CCAAATGAAGCTAGGGAACACAA 59.174 43.478 0.00 0.00 0.00 3.33
63 64 3.420893 CCAAATGAAGCTAGGGAACACA 58.579 45.455 0.00 0.00 0.00 3.72
64 65 2.164422 GCCAAATGAAGCTAGGGAACAC 59.836 50.000 0.00 0.00 0.00 3.32
65 66 2.446435 GCCAAATGAAGCTAGGGAACA 58.554 47.619 0.00 0.00 0.00 3.18
66 67 1.751351 GGCCAAATGAAGCTAGGGAAC 59.249 52.381 0.00 0.00 0.00 3.62
67 68 1.681780 CGGCCAAATGAAGCTAGGGAA 60.682 52.381 2.24 0.00 0.00 3.97
68 69 0.107214 CGGCCAAATGAAGCTAGGGA 60.107 55.000 2.24 0.00 0.00 4.20
69 70 1.103398 CCGGCCAAATGAAGCTAGGG 61.103 60.000 2.24 0.00 0.00 3.53
70 71 0.107214 TCCGGCCAAATGAAGCTAGG 60.107 55.000 2.24 0.00 0.00 3.02
71 72 1.017387 GTCCGGCCAAATGAAGCTAG 58.983 55.000 2.24 0.00 0.00 3.42
72 73 0.393808 GGTCCGGCCAAATGAAGCTA 60.394 55.000 2.24 0.00 37.17 3.32
73 74 1.678970 GGTCCGGCCAAATGAAGCT 60.679 57.895 2.24 0.00 37.17 3.74
74 75 0.393808 TAGGTCCGGCCAAATGAAGC 60.394 55.000 15.92 0.00 40.61 3.86
75 76 1.668419 CTAGGTCCGGCCAAATGAAG 58.332 55.000 15.92 0.00 40.61 3.02
76 77 0.254747 CCTAGGTCCGGCCAAATGAA 59.745 55.000 15.92 0.00 40.61 2.57
77 78 1.632018 CCCTAGGTCCGGCCAAATGA 61.632 60.000 15.92 0.00 40.61 2.57
78 79 1.152963 CCCTAGGTCCGGCCAAATG 60.153 63.158 15.92 4.32 40.61 2.32
79 80 3.056754 GCCCTAGGTCCGGCCAAAT 62.057 63.158 15.92 0.02 39.39 2.32
80 81 3.723922 GCCCTAGGTCCGGCCAAA 61.724 66.667 15.92 4.28 39.39 3.28
84 85 4.525949 GAACGCCCTAGGTCCGGC 62.526 72.222 19.40 10.15 42.05 6.13
85 86 1.454479 TAGAACGCCCTAGGTCCGG 60.454 63.158 19.40 0.00 0.00 5.14
86 87 1.033746 TGTAGAACGCCCTAGGTCCG 61.034 60.000 15.23 15.23 0.00 4.79
87 88 1.136500 CTTGTAGAACGCCCTAGGTCC 59.864 57.143 8.29 0.00 0.00 4.46
88 89 1.471153 GCTTGTAGAACGCCCTAGGTC 60.471 57.143 8.29 0.00 0.00 3.85
89 90 0.535797 GCTTGTAGAACGCCCTAGGT 59.464 55.000 8.29 0.00 0.00 3.08
90 91 0.535335 TGCTTGTAGAACGCCCTAGG 59.465 55.000 0.06 0.06 0.00 3.02
91 92 1.204941 AGTGCTTGTAGAACGCCCTAG 59.795 52.381 0.00 0.00 0.00 3.02
92 93 1.203994 GAGTGCTTGTAGAACGCCCTA 59.796 52.381 0.00 0.00 0.00 3.53
93 94 0.037232 GAGTGCTTGTAGAACGCCCT 60.037 55.000 0.00 0.00 0.00 5.19
94 95 0.037232 AGAGTGCTTGTAGAACGCCC 60.037 55.000 0.00 0.00 0.00 6.13
95 96 1.067495 AGAGAGTGCTTGTAGAACGCC 60.067 52.381 0.00 0.00 0.00 5.68
96 97 1.989165 CAGAGAGTGCTTGTAGAACGC 59.011 52.381 0.00 0.00 0.00 4.84
97 98 2.029828 ACCAGAGAGTGCTTGTAGAACG 60.030 50.000 0.00 0.00 0.00 3.95
98 99 3.243907 ACACCAGAGAGTGCTTGTAGAAC 60.244 47.826 0.00 0.00 41.67 3.01
99 100 2.965831 ACACCAGAGAGTGCTTGTAGAA 59.034 45.455 0.00 0.00 41.67 2.10
100 101 2.598565 ACACCAGAGAGTGCTTGTAGA 58.401 47.619 0.00 0.00 41.67 2.59
101 102 3.006323 AGAACACCAGAGAGTGCTTGTAG 59.994 47.826 0.00 0.00 41.67 2.74
102 103 2.965831 AGAACACCAGAGAGTGCTTGTA 59.034 45.455 0.00 0.00 41.67 2.41
103 104 1.765314 AGAACACCAGAGAGTGCTTGT 59.235 47.619 0.00 0.00 41.67 3.16
104 105 2.036992 AGAGAACACCAGAGAGTGCTTG 59.963 50.000 0.00 0.00 41.67 4.01
105 106 2.324541 AGAGAACACCAGAGAGTGCTT 58.675 47.619 0.00 0.00 41.67 3.91
106 107 2.008242 AGAGAACACCAGAGAGTGCT 57.992 50.000 0.00 0.00 41.67 4.40
107 108 2.298729 AGAAGAGAACACCAGAGAGTGC 59.701 50.000 0.00 0.00 41.67 4.40
108 109 4.555262 GAAGAAGAGAACACCAGAGAGTG 58.445 47.826 0.00 0.00 43.65 3.51
109 110 3.254657 CGAAGAAGAGAACACCAGAGAGT 59.745 47.826 0.00 0.00 0.00 3.24
110 111 3.504134 TCGAAGAAGAGAACACCAGAGAG 59.496 47.826 0.00 0.00 0.00 3.20
111 112 3.487372 TCGAAGAAGAGAACACCAGAGA 58.513 45.455 0.00 0.00 0.00 3.10
112 113 3.832276 CTCGAAGAAGAGAACACCAGAG 58.168 50.000 0.00 0.00 40.57 3.35
113 114 2.029828 GCTCGAAGAAGAGAACACCAGA 60.030 50.000 0.00 0.00 40.57 3.86
114 115 2.333014 GCTCGAAGAAGAGAACACCAG 58.667 52.381 0.00 0.00 40.57 4.00
115 116 1.000955 GGCTCGAAGAAGAGAACACCA 59.999 52.381 0.00 0.00 40.57 4.17
116 117 1.715993 GGCTCGAAGAAGAGAACACC 58.284 55.000 0.00 0.00 40.57 4.16
117 118 1.341606 CGGCTCGAAGAAGAGAACAC 58.658 55.000 0.00 0.00 40.57 3.32
118 119 0.388649 GCGGCTCGAAGAAGAGAACA 60.389 55.000 0.00 0.00 40.57 3.18
119 120 0.388649 TGCGGCTCGAAGAAGAGAAC 60.389 55.000 0.00 0.00 40.57 3.01
120 121 0.317160 TTGCGGCTCGAAGAAGAGAA 59.683 50.000 0.00 0.00 40.57 2.87
121 122 0.317160 TTTGCGGCTCGAAGAAGAGA 59.683 50.000 0.00 0.00 40.57 3.10
122 123 1.325943 GATTTGCGGCTCGAAGAAGAG 59.674 52.381 0.00 0.00 41.03 2.85
123 124 1.359848 GATTTGCGGCTCGAAGAAGA 58.640 50.000 0.00 0.00 34.09 2.87
124 125 0.025513 CGATTTGCGGCTCGAAGAAG 59.974 55.000 4.31 0.00 37.05 2.85
125 126 1.966493 GCGATTTGCGGCTCGAAGAA 61.966 55.000 13.38 0.00 41.29 2.52
126 127 2.452813 GCGATTTGCGGCTCGAAGA 61.453 57.895 13.38 0.00 41.29 2.87
127 128 2.021931 GCGATTTGCGGCTCGAAG 59.978 61.111 13.38 0.00 41.29 3.79
136 137 4.096558 TTGGCGACCGCGATTTGC 62.097 61.111 8.23 9.73 43.06 3.68
137 138 2.202298 GTTGGCGACCGCGATTTG 60.202 61.111 8.23 0.00 43.06 2.32
138 139 1.977594 GATGTTGGCGACCGCGATTT 61.978 55.000 8.23 0.00 43.06 2.17
139 140 2.435938 ATGTTGGCGACCGCGATT 60.436 55.556 8.23 0.00 43.06 3.34
140 141 2.852495 AAGATGTTGGCGACCGCGAT 62.852 55.000 8.23 0.00 43.06 4.58
141 142 3.583276 AAGATGTTGGCGACCGCGA 62.583 57.895 8.23 1.16 43.06 5.87
142 143 3.083600 GAAGATGTTGGCGACCGCG 62.084 63.158 8.36 0.00 43.06 6.46
143 144 1.741770 AGAAGATGTTGGCGACCGC 60.742 57.895 5.75 5.75 41.06 5.68
144 145 1.361668 CCAGAAGATGTTGGCGACCG 61.362 60.000 1.61 0.00 0.00 4.79
145 146 0.321653 ACCAGAAGATGTTGGCGACC 60.322 55.000 1.61 0.00 38.03 4.79
146 147 1.079503 GACCAGAAGATGTTGGCGAC 58.920 55.000 0.00 0.00 38.03 5.19
147 148 0.976641 AGACCAGAAGATGTTGGCGA 59.023 50.000 0.00 0.00 38.03 5.54
148 149 2.271800 GTAGACCAGAAGATGTTGGCG 58.728 52.381 0.00 0.00 38.03 5.69
149 150 3.334583 TGTAGACCAGAAGATGTTGGC 57.665 47.619 0.00 0.00 38.03 4.52
150 151 5.089970 TGATGTAGACCAGAAGATGTTGG 57.910 43.478 0.00 0.00 40.38 3.77
151 152 6.596888 ACATTGATGTAGACCAGAAGATGTTG 59.403 38.462 0.00 0.00 39.68 3.33
152 153 6.715280 ACATTGATGTAGACCAGAAGATGTT 58.285 36.000 0.00 0.00 39.68 2.71
153 154 6.305272 ACATTGATGTAGACCAGAAGATGT 57.695 37.500 0.00 0.00 39.68 3.06
154 155 7.621428 AAACATTGATGTAGACCAGAAGATG 57.379 36.000 0.00 0.00 40.80 2.90
155 156 8.641498 AAAAACATTGATGTAGACCAGAAGAT 57.359 30.769 0.00 0.00 40.80 2.40
179 180 9.832445 AGAAGATTCTATAAACATCGGCTAAAA 57.168 29.630 0.00 0.00 35.34 1.52
180 181 9.261180 CAGAAGATTCTATAAACATCGGCTAAA 57.739 33.333 0.00 0.00 35.34 1.85
181 182 7.872993 CCAGAAGATTCTATAAACATCGGCTAA 59.127 37.037 0.00 0.00 35.34 3.09
182 183 7.232737 TCCAGAAGATTCTATAAACATCGGCTA 59.767 37.037 0.00 0.00 35.34 3.93
183 184 6.042093 TCCAGAAGATTCTATAAACATCGGCT 59.958 38.462 0.00 0.00 35.34 5.52
184 185 6.223852 TCCAGAAGATTCTATAAACATCGGC 58.776 40.000 0.00 0.00 35.34 5.54
185 186 8.839310 AATCCAGAAGATTCTATAAACATCGG 57.161 34.615 0.00 0.00 41.60 4.18
194 195 9.525826 AACTTGTTGAAATCCAGAAGATTCTAT 57.474 29.630 0.00 0.00 44.75 1.98
195 196 8.924511 AACTTGTTGAAATCCAGAAGATTCTA 57.075 30.769 0.00 0.00 44.75 2.10
196 197 7.830099 AACTTGTTGAAATCCAGAAGATTCT 57.170 32.000 0.00 0.00 44.75 2.40
197 198 7.095899 GCAAACTTGTTGAAATCCAGAAGATTC 60.096 37.037 0.00 0.00 44.75 2.52
199 200 6.041296 AGCAAACTTGTTGAAATCCAGAAGAT 59.959 34.615 0.00 0.00 36.48 2.40
200 201 5.360714 AGCAAACTTGTTGAAATCCAGAAGA 59.639 36.000 0.00 0.00 0.00 2.87
201 202 5.594926 AGCAAACTTGTTGAAATCCAGAAG 58.405 37.500 0.00 0.00 0.00 2.85
202 203 5.596836 AGCAAACTTGTTGAAATCCAGAA 57.403 34.783 0.00 0.00 0.00 3.02
203 204 6.707440 TTAGCAAACTTGTTGAAATCCAGA 57.293 33.333 0.00 0.00 0.00 3.86
204 205 5.403466 GCTTAGCAAACTTGTTGAAATCCAG 59.597 40.000 0.00 0.00 0.00 3.86
205 206 5.288804 GCTTAGCAAACTTGTTGAAATCCA 58.711 37.500 0.00 0.00 0.00 3.41
206 207 4.686091 GGCTTAGCAAACTTGTTGAAATCC 59.314 41.667 6.53 0.00 0.00 3.01
207 208 5.288804 TGGCTTAGCAAACTTGTTGAAATC 58.711 37.500 6.53 0.00 0.00 2.17
208 209 5.275067 TGGCTTAGCAAACTTGTTGAAAT 57.725 34.783 6.53 0.00 0.00 2.17
209 210 4.727507 TGGCTTAGCAAACTTGTTGAAA 57.272 36.364 6.53 0.00 0.00 2.69
210 211 4.400884 TCTTGGCTTAGCAAACTTGTTGAA 59.599 37.500 6.53 0.00 0.00 2.69
211 212 3.951037 TCTTGGCTTAGCAAACTTGTTGA 59.049 39.130 6.53 0.00 0.00 3.18
212 213 4.044426 GTCTTGGCTTAGCAAACTTGTTG 58.956 43.478 6.53 0.00 0.00 3.33
213 214 3.243068 CGTCTTGGCTTAGCAAACTTGTT 60.243 43.478 6.53 0.00 0.00 2.83
214 215 2.290641 CGTCTTGGCTTAGCAAACTTGT 59.709 45.455 6.53 0.00 0.00 3.16
215 216 2.548057 TCGTCTTGGCTTAGCAAACTTG 59.452 45.455 6.53 0.00 0.00 3.16
216 217 2.846193 TCGTCTTGGCTTAGCAAACTT 58.154 42.857 6.53 0.00 0.00 2.66
217 218 2.543777 TCGTCTTGGCTTAGCAAACT 57.456 45.000 6.53 0.00 0.00 2.66
218 219 2.095718 CCTTCGTCTTGGCTTAGCAAAC 60.096 50.000 6.53 0.00 0.00 2.93
219 220 2.151202 CCTTCGTCTTGGCTTAGCAAA 58.849 47.619 6.53 0.00 0.00 3.68
220 221 1.808411 CCTTCGTCTTGGCTTAGCAA 58.192 50.000 6.53 0.00 0.00 3.91
221 222 0.673644 GCCTTCGTCTTGGCTTAGCA 60.674 55.000 6.53 0.00 45.26 3.49
222 223 2.090693 GCCTTCGTCTTGGCTTAGC 58.909 57.895 0.00 0.00 45.26 3.09
228 229 0.250727 TCTTTGGGCCTTCGTCTTGG 60.251 55.000 4.53 0.00 0.00 3.61
229 230 0.875059 GTCTTTGGGCCTTCGTCTTG 59.125 55.000 4.53 0.00 0.00 3.02
230 231 0.602905 CGTCTTTGGGCCTTCGTCTT 60.603 55.000 4.53 0.00 0.00 3.01
231 232 1.004918 CGTCTTTGGGCCTTCGTCT 60.005 57.895 4.53 0.00 0.00 4.18
232 233 2.033194 CCGTCTTTGGGCCTTCGTC 61.033 63.158 4.53 0.00 0.00 4.20
233 234 2.032071 CCGTCTTTGGGCCTTCGT 59.968 61.111 4.53 0.00 0.00 3.85
234 235 3.431725 GCCGTCTTTGGGCCTTCG 61.432 66.667 4.53 2.34 44.97 3.79
240 241 1.080569 GCACAATGCCGTCTTTGGG 60.081 57.895 0.00 0.00 37.42 4.12
241 242 0.314935 AAGCACAATGCCGTCTTTGG 59.685 50.000 0.00 0.00 46.52 3.28
242 243 2.138596 AAAGCACAATGCCGTCTTTG 57.861 45.000 0.00 0.00 46.52 2.77
243 244 2.884639 AGTAAAGCACAATGCCGTCTTT 59.115 40.909 0.00 0.00 46.52 2.52
244 245 2.504367 AGTAAAGCACAATGCCGTCTT 58.496 42.857 0.00 0.00 46.52 3.01
245 246 2.185004 AGTAAAGCACAATGCCGTCT 57.815 45.000 0.00 0.00 46.52 4.18
246 247 2.989422 AAGTAAAGCACAATGCCGTC 57.011 45.000 0.00 0.00 46.52 4.79
247 248 3.128589 CCATAAGTAAAGCACAATGCCGT 59.871 43.478 0.00 0.00 46.52 5.68
248 249 3.694734 CCATAAGTAAAGCACAATGCCG 58.305 45.455 0.00 0.00 46.52 5.69
249 250 3.119173 TGCCATAAGTAAAGCACAATGCC 60.119 43.478 0.00 0.00 46.52 4.40
250 251 4.108699 TGCCATAAGTAAAGCACAATGC 57.891 40.909 0.00 0.00 45.46 3.56
256 257 3.147553 TGGTGTGCCATAAGTAAAGCA 57.852 42.857 0.00 0.00 40.46 3.91
275 276 1.043116 TACCTCCTGCTCCACCGATG 61.043 60.000 0.00 0.00 0.00 3.84
276 277 0.757188 CTACCTCCTGCTCCACCGAT 60.757 60.000 0.00 0.00 0.00 4.18
277 278 1.379977 CTACCTCCTGCTCCACCGA 60.380 63.158 0.00 0.00 0.00 4.69
278 279 0.970937 TTCTACCTCCTGCTCCACCG 60.971 60.000 0.00 0.00 0.00 4.94
279 280 0.827368 CTTCTACCTCCTGCTCCACC 59.173 60.000 0.00 0.00 0.00 4.61
280 281 1.478916 GTCTTCTACCTCCTGCTCCAC 59.521 57.143 0.00 0.00 0.00 4.02
281 282 1.359474 AGTCTTCTACCTCCTGCTCCA 59.641 52.381 0.00 0.00 0.00 3.86
282 283 2.153034 AGTCTTCTACCTCCTGCTCC 57.847 55.000 0.00 0.00 0.00 4.70
283 284 2.098443 CGAAGTCTTCTACCTCCTGCTC 59.902 54.545 10.81 0.00 0.00 4.26
284 285 2.096248 CGAAGTCTTCTACCTCCTGCT 58.904 52.381 10.81 0.00 0.00 4.24
285 286 1.135333 CCGAAGTCTTCTACCTCCTGC 59.865 57.143 10.81 0.00 0.00 4.85
286 287 1.135333 GCCGAAGTCTTCTACCTCCTG 59.865 57.143 10.81 0.00 0.00 3.86
287 288 1.272536 TGCCGAAGTCTTCTACCTCCT 60.273 52.381 10.81 0.00 0.00 3.69
288 289 1.183549 TGCCGAAGTCTTCTACCTCC 58.816 55.000 10.81 0.00 0.00 4.30
289 290 2.223852 GGATGCCGAAGTCTTCTACCTC 60.224 54.545 10.81 5.12 0.00 3.85
290 291 1.757699 GGATGCCGAAGTCTTCTACCT 59.242 52.381 10.81 0.00 0.00 3.08
291 292 1.202545 GGGATGCCGAAGTCTTCTACC 60.203 57.143 10.81 0.00 0.00 3.18
292 293 1.536284 CGGGATGCCGAAGTCTTCTAC 60.536 57.143 22.73 3.30 34.88 2.59
293 294 0.744874 CGGGATGCCGAAGTCTTCTA 59.255 55.000 22.73 0.00 34.88 2.10
294 295 1.517832 CGGGATGCCGAAGTCTTCT 59.482 57.895 22.73 0.00 34.88 2.85
295 296 1.521681 CCGGGATGCCGAAGTCTTC 60.522 63.158 28.88 2.18 34.88 2.87
296 297 0.974010 TACCGGGATGCCGAAGTCTT 60.974 55.000 28.88 6.18 34.88 3.01
297 298 0.974010 TTACCGGGATGCCGAAGTCT 60.974 55.000 28.88 6.13 34.88 3.24
298 299 0.529992 CTTACCGGGATGCCGAAGTC 60.530 60.000 28.88 0.00 34.88 3.01
299 300 1.262640 ACTTACCGGGATGCCGAAGT 61.263 55.000 28.88 24.78 34.88 3.01
300 301 0.107848 AACTTACCGGGATGCCGAAG 60.108 55.000 28.88 24.11 34.88 3.79
301 302 0.325602 AAACTTACCGGGATGCCGAA 59.674 50.000 28.88 13.48 34.88 4.30
302 303 0.325602 AAAACTTACCGGGATGCCGA 59.674 50.000 28.88 4.80 34.88 5.54
303 304 1.170442 AAAAACTTACCGGGATGCCG 58.830 50.000 20.13 20.13 0.00 5.69
322 323 9.936759 AGAAACACCTTTACAGAAATTGAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
323 324 9.364989 CAGAAACACCTTTACAGAAATTGAAAA 57.635 29.630 0.00 0.00 0.00 2.29
324 325 8.527810 ACAGAAACACCTTTACAGAAATTGAAA 58.472 29.630 0.00 0.00 0.00 2.69
325 326 8.062065 ACAGAAACACCTTTACAGAAATTGAA 57.938 30.769 0.00 0.00 0.00 2.69
326 327 7.639113 ACAGAAACACCTTTACAGAAATTGA 57.361 32.000 0.00 0.00 0.00 2.57
327 328 9.450807 CTTACAGAAACACCTTTACAGAAATTG 57.549 33.333 0.00 0.00 0.00 2.32
328 329 9.403583 TCTTACAGAAACACCTTTACAGAAATT 57.596 29.630 0.00 0.00 0.00 1.82
329 330 8.974060 TCTTACAGAAACACCTTTACAGAAAT 57.026 30.769 0.00 0.00 0.00 2.17
330 331 8.795842 TTCTTACAGAAACACCTTTACAGAAA 57.204 30.769 0.00 0.00 29.99 2.52
331 332 8.974060 ATTCTTACAGAAACACCTTTACAGAA 57.026 30.769 0.00 0.00 37.82 3.02
334 335 9.787435 ACATATTCTTACAGAAACACCTTTACA 57.213 29.630 0.00 0.00 37.82 2.41
337 338 8.918202 TGACATATTCTTACAGAAACACCTTT 57.082 30.769 0.00 0.00 37.82 3.11
378 379 3.306472 TGGTAGACTGGTTGCCTTTTT 57.694 42.857 0.00 0.00 0.00 1.94
379 380 3.157087 CATGGTAGACTGGTTGCCTTTT 58.843 45.455 0.00 0.00 0.00 2.27
380 381 2.555227 CCATGGTAGACTGGTTGCCTTT 60.555 50.000 2.57 0.00 0.00 3.11
381 382 1.004745 CCATGGTAGACTGGTTGCCTT 59.995 52.381 2.57 0.00 0.00 4.35
382 383 0.620556 CCATGGTAGACTGGTTGCCT 59.379 55.000 2.57 0.00 0.00 4.75
383 384 0.394352 CCCATGGTAGACTGGTTGCC 60.394 60.000 11.73 0.00 0.00 4.52
451 452 1.668101 GGGAGTAGTGGCTCACTCGG 61.668 65.000 10.60 0.00 41.21 4.63
452 453 0.681564 AGGGAGTAGTGGCTCACTCG 60.682 60.000 10.60 0.00 45.36 4.18
455 456 0.820871 CTGAGGGAGTAGTGGCTCAC 59.179 60.000 0.00 0.00 39.12 3.51
461 462 2.691011 GGACTAAGCTGAGGGAGTAGTG 59.309 54.545 2.29 0.00 0.00 2.74
471 472 4.859304 TCTAAAACACGGACTAAGCTGA 57.141 40.909 0.00 0.00 0.00 4.26
472 473 6.073222 ACAAATCTAAAACACGGACTAAGCTG 60.073 38.462 0.00 0.00 0.00 4.24
473 474 5.995897 ACAAATCTAAAACACGGACTAAGCT 59.004 36.000 0.00 0.00 0.00 3.74
474 475 6.147328 AGACAAATCTAAAACACGGACTAAGC 59.853 38.462 0.00 0.00 31.46 3.09
475 476 7.653767 AGACAAATCTAAAACACGGACTAAG 57.346 36.000 0.00 0.00 31.46 2.18
476 477 9.199982 CTAAGACAAATCTAAAACACGGACTAA 57.800 33.333 0.00 0.00 33.57 2.24
544 2164 7.106439 ACGTTATGGCATTATGGATTTTGAA 57.894 32.000 4.78 0.00 0.00 2.69
551 2171 7.809546 TTTTCATACGTTATGGCATTATGGA 57.190 32.000 4.78 0.00 36.81 3.41
654 2297 8.421784 ACTCCGCATATTAACTTTAGATTGAGA 58.578 33.333 0.00 0.00 0.00 3.27
655 2298 8.594881 ACTCCGCATATTAACTTTAGATTGAG 57.405 34.615 0.00 0.00 0.00 3.02
665 2308 7.254658 CGGTCATTTTTACTCCGCATATTAACT 60.255 37.037 0.00 0.00 35.01 2.24
666 2309 6.849305 CGGTCATTTTTACTCCGCATATTAAC 59.151 38.462 0.00 0.00 35.01 2.01
667 2310 6.762187 TCGGTCATTTTTACTCCGCATATTAA 59.238 34.615 0.00 0.00 40.81 1.40
674 2317 2.740447 ACTTCGGTCATTTTTACTCCGC 59.260 45.455 0.00 0.00 40.81 5.54
676 2319 4.995487 ACTCACTTCGGTCATTTTTACTCC 59.005 41.667 0.00 0.00 0.00 3.85
691 2334 3.749404 CGTGCAGTAGAGTACTCACTTC 58.251 50.000 24.44 18.08 36.76 3.01
773 2420 1.135112 CATCGATCAGTTGACCGGTCA 60.135 52.381 33.23 33.23 37.91 4.02
774 2421 1.134367 TCATCGATCAGTTGACCGGTC 59.866 52.381 28.17 28.17 30.45 4.79
775 2422 1.182667 TCATCGATCAGTTGACCGGT 58.817 50.000 6.92 6.92 30.45 5.28
776 2423 2.196749 CTTCATCGATCAGTTGACCGG 58.803 52.381 0.00 0.00 30.45 5.28
832 2479 1.301677 GGAAGAAGTGAAGCTGCCGG 61.302 60.000 0.00 0.00 0.00 6.13
844 2491 1.407989 GGGAGCAGGTGATGGAAGAAG 60.408 57.143 0.00 0.00 0.00 2.85
871 2518 1.335506 GCGAGGTACATGAGAGCTAGC 60.336 57.143 6.62 6.62 36.22 3.42
872 2519 1.069568 CGCGAGGTACATGAGAGCTAG 60.070 57.143 0.00 3.63 0.00 3.42
873 2520 0.945099 CGCGAGGTACATGAGAGCTA 59.055 55.000 0.00 0.00 0.00 3.32
882 2530 3.755628 GGGCAGACGCGAGGTACA 61.756 66.667 15.93 0.00 39.92 2.90
983 2631 3.409570 GCCATGACTATGATGTGATGCT 58.590 45.455 0.00 0.00 36.36 3.79
988 2644 1.516161 CGGGCCATGACTATGATGTG 58.484 55.000 4.39 0.00 36.36 3.21
1234 2890 1.196104 TACCCTGGGTGGTAGTGCAC 61.196 60.000 28.64 9.40 39.91 4.57
1434 3090 2.743928 CAGCTGGAAGGCGTGGTC 60.744 66.667 5.57 0.00 37.29 4.02
1633 3289 1.019278 CAGTAATTCTGCGGGCACGT 61.019 55.000 11.45 0.00 43.45 4.49
1675 3333 1.805345 CCGACGACAGAGAACTACAGT 59.195 52.381 0.00 0.00 0.00 3.55
1678 3336 4.118410 TCTATCCGACGACAGAGAACTAC 58.882 47.826 0.00 0.00 0.00 2.73
1695 3355 0.601311 GCCGTGGAGCCACATCTATC 60.601 60.000 18.85 0.00 46.47 2.08
1705 3365 1.738099 CTGTGTACAGCCGTGGAGC 60.738 63.158 0.00 0.00 37.15 4.70
1716 3376 3.380479 TGTGTAAGCCTGACTGTGTAC 57.620 47.619 0.00 0.00 0.00 2.90
1727 3387 5.744666 TTACAGTCAAAGTTGTGTAAGCC 57.255 39.130 4.13 0.00 31.91 4.35
1751 3411 8.327941 TGTTGTTTCCATGTCAAAATTTGAAA 57.672 26.923 10.27 5.42 42.15 2.69
1875 3823 9.085250 GCTCGCCTATATCTAAATAGTAAAACC 57.915 37.037 0.00 0.00 0.00 3.27
1876 3824 9.635520 TGCTCGCCTATATCTAAATAGTAAAAC 57.364 33.333 0.00 0.00 0.00 2.43
1881 3829 8.634444 CCTATTGCTCGCCTATATCTAAATAGT 58.366 37.037 0.00 0.00 0.00 2.12
1882 3830 7.596995 GCCTATTGCTCGCCTATATCTAAATAG 59.403 40.741 0.00 0.00 36.87 1.73
1883 3831 7.434492 GCCTATTGCTCGCCTATATCTAAATA 58.566 38.462 0.00 0.00 36.87 1.40
1884 3832 6.284459 GCCTATTGCTCGCCTATATCTAAAT 58.716 40.000 0.00 0.00 36.87 1.40
1885 3833 5.661458 GCCTATTGCTCGCCTATATCTAAA 58.339 41.667 0.00 0.00 36.87 1.85
1886 3834 4.202020 CGCCTATTGCTCGCCTATATCTAA 60.202 45.833 0.00 0.00 38.05 2.10
1887 3835 3.315470 CGCCTATTGCTCGCCTATATCTA 59.685 47.826 0.00 0.00 38.05 1.98
1888 3836 2.099921 CGCCTATTGCTCGCCTATATCT 59.900 50.000 0.00 0.00 38.05 1.98
1889 3837 2.464865 CGCCTATTGCTCGCCTATATC 58.535 52.381 0.00 0.00 38.05 1.63
1890 3838 1.471676 GCGCCTATTGCTCGCCTATAT 60.472 52.381 0.00 0.00 42.71 0.86
1891 3839 0.108804 GCGCCTATTGCTCGCCTATA 60.109 55.000 0.00 0.00 42.71 1.31
1913 3861 3.560278 CGACCGGCCGAAATTCCG 61.560 66.667 30.73 15.79 44.89 4.30
1914 3862 3.872728 GCGACCGGCCGAAATTCC 61.873 66.667 30.73 5.67 34.80 3.01
1933 3881 2.751259 AGAGCAAATCGTACGTACCTGA 59.249 45.455 19.67 12.40 0.00 3.86
1935 3883 3.863142 AAGAGCAAATCGTACGTACCT 57.137 42.857 19.67 9.65 0.00 3.08
1961 3909 6.097839 AGCAGTTAAGGGAAATGTATCTACGA 59.902 38.462 0.00 0.00 35.52 3.43
2003 3951 5.514169 TGAACATGGGTCATGGCTTTATTA 58.486 37.500 11.85 0.00 45.16 0.98
2004 3952 4.352009 TGAACATGGGTCATGGCTTTATT 58.648 39.130 11.85 0.00 45.16 1.40
2006 3954 3.448093 TGAACATGGGTCATGGCTTTA 57.552 42.857 11.85 0.00 45.16 1.85
2007 3955 2.307496 TGAACATGGGTCATGGCTTT 57.693 45.000 11.85 0.00 45.16 3.51
2018 3966 1.952296 GGCTGCTAAGGATGAACATGG 59.048 52.381 0.00 0.00 0.00 3.66
2183 4131 2.744202 CGAGGATTTGTGCTACAAGCTT 59.256 45.455 0.00 0.00 42.97 3.74
2196 4144 3.071874 TCATGCTGGAAACGAGGATTT 57.928 42.857 0.00 0.00 0.00 2.17
2223 4174 0.254178 AGCTATGAGGTTGCAGGTGG 59.746 55.000 0.00 0.00 0.00 4.61
2226 4177 2.036475 ACGATAGCTATGAGGTTGCAGG 59.964 50.000 11.94 0.00 42.67 4.85
2238 4189 2.330393 GCGACGCCACGATAGCTA 59.670 61.111 9.14 0.00 42.67 3.32
2294 4245 2.651105 TACTGCAACGATGGGGCGA 61.651 57.895 0.00 0.00 34.83 5.54
2349 4300 6.097270 ACAATGGTGGATGGAAAATGATACAG 59.903 38.462 0.00 0.00 0.00 2.74
2428 4379 6.676950 TGCTACAAACATAAGTGTGAAATGG 58.323 36.000 0.00 0.00 38.92 3.16
2435 4386 5.766150 TGCTTTGCTACAAACATAAGTGT 57.234 34.783 0.00 0.00 41.28 3.55
2439 4390 5.806502 GCATCATGCTTTGCTACAAACATAA 59.193 36.000 1.02 0.00 40.96 1.90
2515 4466 1.755380 GTCCCATCTAGCTACAACCGT 59.245 52.381 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.