>input_sequence_73738
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---------------ATGGCCCGCACCCTCGCCGTCGCCGTCGTGTTGGCGCTCAGCCTCCTCGTCTTCCTCAGCGCCTG
CCCGTGCGCCGACGCGCGGCCGATGTCCGCGAGGCCGGTGAGCTCCGGGACGTCCGCGCTTGCACTGCCACCGTCGGCGT
CCGAGGGCGTGGCGCACTGGCGTGCCGCCGACGCGGCCGCCAGGGCGGGGAAGTGGCTGCCGTACTACCAGTACCCGGGC
GGCGCCGGCGTGCACTACCACCCAGGGTACCCGAAGTACCCGGGGTACCCGGCGGAGGGAAAGCCGATGATGTGGGGGTC
GGGCACGCCACCGGAGCTGGGCGCCTACGCGGCGAGCGGCAGGCAGCTTGGGAAGTCGCCGTACGGCGATGAGACCCGGC
GGGAGCAGGTCGCCATGTGGGCTTCGCTGCTCAACCCGTCCAAGGGGCCGACCACGCCTTCCAGCTGGCTGCCGGCGAAT
GGCGGCGACGAGCCGGCGGATCAGGCCCGCGACGAGCCTAAGGCGTACGACGCCGCTGCCGAAGGGACGGAGATGGACGT
GCCCCCGGGCGGCGGCGGCGTTCAGACCGGCCAGCAGCCCAAGTGGGGGTTCTACCCCGGGAACAAGAATGGCAAGTGA-
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>chr5A_1_TraesCS5A01G376600
GGGCTCTAATTCCGATCAACAAACGTTGGACAGCCTTGGCCTTGTCAGGAAACGTGTGAGATTTGTGTTCCCTAGCTTCA
TTTGGCCGGACCTAGGGCGTTCTACAAGCACTCTCTGGTGTTCTCTTCTTCGAGCCGCAAATCGCGGTCGCCAACATCTT
CTGGTCTACATCAATGTTTTTTTAGCCGATGTTTATAGAATCTTCTGGATTTCAACAAGTTTGCTAAGCCAAGACGAAGG
CCCAAAGACGGCATTGTGCTTTACTTATGGCACACCATCGGTGGAGCAGGAGGTAGAAGACTTCGGCATCCCGGTAAGTT
TTTTTTTCAATTTCTGTAAAGGTGTTTCTGTAAGAATATGTCATATTTCTGGAGAAAAAAAAAGGCAACCAGTCTACCAT
GGGAGCCGGCAAGCGGTAGGCATGGTTGACCACATATGGCCTGTGGCACGGCCGAGTGAGCCACTACTCCCTCAGCT---
-------TAGTCCGTGTTTTAGATTTGTCTTAGGTCAAACTTTGTAAACATTG---------------------------
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--------------------------------------------------------------ATTAATTTTATATGAAAA
AACTTCAAAATCCATAA-TGCC------ATAACGTATGAAAATATATTCT----AATGCATCTAGGTATTAG--------
----AAAACGGTGATATTTTTCTTTGAAAACTTGATTCAGACTTTATAAAATTTGATCTCAATCTAAAGTTAATATGCGG
AGTAAAAATGACCGAAGTGAGTACTCTACT----GCACGCATCTCATCCAATGCGTGACCAACCTACCATTCTAGCCCCG
TCATTGAATCACCTGTGACTGACCGGTCAACTGATCGATGAAGCAACAGTAGCTACGAAGCAGGTACTCCTCACACGCCC
GGCAGCTTCACTTCTTCCATCACCTGCTCCCCAGCTAGCT-AGCTCTCATGTACCTCGCGTCTGCCCGGAGTTCCTCCCG
TATATTATGGCGCTGCCATCATGCTTCGCCACATCAGTTCAAACAAGCCACAGCTCGAGCTAAGCTAGCTAGCA------
--TCACATCATAGTCATGGCCCGCACCCTCGCCGTCGCCGTCGTGTTGGCGCTCAGCCTCCTCGTCTTCCTCAGCGCCTG
CCCGTGCGCCGACGCGCGGCCGATGTCCGCGAGGCCGGTGAGCTCCGGGACGTCCGCGCTTGCACTGCCACCGTCGGCGT
CCGAGGGCGTGGCGCACTGGCGTGCCGCCGACGCGGCCGCCAGGGCGGGGAAGTGGCTGCCGTACTACCAGTACCCGGGC
GGCGCCGGCGTGCACTACCACCCAGGGTACCCGAAGTACCCGGGGTACCCGGCGGAGGGAAAGCCGATGATGTGGGGGTC
GGGCACGCCACCGGAGCTGGGCGCCTACGCGGCGAGCGGCAGGCAGCTTGGGAAGTCGCCGTACGGCGATGAGACCCGGC
GGGAGCAGGTCGCCATGTGGGCTTCGCTGCTCAACCCGTCCAAGGGGCCGACCACGCCTTCCAGCTGGCTGCCGGCGAAT
GGCGGCGACGAGCCGGCGGATCAGGCCCGCGACGAGCCTAAGGCGTACGACGCCGCTGCCGAAGGGACGGAGATGGACGT
GCCCCCGGGCGGCGGCGGCGTTCAGACCGGCCAGCAGCCCAAGTGGGGGTTCTACCCCGGGAACAAGAATGGCAAGTGAA
GATGGCGTA--CGTGCCCGCAGAATTACTGCACTGGCACAAGACTGGATTATACTG-TAGTTCTCTGTCGTC-GGATAGA
TGTGGCTCCACGGCTGTACACAGTCAGGCTTACACAACTTTGACTGTAATTTTCAAATTTTGACATGGAAACAACATTGT
TAC------------------------ATAATCGATGTTACTTTTGAAAGTTATGTTATCTGTAAG--------------
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----------ACTGTAACACGTAGTTATAGAAAGGTTTACAGGATAAACATGCTAGGATATTGGTTTTACTATTTAGATA
TAGGCGAGCAATAGGCGCACCGGAATTTCGGCCGGTCGCATCAGGTACGTACGATTTGCTCTTAATAGTCGTAGATACAT
TTCCCTTAACTGCTTCGCTAGTTAAAAAAATAATAAAGCCATGACCCATGTTCATCCTTAGCAGCCCCGTGACCCCCCAG
CTCGCTGGCCGTCCACGTCGGCGCCGACCGCCGCCGGCCACCGCCCTCGTCGCCGGTGGTCGCCCTCACCACCGCCGGCC
GCCGCCCTCGCACAACCTCCTCCCCCGCGTTCGAAAAAAATCGCTCCATGAAGCTTGTAGCACAAA---TCCTCGTTTCC
AGCATGAAAAACCCCACCTGCAACCTCATAGCTATCGTGGCGTCGCCGTCCTCGTCCCCGGGCAGCCACTCGTCGTTGCT
GCATTCGCCCCATCGTTGCAGTACATTGTTTATTTGCTTGTATCAATTTGTGTAGCTGGCTGTATCATTTTCCATCCACC
ATTGTAGCATCTTCCTTCCTCGTCCTTCCATCTTGTACCTGTACCATTGCCGGTTGTACCATTTCACACTTATGTTTGTA
GCAAAGCATGATGCTGGTTGTAGCAAAAATCAAAATATCATTGTGCGATGCAGCAAATCATGACGACGGTTGTAGCTAGA
TGGGACACCGGTGGTAGCAATTTTCAATGCCGGTTGTAGCATGCAGCACAAATCCGCGACACCCATCCTCGCTAAATGTC
GCTTGGAGCAGCGT
>chr5D_378
AAAAAA--------------------------------------------------------------------------
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----------------------------------------------------------------GCAACCAGTCTACCAT
GGGAGCCGGCAAGCGGTAGGTCCG------------TGGTCTGCGGCACGGGTGAATGAGCTACTACTCCCCTCCTCAGC
TACTTTCTAGTCCATGTTTTAGATTTGTCTTAAGTTAAACTTTGTAATCATTGATTAACTTTATATTGAGCTGAAGGAAA
TCTACACTCTAACCCCCCCACCTCTCGTCCCCCGCGTCGCCGCCCTGGCGACACGGGCGGAAGACCCAAACCGCGCCGTC
GGCTACCCTCCTCGTCGCTCTCCCTCCCCTCGCCGTCGCCGGAGGACACCGCCGAGCTAAGCTCGCGCGGCGGACGGCGG
CGGCGGGGCCCTATTCTCGCCTGGCGGCGGCAGATCTCGGTGGGGGAGGCTCGGTCCACCTCGGCTACACTGCGCGGTAG
TTCTAGCGACTGCTCGCAGCGGCGCTCATCTCCGGCAATTCAAAGGGGTTGGCGCCTCTTTCTTCTCCGCGGTGTAGCGG
CTGGCTCGCAGATCTGACCTTCGACCGGCGGCTCCTCTTCGGCGGCCAGGGTGGGGTGGCAGCTCCCCTTCTGCCATGTA
GGTGCTCGTCTCCGCGCGGATCTGCACCAGGCCAGCTTCTAGAGGCTTCCTCGGCAGTCCTGTGGCGGTGGCTCGCCGAT
CTGGGCGGCTGTGGCCGGATCGACGAGTTGCGCGGGTTTGGCCCGGCAGCTCGTTCCGGTGAGTTCGGGATGGGGTGGCA
GCCCTTCCTCTCAGCTTGTCCTCTCCGACGTGTTTGGGCGGGGTGGCAGCCCCCCTTCTTGGTCCTGGTGCTCGGCGTTC
TGGTCTTTGGTCTCTTCTGCGGCAGTGTGGCTGTGGCGGGTTGCCTGATCTGGCCTGCGGTTGGGTCTGGCTCGCTAGCG
CTTGTTGGCGGCGAGGTGGGTGGCTCCTGCGTGGTGGTGACGCCGTCATCCCACAGGAGGTGTGTGGGCCAGTGGTGGTG
CGGGCCGGCGGCGCTTTGTCGTCGGTGGCGTGGGGATGTGCTGTCAAGTCTACTCCGAGCGAAAGTTTGCCCGGCTCTTG
CCGGCCGACGGTGGCGGCACCTACGGGCGTCGTTTCCCTTCTTGAAGGCGCCGTCGTGGAGTTTCTTCGACACGCTTCAT
TCTCGGATCTGGTTCTTCGGGCGAAAGCCTAGACCCATCTGGGTTGGGCAACGACGTCGCCCCCGCGGCGTTTCCCCCTT
TGGGGCGTTGCTTTGAAGACCGATGATCCTTCTCCGCGCTTCCCTTGGGCTGGACATACACGGCATCACGTTGGCAGGTG
GCCAACTGGTGATGCGAGGTGGGTGTGGCGTTGTGATGTGTGTGGCGACGACGATGGGGGCGAGCAGAGCCGGGTCGCGG
CTTGTCCTTCTGATGTCGAAGGTCCGGTGCGCCAATGGGTGTGCATATGCTGATTTCTGGCTGTGATAGAGAAGTCGGAG
CTGCGGGCGGCAGGGCCACTGCGGCAACGATGACTCCATGAGGGCGGTTTTCAGTGGACGGTGCTCTCCGGATGTTGCGT
TGGACTAGGTCGATGCGAGGCTTGCAACTTTCTCCCGTGAAACTCGTCAGCAAAATCGGAGTTGTCCTGTCATCGACGCT
TTGGTCGACTGTTTGGCGTTTGTGGCCAAGTCGTCCACGAGTGCCTCATGTGGGGTTTGTAATCTTGGTTTTCGCCCGGT
TTTCCTCTAATTAACCGGGCAACTCTCTTCTTCTTAATCAATGAAAATCCGTTTCAAAAAAAATTAACTTTATATTAAAA
AAAGTCAACAACTATGA-TACCAAATAAATAAAATATGAAAATATATACTCTGCAATGCATCTG---ATATTTATTTGGC
ATTAAAAACGGTGATATTTTCTCAAC-AAACTTGATCAAAATTTTATAATATTTGACTTCAGTGAAGGC-TCATATACAA
AATAAAAATAACCAGAGCGAGTACTCTACTTGAAGCACGCATCTCATCCAGTGCGTGACCAACCTACCATTCTAG-CCCG
TCACTGAATCACCTGTGAC----CGGTCAACTGATCGATGAAGCAACAGTAGCTACGAAGCAGGTACTCCTCACACGCTC
GGCAGCTTCAGTTCTTCCATCACCTGCTCGCTAGCTACTAGAGCTCTCACGTACCCCGCGTCTTCCCGGAGTTCCTCCCG
TATATTATGGCGCTGCCATCATGCTTCGCCACATCAGTTCAAACAAGTTACAGCTCGAGCTAAGCTAGCTCGCA------
--TTACATCATAGTCATGGCCCGCACCCTCGCCGTCGCCGCCGTGACGGCGCTCAGCCTCCTCGTCTTCCTCCACGACTG
CCCGTGCGCCGATGCGCGTCCGGTGTCCACGAGACCCGCGAGCTCCGGGACGTCTGCGCTTGCAGTGGCACCGTCGGCGT
CCGAGGGCGCGGCGCACTGGCGTGCCGCCGACGCGGCCGCCAGGGCGGGGAAGTGGCTGCCGTACTATCGGTACGCGGGC
GGCGGCGGCCTGCACTACCACCCAGGGTACCCGAAGTACCCGGCGTACCCGGCGGAGGGAAAGCCGATGATGTGGGGGTC
GGGCACGCCACCGGAGCTGGGCGCCTACGCGGCGAGCGGCAGGCAGCTTGGGAAGTCGCCGTACGGCGATGAGACCCGGC
GGGAGCAGGTCGCCATGTGGGCTTCGCTGCTCAACCCGTCCAAGGGGCCAACCACGCCTACCAGCTGGCTGCCGGCGAAT
GGCGGCGACGAGCCGGCCGATCAGGCCCGCGACGAGCCTAAGGCGTTTGACGGCGCTGCCGAAGGGACGGAGATGGAGGT
TCCCCCCGGCGGCGGCGGCGTTCAGACCGCCCAGCAGCCTAAGTGGGGGTTCTACCCCGGGAACAAGAATGGCAAGTGAA
GATGGCGT--GCGTGCCCGCAGAATTACTGCACTGGCTCAAGACTGGATTATCCTCCTAGTTCTCTGCCGTC-GAATAGA
TGTGCCTCGACGGCTATCCGCAGTCAAGCTTACACAATTTTGACTGTAATATTTAAATTTTGACATGGAAACAACATTGT
TAC------------------------ATGATCGAAGTTACTTTTGAAAGTTATGTTATCTGTAAG--------------
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----------ACTGTAACACGTAGTTGTAGAGAGGATTACAGGATAAACATGCTA-------------------------
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>chr5B_478
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-------TAGTCCGTGTTTTAGATTTGTCTTAAATCAAACTTTGTAGACATTG---------------------------
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--------------------------------------------------------------ACTAACTTTATAATAAAA
AACATCAAACATCCACGGTACCAAATAAATAAAATATAAAAATATATTCTATGCAATGCATCTAATAATATTTCTTTGGT
ATT-AAAACGGTGATATTTTTTTCTCTAAACTTGA-TCAAATTTTATAAAGGTTGACTTCAGTCAAAGC-TAATATACAG
AGGAAAAATGACAAAAGTGAGTACTCTACTTGAAGCACGCATCTCATCCAATGCGTGACCAACCTACCATTCTAGCCCCG
TCATTGAATCGCCTGTGAC----CGGTCAACTGATCGATGAAGCAACAGTAGCTACGAAGCAGGTACTCACG---CGCTC
GGCAGCTTCAGTTCTTCCATCACCTGCTCGCCAGCTACTAGAGCTCTCACGTACGCCGCGTCTTCCCGGAGTTCCTCCCG
TATATTATGGCGCTGCCATCATGCTTCGCCACATCAGTTCAAACAAGTCACAGCTCGAGCTAAGCTAGCTCGCATTACAT
ATTTACATCATAGTCATGGCCCGCATCCTCGCCGTCAACGCCGTGACGGCGCTCTGCCTCCTCAGCTTCCTCCGCGCCTG
CCCGTTCGCCGACGCCCGGCCAATGCCCGCGAGGCCGGTGAGCTCCGGGACGTCCGCGCTTGCACTGCCACCGTCGGCCT
TCGAGGGCGCGGCGCACTGGCGTGCCGCCGACGCGGCCGCGAGGGCGGGGAAGTGGCTGCCGTACTACCGGTACGCAGGC
GGCGGCGGCCTGCACTACCACCCAGGGTACCCGAAGTACCCGGGGTACCCGGCAGAGGGAAAGCCGATGATGTGGGGGTC
GGGCACGCCACCGGAGCTGGGCGCCTACGCGGCGAGCGGCAGGCAGCTTGGGAAGTCGCCGTACGGCGATGAGACCCGGC
GGGAGCAGGTCGCCATGTGGGCTTCGCTGCTCAACCCGTCCAAGGGGCCAACCACGCCTACCAGCTGGCTGCCGGCGAAT
GGCGGCGACGAGCCGGCGGATCAGGCCCGCGACGAGCCTAAGGCGTACGACGGCGCTGCCGAAGGGACGGAGATGGACGT
GCCCCCGGGCGGCGGCGGCGTTCAGACCGCCCAGCAGCCCAAGTGGGGGTTCTACCCCGGGAACAAGAATGGCAAGTGAA
GATGACGTGCGCGTGCCCGCAGAATTACTGCACTGGCACAAGACTGGATTATG---CTAGTTCTTTGTCGTCAGAATAGA
TGTGCCTCGACGGCTATACAGAGTCAAGCTTACACAACTTTGACTGTAATATTCAAATTTTGACATGTAATCTCATGGGA
AAAATCATCGGCAATACCAGATTACCAATGATCGAAGTTACTTTTGAAAGTTATGCTTTCTGTAAGGCTAGTCATAGTGG
GAGGAACTTAGTAGTAACATCAATGCCACGTAGGACAAAAAGCTGATGTGGCAAACATTTAATGAGGAAAGAGGAAGGGG
TGGTAACATAGCTAGTTATCGGAACATCACATATTCTAAGACAGTATGAATATATAAGCTAATAAATAGAGGTTTGCATG
ATGTTCCTCCCCACTATAGTGATGGTAACATAGCATAGGATAACGTGTATGTTACTGCTCAAAGTTCCTCACCACTATAA
CTAGCCTAAGACTGTAACACGTAGTTATAGAAAGGATTACATGATATAAACATACTA-----------------------
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>chr2B_1893
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-------------------------------------------------------------------------------A
TAGGCGAGCAATAGGCGCCGGTG--TTTCGGCCGGTCGCACCGGGTACATACGATTTGCTCTTAATAGCCGTAGATACCT
TTCCATCAACTGCTTCGCTAGTTTAAAAAAATAATAAGCCATGACGCATGTTCATCCCTAGCAGCCTCGTGATCCCCCAG
CTTGCTGGCCGTCCACGTCG----------CCGCCGGCCACCGCGCTCGTCGCCGGTAGTCGCCCTCGTCACCGCCGGCC
GCCGCCCTCGCACAACCTCCTCCCTCGCGTTCGAAAAAAATCGCTCCATGGAGCTTGTAGCACGAATCCTCCTCGCTTCC
AGCATGAAAAACCTCATCTGCAACCTCACAGCTACCGTGGCGTCGCCGTCGTCGTCCCCGGGCAGCCACTCGTCGTTGCT
GCATCCGCCCCATCGTCGCAGTGCAGTGCTTATTTGCTTGTATCAATTTGTGTAGCTGGTTGTCTCATTTTCCATTCACC
ATTGTAGCATCTTCCTTCCTCGTTCTTCCATCT-GTACCTGTACCGGTGCCGGTTGTAGCATTTCGCAC-TATGTTTGTA
GCAAAACATGATGCTGGTTGTAGCAAAAATCAAAATATCATTGTGCGATGCAGCAAATCATGACGGCGGTTGTAGCTAGA
TGGGACGCCGCTGGTAGCAATTTTCAATGCCGGTTGTAGCATGCAACACAAATCCGCGACGCCCATCCTCGCTAAATGTC
GCTTGGAGCAGCG-
>chr3A_1913
CCGA----------------------------------------------------------------------------
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-----------------------AATTTCGGCCGGTCGCACCCGGTACGTATGATTTGCTCTTAATAACCGTAGATATAT
TTTCCTTAACTGCCTCACTAGTT--AAAAAATAATAAGCCATGACGCATGTTCATTCTTAGCAGCCCCGTGA-CCCCCAG
CTCGCTGGCCGTCCACGTCA----------GCGCCGGCCGCCG---------CCGGTGGTCGCCCTCGTCACCGCGGGCC
GCCGCCCTCGCATAACCTCCTTCCCCGTGTTCGAAAAAAATCGCTTCATGGAGCTTGTAGCACGAA---TCCTTGTTTCC
AGCATGAAAAACCTCATCTGCAACCTCACAGCTATCGTGGCGTCATCGTCCTCGTCCCCGGGCAGTCACTCGTCGTTGCT
GCATCCGCCCCATCGTTGCAGTATAGTGTTTATTTGCTTGTATCAATTTGTGTAGCTGGTTGTATCATTTTCCATCCACC
ATTGTAGCATCTTCCTTCCTCGTCCTTCCATCTTGTACCCGTACCGCTGCCGGTTGTAGCATTTCGCAC-TATGTTTGTA
GCAAAGCATGATGCTGGTTGTAG-AAAAATCAAAACATCATTGTGCGATGCAGCAAATCATGACCGCGGTTGTAGCTAGA
TGGGACACCGGTGGTAGCAATTTTCAATGCCGGTTGTAGCATGCAGCACAAATCTGCGACACCCATCCTCACTAAATGTC
GCTTGGAGCAGCGT
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
--------------------SSS-SSSSSSSSSSSS---S---S-------SS--S-----S---------SSSSSS---
--------------------------------S-----------------------------------------------
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-------------------------------------------------------------------S-------S----
---S------S----S---S------------SS------------------------------SSS--SSS--------
---------------------S-S-SS------------S-S--------------SS---S--S--SSS------S-S-
-------------S------------------------------------------------------------------
-------------------SSSS-------------------------------------------------------S-
----------S------------------S-------SSS---------S-----S-------S----------------
-----------------------------------------------S----------------------S---------
---S------------------------------------S----SS-------------------------S-------
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---------S-----------------------------------------------------------S----S-----
----S----S----------------------------------------------------------------------
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-------------------------------------------------S---------S--------------------
----------------------------------------------------S---------------------------
-----------------------------S--------------------------------------------------
--------S-------------------------------------------S--S------------------S-----
----S---S------S----------S-----------------------S-----------------------------
-----------------------------S-----S--------------------------------------------
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-----------------------------------S-------------------SSSSSSSSSSSSSSSSSSSSSSSS-
------------------SSSS------------------S-S-------------------------S-----------
-----------------------S------SS-SS----------S--------------------------S-------
--------------------SSSSSSSSSS--------------S----------------------SS-----------
--------------------------------------------------S------------S----------------
-------------S--S-----------S---------------------------------------------------
----S--------------------S---------------------------------S--------------------
---------------------------------------------SS-----------S------S---S----------
-----------------------------------------------------------------S--------------
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>forward_144
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--------------------------------------------CTTCTTCGAGCCGCAAATCG----------------
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>reverse_3839
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------------------------------------------------------------------------------TA
TAGGCGAGCAATAGGCGC--------------------------------------------------------------
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