Multiple sequence alignment - TraesCS5A01G373500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G373500 chr5A 100.000 4815 0 0 1 4815 571464039 571468853 0.000000e+00 8892
1 TraesCS5A01G373500 chr5D 91.270 3276 178 38 1484 4697 452561055 452564284 0.000000e+00 4366
2 TraesCS5A01G373500 chr5D 87.104 1388 78 51 13 1342 452559629 452560973 0.000000e+00 1478
3 TraesCS5A01G373500 chr5D 97.872 94 2 0 2287 2380 403752198 403752291 3.860000e-36 163
4 TraesCS5A01G373500 chr5D 95.745 94 4 0 2287 2380 78435075 78435168 8.350000e-33 152
5 TraesCS5A01G373500 chr5B 88.712 3074 179 81 11 3009 552920533 552923513 0.000000e+00 3600
6 TraesCS5A01G373500 chr5B 90.620 1226 65 18 3158 4363 552923592 552924787 0.000000e+00 1581
7 TraesCS5A01G373500 chr5B 85.238 210 18 2 11 219 552918381 552918578 2.270000e-48 204
8 TraesCS5A01G373500 chr5B 90.850 153 11 1 4356 4505 552925477 552925629 8.170000e-48 202
9 TraesCS5A01G373500 chrUn 98.936 94 1 0 2287 2380 114922848 114922941 8.290000e-38 169
10 TraesCS5A01G373500 chr7D 98.936 94 1 0 2287 2380 567810407 567810314 8.290000e-38 169
11 TraesCS5A01G373500 chr4A 97.872 94 1 1 2287 2380 53816152 53816060 1.390000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G373500 chr5A 571464039 571468853 4814 False 8892.00 8892 100.000 1 4815 1 chr5A.!!$F1 4814
1 TraesCS5A01G373500 chr5D 452559629 452564284 4655 False 2922.00 4366 89.187 13 4697 2 chr5D.!!$F3 4684
2 TraesCS5A01G373500 chr5B 552918381 552925629 7248 False 1396.75 3600 88.855 11 4505 4 chr5B.!!$F1 4494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 2559 0.52847 GATAGATTCCCCTCTCCGCG 59.472 60.0 0.00 0.0 0.00 6.46 F
1350 3629 0.03563 CCTCCTTGCTAGCAGCTTGT 60.036 55.0 18.45 0.0 42.97 3.16 F
3119 5446 0.03213 TCTCATCGCCGCTTATGACC 59.968 55.0 2.12 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1385 3664 1.159285 TGCACAGATCCAAAGAAGCG 58.841 50.0 0.00 0.0 0.0 4.68 R
3153 5480 0.105778 TGCGCCATGACCATAATCGA 59.894 50.0 4.18 0.0 0.0 3.59 R
4145 6529 0.249280 GCACGTTGTTTTTCCCCTGG 60.249 55.0 0.00 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.726517 CCAAGTTGCGCCAGACCG 61.727 66.667 4.18 0.00 0.00 4.79
122 125 2.356125 GGAGCTAGTGGCCATCTTTTCA 60.356 50.000 9.72 0.00 43.05 2.69
129 132 1.012841 GGCCATCTTTTCAGCTCGAG 58.987 55.000 8.45 8.45 0.00 4.04
150 153 4.144727 GGAGGGAGGCCGAGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
151 154 2.520741 GAGGGAGGCCGAGGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
152 155 3.024356 AGGGAGGCCGAGGAGAGA 61.024 66.667 0.00 0.00 0.00 3.10
153 156 2.520741 GGGAGGCCGAGGAGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
154 157 2.598467 GGAGGCCGAGGAGAGAGA 59.402 66.667 0.00 0.00 0.00 3.10
155 158 1.528309 GGAGGCCGAGGAGAGAGAG 60.528 68.421 0.00 0.00 0.00 3.20
202 205 2.650116 CCTCTGTCCGTCCCCACTG 61.650 68.421 0.00 0.00 0.00 3.66
203 206 1.908793 CTCTGTCCGTCCCCACTGT 60.909 63.158 0.00 0.00 0.00 3.55
259 2425 2.961510 CATCCACATCTCCTCTCCTCT 58.038 52.381 0.00 0.00 0.00 3.69
263 2429 2.175499 CCACATCTCCTCTCCTCTCTCT 59.825 54.545 0.00 0.00 0.00 3.10
273 2439 4.222336 CTCTCCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
274 2440 4.219115 TCTCCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
275 2441 4.078922 TCTCCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
276 2442 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
277 2443 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
287 2453 3.963374 TCTCTCTCTCTCTCTCTCTCTGG 59.037 52.174 0.00 0.00 0.00 3.86
296 2462 1.153667 CTCTCTCTGGTGCCGCTTC 60.154 63.158 0.00 0.00 0.00 3.86
321 2494 5.448654 TGCTTGCCATTATTAGATGGTCTT 58.551 37.500 5.85 0.00 46.74 3.01
352 2534 3.729965 CTGAGATGCGAGCGGGCTT 62.730 63.158 0.00 0.00 0.00 4.35
361 2543 1.089481 CGAGCGGGCTTTGCTTGATA 61.089 55.000 7.98 0.00 45.00 2.15
377 2559 0.528470 GATAGATTCCCCTCTCCGCG 59.472 60.000 0.00 0.00 0.00 6.46
484 2677 1.197264 GCTCTGCTCTGCTCAAAGTTG 59.803 52.381 0.00 0.00 0.00 3.16
495 2688 2.615912 GCTCAAAGTTGTCTCTGCTGTT 59.384 45.455 0.00 0.00 0.00 3.16
508 2713 1.273327 CTGCTGTTGGGTGGAAAATCC 59.727 52.381 0.00 0.00 36.96 3.01
563 2768 4.081198 TCTCTTCTTTCCAAGCTGATCTCC 60.081 45.833 0.00 0.00 0.00 3.71
596 2848 1.134907 CACAGCCATGGAAATTGCTCC 60.135 52.381 18.40 0.00 35.88 4.70
603 2855 3.631227 CCATGGAAATTGCTCCTCTTCTC 59.369 47.826 5.56 0.00 36.35 2.87
621 2877 1.002468 CTCTCTGGCCAACACAAAACG 60.002 52.381 7.01 0.00 0.00 3.60
622 2878 0.738389 CTCTGGCCAACACAAAACGT 59.262 50.000 7.01 0.00 0.00 3.99
632 2888 0.655733 CACAAAACGTGTTCGCCTCT 59.344 50.000 0.00 0.00 38.92 3.69
646 2902 3.116091 CCTCTCCTGGCTCTCTCTC 57.884 63.158 0.00 0.00 0.00 3.20
647 2903 0.552848 CCTCTCCTGGCTCTCTCTCT 59.447 60.000 0.00 0.00 0.00 3.10
648 2904 1.477558 CCTCTCCTGGCTCTCTCTCTC 60.478 61.905 0.00 0.00 0.00 3.20
652 2908 1.394266 CCTGGCTCTCTCTCTCTGCC 61.394 65.000 0.00 0.00 43.49 4.85
664 2920 4.344865 TCTGCCCCGGTTTCTGCC 62.345 66.667 0.00 0.00 0.00 4.85
798 3058 2.124403 CCCATCTGTCCTGCCTGC 60.124 66.667 0.00 0.00 0.00 4.85
803 3063 0.540923 ATCTGTCCTGCCTGCTTCTC 59.459 55.000 0.00 0.00 0.00 2.87
807 3067 3.393970 CCTGCCTGCTTCTCGGGA 61.394 66.667 0.00 0.00 44.37 5.14
849 3110 6.143919 CCCACTTGCTTCGTTTCTTTAATTTC 59.856 38.462 0.00 0.00 0.00 2.17
887 3152 3.655556 CGCGATTGCTCGTTTTTGTTTTC 60.656 43.478 0.00 0.00 46.71 2.29
957 3222 1.118356 TTTGGCATGGGTGGTTGGAC 61.118 55.000 0.00 0.00 0.00 4.02
967 3234 1.641577 GTGGTTGGACGCTTAGCTAG 58.358 55.000 1.76 0.00 0.00 3.42
986 3253 2.716217 AGGCTAAAGATCCTGCAACAC 58.284 47.619 0.00 0.00 0.00 3.32
1029 3296 1.830477 GAATCCAGCCTCTGACACTCT 59.170 52.381 0.00 0.00 32.44 3.24
1030 3297 1.949799 ATCCAGCCTCTGACACTCTT 58.050 50.000 0.00 0.00 32.44 2.85
1048 3315 6.152379 CACTCTTGTTTAATTCCTTCCTTGC 58.848 40.000 0.00 0.00 0.00 4.01
1127 3397 3.570212 GTGGTGGTGGTGGAGCCT 61.570 66.667 0.00 0.00 38.35 4.58
1262 3532 3.666122 AGGGCATCCTGGATCCAC 58.334 61.111 11.44 9.23 42.98 4.02
1263 3533 1.005289 AGGGCATCCTGGATCCACT 59.995 57.895 11.44 11.23 42.98 4.00
1344 3623 1.903294 CTCTGCCTCCTTGCTAGCA 59.097 57.895 14.93 14.93 0.00 3.49
1345 3624 4.536316 CTGCCTCCTTGCTAGCAG 57.464 61.111 18.45 11.87 45.92 4.24
1346 3625 1.818785 CTGCCTCCTTGCTAGCAGC 60.819 63.158 18.45 17.41 45.44 5.25
1348 3627 1.077858 GCCTCCTTGCTAGCAGCTT 60.078 57.895 18.45 0.00 42.97 3.74
1350 3629 0.035630 CCTCCTTGCTAGCAGCTTGT 60.036 55.000 18.45 0.00 42.97 3.16
1351 3630 1.085091 CTCCTTGCTAGCAGCTTGTG 58.915 55.000 18.45 5.22 42.97 3.33
1352 3631 0.321919 TCCTTGCTAGCAGCTTGTGG 60.322 55.000 18.45 13.54 42.97 4.17
1353 3632 0.321919 CCTTGCTAGCAGCTTGTGGA 60.322 55.000 18.45 0.00 42.97 4.02
1354 3633 1.527034 CTTGCTAGCAGCTTGTGGAA 58.473 50.000 18.45 0.00 42.97 3.53
1355 3634 2.089980 CTTGCTAGCAGCTTGTGGAAT 58.910 47.619 18.45 0.00 42.97 3.01
1356 3635 2.205022 TGCTAGCAGCTTGTGGAATT 57.795 45.000 14.93 0.00 42.97 2.17
1367 3646 6.094881 GCAGCTTGTGGAATTAATGGTTACTA 59.905 38.462 0.00 0.00 0.00 1.82
1385 3664 6.476706 GGTTACTATTGCAAGAATTTGGCATC 59.523 38.462 4.94 0.00 34.79 3.91
1441 3724 5.920273 GGTGAACACAAGGTTGAATTACATG 59.080 40.000 7.25 0.00 40.63 3.21
1454 3737 3.795688 ATTACATGTCCCATGGCCTAG 57.204 47.619 6.09 0.00 0.00 3.02
1538 3821 9.276590 CCAAGATATGCATGTGAGTTTAGAATA 57.723 33.333 10.16 0.00 0.00 1.75
1546 3829 9.223099 TGCATGTGAGTTTAGAATATGATATGG 57.777 33.333 0.00 0.00 0.00 2.74
1552 3835 9.494271 TGAGTTTAGAATATGATATGGCACTTC 57.506 33.333 0.00 0.00 0.00 3.01
1628 3915 5.981088 ATGATGCAACAACTTGGTATGAA 57.019 34.783 0.00 0.00 0.00 2.57
1629 3916 5.119931 TGATGCAACAACTTGGTATGAAC 57.880 39.130 0.00 0.00 0.00 3.18
1630 3917 4.826733 TGATGCAACAACTTGGTATGAACT 59.173 37.500 0.00 0.00 0.00 3.01
1676 3966 3.304257 GGTGCTGATGAACAAGACTTGTG 60.304 47.826 21.24 8.91 44.59 3.33
1844 4138 7.444487 GGTCTCCAAGTCTGTTATTTTTGTACT 59.556 37.037 0.00 0.00 0.00 2.73
1845 4139 8.283291 GTCTCCAAGTCTGTTATTTTTGTACTG 58.717 37.037 0.00 0.00 0.00 2.74
1864 4158 9.640963 TTGTACTGACTAAGATAAGCTTTTCTC 57.359 33.333 18.16 8.07 38.05 2.87
1872 4166 9.598517 ACTAAGATAAGCTTTTCTCTGATGAAG 57.401 33.333 18.16 10.25 38.05 3.02
1891 4185 5.428253 TGAAGATGGTATTAGTTCACAGCC 58.572 41.667 0.00 0.00 0.00 4.85
1939 4233 3.202906 GTTCGCACAATCATTAGCCCTA 58.797 45.455 0.00 0.00 0.00 3.53
1940 4234 3.769739 TCGCACAATCATTAGCCCTAT 57.230 42.857 0.00 0.00 0.00 2.57
1941 4235 4.085357 TCGCACAATCATTAGCCCTATT 57.915 40.909 0.00 0.00 0.00 1.73
1942 4236 4.460263 TCGCACAATCATTAGCCCTATTT 58.540 39.130 0.00 0.00 0.00 1.40
1993 4306 5.343307 TCTCTATGTGCTCAGTTATGCAA 57.657 39.130 0.00 0.00 41.10 4.08
2015 4328 2.100631 GCCGGGTGTGAACTCATCG 61.101 63.158 2.18 0.00 0.00 3.84
2063 4383 7.615365 TCATTATGAGTCAATAAAAGTGCCCTT 59.385 33.333 0.00 0.00 0.00 3.95
2069 4389 7.450014 TGAGTCAATAAAAGTGCCCTTTATCAA 59.550 33.333 0.00 0.00 40.01 2.57
2070 4390 8.189119 AGTCAATAAAAGTGCCCTTTATCAAA 57.811 30.769 0.00 0.00 40.01 2.69
2082 4402 7.492344 GTGCCCTTTATCAAAAATAGAATGTGG 59.508 37.037 0.00 0.00 0.00 4.17
2235 4556 8.093307 TCTTGATGGAATCTGATACAGCTATTC 58.907 37.037 10.48 0.00 45.81 1.75
2241 4562 7.147672 TGGAATCTGATACAGCTATTCACTTCA 60.148 37.037 12.05 2.96 30.92 3.02
2469 4790 1.809547 GAGGCAACAAAGGAGAGAAGC 59.190 52.381 0.00 0.00 41.41 3.86
2472 4793 1.819305 GCAACAAAGGAGAGAAGCCCA 60.819 52.381 0.00 0.00 0.00 5.36
2578 4899 6.288294 TGGTATGCTTTTCGATTACTGCTAT 58.712 36.000 0.00 0.00 0.00 2.97
2579 4900 6.765989 TGGTATGCTTTTCGATTACTGCTATT 59.234 34.615 0.00 0.00 0.00 1.73
2634 4957 7.329582 CAACTTTACAGCTGAAAATTGTTTCG 58.670 34.615 23.35 5.03 45.26 3.46
2703 5026 3.055094 TGTCTTCTGGTTATCCTTCAGCC 60.055 47.826 0.00 0.00 34.23 4.85
2706 5029 1.757118 TCTGGTTATCCTTCAGCCGAG 59.243 52.381 0.00 0.00 34.23 4.63
2745 5068 3.247006 ACCACTTACGCGATGAAATCT 57.753 42.857 15.93 0.00 42.58 2.40
2765 5088 2.047002 ACGGTAAGCTTTGGTGTGTT 57.953 45.000 3.20 0.00 0.00 3.32
2784 5107 4.744631 GTGTTTTGTGTGCTCTATTTTGGG 59.255 41.667 0.00 0.00 0.00 4.12
2785 5108 4.646945 TGTTTTGTGTGCTCTATTTTGGGA 59.353 37.500 0.00 0.00 0.00 4.37
2821 5144 6.379386 TCTGTGATATTATTCTCTAACGCCG 58.621 40.000 0.00 0.00 0.00 6.46
2822 5145 4.921515 TGTGATATTATTCTCTAACGCCGC 59.078 41.667 0.00 0.00 0.00 6.53
2824 5147 4.219944 TGATATTATTCTCTAACGCCGCCT 59.780 41.667 0.00 0.00 0.00 5.52
2825 5148 2.973694 TTATTCTCTAACGCCGCCTT 57.026 45.000 0.00 0.00 0.00 4.35
2826 5149 2.503920 TATTCTCTAACGCCGCCTTC 57.496 50.000 0.00 0.00 0.00 3.46
2827 5150 0.824759 ATTCTCTAACGCCGCCTTCT 59.175 50.000 0.00 0.00 0.00 2.85
2828 5151 0.606604 TTCTCTAACGCCGCCTTCTT 59.393 50.000 0.00 0.00 0.00 2.52
2909 5232 0.650476 CGCCGATTTACGTGAATGCG 60.650 55.000 18.56 18.56 39.91 4.73
3011 5334 0.250727 TAAGCCTGCACTTCCACCAC 60.251 55.000 0.00 0.00 0.00 4.16
3012 5335 2.983725 AAGCCTGCACTTCCACCACC 62.984 60.000 0.00 0.00 0.00 4.61
3013 5336 2.515398 CCTGCACTTCCACCACCA 59.485 61.111 0.00 0.00 0.00 4.17
3021 5344 1.202927 ACTTCCACCACCAAGTCCATG 60.203 52.381 0.00 0.00 0.00 3.66
3035 5358 6.118170 CCAAGTCCATGTCATTTACAGAGAT 58.882 40.000 0.00 0.00 42.70 2.75
3036 5359 6.259608 CCAAGTCCATGTCATTTACAGAGATC 59.740 42.308 0.00 0.00 42.70 2.75
3118 5445 1.852942 TTCTCATCGCCGCTTATGAC 58.147 50.000 2.12 0.00 0.00 3.06
3119 5446 0.032130 TCTCATCGCCGCTTATGACC 59.968 55.000 2.12 0.00 0.00 4.02
3120 5447 0.249447 CTCATCGCCGCTTATGACCA 60.249 55.000 2.12 0.00 0.00 4.02
3121 5448 0.392706 TCATCGCCGCTTATGACCAT 59.607 50.000 2.12 0.00 0.00 3.55
3122 5449 0.514255 CATCGCCGCTTATGACCATG 59.486 55.000 0.00 0.00 0.00 3.66
3123 5450 0.106708 ATCGCCGCTTATGACCATGT 59.893 50.000 0.00 0.00 0.00 3.21
3124 5451 0.107897 TCGCCGCTTATGACCATGTT 60.108 50.000 0.00 0.00 0.00 2.71
3125 5452 0.732571 CGCCGCTTATGACCATGTTT 59.267 50.000 0.00 0.00 0.00 2.83
3126 5453 1.132262 CGCCGCTTATGACCATGTTTT 59.868 47.619 0.00 0.00 0.00 2.43
3127 5454 2.529151 GCCGCTTATGACCATGTTTTG 58.471 47.619 0.00 0.00 0.00 2.44
3128 5455 2.163412 GCCGCTTATGACCATGTTTTGA 59.837 45.455 0.00 0.00 0.00 2.69
3129 5456 3.366883 GCCGCTTATGACCATGTTTTGAA 60.367 43.478 0.00 0.00 0.00 2.69
3130 5457 4.804108 CCGCTTATGACCATGTTTTGAAA 58.196 39.130 0.00 0.00 0.00 2.69
3131 5458 4.621034 CCGCTTATGACCATGTTTTGAAAC 59.379 41.667 0.00 0.00 39.33 2.78
3132 5459 4.320690 CGCTTATGACCATGTTTTGAAACG 59.679 41.667 2.53 0.00 41.74 3.60
3133 5460 5.457140 GCTTATGACCATGTTTTGAAACGA 58.543 37.500 0.00 0.00 41.74 3.85
3134 5461 5.918011 GCTTATGACCATGTTTTGAAACGAA 59.082 36.000 0.00 0.00 41.74 3.85
3135 5462 6.088085 GCTTATGACCATGTTTTGAAACGAAG 59.912 38.462 0.00 0.00 41.74 3.79
3136 5463 4.300189 TGACCATGTTTTGAAACGAAGG 57.700 40.909 0.00 6.28 41.74 3.46
3137 5464 3.049912 GACCATGTTTTGAAACGAAGGC 58.950 45.455 0.00 0.00 41.74 4.35
3138 5465 2.428890 ACCATGTTTTGAAACGAAGGCA 59.571 40.909 0.00 0.00 41.74 4.75
3139 5466 3.118956 ACCATGTTTTGAAACGAAGGCAA 60.119 39.130 0.00 0.00 41.74 4.52
3140 5467 3.868077 CCATGTTTTGAAACGAAGGCAAA 59.132 39.130 0.00 0.00 41.74 3.68
3141 5468 4.331168 CCATGTTTTGAAACGAAGGCAAAA 59.669 37.500 0.00 0.00 41.74 2.44
3142 5469 5.007528 CCATGTTTTGAAACGAAGGCAAAAT 59.992 36.000 0.00 0.00 41.69 1.82
3143 5470 6.201806 CCATGTTTTGAAACGAAGGCAAAATA 59.798 34.615 0.00 0.00 41.69 1.40
3144 5471 7.095271 CCATGTTTTGAAACGAAGGCAAAATAT 60.095 33.333 0.00 0.00 41.09 1.28
3145 5472 7.778470 TGTTTTGAAACGAAGGCAAAATATT 57.222 28.000 0.00 0.00 41.69 1.28
3146 5473 8.202745 TGTTTTGAAACGAAGGCAAAATATTT 57.797 26.923 0.00 0.00 41.69 1.40
3147 5474 9.314321 TGTTTTGAAACGAAGGCAAAATATTTA 57.686 25.926 0.01 0.00 41.69 1.40
3148 5475 9.575702 GTTTTGAAACGAAGGCAAAATATTTAC 57.424 29.630 0.01 0.00 41.69 2.01
3149 5476 7.876896 TTGAAACGAAGGCAAAATATTTACC 57.123 32.000 0.01 6.59 0.00 2.85
3150 5477 7.222000 TGAAACGAAGGCAAAATATTTACCT 57.778 32.000 14.20 14.20 0.00 3.08
3151 5478 7.309920 TGAAACGAAGGCAAAATATTTACCTC 58.690 34.615 18.34 12.66 0.00 3.85
3152 5479 6.827586 AACGAAGGCAAAATATTTACCTCA 57.172 33.333 18.34 0.00 0.00 3.86
3153 5480 7.404671 AACGAAGGCAAAATATTTACCTCAT 57.595 32.000 18.34 8.07 0.00 2.90
3154 5481 7.027778 ACGAAGGCAAAATATTTACCTCATC 57.972 36.000 18.34 13.66 0.00 2.92
3155 5482 6.136071 CGAAGGCAAAATATTTACCTCATCG 58.864 40.000 18.34 18.99 0.00 3.84
3156 5483 6.018262 CGAAGGCAAAATATTTACCTCATCGA 60.018 38.462 23.90 0.00 33.35 3.59
3157 5484 7.307989 CGAAGGCAAAATATTTACCTCATCGAT 60.308 37.037 23.90 11.23 33.35 3.59
3158 5485 7.823745 AGGCAAAATATTTACCTCATCGATT 57.176 32.000 14.20 0.00 0.00 3.34
3159 5486 8.918202 AGGCAAAATATTTACCTCATCGATTA 57.082 30.769 14.20 0.00 0.00 1.75
3160 5487 9.520515 AGGCAAAATATTTACCTCATCGATTAT 57.479 29.630 14.20 0.00 0.00 1.28
3161 5488 9.559958 GGCAAAATATTTACCTCATCGATTATG 57.440 33.333 0.01 0.00 36.88 1.90
3162 5489 9.559958 GCAAAATATTTACCTCATCGATTATGG 57.440 33.333 0.01 0.50 36.15 2.74
3248 5620 3.056328 GGGCGCTTCCTGAACACC 61.056 66.667 7.64 0.00 34.39 4.16
3261 5633 1.064825 GAACACCAAGAAGGAGGGGA 58.935 55.000 0.00 0.00 41.22 4.81
3276 5648 2.409870 GGGAATGGCAAGGACGCTG 61.410 63.158 0.00 0.00 0.00 5.18
3277 5649 2.409870 GGAATGGCAAGGACGCTGG 61.410 63.158 0.00 0.00 0.00 4.85
3278 5650 1.377202 GAATGGCAAGGACGCTGGA 60.377 57.895 0.00 0.00 0.00 3.86
3299 5671 1.970352 GAGGAGGCAAGAGGGCAGAG 61.970 65.000 0.00 0.00 46.44 3.35
3348 5720 3.209812 CGAGCTCCGTCATCCCGA 61.210 66.667 8.47 0.00 0.00 5.14
3349 5721 2.725008 GAGCTCCGTCATCCCGAG 59.275 66.667 0.87 0.00 0.00 4.63
3350 5722 3.492311 GAGCTCCGTCATCCCGAGC 62.492 68.421 0.87 0.02 39.01 5.03
3351 5723 3.838271 GCTCCGTCATCCCGAGCA 61.838 66.667 3.51 0.00 38.62 4.26
3352 5724 2.892640 CTCCGTCATCCCGAGCAA 59.107 61.111 0.00 0.00 0.00 3.91
3353 5725 1.519455 CTCCGTCATCCCGAGCAAC 60.519 63.158 0.00 0.00 0.00 4.17
3354 5726 2.511600 CCGTCATCCCGAGCAACC 60.512 66.667 0.00 0.00 0.00 3.77
3355 5727 2.511600 CGTCATCCCGAGCAACCC 60.512 66.667 0.00 0.00 0.00 4.11
3356 5728 2.511600 GTCATCCCGAGCAACCCG 60.512 66.667 0.00 0.00 0.00 5.28
3458 5830 3.518998 ATCGAGCACCTCCGGACG 61.519 66.667 0.00 0.75 0.00 4.79
3685 6058 0.960364 CATTGGGGTGTCCTTCCACG 60.960 60.000 0.00 0.00 36.16 4.94
3691 6064 1.374252 GTGTCCTTCCACGTCGCAT 60.374 57.895 0.00 0.00 0.00 4.73
3706 6079 1.757118 TCGCATTACCTCTTCCCTGAG 59.243 52.381 0.00 0.00 0.00 3.35
3723 6096 0.670854 GAGAACTCCGGTGCTGGTTC 60.671 60.000 0.00 9.66 38.51 3.62
3809 6182 4.639310 AGTGTACTACGGGTATGAACTCTG 59.361 45.833 0.00 0.00 32.56 3.35
3815 6188 2.494870 ACGGGTATGAACTCTGTGGTAC 59.505 50.000 0.00 0.00 0.00 3.34
3816 6189 2.758979 CGGGTATGAACTCTGTGGTACT 59.241 50.000 0.00 0.00 0.00 2.73
3818 6191 4.583489 CGGGTATGAACTCTGTGGTACTAT 59.417 45.833 0.00 0.00 0.00 2.12
3819 6192 5.278364 CGGGTATGAACTCTGTGGTACTATC 60.278 48.000 0.00 0.00 0.00 2.08
3820 6193 5.597182 GGGTATGAACTCTGTGGTACTATCA 59.403 44.000 0.00 0.00 0.00 2.15
3832 6209 5.593095 TGTGGTACTATCAGGTATCTGTGTC 59.407 44.000 2.20 0.00 41.59 3.67
3833 6210 5.593095 GTGGTACTATCAGGTATCTGTGTCA 59.407 44.000 2.20 0.00 41.59 3.58
3834 6211 5.828328 TGGTACTATCAGGTATCTGTGTCAG 59.172 44.000 2.20 0.00 41.59 3.51
3835 6212 6.062749 GGTACTATCAGGTATCTGTGTCAGA 58.937 44.000 2.20 1.92 44.99 3.27
3836 6213 6.546403 GGTACTATCAGGTATCTGTGTCAGAA 59.454 42.308 2.20 0.00 44.04 3.02
3837 6214 6.458232 ACTATCAGGTATCTGTGTCAGAAC 57.542 41.667 2.20 4.24 44.04 3.01
3838 6215 6.191315 ACTATCAGGTATCTGTGTCAGAACT 58.809 40.000 2.20 1.01 44.04 3.01
3870 6247 2.930950 TCAAACTTCAGGGTCTTGTGG 58.069 47.619 0.00 0.00 0.00 4.17
3899 6277 1.692411 AGGGTCTGAAACTTTGTGCC 58.308 50.000 0.00 0.00 0.00 5.01
3916 6294 2.886382 CCCTTGGCAATGTACTGGG 58.114 57.895 0.00 2.58 0.00 4.45
3931 6309 3.965470 ACTGGGGTAAGTTGGAGTTTT 57.035 42.857 0.00 0.00 0.00 2.43
3933 6311 3.958147 ACTGGGGTAAGTTGGAGTTTTTG 59.042 43.478 0.00 0.00 0.00 2.44
3935 6313 4.354662 TGGGGTAAGTTGGAGTTTTTGTT 58.645 39.130 0.00 0.00 0.00 2.83
3936 6314 4.778427 TGGGGTAAGTTGGAGTTTTTGTTT 59.222 37.500 0.00 0.00 0.00 2.83
3937 6315 5.113383 GGGGTAAGTTGGAGTTTTTGTTTG 58.887 41.667 0.00 0.00 0.00 2.93
3938 6316 5.337733 GGGGTAAGTTGGAGTTTTTGTTTGT 60.338 40.000 0.00 0.00 0.00 2.83
4010 6393 5.909621 ATGATTTGTAAGCTTGTCTGCAT 57.090 34.783 9.86 3.17 34.99 3.96
4039 6422 8.582433 AATTAGAAATGTTACCGGTTTGTTTG 57.418 30.769 15.04 0.00 0.00 2.93
4045 6428 9.843334 GAAATGTTACCGGTTTGTTTGATATTA 57.157 29.630 15.04 0.00 0.00 0.98
4046 6429 9.628746 AAATGTTACCGGTTTGTTTGATATTAC 57.371 29.630 15.04 0.00 0.00 1.89
4077 6461 7.712264 TTTTTACAGCTTGATTTGACATTGG 57.288 32.000 0.00 0.00 0.00 3.16
4078 6462 3.947910 ACAGCTTGATTTGACATTGGG 57.052 42.857 0.00 0.00 0.00 4.12
4098 6482 2.289444 GGATTGTTCCTCGGTTCACTGA 60.289 50.000 0.00 0.00 39.14 3.41
4107 6491 5.369833 TCCTCGGTTCACTGACAAATAAAA 58.630 37.500 0.00 0.00 0.00 1.52
4119 6503 7.277539 CACTGACAAATAAAAACACAACACCAT 59.722 33.333 0.00 0.00 0.00 3.55
4123 6507 9.484326 GACAAATAAAAACACAACACCATTTTC 57.516 29.630 0.00 0.00 0.00 2.29
4192 6577 6.238049 GGCTGCGATCTTCATATATCATTCAC 60.238 42.308 0.00 0.00 0.00 3.18
4268 6687 9.627123 CAGATGATACAATTTTAACCCTTCCTA 57.373 33.333 0.00 0.00 0.00 2.94
4271 6690 6.824704 TGATACAATTTTAACCCTTCCTACCG 59.175 38.462 0.00 0.00 0.00 4.02
4365 7481 6.713762 TTTCCACAAATCCATCATGATACC 57.286 37.500 8.15 0.00 0.00 2.73
4376 7492 5.073417 TCCATCATGATACCCATCAATGTGA 59.927 40.000 8.15 0.00 44.27 3.58
4388 7504 5.336213 CCCATCAATGTGAAGGAGTTCTTTG 60.336 44.000 1.14 0.00 37.42 2.77
4405 7524 5.957842 TCTTTGCACAACTTAATACCCTG 57.042 39.130 0.00 0.00 0.00 4.45
4462 7581 2.301738 GCTCCCCCTAAGTGCCAGT 61.302 63.158 0.00 0.00 0.00 4.00
4465 7584 0.326238 TCCCCCTAAGTGCCAGTAGG 60.326 60.000 0.00 0.00 37.26 3.18
4496 7615 5.512942 TGAAGATTTCACCCCAATCTGTA 57.487 39.130 0.00 0.00 39.61 2.74
4514 7633 8.405531 CAATCTGTAAACAAACTGAAAGAAGGA 58.594 33.333 0.00 0.00 37.43 3.36
4518 7637 4.590850 AACAAACTGAAAGAAGGATGGC 57.409 40.909 0.00 0.00 37.43 4.40
4543 7662 4.261489 GGATGCTCAACCATGCTTTCATAG 60.261 45.833 0.00 0.00 31.69 2.23
4544 7663 3.018856 TGCTCAACCATGCTTTCATAGG 58.981 45.455 0.00 0.00 0.00 2.57
4636 7755 2.637382 TCAGTTACCAGCCAGATCAACA 59.363 45.455 0.00 0.00 0.00 3.33
4644 7763 4.460382 ACCAGCCAGATCAACAAGTATTTG 59.540 41.667 0.00 0.00 40.24 2.32
4676 7795 5.243954 TCCTATGGAGAAAGTATGGTCATCG 59.756 44.000 0.00 0.00 0.00 3.84
4697 7816 2.689983 GGATTGTTGGACATGCCCTTAG 59.310 50.000 0.00 0.00 34.97 2.18
4698 7817 2.969821 TTGTTGGACATGCCCTTAGT 57.030 45.000 0.00 0.00 34.97 2.24
4699 7818 2.198827 TGTTGGACATGCCCTTAGTG 57.801 50.000 0.00 0.00 34.97 2.74
4700 7819 0.811281 GTTGGACATGCCCTTAGTGC 59.189 55.000 0.00 0.00 34.97 4.40
4701 7820 0.323360 TTGGACATGCCCTTAGTGCC 60.323 55.000 0.00 0.00 34.97 5.01
4702 7821 1.207488 TGGACATGCCCTTAGTGCCT 61.207 55.000 0.00 0.00 34.97 4.75
4703 7822 0.837272 GGACATGCCCTTAGTGCCTA 59.163 55.000 0.00 0.00 0.00 3.93
4704 7823 1.202698 GGACATGCCCTTAGTGCCTAG 60.203 57.143 0.00 0.00 0.00 3.02
4705 7824 0.839946 ACATGCCCTTAGTGCCTAGG 59.160 55.000 3.67 3.67 0.00 3.02
4706 7825 1.131638 CATGCCCTTAGTGCCTAGGA 58.868 55.000 14.75 0.00 0.00 2.94
4707 7826 1.701847 CATGCCCTTAGTGCCTAGGAT 59.298 52.381 14.75 0.00 0.00 3.24
4708 7827 2.787339 TGCCCTTAGTGCCTAGGATA 57.213 50.000 14.75 0.00 0.00 2.59
4709 7828 3.054779 TGCCCTTAGTGCCTAGGATAA 57.945 47.619 14.75 7.13 0.00 1.75
4710 7829 3.389866 TGCCCTTAGTGCCTAGGATAAA 58.610 45.455 14.75 0.00 0.00 1.40
4711 7830 3.391296 TGCCCTTAGTGCCTAGGATAAAG 59.609 47.826 14.75 9.53 0.00 1.85
4712 7831 3.391626 GCCCTTAGTGCCTAGGATAAAGT 59.608 47.826 14.75 0.00 0.00 2.66
4713 7832 4.591924 GCCCTTAGTGCCTAGGATAAAGTA 59.408 45.833 14.75 0.00 0.00 2.24
4714 7833 5.248705 GCCCTTAGTGCCTAGGATAAAGTAT 59.751 44.000 14.75 0.00 0.00 2.12
4715 7834 6.702329 CCCTTAGTGCCTAGGATAAAGTATG 58.298 44.000 14.75 4.39 0.00 2.39
4716 7835 6.166982 CCTTAGTGCCTAGGATAAAGTATGC 58.833 44.000 14.75 0.00 0.00 3.14
4717 7836 6.239600 CCTTAGTGCCTAGGATAAAGTATGCA 60.240 42.308 14.75 0.00 0.00 3.96
4718 7837 5.630415 AGTGCCTAGGATAAAGTATGCAA 57.370 39.130 14.75 0.00 0.00 4.08
4719 7838 5.368989 AGTGCCTAGGATAAAGTATGCAAC 58.631 41.667 14.75 0.00 0.00 4.17
4720 7839 4.515567 GTGCCTAGGATAAAGTATGCAACC 59.484 45.833 14.75 0.00 0.00 3.77
4721 7840 4.072839 GCCTAGGATAAAGTATGCAACCC 58.927 47.826 14.75 0.00 0.00 4.11
4722 7841 4.445735 GCCTAGGATAAAGTATGCAACCCA 60.446 45.833 14.75 0.00 0.00 4.51
4723 7842 5.690865 CCTAGGATAAAGTATGCAACCCAA 58.309 41.667 1.05 0.00 0.00 4.12
4724 7843 6.126409 CCTAGGATAAAGTATGCAACCCAAA 58.874 40.000 1.05 0.00 0.00 3.28
4725 7844 6.605594 CCTAGGATAAAGTATGCAACCCAAAA 59.394 38.462 1.05 0.00 0.00 2.44
4726 7845 6.530019 AGGATAAAGTATGCAACCCAAAAG 57.470 37.500 0.00 0.00 0.00 2.27
4727 7846 5.105351 AGGATAAAGTATGCAACCCAAAAGC 60.105 40.000 0.00 0.00 0.00 3.51
4728 7847 5.105351 GGATAAAGTATGCAACCCAAAAGCT 60.105 40.000 0.00 0.00 0.00 3.74
4729 7848 3.942130 AAGTATGCAACCCAAAAGCTC 57.058 42.857 0.00 0.00 0.00 4.09
4730 7849 2.875296 AGTATGCAACCCAAAAGCTCA 58.125 42.857 0.00 0.00 0.00 4.26
4731 7850 3.230134 AGTATGCAACCCAAAAGCTCAA 58.770 40.909 0.00 0.00 0.00 3.02
4732 7851 2.825861 ATGCAACCCAAAAGCTCAAG 57.174 45.000 0.00 0.00 0.00 3.02
4733 7852 0.752054 TGCAACCCAAAAGCTCAAGG 59.248 50.000 0.00 0.00 0.00 3.61
4734 7853 1.039856 GCAACCCAAAAGCTCAAGGA 58.960 50.000 0.00 0.00 0.00 3.36
4735 7854 1.000171 GCAACCCAAAAGCTCAAGGAG 60.000 52.381 0.00 0.00 0.00 3.69
4736 7855 1.615392 CAACCCAAAAGCTCAAGGAGG 59.385 52.381 0.00 0.00 0.00 4.30
4737 7856 0.853530 ACCCAAAAGCTCAAGGAGGT 59.146 50.000 0.00 0.00 42.52 3.85
4738 7857 1.202940 ACCCAAAAGCTCAAGGAGGTC 60.203 52.381 0.00 0.00 39.62 3.85
4739 7858 1.074566 CCCAAAAGCTCAAGGAGGTCT 59.925 52.381 0.00 0.00 39.62 3.85
4740 7859 2.305927 CCCAAAAGCTCAAGGAGGTCTA 59.694 50.000 0.00 0.00 39.62 2.59
4741 7860 3.604582 CCAAAAGCTCAAGGAGGTCTAG 58.395 50.000 0.00 0.00 39.62 2.43
4742 7861 3.604582 CAAAAGCTCAAGGAGGTCTAGG 58.395 50.000 0.00 0.00 39.62 3.02
4743 7862 2.930109 AAGCTCAAGGAGGTCTAGGA 57.070 50.000 0.00 0.00 39.62 2.94
4744 7863 2.930109 AGCTCAAGGAGGTCTAGGAA 57.070 50.000 0.00 0.00 35.30 3.36
4745 7864 3.413105 AGCTCAAGGAGGTCTAGGAAT 57.587 47.619 0.00 0.00 35.30 3.01
4746 7865 4.544564 AGCTCAAGGAGGTCTAGGAATA 57.455 45.455 0.00 0.00 35.30 1.75
4747 7866 5.086598 AGCTCAAGGAGGTCTAGGAATAT 57.913 43.478 0.00 0.00 35.30 1.28
4748 7867 5.472347 AGCTCAAGGAGGTCTAGGAATATT 58.528 41.667 0.00 0.00 35.30 1.28
4749 7868 6.625267 AGCTCAAGGAGGTCTAGGAATATTA 58.375 40.000 0.00 0.00 35.30 0.98
4750 7869 6.723977 AGCTCAAGGAGGTCTAGGAATATTAG 59.276 42.308 0.00 0.00 35.30 1.73
4751 7870 6.722129 GCTCAAGGAGGTCTAGGAATATTAGA 59.278 42.308 0.00 0.00 0.00 2.10
4752 7871 7.398904 GCTCAAGGAGGTCTAGGAATATTAGAT 59.601 40.741 0.00 0.00 30.45 1.98
4753 7872 8.657387 TCAAGGAGGTCTAGGAATATTAGATG 57.343 38.462 0.00 0.00 30.45 2.90
4754 7873 8.235230 TCAAGGAGGTCTAGGAATATTAGATGT 58.765 37.037 0.00 0.00 30.45 3.06
4755 7874 8.310382 CAAGGAGGTCTAGGAATATTAGATGTG 58.690 40.741 0.00 0.00 30.45 3.21
4756 7875 6.957020 AGGAGGTCTAGGAATATTAGATGTGG 59.043 42.308 0.00 0.00 30.45 4.17
4757 7876 6.351456 GGAGGTCTAGGAATATTAGATGTGGC 60.351 46.154 0.00 0.00 30.45 5.01
4758 7877 6.084738 AGGTCTAGGAATATTAGATGTGGCA 58.915 40.000 0.00 0.00 30.45 4.92
4759 7878 6.014156 AGGTCTAGGAATATTAGATGTGGCAC 60.014 42.308 11.55 11.55 30.45 5.01
4760 7879 6.014156 GGTCTAGGAATATTAGATGTGGCACT 60.014 42.308 19.83 4.13 30.45 4.40
4761 7880 7.178628 GGTCTAGGAATATTAGATGTGGCACTA 59.821 40.741 19.83 5.69 30.45 2.74
4762 7881 8.030106 GTCTAGGAATATTAGATGTGGCACTAC 58.970 40.741 19.83 12.34 30.45 2.73
4763 7882 6.747414 AGGAATATTAGATGTGGCACTACA 57.253 37.500 19.83 0.00 34.63 2.74
4764 7883 7.321717 AGGAATATTAGATGTGGCACTACAT 57.678 36.000 19.83 3.74 43.61 2.29
4765 7884 8.435931 AGGAATATTAGATGTGGCACTACATA 57.564 34.615 19.83 8.32 41.15 2.29
4766 7885 8.880244 AGGAATATTAGATGTGGCACTACATAA 58.120 33.333 19.83 12.33 41.15 1.90
4767 7886 8.936864 GGAATATTAGATGTGGCACTACATAAC 58.063 37.037 19.83 0.00 41.15 1.89
4768 7887 9.489084 GAATATTAGATGTGGCACTACATAACA 57.511 33.333 19.83 2.90 41.15 2.41
4769 7888 9.845740 AATATTAGATGTGGCACTACATAACAA 57.154 29.630 19.83 2.80 41.15 2.83
4770 7889 7.792374 ATTAGATGTGGCACTACATAACAAG 57.208 36.000 19.83 0.00 41.15 3.16
4771 7890 4.517285 AGATGTGGCACTACATAACAAGG 58.483 43.478 19.83 0.00 41.15 3.61
4772 7891 2.432444 TGTGGCACTACATAACAAGGC 58.568 47.619 19.83 0.00 0.00 4.35
4773 7892 2.039746 TGTGGCACTACATAACAAGGCT 59.960 45.455 19.83 0.00 0.00 4.58
4774 7893 3.081804 GTGGCACTACATAACAAGGCTT 58.918 45.455 11.13 0.00 0.00 4.35
4775 7894 3.506067 GTGGCACTACATAACAAGGCTTT 59.494 43.478 11.13 0.00 0.00 3.51
4776 7895 3.505680 TGGCACTACATAACAAGGCTTTG 59.494 43.478 7.07 7.07 40.24 2.77
4777 7896 3.756434 GGCACTACATAACAAGGCTTTGA 59.244 43.478 16.36 0.00 37.73 2.69
4778 7897 4.399303 GGCACTACATAACAAGGCTTTGAT 59.601 41.667 16.36 6.02 37.73 2.57
4779 7898 5.335127 GCACTACATAACAAGGCTTTGATG 58.665 41.667 16.36 11.61 37.73 3.07
4780 7899 5.123820 GCACTACATAACAAGGCTTTGATGA 59.876 40.000 16.36 0.00 37.73 2.92
4781 7900 6.183360 GCACTACATAACAAGGCTTTGATGAT 60.183 38.462 16.36 2.45 37.73 2.45
4782 7901 7.191551 CACTACATAACAAGGCTTTGATGATG 58.808 38.462 16.36 15.64 37.73 3.07
4783 7902 7.066163 CACTACATAACAAGGCTTTGATGATGA 59.934 37.037 16.36 5.30 37.73 2.92
4784 7903 6.839124 ACATAACAAGGCTTTGATGATGAA 57.161 33.333 16.36 0.00 37.73 2.57
4785 7904 6.860080 ACATAACAAGGCTTTGATGATGAAG 58.140 36.000 16.36 0.00 37.73 3.02
4786 7905 6.660521 ACATAACAAGGCTTTGATGATGAAGA 59.339 34.615 16.36 0.00 37.73 2.87
4787 7906 7.177216 ACATAACAAGGCTTTGATGATGAAGAA 59.823 33.333 16.36 0.00 37.73 2.52
4788 7907 6.600882 AACAAGGCTTTGATGATGAAGAAT 57.399 33.333 16.36 0.00 37.73 2.40
4789 7908 7.707624 AACAAGGCTTTGATGATGAAGAATA 57.292 32.000 16.36 0.00 37.73 1.75
4790 7909 7.893124 ACAAGGCTTTGATGATGAAGAATAT 57.107 32.000 16.36 0.00 37.73 1.28
4791 7910 8.302515 ACAAGGCTTTGATGATGAAGAATATT 57.697 30.769 16.36 0.00 37.73 1.28
4792 7911 8.411683 ACAAGGCTTTGATGATGAAGAATATTC 58.588 33.333 16.36 7.41 37.73 1.75
4793 7912 8.410912 CAAGGCTTTGATGATGAAGAATATTCA 58.589 33.333 17.56 0.00 36.36 2.57
4794 7913 8.529424 AGGCTTTGATGATGAAGAATATTCAA 57.471 30.769 17.56 3.36 31.55 2.69
4795 7914 8.974238 AGGCTTTGATGATGAAGAATATTCAAA 58.026 29.630 17.56 5.87 32.47 2.69
4796 7915 9.590451 GGCTTTGATGATGAAGAATATTCAAAA 57.410 29.630 17.56 2.67 32.78 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.942884 GTAATAGCAGTACGGGCGCC 60.943 60.000 21.18 21.18 36.08 6.53
7 8 0.249155 TGTAATAGCAGTACGGGCGC 60.249 55.000 0.00 0.00 36.08 6.53
8 9 1.602165 CCTGTAATAGCAGTACGGGCG 60.602 57.143 8.13 0.00 40.30 6.13
9 10 1.684983 TCCTGTAATAGCAGTACGGGC 59.315 52.381 13.47 4.61 44.56 6.13
18 19 6.365518 GCGGTACTTTAGATTCCTGTAATAGC 59.634 42.308 0.00 0.00 0.00 2.97
74 76 1.089920 CAGTGGGCTTCCTTCAATCG 58.910 55.000 0.00 0.00 0.00 3.34
79 82 1.973812 GGTGCAGTGGGCTTCCTTC 60.974 63.158 0.00 0.00 45.15 3.46
105 108 2.941720 GAGCTGAAAAGATGGCCACTAG 59.058 50.000 8.16 3.12 0.00 2.57
147 150 3.964031 AGGTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
148 151 4.000928 AGGTCTCTCTCTCTCTCTCTCT 57.999 50.000 0.00 0.00 0.00 3.10
149 152 4.762289 AAGGTCTCTCTCTCTCTCTCTC 57.238 50.000 0.00 0.00 0.00 3.20
150 153 4.785376 AGAAAGGTCTCTCTCTCTCTCTCT 59.215 45.833 0.00 0.00 0.00 3.10
151 154 5.104259 AGAAAGGTCTCTCTCTCTCTCTC 57.896 47.826 0.00 0.00 0.00 3.20
152 155 5.256474 CAAGAAAGGTCTCTCTCTCTCTCT 58.744 45.833 0.00 0.00 30.70 3.10
153 156 4.399303 CCAAGAAAGGTCTCTCTCTCTCTC 59.601 50.000 0.00 0.00 30.70 3.20
154 157 4.202673 ACCAAGAAAGGTCTCTCTCTCTCT 60.203 45.833 0.00 0.00 37.28 3.10
155 158 4.086457 ACCAAGAAAGGTCTCTCTCTCTC 58.914 47.826 0.00 0.00 37.28 3.20
259 2425 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
263 2429 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
273 2439 0.393673 CGGCACCAGAGAGAGAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
274 2440 2.003658 GCGGCACCAGAGAGAGAGAG 62.004 65.000 0.00 0.00 0.00 3.20
275 2441 2.049185 GCGGCACCAGAGAGAGAGA 61.049 63.158 0.00 0.00 0.00 3.10
276 2442 1.603236 AAGCGGCACCAGAGAGAGAG 61.603 60.000 1.45 0.00 0.00 3.20
277 2443 1.599606 GAAGCGGCACCAGAGAGAGA 61.600 60.000 1.45 0.00 0.00 3.10
321 2494 2.542409 ATCTCAGGCTCAGCTGGGGA 62.542 60.000 17.16 3.54 0.00 4.81
352 2534 3.392616 GGAGAGGGGAATCTATCAAGCAA 59.607 47.826 0.00 0.00 0.00 3.91
484 2677 0.108585 TTCCACCCAACAGCAGAGAC 59.891 55.000 0.00 0.00 0.00 3.36
563 2768 1.673665 GCTGTGCCCACAAGGAGAG 60.674 63.158 2.45 0.00 41.33 3.20
592 2844 0.975040 TGGCCAGAGAGAAGAGGAGC 60.975 60.000 0.00 0.00 0.00 4.70
596 2848 1.345741 TGTGTTGGCCAGAGAGAAGAG 59.654 52.381 5.11 0.00 0.00 2.85
603 2855 0.738389 ACGTTTTGTGTTGGCCAGAG 59.262 50.000 5.11 0.00 0.00 3.35
621 2877 2.435059 GCCAGGAGAGGCGAACAC 60.435 66.667 0.00 0.00 46.12 3.32
628 2884 0.552848 AGAGAGAGAGCCAGGAGAGG 59.447 60.000 0.00 0.00 0.00 3.69
632 2888 0.395586 GCAGAGAGAGAGAGCCAGGA 60.396 60.000 0.00 0.00 0.00 3.86
643 2899 1.229209 AGAAACCGGGGCAGAGAGA 60.229 57.895 6.32 0.00 0.00 3.10
644 2900 1.078848 CAGAAACCGGGGCAGAGAG 60.079 63.158 6.32 0.00 0.00 3.20
645 2901 3.068881 CAGAAACCGGGGCAGAGA 58.931 61.111 6.32 0.00 0.00 3.10
646 2902 2.747855 GCAGAAACCGGGGCAGAG 60.748 66.667 6.32 0.00 0.00 3.35
647 2903 4.344865 GGCAGAAACCGGGGCAGA 62.345 66.667 6.32 0.00 0.00 4.26
664 2920 0.108138 AGGTGAAATCCGAAGAGGCG 60.108 55.000 0.00 0.00 40.77 5.52
666 2922 1.471676 CCGAGGTGAAATCCGAAGAGG 60.472 57.143 0.00 0.00 42.97 3.69
675 2931 2.125673 CGACGGCCGAGGTGAAAT 60.126 61.111 35.90 6.14 41.76 2.17
798 3058 2.498726 GGAGCTGCTCCCGAGAAG 59.501 66.667 33.62 0.00 44.36 2.85
807 3067 4.814041 GGAGGGAGGGGAGCTGCT 62.814 72.222 0.00 0.00 0.00 4.24
849 3110 5.118510 GCAATCGCGGGGAATAAAAATTATG 59.881 40.000 6.13 0.00 0.00 1.90
887 3152 1.379977 TGTAGGAGCCGAGGAGGTG 60.380 63.158 0.00 0.00 43.70 4.00
967 3234 1.745653 GGTGTTGCAGGATCTTTAGCC 59.254 52.381 0.00 0.00 0.00 3.93
986 3253 1.750399 CGGGCCAGGACAAGAATGG 60.750 63.158 4.39 0.00 37.15 3.16
1029 3296 5.878406 TTGGCAAGGAAGGAATTAAACAA 57.122 34.783 0.00 0.00 0.00 2.83
1030 3297 5.741673 GCTTTGGCAAGGAAGGAATTAAACA 60.742 40.000 14.11 0.00 38.54 2.83
1127 3397 4.386951 CGTCCACCATGGCACGGA 62.387 66.667 13.04 12.97 37.47 4.69
1129 3399 4.697756 ACCGTCCACCATGGCACG 62.698 66.667 19.68 19.68 37.47 5.34
1344 3623 8.686334 CAATAGTAACCATTAATTCCACAAGCT 58.314 33.333 0.00 0.00 0.00 3.74
1345 3624 7.435192 GCAATAGTAACCATTAATTCCACAAGC 59.565 37.037 0.00 0.00 0.00 4.01
1346 3625 8.465999 TGCAATAGTAACCATTAATTCCACAAG 58.534 33.333 0.00 0.00 0.00 3.16
1348 3627 7.946381 TGCAATAGTAACCATTAATTCCACA 57.054 32.000 0.00 0.00 0.00 4.17
1350 3629 8.815565 TCTTGCAATAGTAACCATTAATTCCA 57.184 30.769 0.00 0.00 0.00 3.53
1355 3634 9.868277 CCAAATTCTTGCAATAGTAACCATTAA 57.132 29.630 0.00 0.00 0.00 1.40
1356 3635 7.978975 GCCAAATTCTTGCAATAGTAACCATTA 59.021 33.333 0.00 0.00 0.00 1.90
1367 3646 2.093869 AGCGATGCCAAATTCTTGCAAT 60.094 40.909 0.00 0.00 0.00 3.56
1385 3664 1.159285 TGCACAGATCCAAAGAAGCG 58.841 50.000 0.00 0.00 0.00 4.68
1441 3724 2.507407 TTCAAACTAGGCCATGGGAC 57.493 50.000 15.13 0.00 0.00 4.46
1538 3821 6.421485 AGAAAAGAGTGAAGTGCCATATCAT 58.579 36.000 0.00 0.00 0.00 2.45
1539 3822 5.809001 AGAAAAGAGTGAAGTGCCATATCA 58.191 37.500 0.00 0.00 0.00 2.15
1546 3829 3.070748 GGAGGAGAAAAGAGTGAAGTGC 58.929 50.000 0.00 0.00 0.00 4.40
1552 3835 6.279882 GTCATATGAGGAGGAGAAAAGAGTG 58.720 44.000 5.42 0.00 0.00 3.51
1586 3869 8.956426 GCATCATATATATTTTCTTCCGGGAAA 58.044 33.333 11.24 0.95 33.98 3.13
1603 3887 8.620416 GTTCATACCAAGTTGTTGCATCATATA 58.380 33.333 1.45 0.00 31.64 0.86
1604 3888 7.340232 AGTTCATACCAAGTTGTTGCATCATAT 59.660 33.333 1.45 0.00 31.64 1.78
1606 3890 5.477984 AGTTCATACCAAGTTGTTGCATCAT 59.522 36.000 1.45 0.00 31.64 2.45
1628 3915 7.600375 CCATCATACGCAAATTCATCTAGTAGT 59.400 37.037 0.00 0.00 0.00 2.73
1629 3916 7.063898 CCCATCATACGCAAATTCATCTAGTAG 59.936 40.741 0.00 0.00 0.00 2.57
1630 3917 6.873605 CCCATCATACGCAAATTCATCTAGTA 59.126 38.462 0.00 0.00 0.00 1.82
1676 3966 5.050295 CCCTCGTCACTCTTTAAACTTGTTC 60.050 44.000 0.00 0.00 0.00 3.18
1844 4138 8.753133 TCATCAGAGAAAAGCTTATCTTAGTCA 58.247 33.333 0.00 0.00 30.56 3.41
1845 4139 9.593134 TTCATCAGAGAAAAGCTTATCTTAGTC 57.407 33.333 0.00 0.00 30.56 2.59
1864 4158 7.042187 GCTGTGAACTAATACCATCTTCATCAG 60.042 40.741 0.00 0.00 0.00 2.90
1872 4166 4.051922 CTCGGCTGTGAACTAATACCATC 58.948 47.826 0.00 0.00 0.00 3.51
1940 4234 8.855279 GCATGCTTTCGTGTACATAAAAATAAA 58.145 29.630 11.37 0.00 0.00 1.40
1941 4235 7.486551 GGCATGCTTTCGTGTACATAAAAATAA 59.513 33.333 18.92 0.00 0.00 1.40
1942 4236 6.970043 GGCATGCTTTCGTGTACATAAAAATA 59.030 34.615 18.92 0.00 0.00 1.40
1993 4306 1.228154 GAGTTCACACCCGGCCTTT 60.228 57.895 0.00 0.00 0.00 3.11
2015 4328 3.369835 GCATCGCGGTAATATAAGCAC 57.630 47.619 6.13 0.00 0.00 4.40
2036 4350 7.067494 AGGGCACTTTTATTGACTCATAATGAC 59.933 37.037 0.00 0.00 0.00 3.06
2063 4383 9.249053 TGCCTTACCACATTCTATTTTTGATAA 57.751 29.630 0.00 0.00 0.00 1.75
2096 4416 7.119699 TGCCTTATCACATCACTGTAAAAGAAG 59.880 37.037 0.00 0.00 33.14 2.85
2235 4556 7.439157 TGTTACTCATGGAATCTTTGAAGTG 57.561 36.000 0.00 0.00 0.00 3.16
2241 4562 7.103641 ACGTGTATGTTACTCATGGAATCTTT 58.896 34.615 0.00 0.00 37.91 2.52
2384 4705 6.487331 CCCAACCACAAAAGTGTAGTATGTAA 59.513 38.462 0.00 0.00 35.72 2.41
2391 4712 2.661718 ACCCCAACCACAAAAGTGTAG 58.338 47.619 0.00 0.00 35.72 2.74
2408 4729 3.319122 AGCATCACAGTTTCTCAAAACCC 59.681 43.478 0.00 0.00 44.87 4.11
2634 4957 3.425162 ACTGAAAACTGGAGACATCCC 57.575 47.619 0.00 0.00 46.04 3.85
2703 5026 1.886313 CAGGCCATAGCACTGCTCG 60.886 63.158 6.86 0.00 42.56 5.03
2745 5068 2.914695 ACACACCAAAGCTTACCGTA 57.085 45.000 0.00 0.00 0.00 4.02
2834 5157 1.004918 ACCAGGCTACGAGCAACAC 60.005 57.895 8.71 0.00 44.75 3.32
2909 5232 3.205784 AGGATGCCTTCATACTGCTTC 57.794 47.619 0.00 0.00 42.23 3.86
3011 5334 5.491070 TCTCTGTAAATGACATGGACTTGG 58.509 41.667 0.00 0.00 37.45 3.61
3012 5335 6.019237 CGATCTCTGTAAATGACATGGACTTG 60.019 42.308 0.00 0.00 37.45 3.16
3013 5336 6.045318 CGATCTCTGTAAATGACATGGACTT 58.955 40.000 0.00 0.00 37.45 3.01
3021 5344 4.402056 TTCCCCGATCTCTGTAAATGAC 57.598 45.455 0.00 0.00 0.00 3.06
3035 5358 2.092321 TGAAGAGGTTTGTTTTCCCCGA 60.092 45.455 0.00 0.00 0.00 5.14
3036 5359 2.303175 TGAAGAGGTTTGTTTTCCCCG 58.697 47.619 0.00 0.00 0.00 5.73
3106 5433 0.732571 AAACATGGTCATAAGCGGCG 59.267 50.000 0.51 0.51 0.00 6.46
3118 5445 3.090952 TGCCTTCGTTTCAAAACATGG 57.909 42.857 0.00 5.60 38.81 3.66
3119 5446 5.462034 TTTTGCCTTCGTTTCAAAACATG 57.538 34.783 6.45 0.00 38.81 3.21
3120 5447 7.961325 ATATTTTGCCTTCGTTTCAAAACAT 57.039 28.000 6.45 0.00 40.89 2.71
3121 5448 7.778470 AATATTTTGCCTTCGTTTCAAAACA 57.222 28.000 6.45 0.00 40.89 2.83
3122 5449 9.575702 GTAAATATTTTGCCTTCGTTTCAAAAC 57.424 29.630 5.91 0.00 40.89 2.43
3123 5450 8.766151 GGTAAATATTTTGCCTTCGTTTCAAAA 58.234 29.630 5.91 0.00 41.86 2.44
3124 5451 8.145122 AGGTAAATATTTTGCCTTCGTTTCAAA 58.855 29.630 5.91 0.00 0.00 2.69
3125 5452 7.662897 AGGTAAATATTTTGCCTTCGTTTCAA 58.337 30.769 5.91 0.00 0.00 2.69
3126 5453 7.040340 TGAGGTAAATATTTTGCCTTCGTTTCA 60.040 33.333 18.91 11.87 0.00 2.69
3127 5454 7.309920 TGAGGTAAATATTTTGCCTTCGTTTC 58.690 34.615 18.91 10.18 0.00 2.78
3128 5455 7.222000 TGAGGTAAATATTTTGCCTTCGTTT 57.778 32.000 18.91 3.32 0.00 3.60
3129 5456 6.827586 TGAGGTAAATATTTTGCCTTCGTT 57.172 33.333 18.91 3.84 0.00 3.85
3130 5457 6.238374 CGATGAGGTAAATATTTTGCCTTCGT 60.238 38.462 21.89 16.61 29.74 3.85
3131 5458 6.018262 TCGATGAGGTAAATATTTTGCCTTCG 60.018 38.462 22.95 22.95 32.28 3.79
3132 5459 7.259290 TCGATGAGGTAAATATTTTGCCTTC 57.741 36.000 18.91 14.29 0.00 3.46
3133 5460 7.823745 ATCGATGAGGTAAATATTTTGCCTT 57.176 32.000 18.91 9.18 0.00 4.35
3134 5461 7.823745 AATCGATGAGGTAAATATTTTGCCT 57.176 32.000 18.30 18.30 0.00 4.75
3135 5462 9.559958 CATAATCGATGAGGTAAATATTTTGCC 57.440 33.333 5.91 9.33 37.82 4.52
3136 5463 9.559958 CCATAATCGATGAGGTAAATATTTTGC 57.440 33.333 5.91 0.28 37.82 3.68
3141 5468 9.605275 CATGACCATAATCGATGAGGTAAATAT 57.395 33.333 14.45 6.72 37.82 1.28
3142 5469 8.040727 CCATGACCATAATCGATGAGGTAAATA 58.959 37.037 14.45 5.14 37.82 1.40
3143 5470 6.881065 CCATGACCATAATCGATGAGGTAAAT 59.119 38.462 14.45 9.88 37.82 1.40
3144 5471 6.230472 CCATGACCATAATCGATGAGGTAAA 58.770 40.000 14.45 8.39 37.82 2.01
3145 5472 5.793817 CCATGACCATAATCGATGAGGTAA 58.206 41.667 14.45 9.43 37.82 2.85
3146 5473 4.322725 GCCATGACCATAATCGATGAGGTA 60.323 45.833 14.45 0.00 37.82 3.08
3147 5474 3.557898 GCCATGACCATAATCGATGAGGT 60.558 47.826 14.40 14.40 37.82 3.85
3148 5475 3.005554 GCCATGACCATAATCGATGAGG 58.994 50.000 0.00 3.96 37.82 3.86
3149 5476 2.669924 CGCCATGACCATAATCGATGAG 59.330 50.000 0.00 0.00 37.82 2.90
3150 5477 2.687370 CGCCATGACCATAATCGATGA 58.313 47.619 0.00 0.00 37.82 2.92
3151 5478 1.129251 GCGCCATGACCATAATCGATG 59.871 52.381 0.00 0.00 35.05 3.84
3152 5479 1.270785 TGCGCCATGACCATAATCGAT 60.271 47.619 4.18 0.00 0.00 3.59
3153 5480 0.105778 TGCGCCATGACCATAATCGA 59.894 50.000 4.18 0.00 0.00 3.59
3154 5481 0.514255 CTGCGCCATGACCATAATCG 59.486 55.000 4.18 0.00 0.00 3.34
3155 5482 0.239347 GCTGCGCCATGACCATAATC 59.761 55.000 4.18 0.00 0.00 1.75
3156 5483 2.334307 GCTGCGCCATGACCATAAT 58.666 52.632 4.18 0.00 0.00 1.28
3157 5484 3.826221 GCTGCGCCATGACCATAA 58.174 55.556 4.18 0.00 0.00 1.90
3242 5614 1.064825 TCCCCTCCTTCTTGGTGTTC 58.935 55.000 0.00 0.00 37.07 3.18
3248 5620 0.332632 TGCCATTCCCCTCCTTCTTG 59.667 55.000 0.00 0.00 0.00 3.02
3261 5633 1.377725 CTCCAGCGTCCTTGCCATT 60.378 57.895 0.00 0.00 34.65 3.16
3276 5648 2.069430 CCCTCTTGCCTCCTCCTCC 61.069 68.421 0.00 0.00 0.00 4.30
3277 5649 2.741055 GCCCTCTTGCCTCCTCCTC 61.741 68.421 0.00 0.00 0.00 3.71
3278 5650 2.690510 GCCCTCTTGCCTCCTCCT 60.691 66.667 0.00 0.00 0.00 3.69
3329 5701 2.833582 GGGATGACGGAGCTCGGA 60.834 66.667 26.25 6.71 44.45 4.55
3350 5722 4.760047 CTCCGGGAGTGCGGGTTG 62.760 72.222 16.15 0.00 0.00 3.77
3356 5728 4.479993 ATGCTGCTCCGGGAGTGC 62.480 66.667 26.09 26.09 34.15 4.40
3458 5830 4.035102 AGCGGGGTGAAGAAGGGC 62.035 66.667 0.00 0.00 0.00 5.19
3578 5950 2.238847 GATCTGGGTGCCTGCGTGTA 62.239 60.000 0.00 0.00 0.00 2.90
3579 5951 3.612247 GATCTGGGTGCCTGCGTGT 62.612 63.158 0.00 0.00 0.00 4.49
3580 5952 2.821366 GATCTGGGTGCCTGCGTG 60.821 66.667 0.00 0.00 0.00 5.34
3685 6058 1.480954 TCAGGGAAGAGGTAATGCGAC 59.519 52.381 0.00 0.00 0.00 5.19
3691 6064 3.442076 GGAGTTCTCAGGGAAGAGGTAA 58.558 50.000 2.24 0.00 36.30 2.85
3706 6079 0.670854 GAGAACCAGCACCGGAGTTC 60.671 60.000 9.46 12.65 39.09 3.01
3723 6096 3.496337 CCCATCATCACAAGATCCCTGAG 60.496 52.174 0.00 0.00 30.20 3.35
3809 6182 5.593095 TGACACAGATACCTGATAGTACCAC 59.407 44.000 0.00 0.00 43.02 4.16
3815 6188 6.319911 TGAGTTCTGACACAGATACCTGATAG 59.680 42.308 0.00 0.00 43.02 2.08
3816 6189 6.187682 TGAGTTCTGACACAGATACCTGATA 58.812 40.000 0.00 0.00 43.02 2.15
3818 6191 4.407365 TGAGTTCTGACACAGATACCTGA 58.593 43.478 0.00 0.00 43.02 3.86
3819 6192 4.460731 TCTGAGTTCTGACACAGATACCTG 59.539 45.833 2.30 0.00 44.86 4.00
3820 6193 4.667573 TCTGAGTTCTGACACAGATACCT 58.332 43.478 2.30 0.29 44.86 3.08
3835 6212 9.442047 CCTGAAGTTTGATACTTATTCTGAGTT 57.558 33.333 0.00 0.00 47.00 3.01
3836 6213 8.043710 CCCTGAAGTTTGATACTTATTCTGAGT 58.956 37.037 0.00 0.00 47.00 3.41
3837 6214 8.043710 ACCCTGAAGTTTGATACTTATTCTGAG 58.956 37.037 0.00 0.00 47.00 3.35
3838 6215 7.918076 ACCCTGAAGTTTGATACTTATTCTGA 58.082 34.615 0.00 0.00 47.00 3.27
3870 6247 9.227777 ACAAAGTTTCAGACCCTAATAATACAC 57.772 33.333 0.00 0.00 0.00 2.90
3899 6277 0.039618 ACCCCAGTACATTGCCAAGG 59.960 55.000 0.00 0.00 0.00 3.61
3916 6294 7.661127 AAACAAACAAAAACTCCAACTTACC 57.339 32.000 0.00 0.00 0.00 2.85
3977 6359 6.835914 AGCTTACAAATCATATATTGCGAGC 58.164 36.000 0.00 11.35 37.71 5.03
4077 6461 2.076863 CAGTGAACCGAGGAACAATCC 58.923 52.381 0.00 0.00 46.98 3.01
4078 6462 2.737252 GTCAGTGAACCGAGGAACAATC 59.263 50.000 0.00 0.00 0.00 2.67
4098 6482 9.225436 AGAAAATGGTGTTGTGTTTTTATTTGT 57.775 25.926 0.00 0.00 0.00 2.83
4107 6491 8.785329 ATTGTTAAAGAAAATGGTGTTGTGTT 57.215 26.923 0.00 0.00 0.00 3.32
4145 6529 0.249280 GCACGTTGTTTTTCCCCTGG 60.249 55.000 0.00 0.00 0.00 4.45
4192 6577 4.136796 TGGAGTTTGAATTCAGAGGTGTG 58.863 43.478 8.41 0.00 0.00 3.82
4268 6687 1.676006 CTCAAGTTGGCTTTGAACGGT 59.324 47.619 2.34 0.00 31.49 4.83
4271 6690 2.869233 TGCTCAAGTTGGCTTTGAAC 57.131 45.000 14.71 0.00 31.49 3.18
4318 6737 1.923864 GTTTTCAACCCTGTTTGTGCG 59.076 47.619 0.00 0.00 0.00 5.34
4338 6757 9.037737 GTATCATGATGGATTTGTGGAAATTTG 57.962 33.333 18.72 0.00 31.58 2.32
4365 7481 5.706916 CAAAGAACTCCTTCACATTGATGG 58.293 41.667 2.37 2.37 41.54 3.51
4376 7492 6.715347 ATTAAGTTGTGCAAAGAACTCCTT 57.285 33.333 7.32 0.00 36.47 3.36
4388 7504 3.359695 TCCCAGGGTATTAAGTTGTGC 57.640 47.619 5.01 0.00 0.00 4.57
4405 7524 2.426842 AGCTACCTCTTTTGCATCCC 57.573 50.000 0.00 0.00 0.00 3.85
4462 7581 5.431765 GTGAAATCTTCAATCCTGAGCCTA 58.568 41.667 0.00 0.00 42.15 3.93
4465 7584 3.379688 GGGTGAAATCTTCAATCCTGAGC 59.620 47.826 0.00 0.00 42.15 4.26
4496 7615 4.405358 TGCCATCCTTCTTTCAGTTTGTTT 59.595 37.500 0.00 0.00 0.00 2.83
4514 7633 0.260816 ATGGTTGAGCATCCTGCCAT 59.739 50.000 0.00 0.00 46.52 4.40
4518 7637 1.471119 AAGCATGGTTGAGCATCCTG 58.529 50.000 9.83 0.00 0.00 3.86
4614 7733 3.003480 GTTGATCTGGCTGGTAACTGAC 58.997 50.000 0.00 0.00 45.43 3.51
4636 7755 8.826765 TCTCCATAGGAAGTTTCTCAAATACTT 58.173 33.333 0.00 0.00 34.97 2.24
4676 7795 1.560505 AAGGGCATGTCCAACAATCC 58.439 50.000 20.74 0.00 36.21 3.01
4697 7816 4.515567 GGTTGCATACTTTATCCTAGGCAC 59.484 45.833 2.96 0.00 29.84 5.01
4698 7817 4.445735 GGGTTGCATACTTTATCCTAGGCA 60.446 45.833 2.96 0.00 0.00 4.75
4699 7818 4.072839 GGGTTGCATACTTTATCCTAGGC 58.927 47.826 2.96 0.00 0.00 3.93
4700 7819 5.304686 TGGGTTGCATACTTTATCCTAGG 57.695 43.478 0.82 0.82 0.00 3.02
4701 7820 7.639113 TTTTGGGTTGCATACTTTATCCTAG 57.361 36.000 0.00 0.00 0.00 3.02
4702 7821 6.096282 GCTTTTGGGTTGCATACTTTATCCTA 59.904 38.462 0.00 0.00 0.00 2.94
4703 7822 5.105351 GCTTTTGGGTTGCATACTTTATCCT 60.105 40.000 0.00 0.00 0.00 3.24
4704 7823 5.105351 AGCTTTTGGGTTGCATACTTTATCC 60.105 40.000 0.00 0.00 0.00 2.59
4705 7824 5.965922 AGCTTTTGGGTTGCATACTTTATC 58.034 37.500 0.00 0.00 0.00 1.75
4706 7825 5.480073 TGAGCTTTTGGGTTGCATACTTTAT 59.520 36.000 0.00 0.00 0.00 1.40
4707 7826 4.830046 TGAGCTTTTGGGTTGCATACTTTA 59.170 37.500 0.00 0.00 0.00 1.85
4708 7827 3.640967 TGAGCTTTTGGGTTGCATACTTT 59.359 39.130 0.00 0.00 0.00 2.66
4709 7828 3.230134 TGAGCTTTTGGGTTGCATACTT 58.770 40.909 0.00 0.00 0.00 2.24
4710 7829 2.875296 TGAGCTTTTGGGTTGCATACT 58.125 42.857 0.00 0.00 0.00 2.12
4711 7830 3.578688 CTTGAGCTTTTGGGTTGCATAC 58.421 45.455 0.00 0.00 0.00 2.39
4712 7831 2.562298 CCTTGAGCTTTTGGGTTGCATA 59.438 45.455 0.00 0.00 0.00 3.14
4713 7832 1.345415 CCTTGAGCTTTTGGGTTGCAT 59.655 47.619 0.00 0.00 0.00 3.96
4714 7833 0.752054 CCTTGAGCTTTTGGGTTGCA 59.248 50.000 0.00 0.00 0.00 4.08
4715 7834 1.000171 CTCCTTGAGCTTTTGGGTTGC 60.000 52.381 0.00 0.00 0.00 4.17
4716 7835 1.615392 CCTCCTTGAGCTTTTGGGTTG 59.385 52.381 0.00 0.00 0.00 3.77
4717 7836 1.217942 ACCTCCTTGAGCTTTTGGGTT 59.782 47.619 0.00 0.00 0.00 4.11
4718 7837 0.853530 ACCTCCTTGAGCTTTTGGGT 59.146 50.000 0.00 0.00 0.00 4.51
4719 7838 1.074566 AGACCTCCTTGAGCTTTTGGG 59.925 52.381 0.00 0.00 0.00 4.12
4720 7839 2.575805 AGACCTCCTTGAGCTTTTGG 57.424 50.000 0.00 0.00 0.00 3.28
4721 7840 3.261897 TCCTAGACCTCCTTGAGCTTTTG 59.738 47.826 0.00 0.00 0.00 2.44
4722 7841 3.521727 TCCTAGACCTCCTTGAGCTTTT 58.478 45.455 0.00 0.00 0.00 2.27
4723 7842 3.191888 TCCTAGACCTCCTTGAGCTTT 57.808 47.619 0.00 0.00 0.00 3.51
4724 7843 2.930109 TCCTAGACCTCCTTGAGCTT 57.070 50.000 0.00 0.00 0.00 3.74
4725 7844 2.930109 TTCCTAGACCTCCTTGAGCT 57.070 50.000 0.00 0.00 0.00 4.09
4726 7845 5.816955 AATATTCCTAGACCTCCTTGAGC 57.183 43.478 0.00 0.00 0.00 4.26
4727 7846 8.748412 CATCTAATATTCCTAGACCTCCTTGAG 58.252 40.741 0.00 0.00 0.00 3.02
4728 7847 8.235230 ACATCTAATATTCCTAGACCTCCTTGA 58.765 37.037 0.00 0.00 0.00 3.02
4729 7848 8.310382 CACATCTAATATTCCTAGACCTCCTTG 58.690 40.741 0.00 0.00 0.00 3.61
4730 7849 7.456269 CCACATCTAATATTCCTAGACCTCCTT 59.544 40.741 0.00 0.00 0.00 3.36
4731 7850 6.957020 CCACATCTAATATTCCTAGACCTCCT 59.043 42.308 0.00 0.00 0.00 3.69
4732 7851 6.351456 GCCACATCTAATATTCCTAGACCTCC 60.351 46.154 0.00 0.00 0.00 4.30
4733 7852 6.211584 TGCCACATCTAATATTCCTAGACCTC 59.788 42.308 0.00 0.00 0.00 3.85
4734 7853 6.014156 GTGCCACATCTAATATTCCTAGACCT 60.014 42.308 0.00 0.00 0.00 3.85
4735 7854 6.014156 AGTGCCACATCTAATATTCCTAGACC 60.014 42.308 0.00 0.00 0.00 3.85
4736 7855 6.998802 AGTGCCACATCTAATATTCCTAGAC 58.001 40.000 0.00 0.00 0.00 2.59
4737 7856 7.728532 TGTAGTGCCACATCTAATATTCCTAGA 59.271 37.037 0.00 0.00 0.00 2.43
4738 7857 7.896811 TGTAGTGCCACATCTAATATTCCTAG 58.103 38.462 0.00 0.00 0.00 3.02
4739 7858 7.849322 TGTAGTGCCACATCTAATATTCCTA 57.151 36.000 0.00 0.00 0.00 2.94
4740 7859 6.747414 TGTAGTGCCACATCTAATATTCCT 57.253 37.500 0.00 0.00 0.00 3.36
4741 7860 8.936864 GTTATGTAGTGCCACATCTAATATTCC 58.063 37.037 0.00 0.00 39.77 3.01
4742 7861 9.489084 TGTTATGTAGTGCCACATCTAATATTC 57.511 33.333 0.00 0.00 39.77 1.75
4743 7862 9.845740 TTGTTATGTAGTGCCACATCTAATATT 57.154 29.630 0.00 0.00 39.77 1.28
4744 7863 9.494271 CTTGTTATGTAGTGCCACATCTAATAT 57.506 33.333 0.00 0.00 39.77 1.28
4745 7864 7.931407 CCTTGTTATGTAGTGCCACATCTAATA 59.069 37.037 0.00 0.00 39.77 0.98
4746 7865 6.767902 CCTTGTTATGTAGTGCCACATCTAAT 59.232 38.462 0.00 0.00 39.77 1.73
4747 7866 6.112734 CCTTGTTATGTAGTGCCACATCTAA 58.887 40.000 0.00 0.00 39.77 2.10
4748 7867 5.670485 CCTTGTTATGTAGTGCCACATCTA 58.330 41.667 0.00 0.00 39.77 1.98
4749 7868 4.517285 CCTTGTTATGTAGTGCCACATCT 58.483 43.478 0.00 0.00 39.77 2.90
4750 7869 3.065371 GCCTTGTTATGTAGTGCCACATC 59.935 47.826 0.00 0.00 39.77 3.06
4751 7870 3.016736 GCCTTGTTATGTAGTGCCACAT 58.983 45.455 0.00 1.89 41.88 3.21
4752 7871 2.039746 AGCCTTGTTATGTAGTGCCACA 59.960 45.455 0.00 0.00 0.00 4.17
4753 7872 2.711542 AGCCTTGTTATGTAGTGCCAC 58.288 47.619 0.00 0.00 0.00 5.01
4754 7873 3.433306 AAGCCTTGTTATGTAGTGCCA 57.567 42.857 0.00 0.00 0.00 4.92
4755 7874 3.756434 TCAAAGCCTTGTTATGTAGTGCC 59.244 43.478 0.00 0.00 33.94 5.01
4756 7875 5.123820 TCATCAAAGCCTTGTTATGTAGTGC 59.876 40.000 0.00 0.00 33.94 4.40
4757 7876 6.741992 TCATCAAAGCCTTGTTATGTAGTG 57.258 37.500 0.00 0.00 33.94 2.74
4758 7877 7.112122 TCATCATCAAAGCCTTGTTATGTAGT 58.888 34.615 0.00 0.00 33.94 2.73
4759 7878 7.558161 TCATCATCAAAGCCTTGTTATGTAG 57.442 36.000 0.00 0.00 33.94 2.74
4760 7879 7.828717 TCTTCATCATCAAAGCCTTGTTATGTA 59.171 33.333 0.00 0.00 33.94 2.29
4761 7880 6.660521 TCTTCATCATCAAAGCCTTGTTATGT 59.339 34.615 0.00 0.00 33.94 2.29
4762 7881 7.092137 TCTTCATCATCAAAGCCTTGTTATG 57.908 36.000 0.00 0.00 33.94 1.90
4763 7882 7.707624 TTCTTCATCATCAAAGCCTTGTTAT 57.292 32.000 0.00 0.00 33.94 1.89
4764 7883 7.707624 ATTCTTCATCATCAAAGCCTTGTTA 57.292 32.000 0.00 0.00 33.94 2.41
4765 7884 6.600882 ATTCTTCATCATCAAAGCCTTGTT 57.399 33.333 0.00 0.00 33.94 2.83
4766 7885 7.893124 ATATTCTTCATCATCAAAGCCTTGT 57.107 32.000 0.00 0.00 33.94 3.16
4767 7886 8.410912 TGAATATTCTTCATCATCAAAGCCTTG 58.589 33.333 16.24 0.00 0.00 3.61
4768 7887 8.529424 TGAATATTCTTCATCATCAAAGCCTT 57.471 30.769 16.24 0.00 0.00 4.35
4769 7888 8.529424 TTGAATATTCTTCATCATCAAAGCCT 57.471 30.769 16.24 0.00 0.00 4.58
4770 7889 9.590451 TTTTGAATATTCTTCATCATCAAAGCC 57.410 29.630 16.24 0.00 36.85 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.