Multiple sequence alignment - TraesCS5A01G372300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G372300 chr5A 100.000 3616 0 0 780 4395 570774159 570777774 0.000000e+00 6678.0
1 TraesCS5A01G372300 chr5A 100.000 264 0 0 1 264 570773380 570773643 5.110000e-134 488.0
2 TraesCS5A01G372300 chr5A 78.615 491 46 19 2316 2793 45927944 45927500 2.010000e-68 270.0
3 TraesCS5A01G372300 chr5D 91.137 2956 185 29 836 3734 451905266 451908201 0.000000e+00 3936.0
4 TraesCS5A01G372300 chr5D 83.774 530 48 19 3817 4330 451908203 451908710 6.660000e-128 468.0
5 TraesCS5A01G372300 chr5B 90.013 3014 204 39 780 3723 551675220 551678206 0.000000e+00 3808.0
6 TraesCS5A01G372300 chr5B 85.976 328 29 9 4084 4395 551678343 551678669 7.040000e-88 335.0
7 TraesCS5A01G372300 chr5B 87.195 164 17 2 2316 2479 60810003 60810162 2.700000e-42 183.0
8 TraesCS5A01G372300 chr5B 97.436 39 1 0 3932 3970 551678291 551678329 2.840000e-07 67.6
9 TraesCS5A01G372300 chr3A 84.691 405 37 11 2316 2718 53327630 53327249 8.920000e-102 381.0
10 TraesCS5A01G372300 chr1A 81.274 518 53 16 2316 2811 82126721 82126226 3.210000e-101 379.0
11 TraesCS5A01G372300 chr1A 95.181 83 4 0 3732 3814 481241291 481241373 9.920000e-27 132.0
12 TraesCS5A01G372300 chr1A 87.097 62 8 0 2522 2583 82126413 82126352 2.190000e-08 71.3
13 TraesCS5A01G372300 chr3B 84.198 405 39 11 2316 2718 758404327 758403946 1.930000e-98 370.0
14 TraesCS5A01G372300 chr3B 93.258 89 3 2 3729 3814 284678839 284678927 1.280000e-25 128.0
15 TraesCS5A01G372300 chr7D 89.600 125 10 2 4208 4332 362375835 362375714 5.890000e-34 156.0
16 TraesCS5A01G372300 chr7D 91.489 94 4 3 3724 3814 167548512 167548420 4.610000e-25 126.0
17 TraesCS5A01G372300 chr7A 89.431 123 10 2 4210 4332 380516167 380516048 7.610000e-33 152.0
18 TraesCS5A01G372300 chr1B 94.382 89 3 1 3728 3814 645568316 645568228 7.670000e-28 135.0
19 TraesCS5A01G372300 chr4D 95.294 85 2 1 3732 3814 19442563 19442647 2.760000e-27 134.0
20 TraesCS5A01G372300 chr3D 90.909 99 5 3 3727 3821 409967702 409967800 3.570000e-26 130.0
21 TraesCS5A01G372300 chr1D 93.182 88 4 1 3729 3814 209139274 209139361 1.280000e-25 128.0
22 TraesCS5A01G372300 chr6D 92.222 90 5 1 3731 3818 403969122 403969211 4.610000e-25 126.0
23 TraesCS5A01G372300 chr4B 91.765 85 5 1 3732 3814 29271922 29271838 2.780000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G372300 chr5A 570773380 570777774 4394 False 3583.000000 6678 100.000000 1 4395 2 chr5A.!!$F1 4394
1 TraesCS5A01G372300 chr5D 451905266 451908710 3444 False 2202.000000 3936 87.455500 836 4330 2 chr5D.!!$F1 3494
2 TraesCS5A01G372300 chr5B 551675220 551678669 3449 False 1403.533333 3808 91.141667 780 4395 3 chr5B.!!$F2 3615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.110486 TTGTCCACTTTCTCCTGGCC 59.890 55.0 0.00 0.0 0.00 5.36 F
992 1006 0.457851 CCTCGATCTCGCCTGAACTT 59.542 55.0 0.00 0.0 39.60 2.66 F
1340 1380 0.179043 TTGCCCTACGTGCAACTCAA 60.179 50.0 7.62 0.0 43.36 3.02 F
2236 2286 0.238817 TTAACACCCGCGACAAATGC 59.761 50.0 8.23 0.0 0.00 3.56 F
2577 2630 0.473755 TCCAGCACAGCTTTCCTTGA 59.526 50.0 0.00 0.0 36.40 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 1354 0.596082 GCACGTAGGGCAAACATTGT 59.404 50.0 0.00 0.0 0.00 2.71 R
2489 2541 0.807496 GCATGCACAAGAGAACCTCC 59.193 55.0 14.21 0.0 0.00 4.30 R
3016 3071 0.034477 GTGGTGGGGAGGGTAACATG 60.034 60.0 0.00 0.0 39.74 3.21 R
3091 3157 0.389426 TCGGCGCTTCTTAAGGTGAC 60.389 55.0 7.64 0.0 0.00 3.67 R
4263 4359 0.110486 TCTTGGTGAACCCCAGCTTC 59.890 55.0 0.00 0.0 43.38 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.638239 TTTTCTATATAACGACGTTTGTAAGGT 57.362 29.630 19.71 0.00 0.00 3.50
37 38 9.638239 TTTCTATATAACGACGTTTGTAAGGTT 57.362 29.630 19.71 1.13 0.00 3.50
38 39 8.619146 TCTATATAACGACGTTTGTAAGGTTG 57.381 34.615 19.71 1.69 36.86 3.77
39 40 2.742954 AACGACGTTTGTAAGGTTGC 57.257 45.000 7.57 0.00 34.74 4.17
40 41 0.578211 ACGACGTTTGTAAGGTTGCG 59.422 50.000 0.00 0.00 34.74 4.85
41 42 0.578211 CGACGTTTGTAAGGTTGCGT 59.422 50.000 0.00 0.00 35.20 5.24
42 43 1.655325 CGACGTTTGTAAGGTTGCGTG 60.655 52.381 0.00 0.00 32.56 5.34
43 44 1.593933 GACGTTTGTAAGGTTGCGTGA 59.406 47.619 0.00 0.00 32.56 4.35
44 45 2.008329 ACGTTTGTAAGGTTGCGTGAA 58.992 42.857 0.00 0.00 0.00 3.18
45 46 2.031191 ACGTTTGTAAGGTTGCGTGAAG 59.969 45.455 0.00 0.00 0.00 3.02
59 60 4.197107 GCGTGAAGCTTAATGTATGGTC 57.803 45.455 0.00 0.00 44.04 4.02
60 61 3.871594 GCGTGAAGCTTAATGTATGGTCT 59.128 43.478 0.00 0.00 44.04 3.85
61 62 4.332819 GCGTGAAGCTTAATGTATGGTCTT 59.667 41.667 0.00 0.00 44.04 3.01
62 63 5.522460 GCGTGAAGCTTAATGTATGGTCTTA 59.478 40.000 0.00 0.00 44.04 2.10
63 64 6.292381 GCGTGAAGCTTAATGTATGGTCTTAG 60.292 42.308 0.00 0.00 44.04 2.18
64 65 6.292381 CGTGAAGCTTAATGTATGGTCTTAGC 60.292 42.308 0.00 0.00 0.00 3.09
65 66 6.017852 GTGAAGCTTAATGTATGGTCTTAGCC 60.018 42.308 0.00 0.00 0.00 3.93
66 67 4.974399 AGCTTAATGTATGGTCTTAGCCC 58.026 43.478 0.00 0.00 0.00 5.19
67 68 4.660771 AGCTTAATGTATGGTCTTAGCCCT 59.339 41.667 0.00 0.00 0.00 5.19
68 69 5.132816 AGCTTAATGTATGGTCTTAGCCCTT 59.867 40.000 0.00 0.00 0.00 3.95
69 70 5.828328 GCTTAATGTATGGTCTTAGCCCTTT 59.172 40.000 0.00 0.00 0.00 3.11
70 71 6.321435 GCTTAATGTATGGTCTTAGCCCTTTT 59.679 38.462 0.00 0.00 0.00 2.27
71 72 7.147897 GCTTAATGTATGGTCTTAGCCCTTTTT 60.148 37.037 0.00 0.00 0.00 1.94
72 73 6.775594 AATGTATGGTCTTAGCCCTTTTTC 57.224 37.500 0.00 0.00 0.00 2.29
73 74 4.258543 TGTATGGTCTTAGCCCTTTTTCG 58.741 43.478 0.00 0.00 0.00 3.46
74 75 1.530323 TGGTCTTAGCCCTTTTTCGC 58.470 50.000 0.00 0.00 0.00 4.70
75 76 1.202830 TGGTCTTAGCCCTTTTTCGCA 60.203 47.619 0.00 0.00 0.00 5.10
76 77 1.883926 GGTCTTAGCCCTTTTTCGCAA 59.116 47.619 0.00 0.00 0.00 4.85
77 78 2.492088 GGTCTTAGCCCTTTTTCGCAAT 59.508 45.455 0.00 0.00 0.00 3.56
78 79 3.692593 GGTCTTAGCCCTTTTTCGCAATA 59.307 43.478 0.00 0.00 0.00 1.90
79 80 4.157105 GGTCTTAGCCCTTTTTCGCAATAA 59.843 41.667 0.00 0.00 0.00 1.40
80 81 5.332707 GTCTTAGCCCTTTTTCGCAATAAG 58.667 41.667 0.00 0.00 0.00 1.73
81 82 5.123344 GTCTTAGCCCTTTTTCGCAATAAGA 59.877 40.000 0.00 0.00 0.00 2.10
82 83 5.708230 TCTTAGCCCTTTTTCGCAATAAGAA 59.292 36.000 0.00 0.00 0.00 2.52
83 84 6.377146 TCTTAGCCCTTTTTCGCAATAAGAAT 59.623 34.615 0.00 0.00 0.00 2.40
84 85 5.405935 AGCCCTTTTTCGCAATAAGAATT 57.594 34.783 0.00 0.00 0.00 2.17
85 86 6.524101 AGCCCTTTTTCGCAATAAGAATTA 57.476 33.333 0.00 0.00 33.48 1.40
86 87 6.930731 AGCCCTTTTTCGCAATAAGAATTAA 58.069 32.000 0.00 0.00 32.17 1.40
87 88 7.382898 AGCCCTTTTTCGCAATAAGAATTAAA 58.617 30.769 0.00 0.00 32.17 1.52
88 89 7.875554 AGCCCTTTTTCGCAATAAGAATTAAAA 59.124 29.630 0.00 0.00 32.17 1.52
89 90 8.664798 GCCCTTTTTCGCAATAAGAATTAAAAT 58.335 29.630 0.00 0.00 32.17 1.82
125 126 8.926715 ATTCTTTAAAAGTTGTCAACTCCAAC 57.073 30.769 18.42 0.00 41.91 3.77
126 127 6.859017 TCTTTAAAAGTTGTCAACTCCAACC 58.141 36.000 18.42 0.00 42.46 3.77
127 128 5.585820 TTAAAAGTTGTCAACTCCAACCC 57.414 39.130 18.42 0.00 42.46 4.11
128 129 2.818751 AAGTTGTCAACTCCAACCCA 57.181 45.000 18.42 0.00 42.46 4.51
129 130 2.348411 AGTTGTCAACTCCAACCCAG 57.652 50.000 12.62 0.00 42.46 4.45
130 131 1.564348 AGTTGTCAACTCCAACCCAGT 59.436 47.619 12.62 0.00 42.46 4.00
131 132 2.025321 AGTTGTCAACTCCAACCCAGTT 60.025 45.455 12.62 0.00 42.46 3.16
132 133 2.341846 TGTCAACTCCAACCCAGTTC 57.658 50.000 0.00 0.00 31.40 3.01
133 134 1.562008 TGTCAACTCCAACCCAGTTCA 59.438 47.619 0.00 0.00 31.40 3.18
134 135 2.025793 TGTCAACTCCAACCCAGTTCAA 60.026 45.455 0.00 0.00 31.40 2.69
135 136 3.020984 GTCAACTCCAACCCAGTTCAAA 58.979 45.455 0.00 0.00 31.40 2.69
136 137 3.636764 GTCAACTCCAACCCAGTTCAAAT 59.363 43.478 0.00 0.00 31.40 2.32
137 138 3.636300 TCAACTCCAACCCAGTTCAAATG 59.364 43.478 0.00 0.00 31.40 2.32
138 139 1.963515 ACTCCAACCCAGTTCAAATGC 59.036 47.619 0.00 0.00 0.00 3.56
139 140 2.242043 CTCCAACCCAGTTCAAATGCT 58.758 47.619 0.00 0.00 0.00 3.79
140 141 2.629617 CTCCAACCCAGTTCAAATGCTT 59.370 45.455 0.00 0.00 0.00 3.91
141 142 2.627699 TCCAACCCAGTTCAAATGCTTC 59.372 45.455 0.00 0.00 0.00 3.86
142 143 2.364970 CCAACCCAGTTCAAATGCTTCA 59.635 45.455 0.00 0.00 0.00 3.02
143 144 3.181467 CCAACCCAGTTCAAATGCTTCAA 60.181 43.478 0.00 0.00 0.00 2.69
144 145 4.503643 CCAACCCAGTTCAAATGCTTCAAT 60.504 41.667 0.00 0.00 0.00 2.57
145 146 4.961438 ACCCAGTTCAAATGCTTCAATT 57.039 36.364 0.00 0.00 0.00 2.32
146 147 4.886579 ACCCAGTTCAAATGCTTCAATTC 58.113 39.130 0.00 0.00 0.00 2.17
147 148 3.922240 CCCAGTTCAAATGCTTCAATTCG 59.078 43.478 0.00 0.00 0.00 3.34
148 149 4.321156 CCCAGTTCAAATGCTTCAATTCGA 60.321 41.667 0.00 0.00 0.00 3.71
149 150 4.618489 CCAGTTCAAATGCTTCAATTCGAC 59.382 41.667 0.00 0.00 0.00 4.20
150 151 5.214417 CAGTTCAAATGCTTCAATTCGACA 58.786 37.500 0.00 0.00 0.00 4.35
151 152 5.860182 CAGTTCAAATGCTTCAATTCGACAT 59.140 36.000 0.00 0.00 0.00 3.06
152 153 6.033196 CAGTTCAAATGCTTCAATTCGACATC 59.967 38.462 0.00 0.00 0.00 3.06
153 154 4.650985 TCAAATGCTTCAATTCGACATCG 58.349 39.130 0.00 0.00 41.45 3.84
154 155 2.744787 ATGCTTCAATTCGACATCGC 57.255 45.000 0.00 0.00 39.60 4.58
155 156 1.437625 TGCTTCAATTCGACATCGCA 58.562 45.000 0.00 0.00 39.60 5.10
156 157 2.009051 TGCTTCAATTCGACATCGCAT 58.991 42.857 0.00 0.00 39.60 4.73
157 158 2.419673 TGCTTCAATTCGACATCGCATT 59.580 40.909 0.00 0.00 35.74 3.56
158 159 3.119884 TGCTTCAATTCGACATCGCATTT 60.120 39.130 0.00 0.00 33.28 2.32
159 160 3.853671 GCTTCAATTCGACATCGCATTTT 59.146 39.130 0.00 0.00 33.28 1.82
160 161 4.028187 GCTTCAATTCGACATCGCATTTTC 60.028 41.667 0.00 0.00 33.28 2.29
161 162 4.676849 TCAATTCGACATCGCATTTTCA 57.323 36.364 0.00 0.00 33.28 2.69
162 163 4.650985 TCAATTCGACATCGCATTTTCAG 58.349 39.130 0.00 0.00 33.28 3.02
163 164 3.680642 ATTCGACATCGCATTTTCAGG 57.319 42.857 0.00 0.00 39.60 3.86
164 165 2.093306 TCGACATCGCATTTTCAGGT 57.907 45.000 0.00 0.00 39.60 4.00
165 166 2.422597 TCGACATCGCATTTTCAGGTT 58.577 42.857 0.00 0.00 39.60 3.50
166 167 2.159430 TCGACATCGCATTTTCAGGTTG 59.841 45.455 0.00 0.00 39.60 3.77
167 168 2.095768 CGACATCGCATTTTCAGGTTGT 60.096 45.455 0.00 0.00 0.00 3.32
168 169 3.492313 GACATCGCATTTTCAGGTTGTC 58.508 45.455 0.00 0.00 0.00 3.18
169 170 2.228822 ACATCGCATTTTCAGGTTGTCC 59.771 45.455 0.00 0.00 0.00 4.02
170 171 1.974265 TCGCATTTTCAGGTTGTCCA 58.026 45.000 0.00 0.00 35.89 4.02
171 172 1.606668 TCGCATTTTCAGGTTGTCCAC 59.393 47.619 0.00 0.00 35.89 4.02
172 173 1.608590 CGCATTTTCAGGTTGTCCACT 59.391 47.619 0.00 0.00 35.89 4.00
173 174 2.034558 CGCATTTTCAGGTTGTCCACTT 59.965 45.455 0.00 0.00 35.89 3.16
174 175 3.490761 CGCATTTTCAGGTTGTCCACTTT 60.491 43.478 0.00 0.00 35.89 2.66
175 176 4.051237 GCATTTTCAGGTTGTCCACTTTC 58.949 43.478 0.00 0.00 35.89 2.62
176 177 4.202151 GCATTTTCAGGTTGTCCACTTTCT 60.202 41.667 0.00 0.00 35.89 2.52
177 178 5.523369 CATTTTCAGGTTGTCCACTTTCTC 58.477 41.667 0.00 0.00 35.89 2.87
178 179 2.930826 TCAGGTTGTCCACTTTCTCC 57.069 50.000 0.00 0.00 35.89 3.71
179 180 2.408565 TCAGGTTGTCCACTTTCTCCT 58.591 47.619 0.00 0.00 35.89 3.69
180 181 2.104792 TCAGGTTGTCCACTTTCTCCTG 59.895 50.000 0.00 0.00 41.30 3.86
181 182 1.421646 AGGTTGTCCACTTTCTCCTGG 59.578 52.381 0.00 0.00 35.89 4.45
182 183 1.239347 GTTGTCCACTTTCTCCTGGC 58.761 55.000 0.00 0.00 0.00 4.85
183 184 0.110486 TTGTCCACTTTCTCCTGGCC 59.890 55.000 0.00 0.00 0.00 5.36
184 185 1.059584 TGTCCACTTTCTCCTGGCCA 61.060 55.000 4.71 4.71 0.00 5.36
185 186 0.606673 GTCCACTTTCTCCTGGCCAC 60.607 60.000 0.00 0.00 0.00 5.01
186 187 1.303643 CCACTTTCTCCTGGCCACC 60.304 63.158 0.00 0.00 0.00 4.61
187 188 1.672356 CACTTTCTCCTGGCCACCG 60.672 63.158 0.00 0.00 0.00 4.94
188 189 2.747855 CTTTCTCCTGGCCACCGC 60.748 66.667 0.00 0.00 0.00 5.68
189 190 3.249189 TTTCTCCTGGCCACCGCT 61.249 61.111 0.00 0.00 34.44 5.52
190 191 2.754664 CTTTCTCCTGGCCACCGCTT 62.755 60.000 0.00 0.00 34.44 4.68
191 192 2.748058 TTTCTCCTGGCCACCGCTTC 62.748 60.000 0.00 0.00 34.44 3.86
249 250 3.591835 CTCCGCGCCTCTCCTCTC 61.592 72.222 0.00 0.00 0.00 3.20
250 251 4.426313 TCCGCGCCTCTCCTCTCA 62.426 66.667 0.00 0.00 0.00 3.27
251 252 3.898509 CCGCGCCTCTCCTCTCAG 61.899 72.222 0.00 0.00 0.00 3.35
252 253 4.567385 CGCGCCTCTCCTCTCAGC 62.567 72.222 0.00 0.00 0.00 4.26
253 254 3.146913 GCGCCTCTCCTCTCAGCT 61.147 66.667 0.00 0.00 0.00 4.24
254 255 2.806929 CGCCTCTCCTCTCAGCTG 59.193 66.667 7.63 7.63 0.00 4.24
255 256 2.500646 GCCTCTCCTCTCAGCTGC 59.499 66.667 9.47 0.00 0.00 5.25
256 257 2.059786 GCCTCTCCTCTCAGCTGCT 61.060 63.158 9.47 0.00 0.00 4.24
257 258 2.019897 GCCTCTCCTCTCAGCTGCTC 62.020 65.000 9.47 0.00 0.00 4.26
258 259 1.394266 CCTCTCCTCTCAGCTGCTCC 61.394 65.000 9.47 0.00 0.00 4.70
259 260 0.683828 CTCTCCTCTCAGCTGCTCCA 60.684 60.000 9.47 0.00 0.00 3.86
260 261 0.969917 TCTCCTCTCAGCTGCTCCAC 60.970 60.000 9.47 0.00 0.00 4.02
261 262 2.183811 CCTCTCAGCTGCTCCACG 59.816 66.667 9.47 0.00 0.00 4.94
262 263 2.644212 CCTCTCAGCTGCTCCACGT 61.644 63.158 9.47 0.00 0.00 4.49
263 264 1.291588 CTCTCAGCTGCTCCACGTT 59.708 57.895 9.47 0.00 0.00 3.99
822 823 2.668212 CAAGGGGCGAACTTGCGA 60.668 61.111 2.96 0.00 38.89 5.10
834 835 3.040414 CTTGCGAGAGACGGAGCGA 62.040 63.158 0.00 0.00 44.01 4.93
839 840 2.673341 AGAGACGGAGCGACTGCA 60.673 61.111 0.00 0.00 46.23 4.41
840 841 2.505118 GAGACGGAGCGACTGCAC 60.505 66.667 0.00 0.00 46.23 4.57
912 923 1.106285 CCCTCTTATTGCAGGCAACC 58.894 55.000 9.13 0.00 38.88 3.77
930 941 1.007964 CGACGGCATCTAGGCAGAG 60.008 63.158 0.00 0.00 44.47 3.35
992 1006 0.457851 CCTCGATCTCGCCTGAACTT 59.542 55.000 0.00 0.00 39.60 2.66
1033 1047 2.508663 GGTCGTACGGCAAGCTCC 60.509 66.667 22.92 0.00 0.00 4.70
1098 1112 2.434359 CGCGAGGTTGGTTCCCTC 60.434 66.667 0.00 0.00 44.24 4.30
1119 1158 2.151202 CCGCCTAGTGAAAAAGCTTCA 58.849 47.619 0.00 0.00 0.00 3.02
1125 1164 1.039856 GTGAAAAAGCTTCAGGCCCA 58.960 50.000 0.00 0.00 43.05 5.36
1142 1181 1.212751 CACGCCGTGAGTCAGATCA 59.787 57.895 12.85 0.00 35.23 2.92
1147 1186 1.737363 GCCGTGAGTCAGATCAGTTCC 60.737 57.143 0.00 0.00 0.00 3.62
1163 1203 3.937706 CAGTTCCTCTTATGTGCTCTTGG 59.062 47.826 0.00 0.00 0.00 3.61
1172 1212 6.899089 TCTTATGTGCTCTTGGGATGAATTA 58.101 36.000 0.00 0.00 0.00 1.40
1222 1262 5.360714 GGATCTTAACAATGCTTTCCCATCA 59.639 40.000 0.00 0.00 0.00 3.07
1228 1268 4.091549 ACAATGCTTTCCCATCATTCACT 58.908 39.130 0.00 0.00 0.00 3.41
1231 1271 3.972133 TGCTTTCCCATCATTCACTGAT 58.028 40.909 0.00 0.00 45.78 2.90
1288 1328 4.437682 TGTGAGTGTTCCAATCTTTCCT 57.562 40.909 0.00 0.00 29.32 3.36
1293 1333 4.646572 AGTGTTCCAATCTTTCCTCAGTC 58.353 43.478 0.00 0.00 0.00 3.51
1314 1354 5.246203 AGTCCACAGTTACTGCTAAATCTCA 59.754 40.000 12.80 0.00 34.37 3.27
1319 1359 7.239271 CACAGTTACTGCTAAATCTCACAATG 58.761 38.462 12.80 0.00 34.37 2.82
1339 1379 1.448069 TTGCCCTACGTGCAACTCA 59.552 52.632 7.62 0.00 43.36 3.41
1340 1380 0.179043 TTGCCCTACGTGCAACTCAA 60.179 50.000 7.62 0.00 43.36 3.02
1343 1383 2.093181 TGCCCTACGTGCAACTCAATAT 60.093 45.455 0.00 0.00 35.40 1.28
1347 1387 1.819928 ACGTGCAACTCAATATGCCA 58.180 45.000 0.00 0.00 41.87 4.92
1373 1413 9.912634 ATTAAAAGTTTGGATTGTGTATCTGTG 57.087 29.630 0.00 0.00 33.53 3.66
1380 1420 6.053632 TGGATTGTGTATCTGTGTCTGAAT 57.946 37.500 0.00 0.00 33.53 2.57
1381 1421 5.876460 TGGATTGTGTATCTGTGTCTGAATG 59.124 40.000 0.00 0.00 33.53 2.67
1382 1422 5.877012 GGATTGTGTATCTGTGTCTGAATGT 59.123 40.000 0.00 0.00 33.53 2.71
1384 1424 7.223582 GGATTGTGTATCTGTGTCTGAATGTAG 59.776 40.741 0.00 0.00 33.53 2.74
1386 1426 5.185828 TGTGTATCTGTGTCTGAATGTAGCT 59.814 40.000 0.00 0.00 0.00 3.32
1491 1532 2.820197 CCCAAGCTGGTTTCTACTTTCC 59.180 50.000 0.00 0.00 35.17 3.13
1508 1549 9.494271 TCTACTTTCCAGTATGATGCAAATATC 57.506 33.333 0.00 0.00 39.69 1.63
1524 1565 5.009410 GCAAATATCTAAGGCTGCACTGAAT 59.991 40.000 0.50 0.00 0.00 2.57
1906 1955 4.104086 TCTGCTCTCCTTTGATCCCTTTA 58.896 43.478 0.00 0.00 0.00 1.85
2146 2196 7.631368 GCGACGAAATAGAAGTAATTTCTTGAC 59.369 37.037 1.62 0.00 43.68 3.18
2158 2208 8.567285 AGTAATTTCTTGACCAATACTTCCTG 57.433 34.615 0.00 0.00 0.00 3.86
2185 2235 3.691118 TGCTGATAGATTTTGAGCACACC 59.309 43.478 0.00 0.00 34.78 4.16
2207 2257 1.667236 TGGGCTCAACATAATCAGCG 58.333 50.000 0.00 0.00 32.26 5.18
2236 2286 0.238817 TTAACACCCGCGACAAATGC 59.761 50.000 8.23 0.00 0.00 3.56
2328 2378 5.765182 CCTTGACAAGGTAGATCAGTTTGTT 59.235 40.000 23.92 0.00 43.95 2.83
2349 2399 5.652014 TGTTGAAGAACAAACTCTGGATGTT 59.348 36.000 0.00 0.00 39.20 2.71
2383 2433 7.649306 CAGACAAGTATGAACTTTTTCCTTTGG 59.351 37.037 0.00 0.00 43.60 3.28
2468 2520 3.096852 TCATACGGTATGGATAGGCTGG 58.903 50.000 23.89 0.00 36.81 4.85
2469 2521 1.933021 TACGGTATGGATAGGCTGGG 58.067 55.000 0.00 0.00 0.00 4.45
2501 2553 2.260844 TTGCAGTGGAGGTTCTCTTG 57.739 50.000 0.00 0.00 0.00 3.02
2560 2613 7.650903 GCATGAATATGTTCTTTCTGGAAATCC 59.349 37.037 0.00 0.00 36.65 3.01
2577 2630 0.473755 TCCAGCACAGCTTTCCTTGA 59.526 50.000 0.00 0.00 36.40 3.02
2578 2631 1.133823 TCCAGCACAGCTTTCCTTGAA 60.134 47.619 0.00 0.00 36.40 2.69
2581 2634 3.507233 CCAGCACAGCTTTCCTTGAATTA 59.493 43.478 0.00 0.00 36.40 1.40
2588 2641 6.810182 CACAGCTTTCCTTGAATTATCCTTTG 59.190 38.462 0.00 0.00 0.00 2.77
2594 2647 5.509498 TCCTTGAATTATCCTTTGTCCAGG 58.491 41.667 0.00 0.00 34.86 4.45
2603 2656 2.514582 TCCTTTGTCCAGGGTTAACCAA 59.485 45.455 25.71 7.81 43.89 3.67
2619 2672 6.263617 GGTTAACCAAATACAGTTCACTTGGA 59.736 38.462 20.12 0.00 39.12 3.53
2629 2682 4.276926 ACAGTTCACTTGGAATGAAAGCTC 59.723 41.667 0.00 0.00 37.80 4.09
2677 2730 7.465353 TGCATAATGATGTTCTTTCTGGAAA 57.535 32.000 0.00 0.00 35.30 3.13
2685 2738 5.186996 TGTTCTTTCTGGAAATTCAGCAC 57.813 39.130 0.00 0.00 34.91 4.40
2687 2740 5.302568 TGTTCTTTCTGGAAATTCAGCACAT 59.697 36.000 0.00 0.00 34.91 3.21
2701 2754 7.884816 ATTCAGCACATCTTTTCTTGAATTG 57.115 32.000 0.00 0.00 0.00 2.32
2720 2773 7.958674 TGAATTGTTGCTGTTTGTTAAAAGTC 58.041 30.769 0.00 0.00 0.00 3.01
2724 2777 5.861251 TGTTGCTGTTTGTTAAAAGTCACAG 59.139 36.000 0.00 0.00 0.00 3.66
2756 2809 6.594284 TTATTTGAGATGACAGCTCATTCG 57.406 37.500 23.14 0.00 41.60 3.34
2760 2813 5.072040 TGAGATGACAGCTCATTCGTTTA 57.928 39.130 19.16 0.00 37.24 2.01
2823 2876 5.645497 AGGAGAAGAAGGATGAAATTGAACG 59.355 40.000 0.00 0.00 0.00 3.95
2867 2920 7.718753 AGAAGGTATTATCCATCTGAAAAGCAG 59.281 37.037 0.00 0.00 46.31 4.24
2939 2992 4.683129 GCCCTGTGGTTGAGTTTTGAATTT 60.683 41.667 0.00 0.00 0.00 1.82
2945 3000 7.158021 TGTGGTTGAGTTTTGAATTTGTCTTT 58.842 30.769 0.00 0.00 0.00 2.52
3000 3055 3.144657 TCACTCCATTGCTGTCAACAT 57.855 42.857 0.00 0.00 34.60 2.71
3002 3057 2.815503 CACTCCATTGCTGTCAACATGA 59.184 45.455 0.00 0.00 34.60 3.07
3016 3071 7.008628 GCTGTCAACATGATATTTAGTTGCAAC 59.991 37.037 22.17 22.17 40.71 4.17
3017 3072 7.880105 TGTCAACATGATATTTAGTTGCAACA 58.120 30.769 30.11 14.17 40.71 3.33
3018 3073 8.522003 TGTCAACATGATATTTAGTTGCAACAT 58.478 29.630 30.11 17.65 40.71 2.71
3024 3079 9.236691 CATGATATTTAGTTGCAACATGTTACC 57.763 33.333 30.11 14.65 32.26 2.85
3069 3135 9.432077 CAAAAACAAAATTTATGGTGCTGTTAC 57.568 29.630 3.33 0.00 0.00 2.50
3075 3141 3.417069 TTATGGTGCTGTTACTGCTGT 57.583 42.857 14.81 0.66 0.00 4.40
3091 3157 4.937620 ACTGCTGTAAGTGTTACATGATGG 59.062 41.667 0.00 0.00 44.46 3.51
3108 3174 0.321298 TGGTCACCTTAAGAAGCGCC 60.321 55.000 2.29 0.47 0.00 6.53
3128 3194 3.342269 CCGACAACGCAATTTATCTTCG 58.658 45.455 0.00 0.00 38.29 3.79
3316 3383 6.094186 GTGCTTTCTTCTTATTACCCTTCCTG 59.906 42.308 0.00 0.00 0.00 3.86
3321 3388 7.996098 TCTTCTTATTACCCTTCCTGTTTTG 57.004 36.000 0.00 0.00 0.00 2.44
3332 3399 5.183904 CCCTTCCTGTTTTGATTCGATTTCT 59.816 40.000 0.00 0.00 0.00 2.52
3356 3423 2.122564 GACTTGTTTTGCAGCTGAAGC 58.877 47.619 20.43 6.47 42.49 3.86
3370 3437 2.793933 CTGAAGCAATGGAATTCTGCG 58.206 47.619 11.26 0.00 31.22 5.18
3383 3450 1.502190 TCTGCGTGTCAGAGCTACG 59.498 57.895 1.59 1.59 46.34 3.51
3406 3473 2.289882 TGACCATTGAGCTTCTCTGGTG 60.290 50.000 13.80 1.40 38.56 4.17
3407 3474 1.004044 ACCATTGAGCTTCTCTGGTGG 59.996 52.381 9.56 8.31 37.56 4.61
3408 3475 1.280133 CCATTGAGCTTCTCTGGTGGA 59.720 52.381 0.00 0.00 32.81 4.02
3409 3476 2.290514 CCATTGAGCTTCTCTGGTGGAA 60.291 50.000 0.00 0.00 32.81 3.53
3515 3590 4.094294 TGCTAACCAATTGTAGCGTGATTC 59.906 41.667 18.14 0.00 38.31 2.52
3559 3634 4.932146 AGCTGTTGCGTTTCTGTATTTTT 58.068 34.783 0.00 0.00 45.42 1.94
3585 3661 1.707989 TCCTGTTTCCTGCACCCATAA 59.292 47.619 0.00 0.00 0.00 1.90
3632 3708 2.915604 AGATGACACTCCTGGTTCCATT 59.084 45.455 0.00 0.00 0.00 3.16
3657 3733 5.901552 TCTCCCTTGACATTTGTTTTTCAC 58.098 37.500 0.00 0.00 0.00 3.18
3675 3753 4.764050 TCACTTTGGTGTCCAAGTCTTA 57.236 40.909 1.53 0.00 44.84 2.10
3685 3763 7.004086 TGGTGTCCAAGTCTTAATGAGAAAAT 58.996 34.615 0.00 0.00 35.79 1.82
3725 3804 5.737063 GCATGTATTCCCCAAATTACTGCAG 60.737 44.000 13.48 13.48 0.00 4.41
3734 3813 8.041143 TCCCCAAATTACTGCAGTTATATACT 57.959 34.615 27.06 3.08 37.68 2.12
3735 3814 8.154856 TCCCCAAATTACTGCAGTTATATACTC 58.845 37.037 27.06 0.00 33.85 2.59
3736 3815 7.390718 CCCCAAATTACTGCAGTTATATACTCC 59.609 40.741 27.06 0.00 33.85 3.85
3737 3816 7.390718 CCCAAATTACTGCAGTTATATACTCCC 59.609 40.741 27.06 0.00 33.85 4.30
3738 3817 8.157476 CCAAATTACTGCAGTTATATACTCCCT 58.843 37.037 27.06 0.28 33.85 4.20
3739 3818 9.209175 CAAATTACTGCAGTTATATACTCCCTC 57.791 37.037 27.06 0.00 33.85 4.30
3740 3819 8.728596 AATTACTGCAGTTATATACTCCCTCT 57.271 34.615 27.06 0.00 33.85 3.69
3741 3820 7.526142 TTACTGCAGTTATATACTCCCTCTG 57.474 40.000 27.06 0.00 33.85 3.35
3742 3821 5.459505 ACTGCAGTTATATACTCCCTCTGT 58.540 41.667 15.25 0.00 33.85 3.41
3743 3822 6.611785 ACTGCAGTTATATACTCCCTCTGTA 58.388 40.000 15.25 0.00 33.85 2.74
3744 3823 7.067421 ACTGCAGTTATATACTCCCTCTGTAA 58.933 38.462 15.25 0.00 33.85 2.41
3745 3824 7.563924 ACTGCAGTTATATACTCCCTCTGTAAA 59.436 37.037 15.25 0.00 33.85 2.01
3746 3825 8.313944 TGCAGTTATATACTCCCTCTGTAAAA 57.686 34.615 0.00 0.00 33.85 1.52
3747 3826 8.764558 TGCAGTTATATACTCCCTCTGTAAAAA 58.235 33.333 0.00 0.00 33.85 1.94
3811 3890 9.892130 AACACTTATATTTCTTTACTGAGGGAG 57.108 33.333 0.00 0.00 0.00 4.30
3812 3891 9.047947 ACACTTATATTTCTTTACTGAGGGAGT 57.952 33.333 0.00 0.00 38.88 3.85
3826 3905 4.689062 TGAGGGAGTAGAAGGAAATCTGT 58.311 43.478 0.00 0.00 0.00 3.41
3875 3954 8.681486 TTTGATTCTGAAGTTGAAATCTCAGA 57.319 30.769 0.00 0.00 31.69 3.27
3886 3966 1.366319 AATCTCAGAGGGGTTGCTGT 58.634 50.000 0.00 0.00 33.90 4.40
3905 3986 2.224185 TGTAACACCCATAGCATAGCCG 60.224 50.000 0.00 0.00 0.00 5.52
3915 3996 4.503296 CCATAGCATAGCCGTTTTACCTCT 60.503 45.833 0.00 0.00 0.00 3.69
3916 3997 3.629142 AGCATAGCCGTTTTACCTCTT 57.371 42.857 0.00 0.00 0.00 2.85
3917 3998 3.532542 AGCATAGCCGTTTTACCTCTTC 58.467 45.455 0.00 0.00 0.00 2.87
3918 3999 3.197983 AGCATAGCCGTTTTACCTCTTCT 59.802 43.478 0.00 0.00 0.00 2.85
3919 4000 3.939592 GCATAGCCGTTTTACCTCTTCTT 59.060 43.478 0.00 0.00 0.00 2.52
3920 4001 4.034163 GCATAGCCGTTTTACCTCTTCTTC 59.966 45.833 0.00 0.00 0.00 2.87
3921 4002 5.420409 CATAGCCGTTTTACCTCTTCTTCT 58.580 41.667 0.00 0.00 0.00 2.85
3922 4003 4.353383 AGCCGTTTTACCTCTTCTTCTT 57.647 40.909 0.00 0.00 0.00 2.52
3923 4004 4.316645 AGCCGTTTTACCTCTTCTTCTTC 58.683 43.478 0.00 0.00 0.00 2.87
3924 4005 4.040584 AGCCGTTTTACCTCTTCTTCTTCT 59.959 41.667 0.00 0.00 0.00 2.85
3925 4006 4.755629 GCCGTTTTACCTCTTCTTCTTCTT 59.244 41.667 0.00 0.00 0.00 2.52
3926 4007 5.107026 GCCGTTTTACCTCTTCTTCTTCTTC 60.107 44.000 0.00 0.00 0.00 2.87
3927 4008 6.224584 CCGTTTTACCTCTTCTTCTTCTTCT 58.775 40.000 0.00 0.00 0.00 2.85
3928 4009 6.706716 CCGTTTTACCTCTTCTTCTTCTTCTT 59.293 38.462 0.00 0.00 0.00 2.52
3929 4010 7.095565 CCGTTTTACCTCTTCTTCTTCTTCTTC 60.096 40.741 0.00 0.00 0.00 2.87
3930 4011 7.438459 CGTTTTACCTCTTCTTCTTCTTCTTCA 59.562 37.037 0.00 0.00 0.00 3.02
3989 4076 3.888930 CCAGTTGTTGCCTCCTTTTCTTA 59.111 43.478 0.00 0.00 0.00 2.10
3991 4078 4.022849 CAGTTGTTGCCTCCTTTTCTTAGG 60.023 45.833 0.00 0.00 36.59 2.69
4016 4103 7.709613 GGGAAAAATTTCTGATCTGAATCATGG 59.290 37.037 14.89 0.00 41.05 3.66
4028 4115 5.065914 TCTGAATCATGGCATAGGTTTAGC 58.934 41.667 0.00 0.00 0.00 3.09
4033 4120 2.332063 TGGCATAGGTTTAGCTGCTC 57.668 50.000 4.91 0.00 35.03 4.26
4039 4128 4.262635 GCATAGGTTTAGCTGCTCCTGATA 60.263 45.833 16.30 3.13 0.00 2.15
4041 4130 4.348863 AGGTTTAGCTGCTCCTGATATG 57.651 45.455 4.91 0.00 0.00 1.78
4049 4138 3.675775 GCTGCTCCTGATATGCTACTAGC 60.676 52.174 0.61 0.61 42.82 3.42
4084 4173 2.789409 ACATACAAGGAACAGCTCCC 57.211 50.000 0.00 0.00 46.81 4.30
4088 4177 1.122019 ACAAGGAACAGCTCCCTCGT 61.122 55.000 0.00 0.00 46.81 4.18
4132 4221 3.753272 TGAACTTACAGAAGGATTGCAGC 59.247 43.478 0.00 0.00 36.95 5.25
4136 4225 2.706339 ACAGAAGGATTGCAGCTAGG 57.294 50.000 0.00 0.00 0.00 3.02
4137 4226 1.211457 ACAGAAGGATTGCAGCTAGGG 59.789 52.381 0.00 0.00 0.00 3.53
4166 4256 6.374053 GGATTAAAATTGGTTGGTTTGGGATG 59.626 38.462 0.00 0.00 0.00 3.51
4192 4282 1.841556 GGTGGGGTGTGGAGTCTGA 60.842 63.158 0.00 0.00 0.00 3.27
4246 4342 3.079578 CAAGCAGCTTCTTTGGAGATGA 58.920 45.455 4.07 0.00 30.64 2.92
4253 4349 5.002516 AGCTTCTTTGGAGATGAAACTCTG 58.997 41.667 0.00 0.00 37.13 3.35
4285 4381 0.467290 GCTGGGGTTCACCAAGACAA 60.467 55.000 0.00 0.00 43.78 3.18
4299 4395 2.564062 CAAGACAACCATCCAGGCAAAT 59.436 45.455 0.00 0.00 43.14 2.32
4316 4412 4.762251 GGCAAATCCAGACTCTGTTTACTT 59.238 41.667 5.32 0.00 34.01 2.24
4319 4415 6.238759 GCAAATCCAGACTCTGTTTACTTTGT 60.239 38.462 5.32 0.00 0.00 2.83
4321 4417 9.003658 CAAATCCAGACTCTGTTTACTTTGTAT 57.996 33.333 5.32 0.00 0.00 2.29
4323 4419 9.877178 AATCCAGACTCTGTTTACTTTGTATAG 57.123 33.333 5.32 0.00 0.00 1.31
4324 4420 8.418597 TCCAGACTCTGTTTACTTTGTATAGT 57.581 34.615 5.32 0.00 0.00 2.12
4325 4421 9.524496 TCCAGACTCTGTTTACTTTGTATAGTA 57.476 33.333 5.32 0.00 0.00 1.82
4332 4438 7.605410 TGTTTACTTTGTATAGTAAGCAGGC 57.395 36.000 8.39 0.00 42.83 4.85
4350 4456 1.497722 CGTTCTCCTCGCCTTTTGC 59.502 57.895 0.00 0.00 0.00 3.68
4367 4473 4.822036 TTTGCGTGCATAGTTAGTTTGT 57.178 36.364 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.638239 ACCTTACAAACGTCGTTATATAGAAAA 57.362 29.630 11.70 0.00 0.00 2.29
11 12 9.638239 AACCTTACAAACGTCGTTATATAGAAA 57.362 29.630 11.70 0.00 0.00 2.52
12 13 9.075519 CAACCTTACAAACGTCGTTATATAGAA 57.924 33.333 11.70 0.15 0.00 2.10
13 14 7.220683 GCAACCTTACAAACGTCGTTATATAGA 59.779 37.037 11.70 0.00 0.00 1.98
14 15 7.332530 GCAACCTTACAAACGTCGTTATATAG 58.667 38.462 11.70 7.08 0.00 1.31
15 16 6.020758 CGCAACCTTACAAACGTCGTTATATA 60.021 38.462 11.70 1.64 0.00 0.86
16 17 5.220265 CGCAACCTTACAAACGTCGTTATAT 60.220 40.000 11.70 2.62 0.00 0.86
17 18 4.089780 CGCAACCTTACAAACGTCGTTATA 59.910 41.667 11.70 4.55 0.00 0.98
18 19 3.120923 CGCAACCTTACAAACGTCGTTAT 60.121 43.478 11.70 5.57 0.00 1.89
19 20 2.218302 CGCAACCTTACAAACGTCGTTA 59.782 45.455 11.70 0.00 0.00 3.18
20 21 1.004715 CGCAACCTTACAAACGTCGTT 60.005 47.619 4.40 4.40 0.00 3.85
21 22 0.578211 CGCAACCTTACAAACGTCGT 59.422 50.000 0.00 0.00 0.00 4.34
22 23 0.578211 ACGCAACCTTACAAACGTCG 59.422 50.000 0.00 0.00 0.00 5.12
23 24 1.593933 TCACGCAACCTTACAAACGTC 59.406 47.619 0.00 0.00 0.00 4.34
24 25 1.654317 TCACGCAACCTTACAAACGT 58.346 45.000 0.00 0.00 0.00 3.99
25 26 2.635444 CTTCACGCAACCTTACAAACG 58.365 47.619 0.00 0.00 0.00 3.60
26 27 2.032924 AGCTTCACGCAACCTTACAAAC 59.967 45.455 0.00 0.00 42.61 2.93
27 28 2.294074 AGCTTCACGCAACCTTACAAA 58.706 42.857 0.00 0.00 42.61 2.83
28 29 1.961793 AGCTTCACGCAACCTTACAA 58.038 45.000 0.00 0.00 42.61 2.41
29 30 1.961793 AAGCTTCACGCAACCTTACA 58.038 45.000 0.00 0.00 42.61 2.41
30 31 4.083484 ACATTAAGCTTCACGCAACCTTAC 60.083 41.667 0.00 0.00 42.61 2.34
31 32 4.069304 ACATTAAGCTTCACGCAACCTTA 58.931 39.130 0.00 0.00 42.61 2.69
32 33 2.884639 ACATTAAGCTTCACGCAACCTT 59.115 40.909 0.00 0.00 42.61 3.50
33 34 2.504367 ACATTAAGCTTCACGCAACCT 58.496 42.857 0.00 0.00 42.61 3.50
34 35 2.989422 ACATTAAGCTTCACGCAACC 57.011 45.000 0.00 0.00 42.61 3.77
35 36 4.142687 ACCATACATTAAGCTTCACGCAAC 60.143 41.667 0.00 0.00 42.61 4.17
36 37 4.006989 ACCATACATTAAGCTTCACGCAA 58.993 39.130 0.00 0.00 42.61 4.85
37 38 3.605634 ACCATACATTAAGCTTCACGCA 58.394 40.909 0.00 0.00 42.61 5.24
38 39 3.871594 AGACCATACATTAAGCTTCACGC 59.128 43.478 0.00 0.00 39.57 5.34
39 40 6.292381 GCTAAGACCATACATTAAGCTTCACG 60.292 42.308 0.00 0.00 0.00 4.35
40 41 6.017852 GGCTAAGACCATACATTAAGCTTCAC 60.018 42.308 0.00 0.00 0.00 3.18
41 42 6.055588 GGCTAAGACCATACATTAAGCTTCA 58.944 40.000 0.00 0.00 0.00 3.02
42 43 5.470437 GGGCTAAGACCATACATTAAGCTTC 59.530 44.000 0.00 0.00 0.00 3.86
43 44 5.132816 AGGGCTAAGACCATACATTAAGCTT 59.867 40.000 3.48 3.48 29.21 3.74
44 45 4.660771 AGGGCTAAGACCATACATTAAGCT 59.339 41.667 0.00 0.00 29.21 3.74
45 46 4.974399 AGGGCTAAGACCATACATTAAGC 58.026 43.478 0.00 0.00 29.21 3.09
46 47 7.881775 AAAAGGGCTAAGACCATACATTAAG 57.118 36.000 0.00 0.00 29.21 1.85
47 48 7.066525 CGAAAAAGGGCTAAGACCATACATTAA 59.933 37.037 0.00 0.00 29.21 1.40
48 49 6.540914 CGAAAAAGGGCTAAGACCATACATTA 59.459 38.462 0.00 0.00 29.21 1.90
49 50 5.357032 CGAAAAAGGGCTAAGACCATACATT 59.643 40.000 0.00 0.00 29.21 2.71
50 51 4.881850 CGAAAAAGGGCTAAGACCATACAT 59.118 41.667 0.00 0.00 29.21 2.29
51 52 4.258543 CGAAAAAGGGCTAAGACCATACA 58.741 43.478 0.00 0.00 29.21 2.29
52 53 3.064958 GCGAAAAAGGGCTAAGACCATAC 59.935 47.826 0.00 0.00 29.21 2.39
53 54 3.275999 GCGAAAAAGGGCTAAGACCATA 58.724 45.455 0.00 0.00 29.21 2.74
54 55 2.092323 GCGAAAAAGGGCTAAGACCAT 58.908 47.619 0.00 0.00 29.21 3.55
55 56 1.202830 TGCGAAAAAGGGCTAAGACCA 60.203 47.619 0.00 0.00 29.21 4.02
56 57 1.530323 TGCGAAAAAGGGCTAAGACC 58.470 50.000 0.00 0.00 0.00 3.85
57 58 3.850122 ATTGCGAAAAAGGGCTAAGAC 57.150 42.857 0.00 0.00 0.00 3.01
58 59 5.250200 TCTTATTGCGAAAAAGGGCTAAGA 58.750 37.500 0.00 0.00 0.00 2.10
59 60 5.560966 TCTTATTGCGAAAAAGGGCTAAG 57.439 39.130 0.00 0.00 0.00 2.18
60 61 5.968528 TTCTTATTGCGAAAAAGGGCTAA 57.031 34.783 0.00 0.00 0.00 3.09
61 62 6.524101 AATTCTTATTGCGAAAAAGGGCTA 57.476 33.333 0.00 0.00 0.00 3.93
62 63 5.405935 AATTCTTATTGCGAAAAAGGGCT 57.594 34.783 0.00 0.00 0.00 5.19
63 64 7.589574 TTTAATTCTTATTGCGAAAAAGGGC 57.410 32.000 0.00 0.00 0.00 5.19
100 101 7.979537 GGTTGGAGTTGACAACTTTTAAAGAAT 59.020 33.333 21.42 0.00 45.61 2.40
101 102 7.317390 GGTTGGAGTTGACAACTTTTAAAGAA 58.683 34.615 21.42 5.24 45.61 2.52
102 103 6.127563 GGGTTGGAGTTGACAACTTTTAAAGA 60.128 38.462 21.42 2.59 45.61 2.52
103 104 6.040247 GGGTTGGAGTTGACAACTTTTAAAG 58.960 40.000 21.42 2.81 45.61 1.85
104 105 5.480772 TGGGTTGGAGTTGACAACTTTTAAA 59.519 36.000 21.42 10.97 45.61 1.52
105 106 5.017490 TGGGTTGGAGTTGACAACTTTTAA 58.983 37.500 21.42 13.68 45.61 1.52
106 107 4.601084 TGGGTTGGAGTTGACAACTTTTA 58.399 39.130 21.42 8.80 45.61 1.52
107 108 3.436243 TGGGTTGGAGTTGACAACTTTT 58.564 40.909 21.42 0.00 45.61 2.27
108 109 3.023832 CTGGGTTGGAGTTGACAACTTT 58.976 45.455 21.42 0.71 45.61 2.66
109 110 2.025321 ACTGGGTTGGAGTTGACAACTT 60.025 45.455 21.42 6.17 45.61 2.66
110 111 1.564348 ACTGGGTTGGAGTTGACAACT 59.436 47.619 20.70 20.70 45.61 3.16
111 112 2.052782 ACTGGGTTGGAGTTGACAAC 57.947 50.000 10.47 10.47 45.60 3.32
112 113 2.025793 TGAACTGGGTTGGAGTTGACAA 60.026 45.455 0.00 0.00 33.71 3.18
113 114 1.562008 TGAACTGGGTTGGAGTTGACA 59.438 47.619 0.00 0.00 33.71 3.58
114 115 2.341846 TGAACTGGGTTGGAGTTGAC 57.658 50.000 0.00 0.00 33.71 3.18
115 116 3.374042 TTTGAACTGGGTTGGAGTTGA 57.626 42.857 0.00 0.00 33.71 3.18
116 117 3.799917 GCATTTGAACTGGGTTGGAGTTG 60.800 47.826 0.00 0.00 33.71 3.16
117 118 2.365293 GCATTTGAACTGGGTTGGAGTT 59.635 45.455 0.00 0.00 36.33 3.01
118 119 1.963515 GCATTTGAACTGGGTTGGAGT 59.036 47.619 0.00 0.00 0.00 3.85
119 120 2.242043 AGCATTTGAACTGGGTTGGAG 58.758 47.619 0.00 0.00 0.00 3.86
120 121 2.380064 AGCATTTGAACTGGGTTGGA 57.620 45.000 0.00 0.00 0.00 3.53
121 122 2.364970 TGAAGCATTTGAACTGGGTTGG 59.635 45.455 0.00 0.00 0.00 3.77
122 123 3.731652 TGAAGCATTTGAACTGGGTTG 57.268 42.857 0.00 0.00 0.00 3.77
123 124 4.961438 ATTGAAGCATTTGAACTGGGTT 57.039 36.364 0.00 0.00 0.00 4.11
124 125 4.559300 CGAATTGAAGCATTTGAACTGGGT 60.559 41.667 0.00 0.00 0.00 4.51
125 126 3.922240 CGAATTGAAGCATTTGAACTGGG 59.078 43.478 0.00 0.00 0.00 4.45
126 127 4.618489 GTCGAATTGAAGCATTTGAACTGG 59.382 41.667 0.00 0.00 0.00 4.00
127 128 5.214417 TGTCGAATTGAAGCATTTGAACTG 58.786 37.500 0.00 0.00 0.00 3.16
128 129 5.437289 TGTCGAATTGAAGCATTTGAACT 57.563 34.783 0.00 0.00 0.00 3.01
129 130 5.002840 CGATGTCGAATTGAAGCATTTGAAC 59.997 40.000 0.00 0.00 43.02 3.18
130 131 5.088068 CGATGTCGAATTGAAGCATTTGAA 58.912 37.500 0.00 0.00 43.02 2.69
131 132 4.650985 CGATGTCGAATTGAAGCATTTGA 58.349 39.130 0.00 0.00 43.02 2.69
132 133 3.239026 GCGATGTCGAATTGAAGCATTTG 59.761 43.478 6.60 0.00 43.02 2.32
133 134 3.119884 TGCGATGTCGAATTGAAGCATTT 60.120 39.130 6.60 0.00 43.02 2.32
134 135 2.419673 TGCGATGTCGAATTGAAGCATT 59.580 40.909 6.60 0.00 43.02 3.56
135 136 2.009051 TGCGATGTCGAATTGAAGCAT 58.991 42.857 6.60 0.00 43.02 3.79
136 137 1.437625 TGCGATGTCGAATTGAAGCA 58.562 45.000 6.60 0.00 43.02 3.91
137 138 2.744787 ATGCGATGTCGAATTGAAGC 57.255 45.000 6.60 0.00 43.02 3.86
138 139 5.088068 TGAAAATGCGATGTCGAATTGAAG 58.912 37.500 9.25 0.00 46.17 3.02
139 140 5.040715 TGAAAATGCGATGTCGAATTGAA 57.959 34.783 9.25 0.00 46.17 2.69
140 141 4.437255 CCTGAAAATGCGATGTCGAATTGA 60.437 41.667 9.25 0.00 46.17 2.57
141 142 3.787634 CCTGAAAATGCGATGTCGAATTG 59.212 43.478 9.25 0.00 46.17 2.32
143 144 3.009723 ACCTGAAAATGCGATGTCGAAT 58.990 40.909 6.60 0.00 39.81 3.34
144 145 2.422597 ACCTGAAAATGCGATGTCGAA 58.577 42.857 6.60 0.00 43.02 3.71
145 146 2.093306 ACCTGAAAATGCGATGTCGA 57.907 45.000 6.60 0.00 43.02 4.20
146 147 2.095768 ACAACCTGAAAATGCGATGTCG 60.096 45.455 0.00 0.00 43.27 4.35
147 148 3.492313 GACAACCTGAAAATGCGATGTC 58.508 45.455 0.00 0.00 0.00 3.06
148 149 2.228822 GGACAACCTGAAAATGCGATGT 59.771 45.455 0.00 0.00 0.00 3.06
149 150 2.228582 TGGACAACCTGAAAATGCGATG 59.771 45.455 0.00 0.00 37.04 3.84
150 151 2.228822 GTGGACAACCTGAAAATGCGAT 59.771 45.455 0.00 0.00 37.04 4.58
151 152 1.606668 GTGGACAACCTGAAAATGCGA 59.393 47.619 0.00 0.00 37.04 5.10
152 153 1.608590 AGTGGACAACCTGAAAATGCG 59.391 47.619 0.00 0.00 37.04 4.73
153 154 3.733443 AAGTGGACAACCTGAAAATGC 57.267 42.857 0.00 0.00 37.04 3.56
154 155 5.507985 GGAGAAAGTGGACAACCTGAAAATG 60.508 44.000 0.00 0.00 37.04 2.32
155 156 4.584743 GGAGAAAGTGGACAACCTGAAAAT 59.415 41.667 0.00 0.00 37.04 1.82
156 157 3.951680 GGAGAAAGTGGACAACCTGAAAA 59.048 43.478 0.00 0.00 37.04 2.29
157 158 3.202151 AGGAGAAAGTGGACAACCTGAAA 59.798 43.478 0.00 0.00 37.04 2.69
158 159 2.777692 AGGAGAAAGTGGACAACCTGAA 59.222 45.455 0.00 0.00 37.04 3.02
159 160 2.104792 CAGGAGAAAGTGGACAACCTGA 59.895 50.000 0.00 0.00 43.91 3.86
160 161 2.498167 CAGGAGAAAGTGGACAACCTG 58.502 52.381 0.00 0.00 37.63 4.00
161 162 1.421646 CCAGGAGAAAGTGGACAACCT 59.578 52.381 0.00 0.00 35.67 3.50
162 163 1.897560 CCAGGAGAAAGTGGACAACC 58.102 55.000 0.00 0.00 35.67 3.77
163 164 1.239347 GCCAGGAGAAAGTGGACAAC 58.761 55.000 0.00 0.00 35.67 3.32
164 165 0.110486 GGCCAGGAGAAAGTGGACAA 59.890 55.000 0.00 0.00 42.12 3.18
165 166 1.761174 GGCCAGGAGAAAGTGGACA 59.239 57.895 0.00 0.00 42.12 4.02
166 167 0.606673 GTGGCCAGGAGAAAGTGGAC 60.607 60.000 5.11 0.00 42.97 4.02
167 168 1.761174 GTGGCCAGGAGAAAGTGGA 59.239 57.895 5.11 0.00 35.67 4.02
168 169 1.303643 GGTGGCCAGGAGAAAGTGG 60.304 63.158 5.11 0.00 36.85 4.00
169 170 1.672356 CGGTGGCCAGGAGAAAGTG 60.672 63.158 5.11 0.00 0.00 3.16
170 171 2.750350 CGGTGGCCAGGAGAAAGT 59.250 61.111 5.11 0.00 0.00 2.66
171 172 2.747855 GCGGTGGCCAGGAGAAAG 60.748 66.667 5.11 0.00 0.00 2.62
172 173 2.748058 GAAGCGGTGGCCAGGAGAAA 62.748 60.000 5.11 0.00 41.24 2.52
173 174 3.249189 AAGCGGTGGCCAGGAGAA 61.249 61.111 5.11 0.00 41.24 2.87
174 175 3.706373 GAAGCGGTGGCCAGGAGA 61.706 66.667 5.11 0.00 41.24 3.71
232 233 3.591835 GAGAGGAGAGGCGCGGAG 61.592 72.222 8.83 0.00 0.00 4.63
233 234 4.426313 TGAGAGGAGAGGCGCGGA 62.426 66.667 8.83 0.00 0.00 5.54
234 235 3.898509 CTGAGAGGAGAGGCGCGG 61.899 72.222 8.83 0.00 0.00 6.46
235 236 4.567385 GCTGAGAGGAGAGGCGCG 62.567 72.222 0.00 0.00 0.00 6.86
236 237 3.146913 AGCTGAGAGGAGAGGCGC 61.147 66.667 0.00 0.00 0.00 6.53
237 238 2.806929 CAGCTGAGAGGAGAGGCG 59.193 66.667 8.42 0.00 0.00 5.52
238 239 2.019897 GAGCAGCTGAGAGGAGAGGC 62.020 65.000 20.43 0.00 0.00 4.70
239 240 1.394266 GGAGCAGCTGAGAGGAGAGG 61.394 65.000 20.43 0.00 0.00 3.69
240 241 0.683828 TGGAGCAGCTGAGAGGAGAG 60.684 60.000 20.43 0.00 0.00 3.20
241 242 0.969917 GTGGAGCAGCTGAGAGGAGA 60.970 60.000 20.43 0.00 0.00 3.71
242 243 1.516892 GTGGAGCAGCTGAGAGGAG 59.483 63.158 20.43 0.00 0.00 3.69
243 244 2.346541 CGTGGAGCAGCTGAGAGGA 61.347 63.158 20.43 0.00 0.00 3.71
244 245 2.164865 AACGTGGAGCAGCTGAGAGG 62.165 60.000 20.43 5.44 0.00 3.69
245 246 1.291588 AACGTGGAGCAGCTGAGAG 59.708 57.895 20.43 4.22 0.00 3.20
246 247 3.459823 AACGTGGAGCAGCTGAGA 58.540 55.556 20.43 0.00 0.00 3.27
822 823 2.673341 TGCAGTCGCTCCGTCTCT 60.673 61.111 0.00 0.00 39.64 3.10
912 923 1.007964 CTCTGCCTAGATGCCGTCG 60.008 63.158 0.00 0.00 31.21 5.12
977 991 1.134560 ACGGTAAGTTCAGGCGAGATC 59.865 52.381 0.00 0.00 0.00 2.75
979 993 0.524862 GACGGTAAGTTCAGGCGAGA 59.475 55.000 0.00 0.00 0.00 4.04
1033 1047 2.669364 GGCAAGCTTGAATGACTTGTG 58.331 47.619 30.39 0.00 42.20 3.33
1098 1112 1.468914 GAAGCTTTTTCACTAGGCGGG 59.531 52.381 0.00 0.00 0.00 6.13
1125 1164 1.244697 ACTGATCTGACTCACGGCGT 61.245 55.000 6.77 6.77 0.00 5.68
1136 1175 5.021033 AGCACATAAGAGGAACTGATCTG 57.979 43.478 0.00 0.00 41.55 2.90
1137 1176 4.961730 AGAGCACATAAGAGGAACTGATCT 59.038 41.667 0.00 0.00 41.55 2.75
1147 1186 4.412796 TCATCCCAAGAGCACATAAGAG 57.587 45.455 0.00 0.00 0.00 2.85
1163 1203 8.197988 AGAATAACACACGAGTTAATTCATCC 57.802 34.615 11.55 0.00 37.50 3.51
1172 1212 4.997395 AGATGCAAGAATAACACACGAGTT 59.003 37.500 0.00 0.00 35.55 3.01
1222 1262 3.618351 CTCCCTTTCAGCATCAGTGAAT 58.382 45.455 0.00 0.00 33.95 2.57
1228 1268 1.746615 GCGCTCCCTTTCAGCATCA 60.747 57.895 0.00 0.00 36.61 3.07
1231 1271 3.640407 AGGCGCTCCCTTTCAGCA 61.640 61.111 7.64 0.00 43.06 4.41
1234 1274 1.295423 GTACAGGCGCTCCCTTTCA 59.705 57.895 7.64 0.00 43.06 2.69
1288 1328 4.948341 TTTAGCAGTAACTGTGGACTGA 57.052 40.909 21.09 4.54 44.88 3.41
1293 1333 5.237815 TGTGAGATTTAGCAGTAACTGTGG 58.762 41.667 0.00 0.00 33.43 4.17
1314 1354 0.596082 GCACGTAGGGCAAACATTGT 59.404 50.000 0.00 0.00 0.00 2.71
1336 1376 9.603921 AATCCAAACTTTTAATGGCATATTGAG 57.396 29.630 0.00 0.00 34.13 3.02
1339 1379 9.165035 CACAATCCAAACTTTTAATGGCATATT 57.835 29.630 0.00 0.00 34.13 1.28
1340 1380 8.320617 ACACAATCCAAACTTTTAATGGCATAT 58.679 29.630 0.00 0.00 34.13 1.78
1343 1383 5.923204 ACACAATCCAAACTTTTAATGGCA 58.077 33.333 0.00 0.00 34.13 4.92
1347 1387 9.912634 CACAGATACACAATCCAAACTTTTAAT 57.087 29.630 0.00 0.00 34.90 1.40
1373 1413 7.316640 TCAGAAGTTAAGAGCTACATTCAGAC 58.683 38.462 0.00 0.00 0.00 3.51
1380 1420 6.842437 ACAGATCAGAAGTTAAGAGCTACA 57.158 37.500 0.00 0.00 0.00 2.74
1381 1421 8.541133 AAAACAGATCAGAAGTTAAGAGCTAC 57.459 34.615 0.00 0.00 0.00 3.58
1382 1422 7.819900 GGAAAACAGATCAGAAGTTAAGAGCTA 59.180 37.037 0.00 0.00 0.00 3.32
1384 1424 6.652900 AGGAAAACAGATCAGAAGTTAAGAGC 59.347 38.462 0.00 0.00 0.00 4.09
1386 1426 8.980481 AAAGGAAAACAGATCAGAAGTTAAGA 57.020 30.769 0.00 0.00 0.00 2.10
1452 1493 1.444836 GGCGCAATAACTGTACCACA 58.555 50.000 10.83 0.00 0.00 4.17
1491 1532 7.625817 GCAGCCTTAGATATTTGCATCATACTG 60.626 40.741 0.00 0.00 0.00 2.74
1508 1549 7.559590 AATTAAGTATTCAGTGCAGCCTTAG 57.440 36.000 0.00 0.00 0.00 2.18
1820 1869 9.444534 CTGCACTATATAGTTATTAGCTCATCG 57.555 37.037 12.87 0.00 33.46 3.84
1906 1955 6.210385 TCAAAATATTGTGGTTAGGCACATGT 59.790 34.615 5.78 0.00 37.79 3.21
1922 1971 2.024414 GCCCAGTCCGCTCAAAATATT 58.976 47.619 0.00 0.00 0.00 1.28
1970 2020 4.927978 ATATCAGCTTCGTAGTTCAGCT 57.072 40.909 0.00 0.00 45.02 4.24
2044 2094 2.023673 GGCATTAATACAGTGCTGGCA 58.976 47.619 4.11 0.00 38.83 4.92
2081 2131 1.612462 CCTGCAGCATGAACAAGAGGA 60.612 52.381 8.66 0.00 39.69 3.71
2116 2166 5.697848 ATTACTTCTATTTCGTCGCACAC 57.302 39.130 0.00 0.00 0.00 3.82
2118 2168 6.990546 AGAAATTACTTCTATTTCGTCGCAC 58.009 36.000 0.00 0.00 42.90 5.34
2146 2196 2.868583 CAGCATCGTCAGGAAGTATTGG 59.131 50.000 0.00 0.00 0.00 3.16
2150 2200 4.461198 TCTATCAGCATCGTCAGGAAGTA 58.539 43.478 0.00 0.00 0.00 2.24
2158 2208 4.509230 TGCTCAAAATCTATCAGCATCGTC 59.491 41.667 0.00 0.00 35.17 4.20
2185 2235 3.488047 CGCTGATTATGTTGAGCCCAAAG 60.488 47.826 0.00 0.00 33.49 2.77
2207 2257 3.432933 TCGCGGGTGTTAATAAACTTGAC 59.567 43.478 6.13 0.00 36.51 3.18
2236 2286 7.872163 TTAAAAATGCTGCTACAAATCACAG 57.128 32.000 0.00 0.00 0.00 3.66
2328 2378 6.773976 AAAACATCCAGAGTTTGTTCTTCA 57.226 33.333 0.00 0.00 39.02 3.02
2346 2396 9.778741 AGTTCATACTTGTCTGAAGATAAAACA 57.221 29.630 2.50 0.00 32.33 2.83
2383 2433 4.836125 TTCCACAACAGAATCTCAAAGC 57.164 40.909 0.00 0.00 0.00 3.51
2429 2481 9.838339 ACCGTATGATCAAATTTCTTAGAAGAT 57.162 29.630 0.00 0.00 34.49 2.40
2434 2486 9.489084 TCCATACCGTATGATCAAATTTCTTAG 57.511 33.333 18.46 0.00 38.45 2.18
2443 2495 5.023452 AGCCTATCCATACCGTATGATCAA 58.977 41.667 18.46 3.45 38.45 2.57
2444 2496 4.402474 CAGCCTATCCATACCGTATGATCA 59.598 45.833 18.46 0.00 38.45 2.92
2447 2499 3.096852 CCAGCCTATCCATACCGTATGA 58.903 50.000 18.46 6.62 38.45 2.15
2450 2502 1.148446 ACCCAGCCTATCCATACCGTA 59.852 52.381 0.00 0.00 0.00 4.02
2457 2509 2.711009 CAAATCCTACCCAGCCTATCCA 59.289 50.000 0.00 0.00 0.00 3.41
2458 2510 2.553247 GCAAATCCTACCCAGCCTATCC 60.553 54.545 0.00 0.00 0.00 2.59
2489 2541 0.807496 GCATGCACAAGAGAACCTCC 59.193 55.000 14.21 0.00 0.00 4.30
2501 2553 4.438744 GGTTTGGTAATGAGTAGCATGCAC 60.439 45.833 21.98 15.57 39.87 4.57
2560 2613 3.655276 AATTCAAGGAAAGCTGTGCTG 57.345 42.857 0.00 0.00 39.62 4.41
2567 2620 6.071391 TGGACAAAGGATAATTCAAGGAAAGC 60.071 38.462 0.00 0.00 0.00 3.51
2568 2621 7.363268 CCTGGACAAAGGATAATTCAAGGAAAG 60.363 40.741 0.00 0.00 40.02 2.62
2577 2630 5.955959 GGTTAACCCTGGACAAAGGATAATT 59.044 40.000 14.16 0.00 40.02 1.40
2578 2631 5.015817 TGGTTAACCCTGGACAAAGGATAAT 59.984 40.000 21.97 0.00 40.02 1.28
2581 2634 2.719705 TGGTTAACCCTGGACAAAGGAT 59.280 45.455 21.97 0.00 40.02 3.24
2588 2641 4.659115 ACTGTATTTGGTTAACCCTGGAC 58.341 43.478 21.97 14.45 34.29 4.02
2594 2647 6.263617 TCCAAGTGAACTGTATTTGGTTAACC 59.736 38.462 18.27 18.27 39.39 2.85
2603 2656 6.491403 AGCTTTCATTCCAAGTGAACTGTATT 59.509 34.615 0.00 0.00 35.47 1.89
2658 2711 7.095270 GCTGAATTTCCAGAAAGAACATCATT 58.905 34.615 0.00 0.00 36.29 2.57
2661 2714 5.860716 GTGCTGAATTTCCAGAAAGAACATC 59.139 40.000 0.00 0.00 36.29 3.06
2673 2726 6.449698 TCAAGAAAAGATGTGCTGAATTTCC 58.550 36.000 0.00 0.00 0.00 3.13
2677 2730 7.439381 ACAATTCAAGAAAAGATGTGCTGAAT 58.561 30.769 0.00 0.00 0.00 2.57
2685 2738 7.473027 AACAGCAACAATTCAAGAAAAGATG 57.527 32.000 0.00 0.00 0.00 2.90
2687 2740 6.873076 ACAAACAGCAACAATTCAAGAAAAGA 59.127 30.769 0.00 0.00 0.00 2.52
2701 2754 6.090129 TCTGTGACTTTTAACAAACAGCAAC 58.910 36.000 0.00 0.00 35.98 4.17
2736 2789 3.930336 ACGAATGAGCTGTCATCTCAAA 58.070 40.909 10.28 0.00 43.04 2.69
2740 2793 4.820897 TGTAAACGAATGAGCTGTCATCT 58.179 39.130 0.00 0.00 43.04 2.90
2756 2809 5.932303 TGTCTTCAATGCTAGTCCTGTAAAC 59.068 40.000 0.00 0.00 0.00 2.01
2760 2813 4.223700 TGATGTCTTCAATGCTAGTCCTGT 59.776 41.667 0.00 0.00 0.00 4.00
2868 2921 9.995003 TCAATGATAAACTTAAAGGTTGCAAAT 57.005 25.926 0.00 0.00 0.00 2.32
2889 2942 3.508793 AGTGCTGAAGGACCATTTCAATG 59.491 43.478 0.00 0.00 37.04 2.82
2892 2945 2.553028 GGAGTGCTGAAGGACCATTTCA 60.553 50.000 0.00 0.00 37.04 2.69
2962 3017 6.155221 TGGAGTGATAAGAACTCAACTGCTAT 59.845 38.462 5.97 0.00 44.86 2.97
3000 3055 7.613801 AGGGTAACATGTTGCAACTAAATATCA 59.386 33.333 28.61 7.83 39.74 2.15
3002 3057 7.068226 GGAGGGTAACATGTTGCAACTAAATAT 59.932 37.037 28.61 11.95 39.74 1.28
3016 3071 0.034477 GTGGTGGGGAGGGTAACATG 60.034 60.000 0.00 0.00 39.74 3.21
3017 3072 0.476808 TGTGGTGGGGAGGGTAACAT 60.477 55.000 0.00 0.00 39.74 2.71
3018 3073 0.698198 TTGTGGTGGGGAGGGTAACA 60.698 55.000 0.00 0.00 39.74 2.41
3022 3077 2.020137 TTTTTGTGGTGGGGAGGGT 58.980 52.632 0.00 0.00 0.00 4.34
3041 3096 8.049655 ACAGCACCATAAATTTTGTTTTTGTT 57.950 26.923 0.00 0.00 0.00 2.83
3043 3098 9.432077 GTAACAGCACCATAAATTTTGTTTTTG 57.568 29.630 7.30 0.00 0.00 2.44
3057 3123 3.244561 ACTTACAGCAGTAACAGCACCAT 60.245 43.478 0.00 0.00 35.37 3.55
3075 3141 5.755409 AGGTGACCATCATGTAACACTTA 57.245 39.130 3.63 0.00 0.00 2.24
3091 3157 0.389426 TCGGCGCTTCTTAAGGTGAC 60.389 55.000 7.64 0.00 0.00 3.67
3108 3174 3.986128 ACGAAGATAAATTGCGTTGTCG 58.014 40.909 0.00 0.00 40.37 4.35
3166 3232 4.056050 GTTCCTTTCTTGAGTCTGCGTTA 58.944 43.478 0.00 0.00 0.00 3.18
3167 3233 2.872858 GTTCCTTTCTTGAGTCTGCGTT 59.127 45.455 0.00 0.00 0.00 4.84
3316 3383 6.013842 AGTCCCAAGAAATCGAATCAAAAC 57.986 37.500 0.00 0.00 0.00 2.43
3321 3388 5.629079 AACAAGTCCCAAGAAATCGAATC 57.371 39.130 0.00 0.00 0.00 2.52
3332 3399 1.136695 CAGCTGCAAAACAAGTCCCAA 59.863 47.619 0.00 0.00 0.00 4.12
3370 3437 1.472878 TGGTCATCGTAGCTCTGACAC 59.527 52.381 15.99 9.07 40.80 3.67
3381 3448 2.499289 AGAGAAGCTCAATGGTCATCGT 59.501 45.455 0.00 0.00 32.06 3.73
3383 3450 3.204526 CCAGAGAAGCTCAATGGTCATC 58.795 50.000 0.00 0.00 32.06 2.92
3406 3473 3.622163 CACAGCAGATGTCTCTTGATTCC 59.378 47.826 0.00 0.00 41.41 3.01
3407 3474 4.252073 ACACAGCAGATGTCTCTTGATTC 58.748 43.478 0.00 0.00 41.41 2.52
3408 3475 4.283363 ACACAGCAGATGTCTCTTGATT 57.717 40.909 0.00 0.00 41.41 2.57
3409 3476 3.977134 ACACAGCAGATGTCTCTTGAT 57.023 42.857 0.00 0.00 41.41 2.57
3515 3590 2.609459 ACGTCTTGCAACTCAGAAACAG 59.391 45.455 0.00 0.00 0.00 3.16
3559 3634 1.228245 GCAGGAAACAGGAGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
3585 3661 6.238953 GGATGATCACTAAAGCAAGCATCAAT 60.239 38.462 0.00 0.00 34.21 2.57
3632 3708 6.816140 GTGAAAAACAAATGTCAAGGGAGAAA 59.184 34.615 0.00 0.00 0.00 2.52
3657 3733 5.997746 TCTCATTAAGACTTGGACACCAAAG 59.002 40.000 4.78 2.55 43.44 2.77
3707 3786 9.297037 GTATATAACTGCAGTAATTTGGGGAAT 57.703 33.333 22.01 1.75 0.00 3.01
3785 3864 9.892130 CTCCCTCAGTAAAGAAATATAAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
3786 3865 9.047947 ACTCCCTCAGTAAAGAAATATAAGTGT 57.952 33.333 0.00 0.00 31.37 3.55
3792 3871 8.929487 CCTTCTACTCCCTCAGTAAAGAAATAT 58.071 37.037 0.00 0.00 37.13 1.28
3793 3872 8.120538 TCCTTCTACTCCCTCAGTAAAGAAATA 58.879 37.037 0.00 0.00 37.13 1.40
3794 3873 6.960542 TCCTTCTACTCCCTCAGTAAAGAAAT 59.039 38.462 0.00 0.00 37.13 2.17
3795 3874 6.320518 TCCTTCTACTCCCTCAGTAAAGAAA 58.679 40.000 0.00 0.00 37.13 2.52
3796 3875 5.900437 TCCTTCTACTCCCTCAGTAAAGAA 58.100 41.667 0.00 0.00 37.13 2.52
3797 3876 5.531753 TCCTTCTACTCCCTCAGTAAAGA 57.468 43.478 0.00 0.00 37.13 2.52
3798 3877 6.607004 TTTCCTTCTACTCCCTCAGTAAAG 57.393 41.667 0.00 0.00 37.13 1.85
3799 3878 6.960542 AGATTTCCTTCTACTCCCTCAGTAAA 59.039 38.462 0.00 0.00 37.13 2.01
3800 3879 6.381420 CAGATTTCCTTCTACTCCCTCAGTAA 59.619 42.308 0.00 0.00 37.13 2.24
3801 3880 5.894393 CAGATTTCCTTCTACTCCCTCAGTA 59.106 44.000 0.00 0.00 36.43 2.74
3802 3881 4.714308 CAGATTTCCTTCTACTCCCTCAGT 59.286 45.833 0.00 0.00 39.41 3.41
3803 3882 4.714308 ACAGATTTCCTTCTACTCCCTCAG 59.286 45.833 0.00 0.00 0.00 3.35
3804 3883 4.689062 ACAGATTTCCTTCTACTCCCTCA 58.311 43.478 0.00 0.00 0.00 3.86
3805 3884 4.712337 TGACAGATTTCCTTCTACTCCCTC 59.288 45.833 0.00 0.00 0.00 4.30
3806 3885 4.689062 TGACAGATTTCCTTCTACTCCCT 58.311 43.478 0.00 0.00 0.00 4.20
3807 3886 5.422214 TTGACAGATTTCCTTCTACTCCC 57.578 43.478 0.00 0.00 0.00 4.30
3808 3887 7.094592 CCTTTTTGACAGATTTCCTTCTACTCC 60.095 40.741 0.00 0.00 0.00 3.85
3809 3888 7.661847 TCCTTTTTGACAGATTTCCTTCTACTC 59.338 37.037 0.00 0.00 0.00 2.59
3810 3889 7.518188 TCCTTTTTGACAGATTTCCTTCTACT 58.482 34.615 0.00 0.00 0.00 2.57
3811 3890 7.745620 TCCTTTTTGACAGATTTCCTTCTAC 57.254 36.000 0.00 0.00 0.00 2.59
3812 3891 8.760980 TTTCCTTTTTGACAGATTTCCTTCTA 57.239 30.769 0.00 0.00 0.00 2.10
3813 3892 7.660030 TTTCCTTTTTGACAGATTTCCTTCT 57.340 32.000 0.00 0.00 0.00 2.85
3814 3893 9.981114 TTATTTCCTTTTTGACAGATTTCCTTC 57.019 29.630 0.00 0.00 0.00 3.46
3841 3920 7.770201 TCAACTTCAGAATCAAAATGTGTTCA 58.230 30.769 0.00 0.00 0.00 3.18
3855 3934 5.513788 CCCCTCTGAGATTTCAACTTCAGAA 60.514 44.000 6.17 0.00 34.41 3.02
3875 3954 1.357272 TGGGTGTTACAGCAACCCCT 61.357 55.000 16.50 0.00 45.36 4.79
3886 3966 2.043992 ACGGCTATGCTATGGGTGTTA 58.956 47.619 0.00 0.00 0.00 2.41
3905 3986 8.664211 TGAAGAAGAAGAAGAAGAGGTAAAAC 57.336 34.615 0.00 0.00 0.00 2.43
3940 4021 8.533569 ACCATATTAGGGTGGAAATTTACAAG 57.466 34.615 4.20 0.00 37.23 3.16
3970 4051 3.255888 CCCTAAGAAAAGGAGGCAACAAC 59.744 47.826 0.00 0.00 39.15 3.32
3989 4076 8.475639 CATGATTCAGATCAGAAATTTTTCCCT 58.524 33.333 4.51 0.00 45.01 4.20
3991 4078 7.224167 GCCATGATTCAGATCAGAAATTTTTCC 59.776 37.037 4.51 0.00 45.01 3.13
3999 4086 5.072736 ACCTATGCCATGATTCAGATCAGAA 59.927 40.000 2.74 2.74 45.01 3.02
4016 4103 2.158900 TCAGGAGCAGCTAAACCTATGC 60.159 50.000 0.00 0.00 38.97 3.14
4028 4115 4.108699 GCTAGTAGCATATCAGGAGCAG 57.891 50.000 17.47 0.00 41.89 4.24
4069 4158 1.122019 ACGAGGGAGCTGTTCCTTGT 61.122 55.000 10.49 12.23 45.98 3.16
4073 4162 0.530870 GCATACGAGGGAGCTGTTCC 60.531 60.000 1.35 1.35 46.00 3.62
4082 4171 5.178252 CAGTTTATCATTCAGCATACGAGGG 59.822 44.000 0.00 0.00 0.00 4.30
4084 4173 7.468922 TTCAGTTTATCATTCAGCATACGAG 57.531 36.000 0.00 0.00 0.00 4.18
4119 4208 1.488393 GTCCCTAGCTGCAATCCTTCT 59.512 52.381 1.02 0.00 0.00 2.85
4132 4221 4.788679 ACCAATTTTAATCCCGTCCCTAG 58.211 43.478 0.00 0.00 0.00 3.02
4136 4225 3.512329 ACCAACCAATTTTAATCCCGTCC 59.488 43.478 0.00 0.00 0.00 4.79
4137 4226 4.794278 ACCAACCAATTTTAATCCCGTC 57.206 40.909 0.00 0.00 0.00 4.79
4166 4256 1.283613 TCCACACCCCACCATGATTAC 59.716 52.381 0.00 0.00 0.00 1.89
4192 4282 1.251251 GTCACTTGCTGCATTCCCTT 58.749 50.000 1.84 0.00 0.00 3.95
4263 4359 0.110486 TCTTGGTGAACCCCAGCTTC 59.890 55.000 0.00 0.00 43.38 3.86
4285 4381 1.002069 TCTGGATTTGCCTGGATGGT 58.998 50.000 0.00 0.00 38.35 3.55
4299 4395 8.418597 ACTATACAAAGTAAACAGAGTCTGGA 57.581 34.615 23.79 6.34 35.51 3.86
4316 4412 4.441079 GGAGAACGCCTGCTTACTATACAA 60.441 45.833 0.00 0.00 0.00 2.41
4319 4415 3.563223 AGGAGAACGCCTGCTTACTATA 58.437 45.455 0.00 0.00 41.04 1.31
4321 4417 1.749634 GAGGAGAACGCCTGCTTACTA 59.250 52.381 1.24 0.00 44.09 1.82
4323 4419 0.802607 CGAGGAGAACGCCTGCTTAC 60.803 60.000 1.24 0.00 44.09 2.34
4324 4420 1.511305 CGAGGAGAACGCCTGCTTA 59.489 57.895 1.24 0.00 44.09 3.09
4325 4421 2.262915 CGAGGAGAACGCCTGCTT 59.737 61.111 1.24 0.00 44.09 3.91
4332 4438 1.497722 GCAAAAGGCGAGGAGAACG 59.502 57.895 0.00 0.00 0.00 3.95
4350 4456 5.633601 TCTCTGAACAAACTAACTATGCACG 59.366 40.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.