Multiple sequence alignment - TraesCS5A01G371400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G371400 chr5A 100.000 2582 0 0 1 2582 570249124 570251705 0.000000e+00 4769.0
1 TraesCS5A01G371400 chr5D 91.095 1662 78 20 621 2215 451040316 451041974 0.000000e+00 2185.0
2 TraesCS5A01G371400 chr5D 87.980 391 39 8 2055 2443 451066759 451067143 3.030000e-124 455.0
3 TraesCS5A01G371400 chr5D 88.294 299 34 1 302 600 451040027 451040324 8.790000e-95 357.0
4 TraesCS5A01G371400 chr5B 93.570 1462 64 11 365 1800 551297369 551298826 0.000000e+00 2152.0
5 TraesCS5A01G371400 chr5B 86.327 490 34 9 1796 2256 551298848 551299333 1.070000e-138 503.0
6 TraesCS5A01G371400 chr5B 92.278 259 20 0 1 259 578434810 578434552 4.060000e-98 368.0
7 TraesCS5A01G371400 chr5B 89.655 290 26 4 2294 2582 551307954 551308240 1.460000e-97 366.0
8 TraesCS5A01G371400 chr3A 93.050 259 18 0 1 259 443342131 443341873 1.880000e-101 379.0
9 TraesCS5A01G371400 chr3A 92.278 259 20 0 1 259 665611057 665610799 4.060000e-98 368.0
10 TraesCS5A01G371400 chr3A 100.000 29 0 0 2444 2472 730117541 730117569 1.000000e-03 54.7
11 TraesCS5A01G371400 chr2A 93.050 259 17 1 1 259 624441316 624441059 6.740000e-101 377.0
12 TraesCS5A01G371400 chr7A 93.281 253 17 0 1 253 115718035 115718287 8.720000e-100 374.0
13 TraesCS5A01G371400 chr7A 92.278 259 20 0 1 259 72079559 72079301 4.060000e-98 368.0
14 TraesCS5A01G371400 chr7A 92.885 253 18 0 1 253 129362014 129362266 4.060000e-98 368.0
15 TraesCS5A01G371400 chr4A 93.227 251 17 0 1 251 35585140 35585390 1.130000e-98 370.0
16 TraesCS5A01G371400 chr4A 92.500 40 3 0 2433 2472 620428944 620428905 9.980000e-05 58.4
17 TraesCS5A01G371400 chr2D 91.892 259 21 0 1 259 156015859 156015601 1.890000e-96 363.0
18 TraesCS5A01G371400 chr3D 95.652 46 2 0 2430 2475 488868371 488868416 9.910000e-10 75.0
19 TraesCS5A01G371400 chr6D 97.297 37 1 0 2433 2469 73499894 73499858 2.140000e-06 63.9
20 TraesCS5A01G371400 chr3B 100.000 29 0 0 2444 2472 807975404 807975376 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G371400 chr5A 570249124 570251705 2581 False 4769.0 4769 100.0000 1 2582 1 chr5A.!!$F1 2581
1 TraesCS5A01G371400 chr5D 451040027 451041974 1947 False 1271.0 2185 89.6945 302 2215 2 chr5D.!!$F2 1913
2 TraesCS5A01G371400 chr5B 551297369 551299333 1964 False 1327.5 2152 89.9485 365 2256 2 chr5B.!!$F2 1891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.034059 CCAACGACTGAAGACTGGCT 59.966 55.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2391 0.036294 GCTTAAGAGTTCGCCCCACT 60.036 55.0 6.67 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.695851 AAGCTACAATGAAGACACAAAGG 57.304 39.130 0.00 0.00 0.00 3.11
23 24 4.973168 AGCTACAATGAAGACACAAAGGA 58.027 39.130 0.00 0.00 0.00 3.36
24 25 4.757149 AGCTACAATGAAGACACAAAGGAC 59.243 41.667 0.00 0.00 0.00 3.85
25 26 4.757149 GCTACAATGAAGACACAAAGGACT 59.243 41.667 0.00 0.00 0.00 3.85
26 27 5.932303 GCTACAATGAAGACACAAAGGACTA 59.068 40.000 0.00 0.00 0.00 2.59
27 28 6.091441 GCTACAATGAAGACACAAAGGACTAG 59.909 42.308 0.00 0.00 0.00 2.57
28 29 5.308825 ACAATGAAGACACAAAGGACTAGG 58.691 41.667 0.00 0.00 0.00 3.02
29 30 5.071788 ACAATGAAGACACAAAGGACTAGGA 59.928 40.000 0.00 0.00 0.00 2.94
30 31 4.873746 TGAAGACACAAAGGACTAGGAG 57.126 45.455 0.00 0.00 0.00 3.69
31 32 4.480115 TGAAGACACAAAGGACTAGGAGA 58.520 43.478 0.00 0.00 0.00 3.71
32 33 4.281182 TGAAGACACAAAGGACTAGGAGAC 59.719 45.833 0.00 0.00 0.00 3.36
33 34 3.845860 AGACACAAAGGACTAGGAGACA 58.154 45.455 0.00 0.00 0.00 3.41
34 35 4.223953 AGACACAAAGGACTAGGAGACAA 58.776 43.478 0.00 0.00 0.00 3.18
35 36 4.039366 AGACACAAAGGACTAGGAGACAAC 59.961 45.833 0.00 0.00 0.00 3.32
36 37 3.709653 ACACAAAGGACTAGGAGACAACA 59.290 43.478 0.00 0.00 0.00 3.33
37 38 4.163458 ACACAAAGGACTAGGAGACAACAA 59.837 41.667 0.00 0.00 0.00 2.83
38 39 4.752101 CACAAAGGACTAGGAGACAACAAG 59.248 45.833 0.00 0.00 0.00 3.16
39 40 4.654262 ACAAAGGACTAGGAGACAACAAGA 59.346 41.667 0.00 0.00 0.00 3.02
40 41 5.130477 ACAAAGGACTAGGAGACAACAAGAA 59.870 40.000 0.00 0.00 0.00 2.52
41 42 5.888982 AAGGACTAGGAGACAACAAGAAA 57.111 39.130 0.00 0.00 0.00 2.52
42 43 5.888982 AGGACTAGGAGACAACAAGAAAA 57.111 39.130 0.00 0.00 0.00 2.29
43 44 6.441088 AGGACTAGGAGACAACAAGAAAAT 57.559 37.500 0.00 0.00 0.00 1.82
44 45 6.468543 AGGACTAGGAGACAACAAGAAAATC 58.531 40.000 0.00 0.00 0.00 2.17
45 46 5.644206 GGACTAGGAGACAACAAGAAAATCC 59.356 44.000 0.00 0.00 0.00 3.01
46 47 6.187727 ACTAGGAGACAACAAGAAAATCCA 57.812 37.500 0.00 0.00 0.00 3.41
47 48 6.601332 ACTAGGAGACAACAAGAAAATCCAA 58.399 36.000 0.00 0.00 0.00 3.53
48 49 7.060421 ACTAGGAGACAACAAGAAAATCCAAA 58.940 34.615 0.00 0.00 0.00 3.28
49 50 6.396829 AGGAGACAACAAGAAAATCCAAAG 57.603 37.500 0.00 0.00 0.00 2.77
50 51 6.129179 AGGAGACAACAAGAAAATCCAAAGA 58.871 36.000 0.00 0.00 0.00 2.52
51 52 6.779539 AGGAGACAACAAGAAAATCCAAAGAT 59.220 34.615 0.00 0.00 0.00 2.40
52 53 7.040132 AGGAGACAACAAGAAAATCCAAAGATC 60.040 37.037 0.00 0.00 0.00 2.75
53 54 6.672147 AGACAACAAGAAAATCCAAAGATCG 58.328 36.000 0.00 0.00 0.00 3.69
54 55 6.486657 AGACAACAAGAAAATCCAAAGATCGA 59.513 34.615 0.00 0.00 0.00 3.59
55 56 7.175641 AGACAACAAGAAAATCCAAAGATCGAT 59.824 33.333 0.00 0.00 0.00 3.59
56 57 7.086376 ACAACAAGAAAATCCAAAGATCGATG 58.914 34.615 0.54 0.00 0.00 3.84
57 58 5.644644 ACAAGAAAATCCAAAGATCGATGC 58.355 37.500 0.54 0.00 0.00 3.91
58 59 5.183713 ACAAGAAAATCCAAAGATCGATGCA 59.816 36.000 0.54 0.00 0.00 3.96
59 60 5.902613 AGAAAATCCAAAGATCGATGCAA 57.097 34.783 0.54 0.00 0.00 4.08
60 61 5.888105 AGAAAATCCAAAGATCGATGCAAG 58.112 37.500 0.54 0.00 0.00 4.01
61 62 5.416952 AGAAAATCCAAAGATCGATGCAAGT 59.583 36.000 0.54 0.00 0.00 3.16
62 63 4.889832 AATCCAAAGATCGATGCAAGTC 57.110 40.909 0.54 0.00 0.00 3.01
63 64 3.333029 TCCAAAGATCGATGCAAGTCA 57.667 42.857 0.54 0.00 0.00 3.41
64 65 3.673902 TCCAAAGATCGATGCAAGTCAA 58.326 40.909 0.54 0.00 0.00 3.18
65 66 3.686241 TCCAAAGATCGATGCAAGTCAAG 59.314 43.478 0.54 0.00 0.00 3.02
66 67 3.686241 CCAAAGATCGATGCAAGTCAAGA 59.314 43.478 0.54 0.00 0.00 3.02
67 68 4.436584 CCAAAGATCGATGCAAGTCAAGAC 60.437 45.833 0.54 0.00 0.00 3.01
68 69 3.599730 AGATCGATGCAAGTCAAGACA 57.400 42.857 0.54 0.00 0.00 3.41
69 70 3.930336 AGATCGATGCAAGTCAAGACAA 58.070 40.909 0.54 0.00 0.00 3.18
70 71 4.318332 AGATCGATGCAAGTCAAGACAAA 58.682 39.130 0.54 0.00 0.00 2.83
71 72 4.391216 AGATCGATGCAAGTCAAGACAAAG 59.609 41.667 0.54 0.00 0.00 2.77
72 73 3.727726 TCGATGCAAGTCAAGACAAAGA 58.272 40.909 2.72 0.00 0.00 2.52
73 74 4.126437 TCGATGCAAGTCAAGACAAAGAA 58.874 39.130 2.72 0.00 0.00 2.52
74 75 4.212004 TCGATGCAAGTCAAGACAAAGAAG 59.788 41.667 2.72 0.00 0.00 2.85
75 76 4.212004 CGATGCAAGTCAAGACAAAGAAGA 59.788 41.667 2.72 0.00 0.00 2.87
76 77 5.106791 CGATGCAAGTCAAGACAAAGAAGAT 60.107 40.000 2.72 0.00 0.00 2.40
77 78 6.091305 CGATGCAAGTCAAGACAAAGAAGATA 59.909 38.462 2.72 0.00 0.00 1.98
78 79 7.360353 CGATGCAAGTCAAGACAAAGAAGATAA 60.360 37.037 2.72 0.00 0.00 1.75
79 80 7.566760 TGCAAGTCAAGACAAAGAAGATAAA 57.433 32.000 2.72 0.00 0.00 1.40
80 81 8.169977 TGCAAGTCAAGACAAAGAAGATAAAT 57.830 30.769 2.72 0.00 0.00 1.40
81 82 8.077991 TGCAAGTCAAGACAAAGAAGATAAATG 58.922 33.333 2.72 0.00 0.00 2.32
82 83 7.061557 GCAAGTCAAGACAAAGAAGATAAATGC 59.938 37.037 2.72 0.00 0.00 3.56
83 84 7.150783 AGTCAAGACAAAGAAGATAAATGCC 57.849 36.000 2.72 0.00 0.00 4.40
84 85 6.024049 GTCAAGACAAAGAAGATAAATGCCG 58.976 40.000 0.00 0.00 0.00 5.69
85 86 4.622701 AGACAAAGAAGATAAATGCCGC 57.377 40.909 0.00 0.00 0.00 6.53
86 87 4.009675 AGACAAAGAAGATAAATGCCGCA 58.990 39.130 0.00 0.00 0.00 5.69
87 88 4.458989 AGACAAAGAAGATAAATGCCGCAA 59.541 37.500 0.00 0.00 0.00 4.85
88 89 5.126061 AGACAAAGAAGATAAATGCCGCAAT 59.874 36.000 0.00 0.00 0.00 3.56
89 90 6.318648 AGACAAAGAAGATAAATGCCGCAATA 59.681 34.615 0.00 0.00 0.00 1.90
90 91 6.862209 ACAAAGAAGATAAATGCCGCAATAA 58.138 32.000 0.00 0.00 0.00 1.40
91 92 6.974622 ACAAAGAAGATAAATGCCGCAATAAG 59.025 34.615 0.00 0.00 0.00 1.73
92 93 5.113502 AGAAGATAAATGCCGCAATAAGC 57.886 39.130 0.00 0.00 40.87 3.09
93 94 4.580167 AGAAGATAAATGCCGCAATAAGCA 59.420 37.500 0.00 0.00 46.13 3.91
94 95 4.228912 AGATAAATGCCGCAATAAGCAC 57.771 40.909 0.00 0.00 46.13 4.40
95 96 3.631686 AGATAAATGCCGCAATAAGCACA 59.368 39.130 0.00 0.00 46.13 4.57
96 97 2.739885 AAATGCCGCAATAAGCACAA 57.260 40.000 0.00 0.00 46.13 3.33
97 98 2.282701 AATGCCGCAATAAGCACAAG 57.717 45.000 0.00 0.00 46.13 3.16
98 99 1.176527 ATGCCGCAATAAGCACAAGT 58.823 45.000 0.00 0.00 46.13 3.16
99 100 0.240678 TGCCGCAATAAGCACAAGTG 59.759 50.000 0.00 0.00 46.13 3.16
125 126 6.421377 AAAAATCCAAAGTCACTTTTGCAC 57.579 33.333 0.00 0.00 36.86 4.57
126 127 4.734398 AATCCAAAGTCACTTTTGCACA 57.266 36.364 0.00 0.00 36.86 4.57
127 128 4.734398 ATCCAAAGTCACTTTTGCACAA 57.266 36.364 0.00 0.00 36.86 3.33
128 129 4.734398 TCCAAAGTCACTTTTGCACAAT 57.266 36.364 0.00 0.00 36.86 2.71
129 130 5.083533 TCCAAAGTCACTTTTGCACAATT 57.916 34.783 0.00 0.00 36.86 2.32
130 131 6.214191 TCCAAAGTCACTTTTGCACAATTA 57.786 33.333 0.00 0.00 36.86 1.40
131 132 6.815089 TCCAAAGTCACTTTTGCACAATTAT 58.185 32.000 0.00 0.00 36.86 1.28
132 133 7.271511 TCCAAAGTCACTTTTGCACAATTATT 58.728 30.769 0.00 0.00 36.86 1.40
133 134 8.417106 TCCAAAGTCACTTTTGCACAATTATTA 58.583 29.630 0.00 0.00 36.86 0.98
134 135 8.702438 CCAAAGTCACTTTTGCACAATTATTAG 58.298 33.333 0.00 0.00 36.86 1.73
135 136 9.462174 CAAAGTCACTTTTGCACAATTATTAGA 57.538 29.630 0.00 0.00 30.60 2.10
162 163 8.980481 AAATACCAAAAGAAGAGTGAAGAGAA 57.020 30.769 0.00 0.00 0.00 2.87
163 164 8.980481 AATACCAAAAGAAGAGTGAAGAGAAA 57.020 30.769 0.00 0.00 0.00 2.52
164 165 8.980481 ATACCAAAAGAAGAGTGAAGAGAAAA 57.020 30.769 0.00 0.00 0.00 2.29
165 166 7.326968 ACCAAAAGAAGAGTGAAGAGAAAAG 57.673 36.000 0.00 0.00 0.00 2.27
166 167 6.887002 ACCAAAAGAAGAGTGAAGAGAAAAGT 59.113 34.615 0.00 0.00 0.00 2.66
167 168 7.394641 ACCAAAAGAAGAGTGAAGAGAAAAGTT 59.605 33.333 0.00 0.00 0.00 2.66
168 169 8.246871 CCAAAAGAAGAGTGAAGAGAAAAGTTT 58.753 33.333 0.00 0.00 0.00 2.66
169 170 9.631452 CAAAAGAAGAGTGAAGAGAAAAGTTTT 57.369 29.630 0.00 0.00 0.00 2.43
174 175 9.587461 GAAGAGTGAAGAGAAAAGTTTTTATCG 57.413 33.333 1.64 0.00 41.76 2.92
175 176 8.089115 AGAGTGAAGAGAAAAGTTTTTATCGG 57.911 34.615 1.64 0.00 41.76 4.18
176 177 6.669278 AGTGAAGAGAAAAGTTTTTATCGGC 58.331 36.000 1.64 3.43 41.76 5.54
177 178 6.486993 AGTGAAGAGAAAAGTTTTTATCGGCT 59.513 34.615 1.64 0.00 41.76 5.52
178 179 7.660208 AGTGAAGAGAAAAGTTTTTATCGGCTA 59.340 33.333 1.64 0.00 41.76 3.93
179 180 8.287503 GTGAAGAGAAAAGTTTTTATCGGCTAA 58.712 33.333 1.64 0.00 41.76 3.09
180 181 8.287503 TGAAGAGAAAAGTTTTTATCGGCTAAC 58.712 33.333 1.64 0.00 41.76 2.34
181 182 7.981102 AGAGAAAAGTTTTTATCGGCTAACT 57.019 32.000 1.64 0.00 41.76 2.24
182 183 9.498176 AAGAGAAAAGTTTTTATCGGCTAACTA 57.502 29.630 1.64 0.00 41.76 2.24
183 184 9.498176 AGAGAAAAGTTTTTATCGGCTAACTAA 57.502 29.630 1.64 0.00 41.76 2.24
186 187 9.285770 GAAAAGTTTTTATCGGCTAACTAATGG 57.714 33.333 1.64 0.00 31.06 3.16
187 188 8.570068 AAAGTTTTTATCGGCTAACTAATGGA 57.430 30.769 0.00 0.00 31.06 3.41
188 189 8.570068 AAGTTTTTATCGGCTAACTAATGGAA 57.430 30.769 0.00 0.00 31.06 3.53
189 190 8.570068 AGTTTTTATCGGCTAACTAATGGAAA 57.430 30.769 0.00 0.00 0.00 3.13
190 191 9.016438 AGTTTTTATCGGCTAACTAATGGAAAA 57.984 29.630 0.00 0.00 0.00 2.29
191 192 9.285770 GTTTTTATCGGCTAACTAATGGAAAAG 57.714 33.333 0.00 0.00 0.00 2.27
192 193 8.570068 TTTTATCGGCTAACTAATGGAAAAGT 57.430 30.769 0.00 0.00 0.00 2.66
193 194 9.669887 TTTTATCGGCTAACTAATGGAAAAGTA 57.330 29.630 0.00 0.00 0.00 2.24
194 195 9.841295 TTTATCGGCTAACTAATGGAAAAGTAT 57.159 29.630 0.00 0.00 0.00 2.12
195 196 7.964604 ATCGGCTAACTAATGGAAAAGTATC 57.035 36.000 0.00 0.00 0.00 2.24
196 197 6.880484 TCGGCTAACTAATGGAAAAGTATCA 58.120 36.000 0.00 0.00 0.00 2.15
197 198 7.332557 TCGGCTAACTAATGGAAAAGTATCAA 58.667 34.615 0.00 0.00 0.00 2.57
198 199 7.494625 TCGGCTAACTAATGGAAAAGTATCAAG 59.505 37.037 0.00 0.00 0.00 3.02
199 200 7.494625 CGGCTAACTAATGGAAAAGTATCAAGA 59.505 37.037 0.00 0.00 0.00 3.02
200 201 9.343539 GGCTAACTAATGGAAAAGTATCAAGAT 57.656 33.333 0.00 0.00 0.00 2.40
204 205 8.738645 ACTAATGGAAAAGTATCAAGATCACC 57.261 34.615 0.00 0.00 0.00 4.02
205 206 7.775561 ACTAATGGAAAAGTATCAAGATCACCC 59.224 37.037 0.00 0.00 0.00 4.61
206 207 4.855340 TGGAAAAGTATCAAGATCACCCC 58.145 43.478 0.00 0.00 0.00 4.95
207 208 4.207955 GGAAAAGTATCAAGATCACCCCC 58.792 47.826 0.00 0.00 0.00 5.40
208 209 4.079730 GGAAAAGTATCAAGATCACCCCCT 60.080 45.833 0.00 0.00 0.00 4.79
209 210 5.132144 GGAAAAGTATCAAGATCACCCCCTA 59.868 44.000 0.00 0.00 0.00 3.53
210 211 5.896073 AAAGTATCAAGATCACCCCCTAG 57.104 43.478 0.00 0.00 0.00 3.02
211 212 3.863086 AGTATCAAGATCACCCCCTAGG 58.137 50.000 0.06 0.06 43.78 3.02
212 213 1.439543 ATCAAGATCACCCCCTAGGC 58.560 55.000 2.05 0.00 40.58 3.93
213 214 1.048724 TCAAGATCACCCCCTAGGCG 61.049 60.000 2.05 0.00 40.58 5.52
214 215 2.444256 AAGATCACCCCCTAGGCGC 61.444 63.158 2.05 0.00 40.58 6.53
215 216 3.161450 GATCACCCCCTAGGCGCA 61.161 66.667 10.83 0.00 40.58 6.09
216 217 2.690881 ATCACCCCCTAGGCGCAA 60.691 61.111 10.83 0.00 40.58 4.85
217 218 2.265467 GATCACCCCCTAGGCGCAAA 62.265 60.000 10.83 0.00 40.58 3.68
218 219 2.552231 ATCACCCCCTAGGCGCAAAC 62.552 60.000 10.83 0.00 40.58 2.93
219 220 4.043100 ACCCCCTAGGCGCAAACC 62.043 66.667 10.83 0.00 40.58 3.27
220 221 4.815108 CCCCCTAGGCGCAAACCC 62.815 72.222 10.83 0.00 0.00 4.11
222 223 4.090588 CCCTAGGCGCAAACCCGA 62.091 66.667 10.83 0.00 0.00 5.14
223 224 2.511600 CCTAGGCGCAAACCCGAG 60.512 66.667 10.83 0.00 0.00 4.63
224 225 2.511600 CTAGGCGCAAACCCGAGG 60.512 66.667 10.83 0.00 0.00 4.63
225 226 2.998480 TAGGCGCAAACCCGAGGA 60.998 61.111 10.83 0.00 0.00 3.71
226 227 2.311688 CTAGGCGCAAACCCGAGGAT 62.312 60.000 10.83 0.00 0.00 3.24
227 228 2.306255 TAGGCGCAAACCCGAGGATC 62.306 60.000 10.83 0.00 0.00 3.36
242 243 4.228912 GAGGATCGGTATTGGCAAAATG 57.771 45.455 3.01 0.00 0.00 2.32
243 244 3.882888 GAGGATCGGTATTGGCAAAATGA 59.117 43.478 3.01 0.36 0.00 2.57
244 245 4.277476 AGGATCGGTATTGGCAAAATGAA 58.723 39.130 3.01 0.00 0.00 2.57
245 246 4.709397 AGGATCGGTATTGGCAAAATGAAA 59.291 37.500 3.01 0.00 0.00 2.69
246 247 5.186797 AGGATCGGTATTGGCAAAATGAAAA 59.813 36.000 3.01 0.00 0.00 2.29
247 248 6.048509 GGATCGGTATTGGCAAAATGAAAAT 58.951 36.000 3.01 0.00 0.00 1.82
248 249 6.538381 GGATCGGTATTGGCAAAATGAAAATT 59.462 34.615 3.01 0.00 0.00 1.82
249 250 6.959671 TCGGTATTGGCAAAATGAAAATTC 57.040 33.333 3.01 0.00 0.00 2.17
250 251 6.696411 TCGGTATTGGCAAAATGAAAATTCT 58.304 32.000 3.01 0.00 0.00 2.40
251 252 7.831753 TCGGTATTGGCAAAATGAAAATTCTA 58.168 30.769 3.01 0.00 0.00 2.10
252 253 8.307483 TCGGTATTGGCAAAATGAAAATTCTAA 58.693 29.630 3.01 0.00 0.00 2.10
253 254 8.594687 CGGTATTGGCAAAATGAAAATTCTAAG 58.405 33.333 3.01 0.00 0.00 2.18
254 255 8.882736 GGTATTGGCAAAATGAAAATTCTAAGG 58.117 33.333 3.01 0.00 0.00 2.69
255 256 9.435688 GTATTGGCAAAATGAAAATTCTAAGGT 57.564 29.630 3.01 0.00 0.00 3.50
256 257 7.727331 TTGGCAAAATGAAAATTCTAAGGTG 57.273 32.000 0.00 0.00 0.00 4.00
257 258 6.229733 TGGCAAAATGAAAATTCTAAGGTGG 58.770 36.000 0.00 0.00 0.00 4.61
258 259 6.183361 TGGCAAAATGAAAATTCTAAGGTGGT 60.183 34.615 0.00 0.00 0.00 4.16
259 260 6.710295 GGCAAAATGAAAATTCTAAGGTGGTT 59.290 34.615 0.00 0.00 0.00 3.67
260 261 7.228507 GGCAAAATGAAAATTCTAAGGTGGTTT 59.771 33.333 0.00 0.00 0.00 3.27
261 262 8.069574 GCAAAATGAAAATTCTAAGGTGGTTTG 58.930 33.333 0.00 0.00 0.00 2.93
262 263 8.558700 CAAAATGAAAATTCTAAGGTGGTTTGG 58.441 33.333 0.00 0.00 0.00 3.28
263 264 7.610580 AATGAAAATTCTAAGGTGGTTTGGA 57.389 32.000 0.00 0.00 0.00 3.53
264 265 7.610580 ATGAAAATTCTAAGGTGGTTTGGAA 57.389 32.000 0.00 0.00 33.05 3.53
265 266 7.049799 TGAAAATTCTAAGGTGGTTTGGAAG 57.950 36.000 0.00 0.00 32.22 3.46
266 267 6.609616 TGAAAATTCTAAGGTGGTTTGGAAGT 59.390 34.615 0.00 0.00 32.22 3.01
267 268 7.125053 TGAAAATTCTAAGGTGGTTTGGAAGTT 59.875 33.333 0.00 0.00 37.41 2.66
268 269 6.405278 AATTCTAAGGTGGTTTGGAAGTTG 57.595 37.500 0.00 0.00 32.22 3.16
269 270 4.781775 TCTAAGGTGGTTTGGAAGTTGA 57.218 40.909 0.00 0.00 0.00 3.18
270 271 5.118729 TCTAAGGTGGTTTGGAAGTTGAA 57.881 39.130 0.00 0.00 0.00 2.69
271 272 5.130350 TCTAAGGTGGTTTGGAAGTTGAAG 58.870 41.667 0.00 0.00 0.00 3.02
272 273 3.662759 AGGTGGTTTGGAAGTTGAAGA 57.337 42.857 0.00 0.00 0.00 2.87
273 274 3.976015 AGGTGGTTTGGAAGTTGAAGAA 58.024 40.909 0.00 0.00 0.00 2.52
274 275 3.954258 AGGTGGTTTGGAAGTTGAAGAAG 59.046 43.478 0.00 0.00 0.00 2.85
275 276 3.490933 GGTGGTTTGGAAGTTGAAGAAGC 60.491 47.826 0.00 0.00 0.00 3.86
276 277 2.357637 TGGTTTGGAAGTTGAAGAAGCG 59.642 45.455 0.00 0.00 0.00 4.68
277 278 2.357952 GGTTTGGAAGTTGAAGAAGCGT 59.642 45.455 0.00 0.00 0.00 5.07
278 279 3.363178 GTTTGGAAGTTGAAGAAGCGTG 58.637 45.455 0.00 0.00 0.00 5.34
279 280 2.325583 TGGAAGTTGAAGAAGCGTGT 57.674 45.000 0.00 0.00 0.00 4.49
280 281 1.939934 TGGAAGTTGAAGAAGCGTGTG 59.060 47.619 0.00 0.00 0.00 3.82
281 282 1.940613 GGAAGTTGAAGAAGCGTGTGT 59.059 47.619 0.00 0.00 0.00 3.72
282 283 2.354821 GGAAGTTGAAGAAGCGTGTGTT 59.645 45.455 0.00 0.00 0.00 3.32
283 284 3.181500 GGAAGTTGAAGAAGCGTGTGTTT 60.181 43.478 0.00 0.00 0.00 2.83
284 285 4.412207 GAAGTTGAAGAAGCGTGTGTTTT 58.588 39.130 0.00 0.00 0.00 2.43
285 286 4.434713 AGTTGAAGAAGCGTGTGTTTTT 57.565 36.364 0.00 0.00 0.00 1.94
286 287 4.412207 AGTTGAAGAAGCGTGTGTTTTTC 58.588 39.130 0.00 0.00 0.00 2.29
287 288 4.083003 AGTTGAAGAAGCGTGTGTTTTTCA 60.083 37.500 0.00 0.00 0.00 2.69
288 289 4.630894 TGAAGAAGCGTGTGTTTTTCAT 57.369 36.364 0.00 0.00 0.00 2.57
289 290 4.597079 TGAAGAAGCGTGTGTTTTTCATC 58.403 39.130 0.00 0.00 0.00 2.92
290 291 3.626028 AGAAGCGTGTGTTTTTCATCC 57.374 42.857 0.00 0.00 0.00 3.51
291 292 2.948979 AGAAGCGTGTGTTTTTCATCCA 59.051 40.909 0.00 0.00 0.00 3.41
292 293 3.380004 AGAAGCGTGTGTTTTTCATCCAA 59.620 39.130 0.00 0.00 0.00 3.53
293 294 3.078594 AGCGTGTGTTTTTCATCCAAC 57.921 42.857 0.00 0.00 0.00 3.77
294 295 1.778591 GCGTGTGTTTTTCATCCAACG 59.221 47.619 0.00 0.00 0.00 4.10
295 296 2.539953 GCGTGTGTTTTTCATCCAACGA 60.540 45.455 0.00 0.00 0.00 3.85
296 297 3.033185 CGTGTGTTTTTCATCCAACGAC 58.967 45.455 0.00 0.00 0.00 4.34
297 298 3.242608 CGTGTGTTTTTCATCCAACGACT 60.243 43.478 0.00 0.00 0.00 4.18
298 299 4.035017 GTGTGTTTTTCATCCAACGACTG 58.965 43.478 0.00 0.00 0.00 3.51
299 300 3.942115 TGTGTTTTTCATCCAACGACTGA 59.058 39.130 0.00 0.00 0.00 3.41
300 301 4.396478 TGTGTTTTTCATCCAACGACTGAA 59.604 37.500 0.00 0.00 0.00 3.02
306 307 2.029020 TCATCCAACGACTGAAGACTGG 60.029 50.000 0.00 0.00 0.00 4.00
308 309 0.034059 CCAACGACTGAAGACTGGCT 59.966 55.000 0.00 0.00 0.00 4.75
315 316 4.452455 ACGACTGAAGACTGGCTTAAATTG 59.548 41.667 0.00 0.00 36.83 2.32
322 323 9.264719 CTGAAGACTGGCTTAAATTGAAAATTT 57.735 29.630 0.00 3.66 36.83 1.82
323 324 9.612066 TGAAGACTGGCTTAAATTGAAAATTTT 57.388 25.926 2.28 2.28 36.83 1.82
328 329 9.191995 ACTGGCTTAAATTGAAAATTTTAGTCG 57.808 29.630 2.75 8.06 28.39 4.18
346 347 5.599999 AGTCGACTTATCACTAGCCATTT 57.400 39.130 13.58 0.00 0.00 2.32
353 354 7.201732 CGACTTATCACTAGCCATTTCCAAATT 60.202 37.037 0.00 0.00 0.00 1.82
401 402 2.077687 AAATAGGGCAGCCATTGGAG 57.922 50.000 15.19 0.00 0.00 3.86
413 414 4.583489 CAGCCATTGGAGATGCTCTAAAAT 59.417 41.667 6.95 0.00 34.82 1.82
416 417 5.059161 CCATTGGAGATGCTCTAAAATCGA 58.941 41.667 0.00 0.00 34.82 3.59
437 438 6.110033 TCGATCCCGAAAAATACATCAAAGA 58.890 36.000 0.00 0.00 42.51 2.52
445 446 7.060633 CCGAAAAATACATCAAAGAGAAAACCG 59.939 37.037 0.00 0.00 0.00 4.44
539 540 1.001815 CGTGCAACCGAAAGATTTGGT 60.002 47.619 0.00 0.00 37.68 3.67
545 546 2.268298 ACCGAAAGATTTGGTCGATCG 58.732 47.619 9.36 9.36 38.60 3.69
548 549 2.029244 CGAAAGATTTGGTCGATCGGTG 59.971 50.000 16.41 0.00 36.67 4.94
560 561 2.546645 GATCGGTGCCGTCGTGGTAA 62.547 60.000 10.60 0.00 41.21 2.85
564 565 1.141591 GGTGCCGTCGTGGTAATACG 61.142 60.000 0.00 0.00 44.98 3.06
609 610 2.745884 TCGCTGCCCAACATTCCG 60.746 61.111 0.00 0.00 0.00 4.30
653 661 2.004489 GCGACGGTAGAGATTCGCG 61.004 63.158 0.00 0.00 46.37 5.87
656 664 0.930742 GACGGTAGAGATTCGCGCAG 60.931 60.000 8.75 0.00 0.00 5.18
657 665 1.355563 CGGTAGAGATTCGCGCAGA 59.644 57.895 8.75 2.49 0.00 4.26
659 667 1.482278 GGTAGAGATTCGCGCAGAAG 58.518 55.000 8.75 0.00 42.92 2.85
660 668 1.202313 GGTAGAGATTCGCGCAGAAGT 60.202 52.381 8.75 3.93 42.92 3.01
666 679 1.237285 ATTCGCGCAGAAGTTTGGCT 61.237 50.000 8.75 0.00 42.92 4.75
675 688 4.603535 AGTTTGGCTGGCCGGCTT 62.604 61.111 34.76 13.55 39.42 4.35
792 805 2.606449 CCCCGCCCCAATAATGGT 59.394 61.111 0.00 0.00 46.01 3.55
912 937 2.025727 GCCGAGCGCACGTACTAT 59.974 61.111 24.91 0.00 37.47 2.12
1010 1035 3.384532 CCAAGCCATGGCCACCAC 61.385 66.667 33.14 4.73 43.80 4.16
1756 1785 1.068333 CCGCATTCTTGTTCCACCTTG 60.068 52.381 0.00 0.00 0.00 3.61
1762 1791 3.328382 TCTTGTTCCACCTTGTATCCG 57.672 47.619 0.00 0.00 0.00 4.18
1793 1822 6.598753 TTCTTCTTTTCTTTCTGGTGTACG 57.401 37.500 0.00 0.00 0.00 3.67
1794 1823 5.667466 TCTTCTTTTCTTTCTGGTGTACGT 58.333 37.500 0.00 0.00 0.00 3.57
1950 2012 6.564557 TTTACGTTGGGAGGAGGTATTTAT 57.435 37.500 0.00 0.00 0.00 1.40
2053 2139 6.855763 ATTGTTTGGATATCTTTGCAAGGA 57.144 33.333 14.17 14.17 0.00 3.36
2062 2148 6.097412 GGATATCTTTGCAAGGATGAAAGGTT 59.903 38.462 28.69 8.08 30.88 3.50
2078 2164 6.068010 TGAAAGGTTGAACTATGACATGGTT 58.932 36.000 16.20 16.20 36.62 3.67
2103 2189 2.200373 TTTGGTCCTCCTAAAGCTGC 57.800 50.000 0.00 0.00 34.23 5.25
2136 2222 4.321718 AGCTCCGATTGTAATCATGATGG 58.678 43.478 9.46 4.28 35.11 3.51
2137 2223 3.120060 GCTCCGATTGTAATCATGATGGC 60.120 47.826 9.46 5.92 35.11 4.40
2144 2230 4.614555 TGTAATCATGATGGCGTTTGAC 57.385 40.909 9.46 0.00 0.00 3.18
2153 2239 5.794687 TGATGGCGTTTGACTAATACAAG 57.205 39.130 0.00 0.00 0.00 3.16
2154 2241 5.483811 TGATGGCGTTTGACTAATACAAGA 58.516 37.500 0.00 0.00 0.00 3.02
2271 2360 4.135153 CCCGGCCGTGTCTCTGAG 62.135 72.222 26.12 4.67 0.00 3.35
2272 2361 4.135153 CCGGCCGTGTCTCTGAGG 62.135 72.222 26.12 0.00 0.00 3.86
2277 2366 2.759783 CCGTGTCTCTGAGGCAATG 58.240 57.895 14.40 9.49 28.00 2.82
2278 2367 1.364626 CCGTGTCTCTGAGGCAATGC 61.365 60.000 14.40 0.00 28.00 3.56
2315 2404 3.994204 TTTTTAAAGTGGGGCGAACTC 57.006 42.857 0.00 0.00 0.00 3.01
2316 2405 2.943036 TTTAAAGTGGGGCGAACTCT 57.057 45.000 0.00 0.00 0.00 3.24
2317 2406 2.943036 TTAAAGTGGGGCGAACTCTT 57.057 45.000 0.00 0.00 0.00 2.85
2318 2407 4.354893 TTTAAAGTGGGGCGAACTCTTA 57.645 40.909 0.00 0.00 0.00 2.10
2319 2408 2.943036 AAAGTGGGGCGAACTCTTAA 57.057 45.000 0.00 0.00 0.00 1.85
2320 2409 2.474410 AAGTGGGGCGAACTCTTAAG 57.526 50.000 0.00 0.00 0.00 1.85
2321 2410 0.036294 AGTGGGGCGAACTCTTAAGC 60.036 55.000 0.00 0.00 0.00 3.09
2322 2411 0.321298 GTGGGGCGAACTCTTAAGCA 60.321 55.000 0.00 0.00 0.00 3.91
2323 2412 0.618458 TGGGGCGAACTCTTAAGCAT 59.382 50.000 0.00 0.00 0.00 3.79
2324 2413 1.834896 TGGGGCGAACTCTTAAGCATA 59.165 47.619 0.00 0.00 0.00 3.14
2325 2414 2.158957 TGGGGCGAACTCTTAAGCATAG 60.159 50.000 0.00 0.00 0.00 2.23
2326 2415 1.867865 GGGCGAACTCTTAAGCATAGC 59.132 52.381 0.00 0.00 0.00 2.97
2327 2416 2.483889 GGGCGAACTCTTAAGCATAGCT 60.484 50.000 0.00 0.00 42.56 3.32
2368 2457 9.862371 AAATAATTTAAATACACCGTGATTGCA 57.138 25.926 5.28 0.00 0.00 4.08
2371 2460 8.770438 AATTTAAATACACCGTGATTGCATTT 57.230 26.923 5.28 5.56 0.00 2.32
2372 2461 8.770438 ATTTAAATACACCGTGATTGCATTTT 57.230 26.923 5.28 0.00 0.00 1.82
2373 2462 8.594881 TTTAAATACACCGTGATTGCATTTTT 57.405 26.923 5.28 0.00 0.00 1.94
2391 2480 4.608948 TTTTTCAATTGCCGTACCCAAT 57.391 36.364 0.00 1.64 34.56 3.16
2392 2481 4.608948 TTTTCAATTGCCGTACCCAATT 57.391 36.364 11.38 11.38 42.02 2.32
2393 2482 5.723672 TTTTCAATTGCCGTACCCAATTA 57.276 34.783 15.00 3.29 40.00 1.40
2394 2483 5.723672 TTTCAATTGCCGTACCCAATTAA 57.276 34.783 15.00 7.72 40.00 1.40
2395 2484 5.923733 TTCAATTGCCGTACCCAATTAAT 57.076 34.783 15.00 0.00 40.00 1.40
2396 2485 5.923733 TCAATTGCCGTACCCAATTAATT 57.076 34.783 15.00 0.00 40.00 1.40
2397 2486 6.287589 TCAATTGCCGTACCCAATTAATTT 57.712 33.333 15.00 0.00 40.00 1.82
2398 2487 6.102663 TCAATTGCCGTACCCAATTAATTTG 58.897 36.000 15.00 0.00 40.00 2.32
2399 2488 5.923733 ATTGCCGTACCCAATTAATTTGA 57.076 34.783 0.00 0.00 37.53 2.69
2400 2489 5.723672 TTGCCGTACCCAATTAATTTGAA 57.276 34.783 0.00 0.00 37.53 2.69
2401 2490 5.317733 TGCCGTACCCAATTAATTTGAAG 57.682 39.130 0.00 0.00 37.53 3.02
2402 2491 5.010933 TGCCGTACCCAATTAATTTGAAGA 58.989 37.500 0.00 0.00 37.53 2.87
2403 2492 5.477291 TGCCGTACCCAATTAATTTGAAGAA 59.523 36.000 0.00 0.00 37.53 2.52
2404 2493 6.015350 TGCCGTACCCAATTAATTTGAAGAAA 60.015 34.615 0.00 0.00 37.53 2.52
2405 2494 6.309494 GCCGTACCCAATTAATTTGAAGAAAC 59.691 38.462 0.00 0.00 37.53 2.78
2406 2495 6.809689 CCGTACCCAATTAATTTGAAGAAACC 59.190 38.462 0.00 0.00 37.53 3.27
2407 2496 6.809689 CGTACCCAATTAATTTGAAGAAACCC 59.190 38.462 0.00 0.00 37.53 4.11
2408 2497 6.121776 ACCCAATTAATTTGAAGAAACCCC 57.878 37.500 0.00 0.00 37.53 4.95
2409 2498 5.175127 CCCAATTAATTTGAAGAAACCCCG 58.825 41.667 0.00 0.00 37.53 5.73
2410 2499 5.279758 CCCAATTAATTTGAAGAAACCCCGT 60.280 40.000 0.00 0.00 37.53 5.28
2411 2500 6.071278 CCCAATTAATTTGAAGAAACCCCGTA 60.071 38.462 0.00 0.00 37.53 4.02
2412 2501 7.379750 CCAATTAATTTGAAGAAACCCCGTAA 58.620 34.615 0.00 0.00 37.53 3.18
2413 2502 7.329962 CCAATTAATTTGAAGAAACCCCGTAAC 59.670 37.037 0.00 0.00 37.53 2.50
2414 2503 4.859304 AATTTGAAGAAACCCCGTAACC 57.141 40.909 0.00 0.00 0.00 2.85
2415 2504 3.294038 TTTGAAGAAACCCCGTAACCA 57.706 42.857 0.00 0.00 0.00 3.67
2416 2505 3.294038 TTGAAGAAACCCCGTAACCAA 57.706 42.857 0.00 0.00 0.00 3.67
2417 2506 2.853705 TGAAGAAACCCCGTAACCAAG 58.146 47.619 0.00 0.00 0.00 3.61
2418 2507 2.173143 TGAAGAAACCCCGTAACCAAGT 59.827 45.455 0.00 0.00 0.00 3.16
2419 2508 3.216800 GAAGAAACCCCGTAACCAAGTT 58.783 45.455 0.00 0.00 0.00 2.66
2420 2509 3.301794 AGAAACCCCGTAACCAAGTTT 57.698 42.857 0.00 0.00 33.55 2.66
2421 2510 2.953648 AGAAACCCCGTAACCAAGTTTG 59.046 45.455 0.00 0.00 31.14 2.93
2422 2511 2.440517 AACCCCGTAACCAAGTTTGT 57.559 45.000 0.00 0.00 0.00 2.83
2423 2512 1.971481 ACCCCGTAACCAAGTTTGTC 58.029 50.000 0.00 0.00 0.00 3.18
2424 2513 1.212441 ACCCCGTAACCAAGTTTGTCA 59.788 47.619 0.00 0.00 0.00 3.58
2425 2514 2.158579 ACCCCGTAACCAAGTTTGTCAT 60.159 45.455 0.00 0.00 0.00 3.06
2426 2515 2.486592 CCCCGTAACCAAGTTTGTCATC 59.513 50.000 0.00 0.00 0.00 2.92
2427 2516 2.486592 CCCGTAACCAAGTTTGTCATCC 59.513 50.000 0.00 0.00 0.00 3.51
2428 2517 3.142951 CCGTAACCAAGTTTGTCATCCA 58.857 45.455 0.00 0.00 0.00 3.41
2429 2518 3.756434 CCGTAACCAAGTTTGTCATCCAT 59.244 43.478 0.00 0.00 0.00 3.41
2430 2519 4.217550 CCGTAACCAAGTTTGTCATCCATT 59.782 41.667 0.00 0.00 0.00 3.16
2431 2520 5.390613 CGTAACCAAGTTTGTCATCCATTC 58.609 41.667 0.00 0.00 0.00 2.67
2432 2521 5.181245 CGTAACCAAGTTTGTCATCCATTCT 59.819 40.000 0.00 0.00 0.00 2.40
2433 2522 6.293955 CGTAACCAAGTTTGTCATCCATTCTT 60.294 38.462 0.00 0.00 0.00 2.52
2434 2523 6.484364 AACCAAGTTTGTCATCCATTCTTT 57.516 33.333 0.00 0.00 0.00 2.52
2435 2524 6.484364 ACCAAGTTTGTCATCCATTCTTTT 57.516 33.333 0.00 0.00 0.00 2.27
2436 2525 6.888105 ACCAAGTTTGTCATCCATTCTTTTT 58.112 32.000 0.00 0.00 0.00 1.94
2437 2526 6.762661 ACCAAGTTTGTCATCCATTCTTTTTG 59.237 34.615 0.00 0.00 0.00 2.44
2438 2527 6.985645 CCAAGTTTGTCATCCATTCTTTTTGA 59.014 34.615 0.00 0.00 0.00 2.69
2439 2528 7.495279 CCAAGTTTGTCATCCATTCTTTTTGAA 59.505 33.333 0.00 0.00 39.24 2.69
2440 2529 9.048446 CAAGTTTGTCATCCATTCTTTTTGAAT 57.952 29.630 0.00 0.00 45.52 2.57
2460 2549 9.770097 TTTGAATAATTTGAATTGCTTACCACA 57.230 25.926 0.00 0.00 0.00 4.17
2461 2550 9.941325 TTGAATAATTTGAATTGCTTACCACAT 57.059 25.926 0.00 0.00 0.00 3.21
2462 2551 9.368674 TGAATAATTTGAATTGCTTACCACATG 57.631 29.630 0.00 0.00 0.00 3.21
2463 2552 9.369904 GAATAATTTGAATTGCTTACCACATGT 57.630 29.630 0.00 0.00 0.00 3.21
2464 2553 8.706492 ATAATTTGAATTGCTTACCACATGTG 57.294 30.769 19.31 19.31 0.00 3.21
2465 2554 5.528043 TTTGAATTGCTTACCACATGTGT 57.472 34.783 23.79 14.29 0.00 3.72
2466 2555 4.764679 TGAATTGCTTACCACATGTGTC 57.235 40.909 23.79 11.92 0.00 3.67
2467 2556 4.140536 TGAATTGCTTACCACATGTGTCA 58.859 39.130 23.79 14.25 0.00 3.58
2468 2557 4.023279 TGAATTGCTTACCACATGTGTCAC 60.023 41.667 23.79 9.40 0.00 3.67
2469 2558 2.928801 TGCTTACCACATGTGTCACT 57.071 45.000 23.79 6.47 0.00 3.41
2470 2559 3.207265 TGCTTACCACATGTGTCACTT 57.793 42.857 23.79 5.85 0.00 3.16
2471 2560 2.877786 TGCTTACCACATGTGTCACTTG 59.122 45.455 23.79 15.39 0.00 3.16
2472 2561 2.226437 GCTTACCACATGTGTCACTTGG 59.774 50.000 23.79 16.74 0.00 3.61
2473 2562 3.476552 CTTACCACATGTGTCACTTGGT 58.523 45.455 23.79 21.04 43.17 3.67
2474 2563 1.679139 ACCACATGTGTCACTTGGTG 58.321 50.000 23.79 15.82 39.17 4.17
2475 2564 0.311790 CCACATGTGTCACTTGGTGC 59.688 55.000 23.79 0.00 32.98 5.01
2476 2565 0.311790 CACATGTGTCACTTGGTGCC 59.688 55.000 18.03 0.00 32.98 5.01
2477 2566 0.106769 ACATGTGTCACTTGGTGCCA 60.107 50.000 19.70 0.00 32.98 4.92
2478 2567 1.250328 CATGTGTCACTTGGTGCCAT 58.750 50.000 10.33 0.00 32.98 4.40
2479 2568 1.200716 CATGTGTCACTTGGTGCCATC 59.799 52.381 10.33 0.00 32.98 3.51
2480 2569 0.537143 TGTGTCACTTGGTGCCATCC 60.537 55.000 4.27 0.00 32.98 3.51
2481 2570 0.537143 GTGTCACTTGGTGCCATCCA 60.537 55.000 0.00 0.00 32.98 3.41
2482 2571 0.405198 TGTCACTTGGTGCCATCCAT 59.595 50.000 0.00 0.00 37.33 3.41
2483 2572 1.203038 TGTCACTTGGTGCCATCCATT 60.203 47.619 0.00 0.00 37.33 3.16
2484 2573 1.474077 GTCACTTGGTGCCATCCATTC 59.526 52.381 0.00 0.00 37.33 2.67
2485 2574 0.452987 CACTTGGTGCCATCCATTCG 59.547 55.000 0.00 0.00 37.33 3.34
2486 2575 0.327924 ACTTGGTGCCATCCATTCGA 59.672 50.000 0.00 0.00 37.33 3.71
2487 2576 1.064463 ACTTGGTGCCATCCATTCGAT 60.064 47.619 0.00 0.00 37.33 3.59
2488 2577 1.605710 CTTGGTGCCATCCATTCGATC 59.394 52.381 0.00 0.00 37.33 3.69
2489 2578 0.545646 TGGTGCCATCCATTCGATCA 59.454 50.000 0.00 0.00 31.96 2.92
2490 2579 1.233019 GGTGCCATCCATTCGATCAG 58.767 55.000 0.00 0.00 0.00 2.90
2491 2580 1.233019 GTGCCATCCATTCGATCAGG 58.767 55.000 0.00 0.00 0.00 3.86
2492 2581 0.839277 TGCCATCCATTCGATCAGGT 59.161 50.000 0.00 0.00 0.00 4.00
2493 2582 1.202687 TGCCATCCATTCGATCAGGTC 60.203 52.381 0.00 0.00 0.00 3.85
2494 2583 1.071385 GCCATCCATTCGATCAGGTCT 59.929 52.381 0.00 0.00 0.00 3.85
2495 2584 2.300152 GCCATCCATTCGATCAGGTCTA 59.700 50.000 0.00 0.00 0.00 2.59
2496 2585 3.244215 GCCATCCATTCGATCAGGTCTAA 60.244 47.826 0.00 0.00 0.00 2.10
2497 2586 4.743651 GCCATCCATTCGATCAGGTCTAAA 60.744 45.833 0.00 0.00 0.00 1.85
2498 2587 5.368145 CCATCCATTCGATCAGGTCTAAAA 58.632 41.667 0.00 0.00 0.00 1.52
2499 2588 5.822519 CCATCCATTCGATCAGGTCTAAAAA 59.177 40.000 0.00 0.00 0.00 1.94
2500 2589 6.017605 CCATCCATTCGATCAGGTCTAAAAAG 60.018 42.308 0.00 0.00 0.00 2.27
2501 2590 5.428253 TCCATTCGATCAGGTCTAAAAAGG 58.572 41.667 0.00 0.00 0.00 3.11
2502 2591 5.188948 TCCATTCGATCAGGTCTAAAAAGGA 59.811 40.000 0.00 0.00 0.00 3.36
2503 2592 5.880332 CCATTCGATCAGGTCTAAAAAGGAA 59.120 40.000 0.00 0.00 0.00 3.36
2504 2593 6.374333 CCATTCGATCAGGTCTAAAAAGGAAA 59.626 38.462 0.00 0.00 0.00 3.13
2505 2594 6.796705 TTCGATCAGGTCTAAAAAGGAAAC 57.203 37.500 0.00 0.00 0.00 2.78
2506 2595 5.860611 TCGATCAGGTCTAAAAAGGAAACA 58.139 37.500 0.00 0.00 0.00 2.83
2507 2596 5.932303 TCGATCAGGTCTAAAAAGGAAACAG 59.068 40.000 0.00 0.00 0.00 3.16
2508 2597 5.701290 CGATCAGGTCTAAAAAGGAAACAGT 59.299 40.000 0.00 0.00 0.00 3.55
2509 2598 6.128526 CGATCAGGTCTAAAAAGGAAACAGTC 60.129 42.308 0.00 0.00 0.00 3.51
2510 2599 5.054477 TCAGGTCTAAAAAGGAAACAGTCG 58.946 41.667 0.00 0.00 0.00 4.18
2511 2600 5.054477 CAGGTCTAAAAAGGAAACAGTCGA 58.946 41.667 0.00 0.00 0.00 4.20
2512 2601 5.526111 CAGGTCTAAAAAGGAAACAGTCGAA 59.474 40.000 0.00 0.00 0.00 3.71
2513 2602 5.758784 AGGTCTAAAAAGGAAACAGTCGAAG 59.241 40.000 0.00 0.00 0.00 3.79
2514 2603 5.441543 GTCTAAAAAGGAAACAGTCGAAGC 58.558 41.667 0.00 0.00 0.00 3.86
2515 2604 5.007332 GTCTAAAAAGGAAACAGTCGAAGCA 59.993 40.000 0.00 0.00 0.00 3.91
2516 2605 4.918810 AAAAAGGAAACAGTCGAAGCAT 57.081 36.364 0.00 0.00 0.00 3.79
2517 2606 4.918810 AAAAGGAAACAGTCGAAGCATT 57.081 36.364 0.00 0.00 0.00 3.56
2518 2607 6.385649 AAAAAGGAAACAGTCGAAGCATTA 57.614 33.333 0.00 0.00 0.00 1.90
2519 2608 6.385649 AAAAGGAAACAGTCGAAGCATTAA 57.614 33.333 0.00 0.00 0.00 1.40
2520 2609 6.575162 AAAGGAAACAGTCGAAGCATTAAT 57.425 33.333 0.00 0.00 0.00 1.40
2521 2610 5.803020 AGGAAACAGTCGAAGCATTAATC 57.197 39.130 0.00 0.00 0.00 1.75
2522 2611 5.491982 AGGAAACAGTCGAAGCATTAATCT 58.508 37.500 0.00 0.00 0.00 2.40
2523 2612 5.940470 AGGAAACAGTCGAAGCATTAATCTT 59.060 36.000 0.00 0.00 0.00 2.40
2524 2613 6.431234 AGGAAACAGTCGAAGCATTAATCTTT 59.569 34.615 0.00 0.00 0.00 2.52
2525 2614 7.606456 AGGAAACAGTCGAAGCATTAATCTTTA 59.394 33.333 0.00 0.00 0.00 1.85
2526 2615 8.398665 GGAAACAGTCGAAGCATTAATCTTTAT 58.601 33.333 0.00 0.00 0.00 1.40
2527 2616 9.774742 GAAACAGTCGAAGCATTAATCTTTATT 57.225 29.630 0.00 0.00 0.00 1.40
2528 2617 9.774742 AAACAGTCGAAGCATTAATCTTTATTC 57.225 29.630 0.00 0.00 0.00 1.75
2529 2618 8.492673 ACAGTCGAAGCATTAATCTTTATTCA 57.507 30.769 0.00 0.00 0.00 2.57
2530 2619 9.113838 ACAGTCGAAGCATTAATCTTTATTCAT 57.886 29.630 0.00 0.00 0.00 2.57
2531 2620 9.591404 CAGTCGAAGCATTAATCTTTATTCATC 57.409 33.333 0.00 0.00 0.00 2.92
2532 2621 9.330063 AGTCGAAGCATTAATCTTTATTCATCA 57.670 29.630 0.00 0.00 0.00 3.07
2533 2622 9.374960 GTCGAAGCATTAATCTTTATTCATCAC 57.625 33.333 0.00 0.00 0.00 3.06
2534 2623 9.108284 TCGAAGCATTAATCTTTATTCATCACA 57.892 29.630 0.00 0.00 0.00 3.58
2535 2624 9.720667 CGAAGCATTAATCTTTATTCATCACAA 57.279 29.630 0.00 0.00 0.00 3.33
2558 2647 5.587388 AAAATCCCACTAATCACTGCATG 57.413 39.130 0.00 0.00 0.00 4.06
2559 2648 2.715749 TCCCACTAATCACTGCATGG 57.284 50.000 0.00 0.00 0.00 3.66
2560 2649 1.915489 TCCCACTAATCACTGCATGGT 59.085 47.619 0.00 0.00 0.00 3.55
2561 2650 3.111484 TCCCACTAATCACTGCATGGTA 58.889 45.455 0.00 0.00 0.00 3.25
2562 2651 3.134623 TCCCACTAATCACTGCATGGTAG 59.865 47.826 0.00 0.00 0.00 3.18
2563 2652 3.118261 CCCACTAATCACTGCATGGTAGT 60.118 47.826 0.00 0.00 32.70 2.73
2564 2653 4.517285 CCACTAATCACTGCATGGTAGTT 58.483 43.478 0.00 0.00 31.09 2.24
2565 2654 5.396324 CCCACTAATCACTGCATGGTAGTTA 60.396 44.000 0.00 0.00 31.09 2.24
2566 2655 6.291377 CCACTAATCACTGCATGGTAGTTAT 58.709 40.000 0.00 0.00 31.09 1.89
2567 2656 7.441836 CCACTAATCACTGCATGGTAGTTATA 58.558 38.462 0.00 0.00 31.09 0.98
2568 2657 7.600375 CCACTAATCACTGCATGGTAGTTATAG 59.400 40.741 0.00 0.00 31.09 1.31
2569 2658 8.360390 CACTAATCACTGCATGGTAGTTATAGA 58.640 37.037 0.00 0.00 31.09 1.98
2570 2659 9.094578 ACTAATCACTGCATGGTAGTTATAGAT 57.905 33.333 0.00 0.00 29.92 1.98
2571 2660 9.935241 CTAATCACTGCATGGTAGTTATAGATT 57.065 33.333 0.00 0.00 0.00 2.40
2572 2661 8.613060 AATCACTGCATGGTAGTTATAGATTG 57.387 34.615 0.00 0.00 0.00 2.67
2573 2662 7.124573 TCACTGCATGGTAGTTATAGATTGT 57.875 36.000 0.00 0.00 0.00 2.71
2574 2663 6.986231 TCACTGCATGGTAGTTATAGATTGTG 59.014 38.462 0.00 0.00 0.00 3.33
2575 2664 6.986231 CACTGCATGGTAGTTATAGATTGTGA 59.014 38.462 0.00 0.00 0.00 3.58
2576 2665 7.170489 CACTGCATGGTAGTTATAGATTGTGAG 59.830 40.741 0.00 0.00 0.00 3.51
2577 2666 7.069950 ACTGCATGGTAGTTATAGATTGTGAGA 59.930 37.037 0.00 0.00 0.00 3.27
2578 2667 7.210174 TGCATGGTAGTTATAGATTGTGAGAC 58.790 38.462 0.00 0.00 0.00 3.36
2579 2668 6.647067 GCATGGTAGTTATAGATTGTGAGACC 59.353 42.308 0.00 0.00 0.00 3.85
2580 2669 7.686859 GCATGGTAGTTATAGATTGTGAGACCA 60.687 40.741 0.00 0.00 37.62 4.02
2581 2670 7.914427 TGGTAGTTATAGATTGTGAGACCAT 57.086 36.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.239525 GTCCTTTGTGTCTTCATTGTAGCTT 59.760 40.000 0.00 0.00 0.00 3.74
1 2 4.757149 GTCCTTTGTGTCTTCATTGTAGCT 59.243 41.667 0.00 0.00 0.00 3.32
2 3 4.757149 AGTCCTTTGTGTCTTCATTGTAGC 59.243 41.667 0.00 0.00 0.00 3.58
3 4 6.591834 CCTAGTCCTTTGTGTCTTCATTGTAG 59.408 42.308 0.00 0.00 0.00 2.74
4 5 6.269077 TCCTAGTCCTTTGTGTCTTCATTGTA 59.731 38.462 0.00 0.00 0.00 2.41
5 6 5.071788 TCCTAGTCCTTTGTGTCTTCATTGT 59.928 40.000 0.00 0.00 0.00 2.71
6 7 5.551233 TCCTAGTCCTTTGTGTCTTCATTG 58.449 41.667 0.00 0.00 0.00 2.82
7 8 5.544176 TCTCCTAGTCCTTTGTGTCTTCATT 59.456 40.000 0.00 0.00 0.00 2.57
8 9 5.046950 GTCTCCTAGTCCTTTGTGTCTTCAT 60.047 44.000 0.00 0.00 0.00 2.57
9 10 4.281182 GTCTCCTAGTCCTTTGTGTCTTCA 59.719 45.833 0.00 0.00 0.00 3.02
10 11 4.281182 TGTCTCCTAGTCCTTTGTGTCTTC 59.719 45.833 0.00 0.00 0.00 2.87
11 12 4.223953 TGTCTCCTAGTCCTTTGTGTCTT 58.776 43.478 0.00 0.00 0.00 3.01
12 13 3.845860 TGTCTCCTAGTCCTTTGTGTCT 58.154 45.455 0.00 0.00 0.00 3.41
13 14 4.202223 TGTTGTCTCCTAGTCCTTTGTGTC 60.202 45.833 0.00 0.00 0.00 3.67
14 15 3.709653 TGTTGTCTCCTAGTCCTTTGTGT 59.290 43.478 0.00 0.00 0.00 3.72
15 16 4.336889 TGTTGTCTCCTAGTCCTTTGTG 57.663 45.455 0.00 0.00 0.00 3.33
16 17 4.654262 TCTTGTTGTCTCCTAGTCCTTTGT 59.346 41.667 0.00 0.00 0.00 2.83
17 18 5.215252 TCTTGTTGTCTCCTAGTCCTTTG 57.785 43.478 0.00 0.00 0.00 2.77
18 19 5.888982 TTCTTGTTGTCTCCTAGTCCTTT 57.111 39.130 0.00 0.00 0.00 3.11
19 20 5.888982 TTTCTTGTTGTCTCCTAGTCCTT 57.111 39.130 0.00 0.00 0.00 3.36
20 21 5.888982 TTTTCTTGTTGTCTCCTAGTCCT 57.111 39.130 0.00 0.00 0.00 3.85
21 22 5.644206 GGATTTTCTTGTTGTCTCCTAGTCC 59.356 44.000 0.00 0.00 0.00 3.85
22 23 6.231211 TGGATTTTCTTGTTGTCTCCTAGTC 58.769 40.000 0.00 0.00 0.00 2.59
23 24 6.187727 TGGATTTTCTTGTTGTCTCCTAGT 57.812 37.500 0.00 0.00 0.00 2.57
24 25 7.445402 TCTTTGGATTTTCTTGTTGTCTCCTAG 59.555 37.037 0.00 0.00 0.00 3.02
25 26 7.287061 TCTTTGGATTTTCTTGTTGTCTCCTA 58.713 34.615 0.00 0.00 0.00 2.94
26 27 6.129179 TCTTTGGATTTTCTTGTTGTCTCCT 58.871 36.000 0.00 0.00 0.00 3.69
27 28 6.391227 TCTTTGGATTTTCTTGTTGTCTCC 57.609 37.500 0.00 0.00 0.00 3.71
28 29 6.798959 CGATCTTTGGATTTTCTTGTTGTCTC 59.201 38.462 0.00 0.00 31.46 3.36
29 30 6.486657 TCGATCTTTGGATTTTCTTGTTGTCT 59.513 34.615 0.00 0.00 31.46 3.41
30 31 6.668323 TCGATCTTTGGATTTTCTTGTTGTC 58.332 36.000 0.00 0.00 31.46 3.18
31 32 6.633500 TCGATCTTTGGATTTTCTTGTTGT 57.367 33.333 0.00 0.00 31.46 3.32
32 33 6.034256 GCATCGATCTTTGGATTTTCTTGTTG 59.966 38.462 0.00 0.00 31.46 3.33
33 34 6.095377 GCATCGATCTTTGGATTTTCTTGTT 58.905 36.000 0.00 0.00 31.46 2.83
34 35 5.183713 TGCATCGATCTTTGGATTTTCTTGT 59.816 36.000 0.00 0.00 31.46 3.16
35 36 5.643664 TGCATCGATCTTTGGATTTTCTTG 58.356 37.500 0.00 0.00 31.46 3.02
36 37 5.902613 TGCATCGATCTTTGGATTTTCTT 57.097 34.783 0.00 0.00 31.46 2.52
37 38 5.416952 ACTTGCATCGATCTTTGGATTTTCT 59.583 36.000 0.00 0.00 31.46 2.52
38 39 5.644644 ACTTGCATCGATCTTTGGATTTTC 58.355 37.500 0.00 0.00 31.46 2.29
39 40 5.183713 TGACTTGCATCGATCTTTGGATTTT 59.816 36.000 0.00 0.00 31.46 1.82
40 41 4.701651 TGACTTGCATCGATCTTTGGATTT 59.298 37.500 0.00 0.00 31.46 2.17
41 42 4.264253 TGACTTGCATCGATCTTTGGATT 58.736 39.130 0.00 0.00 31.46 3.01
42 43 3.877559 TGACTTGCATCGATCTTTGGAT 58.122 40.909 0.00 0.00 34.45 3.41
43 44 3.333029 TGACTTGCATCGATCTTTGGA 57.667 42.857 0.00 0.00 0.00 3.53
44 45 3.686241 TCTTGACTTGCATCGATCTTTGG 59.314 43.478 0.00 0.00 0.00 3.28
45 46 4.152938 TGTCTTGACTTGCATCGATCTTTG 59.847 41.667 0.00 0.00 0.00 2.77
46 47 4.318332 TGTCTTGACTTGCATCGATCTTT 58.682 39.130 0.00 0.00 0.00 2.52
47 48 3.930336 TGTCTTGACTTGCATCGATCTT 58.070 40.909 0.00 0.00 0.00 2.40
48 49 3.599730 TGTCTTGACTTGCATCGATCT 57.400 42.857 0.00 0.00 0.00 2.75
49 50 4.389992 TCTTTGTCTTGACTTGCATCGATC 59.610 41.667 0.00 0.00 0.00 3.69
50 51 4.318332 TCTTTGTCTTGACTTGCATCGAT 58.682 39.130 0.00 0.00 0.00 3.59
51 52 3.727726 TCTTTGTCTTGACTTGCATCGA 58.272 40.909 2.35 0.00 0.00 3.59
52 53 4.212004 TCTTCTTTGTCTTGACTTGCATCG 59.788 41.667 2.35 0.00 0.00 3.84
53 54 5.679734 TCTTCTTTGTCTTGACTTGCATC 57.320 39.130 2.35 0.00 0.00 3.91
54 55 7.750229 TTATCTTCTTTGTCTTGACTTGCAT 57.250 32.000 2.35 0.00 0.00 3.96
55 56 7.566760 TTTATCTTCTTTGTCTTGACTTGCA 57.433 32.000 2.35 0.00 0.00 4.08
56 57 7.061557 GCATTTATCTTCTTTGTCTTGACTTGC 59.938 37.037 2.35 0.00 0.00 4.01
57 58 7.540055 GGCATTTATCTTCTTTGTCTTGACTTG 59.460 37.037 2.35 0.00 0.00 3.16
58 59 7.573843 CGGCATTTATCTTCTTTGTCTTGACTT 60.574 37.037 2.35 0.00 0.00 3.01
59 60 6.128172 CGGCATTTATCTTCTTTGTCTTGACT 60.128 38.462 2.35 0.00 0.00 3.41
60 61 6.024049 CGGCATTTATCTTCTTTGTCTTGAC 58.976 40.000 0.00 0.00 0.00 3.18
61 62 5.391950 GCGGCATTTATCTTCTTTGTCTTGA 60.392 40.000 0.00 0.00 0.00 3.02
62 63 4.795278 GCGGCATTTATCTTCTTTGTCTTG 59.205 41.667 0.00 0.00 0.00 3.02
63 64 4.458989 TGCGGCATTTATCTTCTTTGTCTT 59.541 37.500 0.00 0.00 0.00 3.01
64 65 4.009675 TGCGGCATTTATCTTCTTTGTCT 58.990 39.130 0.00 0.00 0.00 3.41
65 66 4.355543 TGCGGCATTTATCTTCTTTGTC 57.644 40.909 0.00 0.00 0.00 3.18
66 67 4.782019 TTGCGGCATTTATCTTCTTTGT 57.218 36.364 2.28 0.00 0.00 2.83
67 68 6.074676 GCTTATTGCGGCATTTATCTTCTTTG 60.075 38.462 2.28 0.00 0.00 2.77
68 69 5.979517 GCTTATTGCGGCATTTATCTTCTTT 59.020 36.000 2.28 0.00 0.00 2.52
69 70 5.067674 TGCTTATTGCGGCATTTATCTTCTT 59.932 36.000 2.28 0.00 46.63 2.52
70 71 4.580167 TGCTTATTGCGGCATTTATCTTCT 59.420 37.500 2.28 0.00 46.63 2.85
71 72 4.676924 GTGCTTATTGCGGCATTTATCTTC 59.323 41.667 2.28 0.00 46.63 2.87
72 73 4.097741 TGTGCTTATTGCGGCATTTATCTT 59.902 37.500 2.28 0.00 46.63 2.40
73 74 3.631686 TGTGCTTATTGCGGCATTTATCT 59.368 39.130 2.28 0.00 46.63 1.98
74 75 3.963665 TGTGCTTATTGCGGCATTTATC 58.036 40.909 2.28 0.00 46.63 1.75
75 76 4.142182 ACTTGTGCTTATTGCGGCATTTAT 60.142 37.500 2.28 0.00 46.63 1.40
76 77 3.192422 ACTTGTGCTTATTGCGGCATTTA 59.808 39.130 2.28 0.00 46.63 1.40
77 78 2.029110 ACTTGTGCTTATTGCGGCATTT 60.029 40.909 2.28 0.00 46.63 2.32
78 79 1.545582 ACTTGTGCTTATTGCGGCATT 59.454 42.857 2.28 2.52 46.63 3.56
79 80 1.135315 CACTTGTGCTTATTGCGGCAT 60.135 47.619 2.28 0.00 46.63 4.40
80 81 0.240678 CACTTGTGCTTATTGCGGCA 59.759 50.000 0.00 0.00 46.63 5.69
81 82 1.072666 GCACTTGTGCTTATTGCGGC 61.073 55.000 17.36 0.00 46.63 6.53
82 83 0.240678 TGCACTTGTGCTTATTGCGG 59.759 50.000 23.53 0.00 46.63 5.69
83 84 2.049077 TTGCACTTGTGCTTATTGCG 57.951 45.000 23.53 0.00 46.63 4.85
84 85 4.792528 TTTTTGCACTTGTGCTTATTGC 57.207 36.364 23.53 0.00 43.25 3.56
102 103 5.936956 TGTGCAAAAGTGACTTTGGATTTTT 59.063 32.000 16.34 0.00 38.63 1.94
103 104 5.486526 TGTGCAAAAGTGACTTTGGATTTT 58.513 33.333 16.34 0.00 38.63 1.82
104 105 5.083533 TGTGCAAAAGTGACTTTGGATTT 57.916 34.783 16.34 0.00 38.63 2.17
105 106 4.734398 TGTGCAAAAGTGACTTTGGATT 57.266 36.364 16.34 0.00 38.63 3.01
106 107 4.734398 TTGTGCAAAAGTGACTTTGGAT 57.266 36.364 16.34 0.00 38.63 3.41
107 108 4.734398 ATTGTGCAAAAGTGACTTTGGA 57.266 36.364 16.34 7.06 36.89 3.53
108 109 7.481275 AATAATTGTGCAAAAGTGACTTTGG 57.519 32.000 11.83 9.87 36.89 3.28
109 110 9.462174 TCTAATAATTGTGCAAAAGTGACTTTG 57.538 29.630 11.83 7.17 38.97 2.77
137 138 8.980481 TTCTCTTCACTCTTCTTTTGGTATTT 57.020 30.769 0.00 0.00 0.00 1.40
138 139 8.980481 TTTCTCTTCACTCTTCTTTTGGTATT 57.020 30.769 0.00 0.00 0.00 1.89
139 140 8.980481 TTTTCTCTTCACTCTTCTTTTGGTAT 57.020 30.769 0.00 0.00 0.00 2.73
140 141 8.047310 ACTTTTCTCTTCACTCTTCTTTTGGTA 58.953 33.333 0.00 0.00 0.00 3.25
141 142 6.887002 ACTTTTCTCTTCACTCTTCTTTTGGT 59.113 34.615 0.00 0.00 0.00 3.67
142 143 7.326968 ACTTTTCTCTTCACTCTTCTTTTGG 57.673 36.000 0.00 0.00 0.00 3.28
143 144 9.631452 AAAACTTTTCTCTTCACTCTTCTTTTG 57.369 29.630 0.00 0.00 0.00 2.44
148 149 9.587461 CGATAAAAACTTTTCTCTTCACTCTTC 57.413 33.333 0.00 0.00 0.00 2.87
149 150 8.560374 CCGATAAAAACTTTTCTCTTCACTCTT 58.440 33.333 0.00 0.00 0.00 2.85
150 151 7.308049 GCCGATAAAAACTTTTCTCTTCACTCT 60.308 37.037 0.00 0.00 0.00 3.24
151 152 6.797513 GCCGATAAAAACTTTTCTCTTCACTC 59.202 38.462 0.00 0.00 0.00 3.51
152 153 6.486993 AGCCGATAAAAACTTTTCTCTTCACT 59.513 34.615 0.00 0.00 0.00 3.41
153 154 6.669278 AGCCGATAAAAACTTTTCTCTTCAC 58.331 36.000 0.00 0.00 0.00 3.18
154 155 6.877611 AGCCGATAAAAACTTTTCTCTTCA 57.122 33.333 0.00 0.00 0.00 3.02
155 156 8.504815 AGTTAGCCGATAAAAACTTTTCTCTTC 58.495 33.333 0.00 0.00 0.00 2.87
156 157 8.392372 AGTTAGCCGATAAAAACTTTTCTCTT 57.608 30.769 0.00 0.00 0.00 2.85
157 158 7.981102 AGTTAGCCGATAAAAACTTTTCTCT 57.019 32.000 0.00 0.00 0.00 3.10
160 161 9.285770 CCATTAGTTAGCCGATAAAAACTTTTC 57.714 33.333 0.00 0.00 34.23 2.29
161 162 9.016438 TCCATTAGTTAGCCGATAAAAACTTTT 57.984 29.630 0.00 0.00 34.23 2.27
162 163 8.570068 TCCATTAGTTAGCCGATAAAAACTTT 57.430 30.769 0.00 0.00 34.23 2.66
163 164 8.570068 TTCCATTAGTTAGCCGATAAAAACTT 57.430 30.769 0.00 0.00 34.23 2.66
164 165 8.570068 TTTCCATTAGTTAGCCGATAAAAACT 57.430 30.769 0.00 0.00 36.26 2.66
165 166 9.285770 CTTTTCCATTAGTTAGCCGATAAAAAC 57.714 33.333 0.00 0.00 0.00 2.43
166 167 9.016438 ACTTTTCCATTAGTTAGCCGATAAAAA 57.984 29.630 0.00 0.00 0.00 1.94
167 168 8.570068 ACTTTTCCATTAGTTAGCCGATAAAA 57.430 30.769 0.00 0.00 0.00 1.52
168 169 9.841295 ATACTTTTCCATTAGTTAGCCGATAAA 57.159 29.630 0.00 0.00 0.00 1.40
169 170 9.485206 GATACTTTTCCATTAGTTAGCCGATAA 57.515 33.333 0.00 0.00 0.00 1.75
170 171 8.644216 TGATACTTTTCCATTAGTTAGCCGATA 58.356 33.333 0.00 0.00 0.00 2.92
171 172 7.506114 TGATACTTTTCCATTAGTTAGCCGAT 58.494 34.615 0.00 0.00 0.00 4.18
172 173 6.880484 TGATACTTTTCCATTAGTTAGCCGA 58.120 36.000 0.00 0.00 0.00 5.54
173 174 7.494625 TCTTGATACTTTTCCATTAGTTAGCCG 59.505 37.037 0.00 0.00 0.00 5.52
174 175 8.732746 TCTTGATACTTTTCCATTAGTTAGCC 57.267 34.615 0.00 0.00 0.00 3.93
178 179 9.178758 GGTGATCTTGATACTTTTCCATTAGTT 57.821 33.333 0.00 0.00 0.00 2.24
179 180 7.775561 GGGTGATCTTGATACTTTTCCATTAGT 59.224 37.037 0.00 0.00 0.00 2.24
180 181 7.229506 GGGGTGATCTTGATACTTTTCCATTAG 59.770 40.741 0.00 0.00 0.00 1.73
181 182 7.060421 GGGGTGATCTTGATACTTTTCCATTA 58.940 38.462 0.00 0.00 0.00 1.90
182 183 5.893824 GGGGTGATCTTGATACTTTTCCATT 59.106 40.000 0.00 0.00 0.00 3.16
183 184 5.449553 GGGGTGATCTTGATACTTTTCCAT 58.550 41.667 0.00 0.00 0.00 3.41
184 185 4.325030 GGGGGTGATCTTGATACTTTTCCA 60.325 45.833 0.00 0.00 0.00 3.53
185 186 4.079730 AGGGGGTGATCTTGATACTTTTCC 60.080 45.833 0.00 0.00 0.00 3.13
186 187 5.117406 AGGGGGTGATCTTGATACTTTTC 57.883 43.478 0.00 0.00 0.00 2.29
187 188 5.132816 CCTAGGGGGTGATCTTGATACTTTT 59.867 44.000 0.00 0.00 0.00 2.27
188 189 4.660771 CCTAGGGGGTGATCTTGATACTTT 59.339 45.833 0.00 0.00 0.00 2.66
189 190 4.235372 CCTAGGGGGTGATCTTGATACTT 58.765 47.826 0.00 0.00 0.00 2.24
190 191 3.863086 CCTAGGGGGTGATCTTGATACT 58.137 50.000 0.00 0.00 0.00 2.12
191 192 2.303311 GCCTAGGGGGTGATCTTGATAC 59.697 54.545 11.72 0.00 37.43 2.24
192 193 2.621070 GCCTAGGGGGTGATCTTGATA 58.379 52.381 11.72 0.00 37.43 2.15
193 194 1.439543 GCCTAGGGGGTGATCTTGAT 58.560 55.000 11.72 0.00 37.43 2.57
194 195 2.930935 GCCTAGGGGGTGATCTTGA 58.069 57.895 11.72 0.00 37.43 3.02
202 203 4.043100 GGTTTGCGCCTAGGGGGT 62.043 66.667 25.83 0.00 37.97 4.95
203 204 4.815108 GGGTTTGCGCCTAGGGGG 62.815 72.222 25.83 9.14 38.76 5.40
205 206 4.090588 TCGGGTTTGCGCCTAGGG 62.091 66.667 11.72 1.58 0.00 3.53
206 207 2.511600 CTCGGGTTTGCGCCTAGG 60.512 66.667 4.18 3.67 0.00 3.02
207 208 2.311688 ATCCTCGGGTTTGCGCCTAG 62.312 60.000 4.18 0.00 0.00 3.02
208 209 2.306255 GATCCTCGGGTTTGCGCCTA 62.306 60.000 4.18 0.00 0.00 3.93
209 210 3.682292 GATCCTCGGGTTTGCGCCT 62.682 63.158 4.18 0.00 0.00 5.52
210 211 3.202706 GATCCTCGGGTTTGCGCC 61.203 66.667 4.18 0.00 0.00 6.53
211 212 3.564027 CGATCCTCGGGTTTGCGC 61.564 66.667 0.00 0.00 36.00 6.09
220 221 1.948104 TTTGCCAATACCGATCCTCG 58.052 50.000 0.00 0.00 40.07 4.63
221 222 3.882888 TCATTTTGCCAATACCGATCCTC 59.117 43.478 0.00 0.00 0.00 3.71
222 223 3.897239 TCATTTTGCCAATACCGATCCT 58.103 40.909 0.00 0.00 0.00 3.24
223 224 4.647424 TTCATTTTGCCAATACCGATCC 57.353 40.909 0.00 0.00 0.00 3.36
224 225 7.492344 AGAATTTTCATTTTGCCAATACCGATC 59.508 33.333 0.00 0.00 0.00 3.69
225 226 7.330262 AGAATTTTCATTTTGCCAATACCGAT 58.670 30.769 0.00 0.00 0.00 4.18
226 227 6.696411 AGAATTTTCATTTTGCCAATACCGA 58.304 32.000 0.00 0.00 0.00 4.69
227 228 6.966435 AGAATTTTCATTTTGCCAATACCG 57.034 33.333 0.00 0.00 0.00 4.02
228 229 8.882736 CCTTAGAATTTTCATTTTGCCAATACC 58.117 33.333 0.00 0.00 0.00 2.73
229 230 9.435688 ACCTTAGAATTTTCATTTTGCCAATAC 57.564 29.630 0.00 0.00 0.00 1.89
230 231 9.434420 CACCTTAGAATTTTCATTTTGCCAATA 57.566 29.630 0.00 0.00 0.00 1.90
231 232 7.391275 CCACCTTAGAATTTTCATTTTGCCAAT 59.609 33.333 0.00 0.00 0.00 3.16
232 233 6.709846 CCACCTTAGAATTTTCATTTTGCCAA 59.290 34.615 0.00 0.00 0.00 4.52
233 234 6.183361 ACCACCTTAGAATTTTCATTTTGCCA 60.183 34.615 0.00 0.00 0.00 4.92
234 235 6.230472 ACCACCTTAGAATTTTCATTTTGCC 58.770 36.000 0.00 0.00 0.00 4.52
235 236 7.728847 AACCACCTTAGAATTTTCATTTTGC 57.271 32.000 0.00 0.00 0.00 3.68
236 237 8.558700 CCAAACCACCTTAGAATTTTCATTTTG 58.441 33.333 0.00 0.00 0.00 2.44
237 238 8.490311 TCCAAACCACCTTAGAATTTTCATTTT 58.510 29.630 0.00 0.00 0.00 1.82
238 239 8.028652 TCCAAACCACCTTAGAATTTTCATTT 57.971 30.769 0.00 0.00 0.00 2.32
239 240 7.610580 TCCAAACCACCTTAGAATTTTCATT 57.389 32.000 0.00 0.00 0.00 2.57
240 241 7.290014 ACTTCCAAACCACCTTAGAATTTTCAT 59.710 33.333 0.00 0.00 0.00 2.57
241 242 6.609616 ACTTCCAAACCACCTTAGAATTTTCA 59.390 34.615 0.00 0.00 0.00 2.69
242 243 7.050970 ACTTCCAAACCACCTTAGAATTTTC 57.949 36.000 0.00 0.00 0.00 2.29
243 244 7.125053 TCAACTTCCAAACCACCTTAGAATTTT 59.875 33.333 0.00 0.00 0.00 1.82
244 245 6.609616 TCAACTTCCAAACCACCTTAGAATTT 59.390 34.615 0.00 0.00 0.00 1.82
245 246 6.133356 TCAACTTCCAAACCACCTTAGAATT 58.867 36.000 0.00 0.00 0.00 2.17
246 247 5.701224 TCAACTTCCAAACCACCTTAGAAT 58.299 37.500 0.00 0.00 0.00 2.40
247 248 5.118729 TCAACTTCCAAACCACCTTAGAA 57.881 39.130 0.00 0.00 0.00 2.10
248 249 4.781775 TCAACTTCCAAACCACCTTAGA 57.218 40.909 0.00 0.00 0.00 2.10
249 250 5.130350 TCTTCAACTTCCAAACCACCTTAG 58.870 41.667 0.00 0.00 0.00 2.18
250 251 5.118729 TCTTCAACTTCCAAACCACCTTA 57.881 39.130 0.00 0.00 0.00 2.69
251 252 3.976015 TCTTCAACTTCCAAACCACCTT 58.024 40.909 0.00 0.00 0.00 3.50
252 253 3.662759 TCTTCAACTTCCAAACCACCT 57.337 42.857 0.00 0.00 0.00 4.00
253 254 3.490933 GCTTCTTCAACTTCCAAACCACC 60.491 47.826 0.00 0.00 0.00 4.61
254 255 3.706698 GCTTCTTCAACTTCCAAACCAC 58.293 45.455 0.00 0.00 0.00 4.16
255 256 2.357637 CGCTTCTTCAACTTCCAAACCA 59.642 45.455 0.00 0.00 0.00 3.67
256 257 2.357952 ACGCTTCTTCAACTTCCAAACC 59.642 45.455 0.00 0.00 0.00 3.27
257 258 3.181500 ACACGCTTCTTCAACTTCCAAAC 60.181 43.478 0.00 0.00 0.00 2.93
258 259 3.013921 ACACGCTTCTTCAACTTCCAAA 58.986 40.909 0.00 0.00 0.00 3.28
259 260 2.354510 CACACGCTTCTTCAACTTCCAA 59.645 45.455 0.00 0.00 0.00 3.53
260 261 1.939934 CACACGCTTCTTCAACTTCCA 59.060 47.619 0.00 0.00 0.00 3.53
261 262 1.940613 ACACACGCTTCTTCAACTTCC 59.059 47.619 0.00 0.00 0.00 3.46
262 263 3.675467 AACACACGCTTCTTCAACTTC 57.325 42.857 0.00 0.00 0.00 3.01
263 264 4.434713 AAAACACACGCTTCTTCAACTT 57.565 36.364 0.00 0.00 0.00 2.66
264 265 4.083003 TGAAAAACACACGCTTCTTCAACT 60.083 37.500 0.00 0.00 0.00 3.16
265 266 4.162812 TGAAAAACACACGCTTCTTCAAC 58.837 39.130 0.00 0.00 0.00 3.18
266 267 4.427096 TGAAAAACACACGCTTCTTCAA 57.573 36.364 0.00 0.00 0.00 2.69
267 268 4.497340 GGATGAAAAACACACGCTTCTTCA 60.497 41.667 0.00 0.00 0.00 3.02
268 269 3.975035 GGATGAAAAACACACGCTTCTTC 59.025 43.478 0.00 0.00 0.00 2.87
269 270 3.380004 TGGATGAAAAACACACGCTTCTT 59.620 39.130 0.00 0.00 0.00 2.52
270 271 2.948979 TGGATGAAAAACACACGCTTCT 59.051 40.909 0.00 0.00 0.00 2.85
271 272 3.347958 TGGATGAAAAACACACGCTTC 57.652 42.857 0.00 0.00 0.00 3.86
272 273 3.443976 GTTGGATGAAAAACACACGCTT 58.556 40.909 0.00 0.00 0.00 4.68
273 274 2.540769 CGTTGGATGAAAAACACACGCT 60.541 45.455 0.00 0.00 0.00 5.07
274 275 1.778591 CGTTGGATGAAAAACACACGC 59.221 47.619 0.00 0.00 0.00 5.34
275 276 3.033185 GTCGTTGGATGAAAAACACACG 58.967 45.455 0.00 0.00 0.00 4.49
276 277 4.035017 CAGTCGTTGGATGAAAAACACAC 58.965 43.478 0.00 0.00 0.00 3.82
277 278 3.942115 TCAGTCGTTGGATGAAAAACACA 59.058 39.130 0.00 0.00 0.00 3.72
278 279 4.545823 TCAGTCGTTGGATGAAAAACAC 57.454 40.909 0.00 0.00 0.00 3.32
279 280 4.878971 TCTTCAGTCGTTGGATGAAAAACA 59.121 37.500 0.00 0.00 32.87 2.83
280 281 5.007724 AGTCTTCAGTCGTTGGATGAAAAAC 59.992 40.000 0.00 0.00 32.87 2.43
281 282 5.007626 CAGTCTTCAGTCGTTGGATGAAAAA 59.992 40.000 0.00 0.00 32.87 1.94
282 283 4.511454 CAGTCTTCAGTCGTTGGATGAAAA 59.489 41.667 0.00 0.00 32.87 2.29
283 284 4.058124 CAGTCTTCAGTCGTTGGATGAAA 58.942 43.478 0.00 0.00 32.87 2.69
284 285 3.554960 CCAGTCTTCAGTCGTTGGATGAA 60.555 47.826 0.00 0.00 0.00 2.57
285 286 2.029020 CCAGTCTTCAGTCGTTGGATGA 60.029 50.000 0.00 0.00 0.00 2.92
286 287 2.341257 CCAGTCTTCAGTCGTTGGATG 58.659 52.381 0.00 0.00 0.00 3.51
287 288 1.338200 GCCAGTCTTCAGTCGTTGGAT 60.338 52.381 0.00 0.00 0.00 3.41
288 289 0.033504 GCCAGTCTTCAGTCGTTGGA 59.966 55.000 0.00 0.00 0.00 3.53
289 290 0.034059 AGCCAGTCTTCAGTCGTTGG 59.966 55.000 0.00 0.00 0.00 3.77
290 291 1.871080 AAGCCAGTCTTCAGTCGTTG 58.129 50.000 0.00 0.00 0.00 4.10
291 292 3.746045 TTAAGCCAGTCTTCAGTCGTT 57.254 42.857 0.00 0.00 36.25 3.85
292 293 3.746045 TTTAAGCCAGTCTTCAGTCGT 57.254 42.857 0.00 0.00 36.25 4.34
293 294 4.690748 TCAATTTAAGCCAGTCTTCAGTCG 59.309 41.667 0.00 0.00 36.25 4.18
294 295 6.560253 TTCAATTTAAGCCAGTCTTCAGTC 57.440 37.500 0.00 0.00 36.25 3.51
295 296 6.959639 TTTCAATTTAAGCCAGTCTTCAGT 57.040 33.333 0.00 0.00 36.25 3.41
296 297 8.822652 AATTTTCAATTTAAGCCAGTCTTCAG 57.177 30.769 0.00 0.00 36.25 3.02
297 298 9.612066 AAAATTTTCAATTTAAGCCAGTCTTCA 57.388 25.926 0.00 0.00 36.25 3.02
315 316 9.903185 GCTAGTGATAAGTCGACTAAAATTTTC 57.097 33.333 20.39 8.01 0.00 2.29
322 323 6.710597 AATGGCTAGTGATAAGTCGACTAA 57.289 37.500 20.39 2.10 0.00 2.24
323 324 6.238953 GGAAATGGCTAGTGATAAGTCGACTA 60.239 42.308 20.39 7.83 0.00 2.59
328 329 7.573968 ATTTGGAAATGGCTAGTGATAAGTC 57.426 36.000 0.00 0.00 0.00 3.01
363 364 7.035612 CCTATTTTAGGGCATCAAAAGTTGAC 58.964 38.462 0.00 0.00 41.47 3.18
389 390 2.031360 GAGCATCTCCAATGGCTGC 58.969 57.895 11.60 11.60 36.59 5.25
401 402 3.914312 TCGGGATCGATTTTAGAGCATC 58.086 45.455 0.00 0.00 40.88 3.91
413 414 6.110033 TCTTTGATGTATTTTTCGGGATCGA 58.890 36.000 0.00 0.00 44.44 3.59
416 417 7.938140 TTCTCTTTGATGTATTTTTCGGGAT 57.062 32.000 0.00 0.00 0.00 3.85
422 423 7.169140 GTGCGGTTTTCTCTTTGATGTATTTTT 59.831 33.333 0.00 0.00 0.00 1.94
433 434 2.234300 TCTCGTGCGGTTTTCTCTTT 57.766 45.000 0.00 0.00 0.00 2.52
437 438 1.068474 CGATTCTCGTGCGGTTTTCT 58.932 50.000 0.00 0.00 34.72 2.52
445 446 1.623081 TTTGCGTCCGATTCTCGTGC 61.623 55.000 0.00 0.00 38.40 5.34
466 467 2.046285 TCTCTCGCATCCTCGTGCA 61.046 57.895 0.00 0.00 45.30 4.57
480 481 2.678956 GCGGTGTCGTCTCGTCTCT 61.679 63.158 0.00 0.00 38.89 3.10
504 505 4.446413 ACGATCGAACCCCCGTGC 62.446 66.667 24.34 0.00 33.69 5.34
510 511 2.736682 CGGTTGCACGATCGAACCC 61.737 63.158 24.34 12.32 36.55 4.11
539 540 4.470170 CACGACGGCACCGATCGA 62.470 66.667 27.98 0.00 41.55 3.59
545 546 1.141591 CGTATTACCACGACGGCACC 61.142 60.000 0.00 0.00 44.69 5.01
560 561 1.290324 CTATGCTCTGCGCCCGTAT 59.710 57.895 4.18 0.38 38.05 3.06
564 565 2.514592 TTGCTATGCTCTGCGCCC 60.515 61.111 4.18 0.00 38.05 6.13
566 567 1.985447 TTGCTTGCTATGCTCTGCGC 61.985 55.000 0.00 0.00 39.77 6.09
631 632 0.657951 GAATCTCTACCGTCGCGAGC 60.658 60.000 10.24 3.52 0.00 5.03
637 645 0.930742 CTGCGCGAATCTCTACCGTC 60.931 60.000 12.10 0.00 0.00 4.79
653 661 2.653115 GGCCAGCCAAACTTCTGC 59.347 61.111 3.12 0.00 35.81 4.26
656 664 4.056125 GCCGGCCAGCCAAACTTC 62.056 66.667 18.11 0.00 35.37 3.01
657 665 4.603535 AGCCGGCCAGCCAAACTT 62.604 61.111 26.15 0.00 35.37 2.66
659 667 4.056125 GAAGCCGGCCAGCCAAAC 62.056 66.667 26.15 1.78 35.37 2.93
660 668 4.284550 AGAAGCCGGCCAGCCAAA 62.285 61.111 26.15 0.00 35.37 3.28
834 859 0.735978 GCTTAAATGGGTGTTGCGGC 60.736 55.000 0.00 0.00 0.00 6.53
840 865 2.696759 GCCGCGCTTAAATGGGTGT 61.697 57.895 5.56 0.00 0.00 4.16
912 937 2.592287 AACGCCCGCCGAAGAAAA 60.592 55.556 0.65 0.00 41.02 2.29
1010 1035 2.592308 GGGGCTTGCTAGAGTGGG 59.408 66.667 0.00 0.00 0.00 4.61
1393 1418 2.165301 GCTCGTACATGTCCACCGC 61.165 63.158 0.00 0.00 0.00 5.68
1500 1525 1.186267 ACCACACCTCCTTCTCCGTC 61.186 60.000 0.00 0.00 0.00 4.79
1502 1527 1.592223 GACCACACCTCCTTCTCCG 59.408 63.158 0.00 0.00 0.00 4.63
1778 1807 4.931661 AGAAGACGTACACCAGAAAGAA 57.068 40.909 0.00 0.00 0.00 2.52
1779 1808 4.931661 AAGAAGACGTACACCAGAAAGA 57.068 40.909 0.00 0.00 0.00 2.52
1786 1815 2.032290 GGCAACAAAGAAGACGTACACC 60.032 50.000 0.00 0.00 0.00 4.16
1950 2012 6.003326 TCATCAAATGCTTTACCAGAGAACA 58.997 36.000 0.00 0.00 0.00 3.18
2053 2139 6.248433 ACCATGTCATAGTTCAACCTTTCAT 58.752 36.000 0.00 0.00 0.00 2.57
2062 2148 7.040062 CCAAAACCTAAACCATGTCATAGTTCA 60.040 37.037 0.00 0.00 0.00 3.18
2078 2164 4.352893 AGCTTTAGGAGGACCAAAACCTAA 59.647 41.667 12.33 12.33 41.36 2.69
2119 2205 4.472691 AACGCCATCATGATTACAATCG 57.527 40.909 5.16 6.05 38.26 3.34
2136 2222 8.895932 ATTTGAATCTTGTATTAGTCAAACGC 57.104 30.769 0.00 0.00 37.69 4.84
2224 2313 1.609061 CCGCCACAACTCTCTCATTGT 60.609 52.381 0.00 0.00 39.63 2.71
2237 2326 4.947147 GGCAAGGTGTCCGCCACA 62.947 66.667 0.00 0.00 46.44 4.17
2256 2345 4.803426 GCCTCAGAGACACGGCCG 62.803 72.222 26.86 26.86 36.56 6.13
2257 2346 2.527951 ATTGCCTCAGAGACACGGCC 62.528 60.000 0.00 0.00 41.80 6.13
2258 2347 1.078848 ATTGCCTCAGAGACACGGC 60.079 57.895 0.00 0.00 42.78 5.68
2259 2348 1.364626 GCATTGCCTCAGAGACACGG 61.365 60.000 0.00 0.00 0.00 4.94
2260 2349 1.364626 GGCATTGCCTCAGAGACACG 61.365 60.000 20.66 0.00 46.69 4.49
2261 2350 2.475666 GGCATTGCCTCAGAGACAC 58.524 57.895 20.66 0.00 46.69 3.67
2295 2384 3.558033 AGAGTTCGCCCCACTTTAAAAA 58.442 40.909 0.00 0.00 0.00 1.94
2296 2385 3.217681 AGAGTTCGCCCCACTTTAAAA 57.782 42.857 0.00 0.00 0.00 1.52
2297 2386 2.943036 AGAGTTCGCCCCACTTTAAA 57.057 45.000 0.00 0.00 0.00 1.52
2298 2387 2.943036 AAGAGTTCGCCCCACTTTAA 57.057 45.000 0.00 0.00 0.00 1.52
2299 2388 3.867216 GCTTAAGAGTTCGCCCCACTTTA 60.867 47.826 6.67 0.00 0.00 1.85
2300 2389 2.779506 CTTAAGAGTTCGCCCCACTTT 58.220 47.619 0.00 0.00 0.00 2.66
2301 2390 1.610886 GCTTAAGAGTTCGCCCCACTT 60.611 52.381 6.67 0.00 0.00 3.16
2302 2391 0.036294 GCTTAAGAGTTCGCCCCACT 60.036 55.000 6.67 0.00 0.00 4.00
2303 2392 0.321298 TGCTTAAGAGTTCGCCCCAC 60.321 55.000 6.67 0.00 0.00 4.61
2304 2393 0.618458 ATGCTTAAGAGTTCGCCCCA 59.382 50.000 6.67 0.00 0.00 4.96
2305 2394 2.484889 CTATGCTTAAGAGTTCGCCCC 58.515 52.381 6.67 0.00 0.00 5.80
2306 2395 1.867865 GCTATGCTTAAGAGTTCGCCC 59.132 52.381 6.67 0.00 0.00 6.13
2307 2396 2.827652 AGCTATGCTTAAGAGTTCGCC 58.172 47.619 6.67 0.00 33.89 5.54
2342 2431 9.862371 TGCAATCACGGTGTATTTAAATTATTT 57.138 25.926 5.91 0.00 0.00 1.40
2345 2434 9.862371 AAATGCAATCACGGTGTATTTAAATTA 57.138 25.926 5.91 0.00 38.85 1.40
2346 2435 8.770438 AAATGCAATCACGGTGTATTTAAATT 57.230 26.923 5.91 0.00 38.85 1.82
2347 2436 8.770438 AAAATGCAATCACGGTGTATTTAAAT 57.230 26.923 8.17 5.89 39.44 1.40
2348 2437 8.594881 AAAAATGCAATCACGGTGTATTTAAA 57.405 26.923 8.17 0.00 39.44 1.52
2370 2459 4.608948 ATTGGGTACGGCAATTGAAAAA 57.391 36.364 10.34 0.00 0.00 1.94
2371 2460 4.608948 AATTGGGTACGGCAATTGAAAA 57.391 36.364 10.34 0.00 31.03 2.29
2372 2461 5.723672 TTAATTGGGTACGGCAATTGAAA 57.276 34.783 10.34 0.00 33.53 2.69
2373 2462 5.923733 ATTAATTGGGTACGGCAATTGAA 57.076 34.783 10.34 0.00 33.53 2.69
2374 2463 5.923733 AATTAATTGGGTACGGCAATTGA 57.076 34.783 10.34 0.00 33.53 2.57
2375 2464 6.102663 TCAAATTAATTGGGTACGGCAATTG 58.897 36.000 0.39 0.00 39.62 2.32
2376 2465 6.287589 TCAAATTAATTGGGTACGGCAATT 57.712 33.333 0.39 0.00 39.62 2.32
2377 2466 5.923733 TCAAATTAATTGGGTACGGCAAT 57.076 34.783 0.39 0.00 39.62 3.56
2378 2467 5.477291 TCTTCAAATTAATTGGGTACGGCAA 59.523 36.000 0.39 0.00 39.62 4.52
2379 2468 5.010933 TCTTCAAATTAATTGGGTACGGCA 58.989 37.500 0.39 0.00 39.62 5.69
2380 2469 5.570234 TCTTCAAATTAATTGGGTACGGC 57.430 39.130 0.39 0.00 39.62 5.68
2381 2470 6.809689 GGTTTCTTCAAATTAATTGGGTACGG 59.190 38.462 0.39 0.00 39.62 4.02
2382 2471 6.809689 GGGTTTCTTCAAATTAATTGGGTACG 59.190 38.462 0.39 0.00 39.62 3.67
2383 2472 7.101054 GGGGTTTCTTCAAATTAATTGGGTAC 58.899 38.462 0.39 0.00 39.62 3.34
2384 2473 6.071278 CGGGGTTTCTTCAAATTAATTGGGTA 60.071 38.462 0.39 0.00 39.62 3.69
2385 2474 5.279758 CGGGGTTTCTTCAAATTAATTGGGT 60.280 40.000 0.39 0.00 39.62 4.51
2386 2475 5.175127 CGGGGTTTCTTCAAATTAATTGGG 58.825 41.667 0.39 0.00 39.62 4.12
2387 2476 5.789521 ACGGGGTTTCTTCAAATTAATTGG 58.210 37.500 0.39 0.00 39.62 3.16
2388 2477 7.329962 GGTTACGGGGTTTCTTCAAATTAATTG 59.670 37.037 0.39 0.00 40.58 2.32
2389 2478 7.015389 TGGTTACGGGGTTTCTTCAAATTAATT 59.985 33.333 0.00 0.00 0.00 1.40
2390 2479 6.494146 TGGTTACGGGGTTTCTTCAAATTAAT 59.506 34.615 0.00 0.00 0.00 1.40
2391 2480 5.832060 TGGTTACGGGGTTTCTTCAAATTAA 59.168 36.000 0.00 0.00 0.00 1.40
2392 2481 5.383476 TGGTTACGGGGTTTCTTCAAATTA 58.617 37.500 0.00 0.00 0.00 1.40
2393 2482 4.216708 TGGTTACGGGGTTTCTTCAAATT 58.783 39.130 0.00 0.00 0.00 1.82
2394 2483 3.834938 TGGTTACGGGGTTTCTTCAAAT 58.165 40.909 0.00 0.00 0.00 2.32
2395 2484 3.294038 TGGTTACGGGGTTTCTTCAAA 57.706 42.857 0.00 0.00 0.00 2.69
2396 2485 3.215975 CTTGGTTACGGGGTTTCTTCAA 58.784 45.455 0.00 0.00 0.00 2.69
2397 2486 2.173143 ACTTGGTTACGGGGTTTCTTCA 59.827 45.455 0.00 0.00 0.00 3.02
2398 2487 2.854963 ACTTGGTTACGGGGTTTCTTC 58.145 47.619 0.00 0.00 0.00 2.87
2399 2488 3.301794 AACTTGGTTACGGGGTTTCTT 57.698 42.857 0.00 0.00 0.00 2.52
2400 2489 2.953648 CAAACTTGGTTACGGGGTTTCT 59.046 45.455 0.00 0.00 0.00 2.52
2401 2490 2.689471 ACAAACTTGGTTACGGGGTTTC 59.311 45.455 0.00 0.00 0.00 2.78
2402 2491 2.689471 GACAAACTTGGTTACGGGGTTT 59.311 45.455 0.00 0.00 0.00 3.27
2403 2492 2.300433 GACAAACTTGGTTACGGGGTT 58.700 47.619 0.00 0.00 0.00 4.11
2404 2493 1.212441 TGACAAACTTGGTTACGGGGT 59.788 47.619 0.00 0.00 0.00 4.95
2405 2494 1.970092 TGACAAACTTGGTTACGGGG 58.030 50.000 0.00 0.00 0.00 5.73
2406 2495 2.486592 GGATGACAAACTTGGTTACGGG 59.513 50.000 0.00 0.00 0.00 5.28
2407 2496 3.142951 TGGATGACAAACTTGGTTACGG 58.857 45.455 0.00 0.00 0.00 4.02
2408 2497 5.181245 AGAATGGATGACAAACTTGGTTACG 59.819 40.000 0.00 0.00 0.00 3.18
2409 2498 6.575162 AGAATGGATGACAAACTTGGTTAC 57.425 37.500 0.00 0.00 0.00 2.50
2410 2499 7.595819 AAAGAATGGATGACAAACTTGGTTA 57.404 32.000 0.00 0.00 32.02 2.85
2411 2500 6.484364 AAAGAATGGATGACAAACTTGGTT 57.516 33.333 0.00 0.00 32.02 3.67
2412 2501 6.484364 AAAAGAATGGATGACAAACTTGGT 57.516 33.333 0.00 0.00 32.02 3.67
2413 2502 6.985645 TCAAAAAGAATGGATGACAAACTTGG 59.014 34.615 0.00 0.00 32.02 3.61
2414 2503 8.422973 TTCAAAAAGAATGGATGACAAACTTG 57.577 30.769 0.00 0.00 32.02 3.16
2434 2523 9.770097 TGTGGTAAGCAATTCAAATTATTCAAA 57.230 25.926 0.00 0.00 0.00 2.69
2435 2524 9.941325 ATGTGGTAAGCAATTCAAATTATTCAA 57.059 25.926 0.00 0.00 0.00 2.69
2436 2525 9.368674 CATGTGGTAAGCAATTCAAATTATTCA 57.631 29.630 0.00 0.00 0.00 2.57
2437 2526 9.369904 ACATGTGGTAAGCAATTCAAATTATTC 57.630 29.630 0.00 0.00 0.00 1.75
2438 2527 9.153721 CACATGTGGTAAGCAATTCAAATTATT 57.846 29.630 18.51 0.00 0.00 1.40
2439 2528 8.313292 ACACATGTGGTAAGCAATTCAAATTAT 58.687 29.630 28.64 0.00 34.19 1.28
2440 2529 7.665690 ACACATGTGGTAAGCAATTCAAATTA 58.334 30.769 28.64 0.00 34.19 1.40
2441 2530 6.523840 ACACATGTGGTAAGCAATTCAAATT 58.476 32.000 28.64 0.00 34.19 1.82
2442 2531 6.100404 ACACATGTGGTAAGCAATTCAAAT 57.900 33.333 28.64 0.00 34.19 2.32
2443 2532 5.068329 TGACACATGTGGTAAGCAATTCAAA 59.932 36.000 28.64 0.00 34.19 2.69
2444 2533 4.582240 TGACACATGTGGTAAGCAATTCAA 59.418 37.500 28.64 3.73 34.19 2.69
2445 2534 4.023279 GTGACACATGTGGTAAGCAATTCA 60.023 41.667 28.64 16.61 34.19 2.57
2446 2535 4.216257 AGTGACACATGTGGTAAGCAATTC 59.784 41.667 28.64 14.32 34.19 2.17
2447 2536 4.144297 AGTGACACATGTGGTAAGCAATT 58.856 39.130 28.64 5.13 34.19 2.32
2448 2537 3.754965 AGTGACACATGTGGTAAGCAAT 58.245 40.909 28.64 14.49 34.19 3.56
2449 2538 3.207265 AGTGACACATGTGGTAAGCAA 57.793 42.857 28.64 4.27 34.19 3.91
2450 2539 2.877786 CAAGTGACACATGTGGTAAGCA 59.122 45.455 28.64 15.24 34.19 3.91
2451 2540 2.226437 CCAAGTGACACATGTGGTAAGC 59.774 50.000 28.64 13.87 34.19 3.09
2452 2541 3.250762 CACCAAGTGACACATGTGGTAAG 59.749 47.826 28.64 13.21 40.63 2.34
2453 2542 3.210227 CACCAAGTGACACATGTGGTAA 58.790 45.455 28.64 11.62 40.63 2.85
2454 2543 2.844946 CACCAAGTGACACATGTGGTA 58.155 47.619 28.64 14.74 40.63 3.25
2455 2544 1.679139 CACCAAGTGACACATGTGGT 58.321 50.000 28.64 18.06 43.38 4.16
2456 2545 0.311790 GCACCAAGTGACACATGTGG 59.688 55.000 28.64 17.03 35.23 4.17
2457 2546 0.311790 GGCACCAAGTGACACATGTG 59.688 55.000 24.25 24.25 41.94 3.21
2458 2547 0.106769 TGGCACCAAGTGACACATGT 60.107 50.000 8.59 0.00 45.11 3.21
2459 2548 2.718094 TGGCACCAAGTGACACATG 58.282 52.632 8.59 6.06 45.11 3.21
2464 2553 1.474077 GAATGGATGGCACCAAGTGAC 59.526 52.381 11.83 0.00 42.82 3.67
2465 2554 1.838112 GAATGGATGGCACCAAGTGA 58.162 50.000 11.83 0.00 43.47 3.41
2466 2555 0.452987 CGAATGGATGGCACCAAGTG 59.547 55.000 11.83 0.00 43.47 3.16
2467 2556 0.327924 TCGAATGGATGGCACCAAGT 59.672 50.000 11.83 4.67 43.47 3.16
2468 2557 1.605710 GATCGAATGGATGGCACCAAG 59.394 52.381 11.83 7.66 43.47 3.61
2469 2558 1.064832 TGATCGAATGGATGGCACCAA 60.065 47.619 11.83 0.00 43.47 3.67
2470 2559 0.545646 TGATCGAATGGATGGCACCA 59.454 50.000 10.50 10.50 44.41 4.17
2471 2560 1.233019 CTGATCGAATGGATGGCACC 58.767 55.000 0.00 0.00 34.82 5.01
2472 2561 1.233019 CCTGATCGAATGGATGGCAC 58.767 55.000 0.00 0.00 34.82 5.01
2473 2562 0.839277 ACCTGATCGAATGGATGGCA 59.161 50.000 8.40 0.00 34.82 4.92
2474 2563 1.071385 AGACCTGATCGAATGGATGGC 59.929 52.381 8.40 0.00 34.82 4.40
2475 2564 4.607293 TTAGACCTGATCGAATGGATGG 57.393 45.455 8.40 0.00 34.82 3.51
2476 2565 6.017605 CCTTTTTAGACCTGATCGAATGGATG 60.018 42.308 8.40 0.00 34.82 3.51
2477 2566 6.058183 CCTTTTTAGACCTGATCGAATGGAT 58.942 40.000 8.40 0.86 38.35 3.41
2478 2567 5.188948 TCCTTTTTAGACCTGATCGAATGGA 59.811 40.000 8.40 0.00 0.00 3.41
2479 2568 5.428253 TCCTTTTTAGACCTGATCGAATGG 58.572 41.667 0.00 0.00 0.00 3.16
2480 2569 6.985188 TTCCTTTTTAGACCTGATCGAATG 57.015 37.500 0.00 0.00 0.00 2.67
2481 2570 6.940298 TGTTTCCTTTTTAGACCTGATCGAAT 59.060 34.615 0.00 0.00 0.00 3.34
2482 2571 6.292923 TGTTTCCTTTTTAGACCTGATCGAA 58.707 36.000 0.00 0.00 0.00 3.71
2483 2572 5.860611 TGTTTCCTTTTTAGACCTGATCGA 58.139 37.500 0.00 0.00 0.00 3.59
2484 2573 5.701290 ACTGTTTCCTTTTTAGACCTGATCG 59.299 40.000 0.00 0.00 0.00 3.69
2485 2574 6.128526 CGACTGTTTCCTTTTTAGACCTGATC 60.129 42.308 0.00 0.00 0.00 2.92
2486 2575 5.701290 CGACTGTTTCCTTTTTAGACCTGAT 59.299 40.000 0.00 0.00 0.00 2.90
2487 2576 5.054477 CGACTGTTTCCTTTTTAGACCTGA 58.946 41.667 0.00 0.00 0.00 3.86
2488 2577 5.054477 TCGACTGTTTCCTTTTTAGACCTG 58.946 41.667 0.00 0.00 0.00 4.00
2489 2578 5.286267 TCGACTGTTTCCTTTTTAGACCT 57.714 39.130 0.00 0.00 0.00 3.85
2490 2579 5.560375 GCTTCGACTGTTTCCTTTTTAGACC 60.560 44.000 0.00 0.00 0.00 3.85
2491 2580 5.007332 TGCTTCGACTGTTTCCTTTTTAGAC 59.993 40.000 0.00 0.00 0.00 2.59
2492 2581 5.120399 TGCTTCGACTGTTTCCTTTTTAGA 58.880 37.500 0.00 0.00 0.00 2.10
2493 2582 5.418310 TGCTTCGACTGTTTCCTTTTTAG 57.582 39.130 0.00 0.00 0.00 1.85
2494 2583 6.385649 AATGCTTCGACTGTTTCCTTTTTA 57.614 33.333 0.00 0.00 0.00 1.52
2495 2584 4.918810 ATGCTTCGACTGTTTCCTTTTT 57.081 36.364 0.00 0.00 0.00 1.94
2496 2585 4.918810 AATGCTTCGACTGTTTCCTTTT 57.081 36.364 0.00 0.00 0.00 2.27
2497 2586 6.431234 AGATTAATGCTTCGACTGTTTCCTTT 59.569 34.615 0.00 0.00 0.00 3.11
2498 2587 5.940470 AGATTAATGCTTCGACTGTTTCCTT 59.060 36.000 0.00 0.00 0.00 3.36
2499 2588 5.491982 AGATTAATGCTTCGACTGTTTCCT 58.508 37.500 0.00 0.00 0.00 3.36
2500 2589 5.803020 AGATTAATGCTTCGACTGTTTCC 57.197 39.130 0.00 0.00 0.00 3.13
2501 2590 9.774742 AATAAAGATTAATGCTTCGACTGTTTC 57.225 29.630 0.00 0.00 0.00 2.78
2502 2591 9.774742 GAATAAAGATTAATGCTTCGACTGTTT 57.225 29.630 0.00 0.00 0.00 2.83
2503 2592 8.946085 TGAATAAAGATTAATGCTTCGACTGTT 58.054 29.630 0.00 0.00 0.00 3.16
2504 2593 8.492673 TGAATAAAGATTAATGCTTCGACTGT 57.507 30.769 0.00 0.00 0.00 3.55
2505 2594 9.591404 GATGAATAAAGATTAATGCTTCGACTG 57.409 33.333 0.00 0.00 0.00 3.51
2506 2595 9.330063 TGATGAATAAAGATTAATGCTTCGACT 57.670 29.630 0.00 0.00 0.00 4.18
2507 2596 9.374960 GTGATGAATAAAGATTAATGCTTCGAC 57.625 33.333 0.00 0.00 0.00 4.20
2508 2597 9.108284 TGTGATGAATAAAGATTAATGCTTCGA 57.892 29.630 0.00 0.00 0.00 3.71
2509 2598 9.720667 TTGTGATGAATAAAGATTAATGCTTCG 57.279 29.630 0.00 0.00 0.00 3.79
2535 2624 5.105228 CCATGCAGTGATTAGTGGGATTTTT 60.105 40.000 0.00 0.00 0.00 1.94
2536 2625 4.403432 CCATGCAGTGATTAGTGGGATTTT 59.597 41.667 0.00 0.00 0.00 1.82
2537 2626 3.956199 CCATGCAGTGATTAGTGGGATTT 59.044 43.478 0.00 0.00 0.00 2.17
2538 2627 3.053395 ACCATGCAGTGATTAGTGGGATT 60.053 43.478 3.90 0.00 0.00 3.01
2539 2628 2.511218 ACCATGCAGTGATTAGTGGGAT 59.489 45.455 3.90 0.00 0.00 3.85
2540 2629 1.915489 ACCATGCAGTGATTAGTGGGA 59.085 47.619 3.90 0.00 0.00 4.37
2541 2630 2.425143 ACCATGCAGTGATTAGTGGG 57.575 50.000 3.90 0.00 0.00 4.61
2542 2631 4.142609 ACTACCATGCAGTGATTAGTGG 57.857 45.455 0.00 0.00 30.03 4.00
2543 2632 8.360390 TCTATAACTACCATGCAGTGATTAGTG 58.640 37.037 0.00 0.00 31.00 2.74
2544 2633 8.478775 TCTATAACTACCATGCAGTGATTAGT 57.521 34.615 0.00 0.00 31.52 2.24
2545 2634 9.935241 AATCTATAACTACCATGCAGTGATTAG 57.065 33.333 0.00 0.00 0.00 1.73
2546 2635 9.710900 CAATCTATAACTACCATGCAGTGATTA 57.289 33.333 0.00 0.00 0.00 1.75
2547 2636 8.213679 ACAATCTATAACTACCATGCAGTGATT 58.786 33.333 0.00 3.38 0.00 2.57
2548 2637 7.658982 CACAATCTATAACTACCATGCAGTGAT 59.341 37.037 0.00 0.96 0.00 3.06
2549 2638 6.986231 CACAATCTATAACTACCATGCAGTGA 59.014 38.462 0.00 0.00 0.00 3.41
2550 2639 6.986231 TCACAATCTATAACTACCATGCAGTG 59.014 38.462 0.00 0.00 0.00 3.66
2551 2640 7.069950 TCTCACAATCTATAACTACCATGCAGT 59.930 37.037 0.00 0.00 0.00 4.40
2552 2641 7.383572 GTCTCACAATCTATAACTACCATGCAG 59.616 40.741 0.00 0.00 0.00 4.41
2553 2642 7.210174 GTCTCACAATCTATAACTACCATGCA 58.790 38.462 0.00 0.00 0.00 3.96
2554 2643 6.647067 GGTCTCACAATCTATAACTACCATGC 59.353 42.308 0.00 0.00 0.00 4.06
2555 2644 7.726216 TGGTCTCACAATCTATAACTACCATG 58.274 38.462 0.00 0.00 0.00 3.66
2556 2645 7.914427 TGGTCTCACAATCTATAACTACCAT 57.086 36.000 0.00 0.00 0.00 3.55
2557 2646 7.914427 ATGGTCTCACAATCTATAACTACCA 57.086 36.000 0.00 0.00 37.65 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.