>input_sequence_75238
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----------------------------------------------------------------ATGGCCACCACCCACT
CTAGCAAGCCCCGCCACCGCTCGGAGGCCTCCGCCCCCGCCACCTCCGTGGCCGTCGCGGCGGCGAGGGCGCAGGACGCT
CCCAAGCCCCCGCTCAGGCGGTCCGCGGCCTTCCAGCCGCGCCGCTCGCACAGCCACCCGCAGCCGCATGCGCACGGCCA
CCAGCGCTGCGACAGCGAGGCGATCAGCCGCAGCGGCAGGCAGCCCCGCTGCGGCGAGGTGGCCGGCGGCACGGCGGCCG
GGTGCGCCGCCGTGTGCTGCTGCTTCCCCTGCGTCATGGTGGAGGTCGTCGTGCTCGCCACGGTCCGCGCGCCTGCCGCG
CTCTGCCGGCGCGCGGTCCGGGCGCGCCGGCGCCGCCGCTCGGCCTCTGCGGGGCAGGCGGTGGACATGTACGAGCTGCT
CGTCGACGACGGCACCGTGGCCGGGCCCGGCGACGCGGCGGTGGTCTGGCCCGCGGGTCAGCCGCCGGAGGAGGAGGCGG
GGGAGACGGAGAAGGAGGTGTGGTCGAGGTTCTACGGCGCCGGCTTCTGGAGGAGCCCCTCGTCGCTCGGCGACGAGAAC
AGATGA--------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G371400
AAGCTACAATGAAGACACAAAGGACTAGGAGACAACAAGAAAATCCAAAGATCGATGCAAGTCAAGACAAAGAAGATAAA
TGCCGCAATAAGCACAAGTGCAAAAAATCCAAAGTCACTTTTGCACAATTATTAGATAAATACCAAAAGAAGAGTGAAGA
GAAAAGTTTTTATCGGCTAACTAATGGAAAAGTATCAAGATCACCCCCTAGGCGCAAACCCGAGGATCGGTATTGGCAAA
ATGAAAATTCTAAGGTGGTTTGGAAGTTGAAGAAGCGTGTGTTTTTCATCCAACGACTGAAGACTGGCTTAAATTGAAAA
TTTTAGTCGACTTATCACTAGCCATTTCCAAATTTTTTACTCCGTCAACTTTTGATGCCCTAAAATAGGGCAGCCATTGG
AGATGCTCTAAAATCGATCCCGAAAAATACATCAAAGAGAAAACCGCACGAGAATCGGACGCAAAGTGCACGAGGATGCG
AGAGACGAGACGACACCGCATGCGGCACGGGGGTTCGATCGTGCAACCGAAAGATTTGGTCGATCGGTGCCGTCGTGGTA
ATACGGGCGCAGAGCATAGCAAGCAAACAGTGTCGCTGCCCAACATTCCGTCCGCGCCACGTTGCTGCCGGGC-------
TCGCGACGGTAGAGATTCGCGCAGAAGTT-----TGGCTGGCCGGCTTCTCCCACGAAACGTGCGCGCTCGTGCATGGAC
GCACGCATGTCTGCTGCTCTGCTCTGCTCCGCTCCGTGGCGCCTTTCCGTTTCCGCCTTCCTGTCTGCCCCGCCCCAATA
ATGGT------------GAGAGAGGCCGGCCGGTTTCGCCGCCGCGATGGCCGCCCGAGCCGCAACACCCATTTAAGCGC
GGCCCTCGTCATCCACCCACGCTTTAAGCTTCCCCTCCCGCCGAGCGCACGTACTATTTTCTTCGGCGGGCGTTCCACGT
GGTGGCCGCCGCGGCAGCTCTAAGGCCACCCGCGCGCGAACGACTCGCCCAGGCAAGCCAAGCCATGGCCACCACCCACT
CTAGCAAGCCCCGCCACCGCTCGGAGGCCTCCGCCCCCGCCACCTCCGTGGCCGTCGCGGCGGCGAGGGCGCAGGACGCT
CCCAAGCCCCCGCTCAGGCGGTCCGCGGCCTTCCAGCCGCGCCGCTCGCACAGCCACCCGCAGCCGCATGCGCACGGCCA
CCAGCGCTGCGACAGCGAGGCGATCAGCCGCAGCGGCAGGCAGCCCCGCTGCGGCGAGGTGGCCGGCGGCACGGCGGCCG
GGTGCGCCGCCGTGTGCTGCTGCTTCCCCTGCGTCATGGTGGAGGTCGTCGTGCTCGCCACGGTCCGCGCGCCTGCCGCG
CTCTGCCGGCGCGCGGTCCGGGCGCGCCGGCGCCGCCGCTCGGCCTCTGCGGGGCAGGCGGTGGACATGTACGAGCTGCT
CGTCGACGACGGCACCGTGGCCGGGCCCGGCGACGCGGCGGTGGTCTGGCCCGCGGGTCAGCCGCCGGAGGAGGAGGCGG
GGGAGACGGAGAAGGAGGTGTGGTCGAGGTTCTACGGCGCCGGCTTCTGGAGGAGCCCCTCGTCGCTCGGCGACGAGAAC
AGATGATCGGGACAGGCCGGCGGCTCCCGCATGCATGCGACGCCCTGGCTTCTTCTACGGCTTTCTTGATTCTTGCTCGG
GTA----GGCTTCCTTCGTTTTCCTCGGGGGGAAACCGATGTAGAGGAGGAAATGGGAAGCTTGTGTGTCGTGTTTGATC
CACACCGCATTCTTGTTCCACCTTGTATCCGCTCTTTTTTCTTCTTTTCTTTCTGGTGTACGT-----------------
--------------CTTCTTTGTTGCCATTGTATGCAACTAAATGTATATACCGAGTAATGTGATTGGGGAAAAAAAA--
TACACACTCCAAAAAGGACAAGAAGAATCGCTCAATGGCGACGGACACAAGCACATCACATACAGAGATTTACGTTGGGA
GGAGGTATTTATGTTCTCTGG------------------------TAAAGCATTTGATGAGTCTTCGTGAGACTAGTATT
AATTATATTCATAGGTCCTAAAAATAAAGTTAGCAATTGTTTGGATATCTTTGCAAGGATGAAAGGTTGAACTATGACAT
GGTTTAGGTTTTGGTCCTCCTAAAGCTGCGGAGCTTGCTAGCTCCGATTGTAATCATGATGGCGTTTGACTAATACAAG-
ATTCAAATTTGCAAAA--AGAAAAAAACTTATTTGCCGAGGCAGCCAAGGTATCCAAAGAGGACACAAAAAAACAATGAG
AGAGTTGTGGCGGACACCTTGCCCCGGCCGTGTCTCTGAGGCAATGCCATTAGTAGGGCAGCTTTTTTAAAGTGGGGCGA
ACTCTTAAGCATAGCTTTATGATCCAAAAAAAATAATTTAAATACACCGTGATTGCATTTTTTCAATTGCCGTACCCAAT
TAATTTGAAGAAACCCCGTAACCAAGTTTGTCATCCATTCTTTTTGAATAATTTGAATTGCTTACCACATGTGTCACTTG
GTGCCATCCATTCGATCAGGTCTAAAAAGGAAACAGTCGAAGCATTAATCTTTATTCATCACAAAAAATCCCACTAATCA
CTGCATGGTAGTTATAGATTGTGAGACCAT
>chr5D_302
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-------------------------------------------------------------GACTGACCTAAATT-AAAA
TTGCAGTCAACTTACCACTAGCCATTCCCAAATATTTTACTCCATCAACTTTTGATGCCCTAAAATAGGTCAGCTGTTGG
ACATGCTCTAAAACCGGTCCCGGAAAATACATCGAAGGGAAAACGACACGAGAATCGGACGCAAAGCGCACGAGGACGCG
CGAGACGAGACGACCCTGCATGCGACACGGAGGTTCGATCGTGCAACCGAAAGATTTGGCCGATCCGTTCCGTCGTGGTA
GTACCGACGCATAGCATAGCAAGCAAACAGTGTCGCTGCC-----------------------------GGCC-------
TCGCAACGGTAGAGATTCGCACACGAAGTTTGGCTGGCCGGCCGGCTCCTCCCACGAAACGTGCGCGCGCATGCATGCAC
GCACGCATGTCTGCTGCTCTGCTCCGCTCCGCTCCGTCGCGCCTTTCCGTTTCCGCCTTCCTGTCTGCCCCGCCCCAATA
ATGGC------------GAGAGAGGCCGGCCGGCTTCACCGCCGCGATGGCCGCCCGACCCGCAGCACCCATTTAAGCGC
GGCCCTTGTCATCCACCCACGCTTTAAGCTTCCTCCCTCCCCGAGCGCACATACTACTTTCTTCGGCGGGCGTTCCACGT
GGTGGCCGCCGCGGCAGCTCTAAGGCCACCCGCGCGCGAACGACTCGCCCAGGCAAGCCAAGCCATGGCCACCATCCACT
CTAGCAAGCCCCGCCACCGCTCCGATGCATCCGCCCCCGCCACCTCCGTGGCCGTCGCCGCGGCGAGGGCGCAGGACGCG
CCCAAGCCCCCGCTCAGGCGGTCCGTGGCCTTCCAGCCGCGCCGCTCGCACAGCCACCCGCAGCCGCATGCGCACGGCCA
CCAACGCTGCGACAGTGAGGCGATCAGCCGCAGCGGCAGGCAGCCCCGCTGCGGCGAGGTGGCCGGCGGCACGGCGGCCG
GGTGCGCCGCCGTGTGCTGCTGCTTTCCCTGCGTCATGGTGGAGGTCGTCGTGCTCGCCACGGTCCGCGCGCCGGCCGCG
CTCTGCCGGCGCGCGGTCCGGGCGCGCCGGCGCCGCCGCTCGGCCTCGGCGGGGCAGACCGTGGACATGTACGAGCTGCT
CGCCGACGACGGCACCGTGGCCGGGCCCGGCGACGCGGCGGTCGTCTGGCCCGCGGGTCAGCCGGCGGAGGAGTCGTCGG
GGGAAATGGAGAAGGAGGTGTGGTCGAGTTTCTACGGCGCCGGCTTCTGGAGGAGCCCCTCGTCGCTCGGCGACGAGAAC
AGATGATCGGGACAGGCCGGCGGCTCCTGCATGCATGCGACGCCCTGGCTTCTTCTACGGCTTTCTTGATTCTTGCTCGG
GTACGTAGGCTTCCTTCGTTTTCCTCGGGGGGAAACCGATGTAGAGGAGGAAATGGGAAGCTTGTGTGTCGTGTTTGATC
CACACCGCATTCTTGTTCCACCTTATATCCACTCTTTTTTCTTCTTCCCTTTCTTGTT-GGTGTACGTCCTCTAGAAGGG
AAATGAACAGTTCCCTTCTTTGTTACCATTGTATGCAACTAAATGTATATACCGAGTGATGTGATTGGGGAAAAAAAA--
TACACACTCCAAAAAGGACAAGAAGAATCGCTCAATGGCGACGGACACAAGCACATCGCATACAGAGATTTACGTTGGGA
GGAGGTATTTAAGTTCTCTGGAGACCTTAACAACTTCTTCGCCCATAAAGCATTTGATGAGTTTTCGTGAGACTAGTATT
ACTCATATTCGCAGGCCAT-AAAATAAAGTTAGCAATTGTTTGGCTATCTTTGCATGGGTGAAAGGTAGAAATAGGACAT
GGT-TAGGTTTTGATCCTCCTAAAGTTGTGGAGCTGGCTAGCTCTGATTGTAATCATGATGTGGTTTGAGTAATACAAAG
TTTCAAATTCGAAAAAAGAGAAAAAAACTTATTCGCCGAGGCAGCCAAGGTATCCAAACAGGA-----------------
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>chr5B_365
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--------------------------------------------TCAACTTTTGATGCCCTAAAATAGGCCAGCTGTTGA
ACATGCTCTAAAACCGGTCCCGGAAAATACATCCAAGGGAAAACCACACGAGAATCGGACGCAAAGCGCACGAGGATGCG
CGAGACGAGACGACACCGCATGCGACACGGAGGTTCGATCGTGCAACCGAAAGATTTGG---ATCCGTTCCGTCGTGGTA
GTACCGACGCAGAGCATAGCAAGCAAACAGTGTCGCTGCCCAACATTCCCTCCGCGCCACGTTGCTGCCGGCCTCGCAAG
TCGCAACGGTAGAGATTCGCACACGAAGTTTGGCTGGCCG----GCTCCTCCCACGAAACGTGCGCGCGCATGCATGCAC
GCACGCATGTCTGCTGCTCTGCTCTGCTCCGCTCCGTGGCGTCTTTCCGTTTCCGCCTTCCTGTCTGCCCCGCCCCAATA
ATCCAATAATGGAGAGAGAGAGAGGCCGGCCGGTTTCGCCGCCGCGATGGCCGCCCGACCCGCAGCAACCATTTAAGCGC
GACCCTCGTCATCCACCCACGCCTTAAGCTTCCCCTCCCGCCGAGCGCACGTACTACTTTCTTCGGCGGGCGTTCCACGT
GGTGGCCGCCGCGCCTGCTCTAAGGCCACCCGCGCGCGAACGACTCGCCCAGGCAAGCCAAGGCATGGCCACCATCCGCT
CTAGCAAGCCCCGCCACCGCTCCGAGGCCTCCGCCCCCGCCACCTCCGTGGCCGTCGCCGCGGCGAGGGCGCAGGACGCT
CCCAAGCCCCCGCTCAGGCGGTCCGCGGCCTTCCAGCCGCGCCGCTCGCACAGCCACCCGCAACCGCATGCGCACGGCCA
CCAGCGCTGCGACAGCGAGCATGTCAGCCGCAGCGGCAGGCAGCCCCGCTGCGGCGAGGTGGCCGGCGGCACGGCGGCCG
GGTGCGCCGCCGTATGCTGCTGCTTCCCGTGCGTCATGGTGGAGGTCGTCGTGCTCGCCACGGTCCGCGCGCCAGCCGCG
CTCTGCCGGCGCGCGGTCCGGGCGCGCCGGCGCCGCCGCTCGGCCTCGGCGGGGCAGCCGGTGGACATGTACGAGCTGCT
CGTCGACGACGGCACCGTGGCCGGTCCCGGCGACGCGGCGGTGGTCTGGCCCGCGGGTCAGCCGCCGGAGGAGGAGGCGG
GGGAAATGGAGAACGAGGTGTGGTCGAGGTTCTACGGCGCCGGCTTCTGGAGGAGCCCCTCGTCGCTCGGCGACGAGAAC
AGATGATCGGCACAGGCCGGCGGCTCCTGCATGCATGCGACGCCCTGGCTTCGTCTACGGCTTTCTTGATTCTTGCTCGG
GTA----GGCTTCCTTCGTTTTCCTCGGAGGGAAACCGATGTAGAGGAGGAAATGGGAAGCTTGTGTGTCGTGTTTGATC
CACACCGCATTCTTGTTCCACCTTATATCCACTATTTTTTCTTCTTCCTTTTCTTGTTGGGTGTACGTCCTCTACAAGGG
AAATGAACACTTCCCTTCTTTGTTGCCATTGTATGCAACTAAATATATATACCGAGTGATGTGATTGGGGAAAAAAAAAA
TACACACTCCAAAAAGGACAAGAAGAATCGCTCAATGGCGACGGACACAGGCACATCACATACAGAGATTTACGTTGGGA
GGAGGTATTTAAGTTCTCTGGAGACCTTAACAACTTCTTCGCCGATAAAGCATTTGATGAGTCTTTGTGAGACTAGTATT
AATTATATTCCTAGGTCCTAAAA-TAAAGTTAGGAATTGTTTGGCTATTTTTGCAAGGGTGAAAGGTAGAGCTATTACTT
GGT-TAGGTTTTGGTCCTCCTAAAGCAGTGGAGCTTGCTAGCTCTGATTGTAATCATGATGAGGTTTGAGTAATACAAA-
TTTTAAATTCGCAAAATAATAATAAAAAATCCTCGCCGAGGCAGCCAAGGTACCAAAAGAGGACACAAAAAA-CAATGAG
AGAGTCATGGCGGACACCCTGCCC--------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-S------S----
--SS----S-----S-----------S------S---------S-------------------------S----SS----
-S-----------S--S-----S----------S---S-------S--------------------S-------------
S-----------------------S-----S----------------------------S-----S--S-----------
S---S-S------------------------------------------S---------------------S--------
----S---------------S--SS-SS----------S--------S--------------------S-S------S--
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----S-----------------------------------------------------S-----S---------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------S-----
----------------------S-----------------------------------S---------------------
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-------------------------------------------------------------------------S------
-----------------------------------------------S---------S----------------------
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----S-S-------------------------------------------------------------------------
---------------------------S----------------------------------------------------
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------------------------S-----S---------------SS------S--SSSSSS-----------------
---------------------------------------------------------S----------------------
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-----------S--------------------------------------------------------------------
----------S---------------------------------S-------------S--------S------------
---S------------------------S---------------S----------------SS------S--------S-
S--------S-----------------------S--------------------------------------S-------
-----SS-----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_309
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-------------------------------------------------CCAACGACTGAAGACTGGCT-----------
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>reverse_2391
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----------------------------------------------------------------------AGTGGGGCGA
ACTCTTAAGC----------------------------------------------------------------------
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