Multiple sequence alignment - TraesCS5A01G356300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G356300 | chr5A | 100.000 | 3559 | 0 | 0 | 1 | 3559 | 558682014 | 558685572 | 0.000000e+00 | 6573 |
1 | TraesCS5A01G356300 | chr5D | 91.095 | 1415 | 72 | 29 | 1151 | 2560 | 442496817 | 442498182 | 0.000000e+00 | 1866 |
2 | TraesCS5A01G356300 | chr5D | 90.041 | 733 | 52 | 13 | 2757 | 3484 | 442498244 | 442498960 | 0.000000e+00 | 929 |
3 | TraesCS5A01G356300 | chr5D | 95.266 | 169 | 7 | 1 | 2587 | 2754 | 5112350 | 5112182 | 2.110000e-67 | 267 |
4 | TraesCS5A01G356300 | chr5D | 90.341 | 176 | 12 | 2 | 2410 | 2585 | 442500095 | 442500265 | 3.570000e-55 | 226 |
5 | TraesCS5A01G356300 | chr5B | 93.299 | 1149 | 44 | 18 | 1151 | 2279 | 538717512 | 538718647 | 0.000000e+00 | 1664 |
6 | TraesCS5A01G356300 | chr5B | 86.786 | 840 | 52 | 15 | 2752 | 3559 | 538718958 | 538719770 | 0.000000e+00 | 881 |
7 | TraesCS5A01G356300 | chr5B | 93.392 | 227 | 9 | 2 | 2359 | 2585 | 538718710 | 538718930 | 7.360000e-87 | 331 |
8 | TraesCS5A01G356300 | chr5B | 77.331 | 472 | 53 | 18 | 2877 | 3301 | 538720029 | 538720493 | 2.760000e-56 | 230 |
9 | TraesCS5A01G356300 | chr5B | 89.697 | 165 | 10 | 5 | 195 | 356 | 538716542 | 538716702 | 1.680000e-48 | 204 |
10 | TraesCS5A01G356300 | chr5B | 80.588 | 170 | 10 | 11 | 369 | 527 | 538716742 | 538716899 | 3.760000e-20 | 110 |
11 | TraesCS5A01G356300 | chr1A | 97.059 | 170 | 5 | 0 | 2582 | 2751 | 6472112 | 6471943 | 1.620000e-73 | 287 |
12 | TraesCS5A01G356300 | chr6A | 95.833 | 168 | 6 | 1 | 2584 | 2751 | 550716830 | 550716664 | 1.630000e-68 | 270 |
13 | TraesCS5A01G356300 | chr4D | 94.350 | 177 | 8 | 2 | 2587 | 2763 | 93336684 | 93336858 | 1.630000e-68 | 270 |
14 | TraesCS5A01G356300 | chr6B | 94.706 | 170 | 9 | 0 | 2586 | 2755 | 520090687 | 520090518 | 7.580000e-67 | 265 |
15 | TraesCS5A01G356300 | chr3D | 93.333 | 180 | 11 | 1 | 2586 | 2765 | 105119471 | 105119293 | 7.580000e-67 | 265 |
16 | TraesCS5A01G356300 | chr2B | 93.220 | 177 | 12 | 0 | 2577 | 2753 | 689781895 | 689781719 | 9.800000e-66 | 261 |
17 | TraesCS5A01G356300 | chr7D | 93.220 | 177 | 11 | 1 | 2575 | 2751 | 530406725 | 530406900 | 3.520000e-65 | 259 |
18 | TraesCS5A01G356300 | chr4A | 93.642 | 173 | 11 | 0 | 2579 | 2751 | 47740264 | 47740092 | 3.520000e-65 | 259 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G356300 | chr5A | 558682014 | 558685572 | 3558 | False | 6573 | 6573 | 100.000000 | 1 | 3559 | 1 | chr5A.!!$F1 | 3558 |
1 | TraesCS5A01G356300 | chr5D | 442496817 | 442500265 | 3448 | False | 1007 | 1866 | 90.492333 | 1151 | 3484 | 3 | chr5D.!!$F1 | 2333 |
2 | TraesCS5A01G356300 | chr5B | 538716542 | 538720493 | 3951 | False | 570 | 1664 | 86.848833 | 195 | 3559 | 6 | chr5B.!!$F1 | 3364 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
738 | 791 | 0.033781 | TTGCTTGATTGTTGGCCTGC | 59.966 | 50.0 | 3.32 | 0.0 | 0.0 | 4.85 | F |
804 | 885 | 0.109039 | GTGCTGTCCCTTCTCGTCTC | 60.109 | 60.0 | 0.00 | 0.0 | 0.0 | 3.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2049 | 2181 | 0.529833 | CGGTGTCAGAGATGAGCAGT | 59.470 | 55.0 | 0.0 | 0.0 | 0.0 | 4.40 | R |
2585 | 2755 | 1.272807 | TTTGGGAACGGAGGGAGTAG | 58.727 | 55.0 | 0.0 | 0.0 | 0.0 | 2.57 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.334054 | GAGGCAGGGCAGGGAAGT | 61.334 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
18 | 19 | 3.635268 | GAGGCAGGGCAGGGAAGTG | 62.635 | 68.421 | 0.00 | 0.00 | 0.00 | 3.16 |
19 | 20 | 3.650950 | GGCAGGGCAGGGAAGTGA | 61.651 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
20 | 21 | 2.436109 | GCAGGGCAGGGAAGTGAA | 59.564 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
21 | 22 | 1.676967 | GCAGGGCAGGGAAGTGAAG | 60.677 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
22 | 23 | 1.001641 | CAGGGCAGGGAAGTGAAGG | 60.002 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
23 | 24 | 2.361737 | GGGCAGGGAAGTGAAGGC | 60.362 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
24 | 25 | 2.361737 | GGCAGGGAAGTGAAGGCC | 60.362 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
25 | 26 | 2.747855 | GCAGGGAAGTGAAGGCCG | 60.748 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
26 | 27 | 2.750350 | CAGGGAAGTGAAGGCCGT | 59.250 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
27 | 28 | 1.376037 | CAGGGAAGTGAAGGCCGTC | 60.376 | 63.158 | 12.27 | 12.27 | 0.00 | 4.79 |
28 | 29 | 2.434359 | GGGAAGTGAAGGCCGTCG | 60.434 | 66.667 | 14.24 | 0.00 | 0.00 | 5.12 |
29 | 30 | 3.119096 | GGAAGTGAAGGCCGTCGC | 61.119 | 66.667 | 22.79 | 22.79 | 0.00 | 5.19 |
41 | 42 | 4.129737 | CGTCGCCGTCCATCACCT | 62.130 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
42 | 43 | 2.202756 | GTCGCCGTCCATCACCTC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
43 | 44 | 3.822192 | TCGCCGTCCATCACCTCG | 61.822 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
45 | 46 | 4.148825 | GCCGTCCATCACCTCGCT | 62.149 | 66.667 | 0.00 | 0.00 | 0.00 | 4.93 |
46 | 47 | 2.202797 | CCGTCCATCACCTCGCTG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 5.18 |
47 | 48 | 2.887568 | CGTCCATCACCTCGCTGC | 60.888 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
48 | 49 | 2.581354 | GTCCATCACCTCGCTGCT | 59.419 | 61.111 | 0.00 | 0.00 | 0.00 | 4.24 |
49 | 50 | 1.520342 | GTCCATCACCTCGCTGCTC | 60.520 | 63.158 | 0.00 | 0.00 | 0.00 | 4.26 |
50 | 51 | 2.202987 | CCATCACCTCGCTGCTCC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
51 | 52 | 2.584418 | CATCACCTCGCTGCTCCG | 60.584 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
52 | 53 | 4.521062 | ATCACCTCGCTGCTCCGC | 62.521 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
61 | 62 | 4.379243 | CTGCTCCGCCGTCCAAGT | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
62 | 63 | 4.680237 | TGCTCCGCCGTCCAAGTG | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 3.16 |
64 | 65 | 4.680237 | CTCCGCCGTCCAAGTGCA | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.57 |
65 | 66 | 4.680237 | TCCGCCGTCCAAGTGCAG | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.41 |
66 | 67 | 4.680237 | CCGCCGTCCAAGTGCAGA | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
67 | 68 | 3.114616 | CGCCGTCCAAGTGCAGAG | 61.115 | 66.667 | 0.00 | 0.00 | 0.00 | 3.35 |
68 | 69 | 3.426568 | GCCGTCCAAGTGCAGAGC | 61.427 | 66.667 | 0.00 | 0.00 | 0.00 | 4.09 |
69 | 70 | 2.031012 | CCGTCCAAGTGCAGAGCA | 59.969 | 61.111 | 0.00 | 0.00 | 35.60 | 4.26 |
70 | 71 | 2.031516 | CCGTCCAAGTGCAGAGCAG | 61.032 | 63.158 | 0.00 | 0.00 | 40.08 | 4.24 |
71 | 72 | 2.031516 | CGTCCAAGTGCAGAGCAGG | 61.032 | 63.158 | 0.00 | 0.00 | 40.08 | 4.85 |
72 | 73 | 2.033141 | TCCAAGTGCAGAGCAGGC | 59.967 | 61.111 | 0.00 | 0.00 | 40.08 | 4.85 |
73 | 74 | 3.429141 | CCAAGTGCAGAGCAGGCG | 61.429 | 66.667 | 0.00 | 0.00 | 40.08 | 5.52 |
74 | 75 | 3.429141 | CAAGTGCAGAGCAGGCGG | 61.429 | 66.667 | 0.00 | 0.00 | 40.08 | 6.13 |
91 | 92 | 4.162690 | GCTCTTCACCCGCCGGAT | 62.163 | 66.667 | 5.05 | 0.00 | 0.00 | 4.18 |
92 | 93 | 2.202932 | CTCTTCACCCGCCGGATG | 60.203 | 66.667 | 5.05 | 0.00 | 0.00 | 3.51 |
93 | 94 | 4.467084 | TCTTCACCCGCCGGATGC | 62.467 | 66.667 | 5.05 | 0.00 | 0.00 | 3.91 |
233 | 234 | 0.317436 | GTCCGAGATCGCTACAGCAG | 60.317 | 60.000 | 1.61 | 0.00 | 42.21 | 4.24 |
238 | 239 | 2.923655 | CGAGATCGCTACAGCAGAAAAA | 59.076 | 45.455 | 1.61 | 0.00 | 42.21 | 1.94 |
239 | 240 | 3.000277 | CGAGATCGCTACAGCAGAAAAAG | 60.000 | 47.826 | 1.61 | 0.00 | 42.21 | 2.27 |
243 | 244 | 4.732285 | TCGCTACAGCAGAAAAAGAAAG | 57.268 | 40.909 | 1.61 | 0.00 | 42.21 | 2.62 |
244 | 245 | 4.377021 | TCGCTACAGCAGAAAAAGAAAGA | 58.623 | 39.130 | 1.61 | 0.00 | 42.21 | 2.52 |
248 | 249 | 5.917447 | GCTACAGCAGAAAAAGAAAGAAAGG | 59.083 | 40.000 | 0.00 | 0.00 | 41.59 | 3.11 |
250 | 251 | 3.732721 | CAGCAGAAAAAGAAAGAAAGGCG | 59.267 | 43.478 | 0.00 | 0.00 | 0.00 | 5.52 |
255 | 256 | 5.456822 | CAGAAAAAGAAAGAAAGGCGACAAG | 59.543 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
301 | 302 | 3.208594 | GCTCAATCATGCATAGTGGACA | 58.791 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
303 | 304 | 4.193865 | CTCAATCATGCATAGTGGACACA | 58.806 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
334 | 335 | 2.435059 | GGTGCTCCTTGTCTCCGC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
335 | 336 | 2.435059 | GTGCTCCTTGTCTCCGCC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
354 | 385 | 2.027605 | CAGCGTCCACGTGTCTGT | 59.972 | 61.111 | 15.65 | 0.00 | 42.22 | 3.41 |
365 | 396 | 2.358615 | TGTCTGTCGGCATGTGGC | 60.359 | 61.111 | 0.00 | 0.00 | 43.74 | 5.01 |
410 | 441 | 4.552365 | CGACGGGGGCAGATGCAT | 62.552 | 66.667 | 0.00 | 0.00 | 44.36 | 3.96 |
411 | 442 | 2.903855 | GACGGGGGCAGATGCATG | 60.904 | 66.667 | 2.46 | 0.00 | 44.36 | 4.06 |
434 | 465 | 1.339929 | TCCATACATGATCCACGTCCG | 59.660 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
437 | 468 | 2.344521 | TACATGATCCACGTCCGCGG | 62.345 | 60.000 | 22.12 | 22.12 | 43.45 | 6.46 |
480 | 522 | 1.153628 | GTGGTCACCCTCGAATCGG | 60.154 | 63.158 | 1.76 | 0.00 | 0.00 | 4.18 |
514 | 556 | 1.303236 | TTCGGTGCTGGTCAATGGG | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
538 | 580 | 2.666207 | GGTGTGGCCGGTGTGATA | 59.334 | 61.111 | 1.90 | 0.00 | 0.00 | 2.15 |
539 | 581 | 1.449601 | GGTGTGGCCGGTGTGATAG | 60.450 | 63.158 | 1.90 | 0.00 | 0.00 | 2.08 |
540 | 582 | 1.295423 | GTGTGGCCGGTGTGATAGT | 59.705 | 57.895 | 1.90 | 0.00 | 0.00 | 2.12 |
541 | 583 | 0.533491 | GTGTGGCCGGTGTGATAGTA | 59.467 | 55.000 | 1.90 | 0.00 | 0.00 | 1.82 |
542 | 584 | 0.821517 | TGTGGCCGGTGTGATAGTAG | 59.178 | 55.000 | 1.90 | 0.00 | 0.00 | 2.57 |
543 | 585 | 0.822164 | GTGGCCGGTGTGATAGTAGT | 59.178 | 55.000 | 1.90 | 0.00 | 0.00 | 2.73 |
544 | 586 | 0.821517 | TGGCCGGTGTGATAGTAGTG | 59.178 | 55.000 | 1.90 | 0.00 | 0.00 | 2.74 |
545 | 587 | 1.108776 | GGCCGGTGTGATAGTAGTGA | 58.891 | 55.000 | 1.90 | 0.00 | 0.00 | 3.41 |
546 | 588 | 1.687123 | GGCCGGTGTGATAGTAGTGAT | 59.313 | 52.381 | 1.90 | 0.00 | 0.00 | 3.06 |
547 | 589 | 2.889045 | GGCCGGTGTGATAGTAGTGATA | 59.111 | 50.000 | 1.90 | 0.00 | 0.00 | 2.15 |
548 | 590 | 3.510360 | GGCCGGTGTGATAGTAGTGATAT | 59.490 | 47.826 | 1.90 | 0.00 | 0.00 | 1.63 |
549 | 591 | 4.380655 | GGCCGGTGTGATAGTAGTGATATC | 60.381 | 50.000 | 1.90 | 0.00 | 0.00 | 1.63 |
559 | 601 | 7.600375 | GTGATAGTAGTGATATCATGGTGGTTG | 59.400 | 40.741 | 9.02 | 0.00 | 40.69 | 3.77 |
573 | 615 | 3.317449 | GGTTGCTCCACTAACCGTT | 57.683 | 52.632 | 0.00 | 0.00 | 37.23 | 4.44 |
574 | 616 | 0.872388 | GGTTGCTCCACTAACCGTTG | 59.128 | 55.000 | 0.00 | 0.00 | 37.23 | 4.10 |
575 | 617 | 1.589803 | GTTGCTCCACTAACCGTTGT | 58.410 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
580 | 622 | 3.181463 | TGCTCCACTAACCGTTGTTAACT | 60.181 | 43.478 | 7.22 | 0.00 | 36.54 | 2.24 |
581 | 623 | 3.185797 | GCTCCACTAACCGTTGTTAACTG | 59.814 | 47.826 | 7.22 | 0.00 | 36.54 | 3.16 |
582 | 624 | 4.624015 | CTCCACTAACCGTTGTTAACTGA | 58.376 | 43.478 | 7.22 | 0.00 | 36.54 | 3.41 |
583 | 625 | 4.370917 | TCCACTAACCGTTGTTAACTGAC | 58.629 | 43.478 | 7.22 | 5.04 | 36.54 | 3.51 |
594 | 636 | 2.799978 | TGTTAACTGACACTCACATGCG | 59.200 | 45.455 | 7.22 | 0.00 | 0.00 | 4.73 |
597 | 639 | 3.319137 | AACTGACACTCACATGCGTAT | 57.681 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
598 | 640 | 2.610433 | ACTGACACTCACATGCGTATG | 58.390 | 47.619 | 12.28 | 12.28 | 40.24 | 2.39 |
599 | 641 | 1.929169 | CTGACACTCACATGCGTATGG | 59.071 | 52.381 | 18.03 | 7.00 | 38.66 | 2.74 |
600 | 642 | 1.275010 | TGACACTCACATGCGTATGGT | 59.725 | 47.619 | 18.03 | 5.29 | 38.66 | 3.55 |
601 | 643 | 2.494073 | TGACACTCACATGCGTATGGTA | 59.506 | 45.455 | 18.03 | 4.31 | 38.66 | 3.25 |
602 | 644 | 3.132111 | TGACACTCACATGCGTATGGTAT | 59.868 | 43.478 | 18.03 | 0.00 | 38.66 | 2.73 |
603 | 645 | 3.457234 | ACACTCACATGCGTATGGTATG | 58.543 | 45.455 | 18.03 | 11.92 | 43.56 | 2.39 |
604 | 646 | 2.221749 | CACTCACATGCGTATGGTATGC | 59.778 | 50.000 | 18.03 | 0.00 | 41.89 | 3.14 |
605 | 647 | 1.456923 | CTCACATGCGTATGGTATGCG | 59.543 | 52.381 | 18.03 | 0.00 | 41.89 | 4.73 |
606 | 648 | 1.202475 | TCACATGCGTATGGTATGCGT | 60.202 | 47.619 | 18.03 | 0.00 | 41.89 | 5.24 |
608 | 650 | 3.678921 | ATGCGTATGGTATGCGTGT | 57.321 | 47.368 | 1.65 | 0.00 | 43.55 | 4.49 |
609 | 651 | 1.497991 | ATGCGTATGGTATGCGTGTC | 58.502 | 50.000 | 1.65 | 0.00 | 43.55 | 3.67 |
611 | 653 | 0.868602 | GCGTATGGTATGCGTGTCGT | 60.869 | 55.000 | 1.65 | 0.00 | 40.59 | 4.34 |
612 | 654 | 0.843872 | CGTATGGTATGCGTGTCGTG | 59.156 | 55.000 | 0.00 | 0.00 | 33.59 | 4.35 |
614 | 656 | 1.586578 | GTATGGTATGCGTGTCGTGTG | 59.413 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
622 | 667 | 2.086426 | CGTGTCGTGTGTGGATCCG | 61.086 | 63.158 | 7.39 | 0.00 | 0.00 | 4.18 |
626 | 671 | 3.118454 | CGTGTGTGGATCCGTGGC | 61.118 | 66.667 | 7.39 | 0.00 | 0.00 | 5.01 |
627 | 672 | 2.746277 | GTGTGTGGATCCGTGGCC | 60.746 | 66.667 | 7.39 | 0.00 | 0.00 | 5.36 |
636 | 681 | 1.002087 | GGATCCGTGGCCGATTATTCT | 59.998 | 52.381 | 0.00 | 0.00 | 35.63 | 2.40 |
640 | 685 | 2.295349 | TCCGTGGCCGATTATTCTACTC | 59.705 | 50.000 | 0.00 | 0.00 | 35.63 | 2.59 |
641 | 686 | 2.296471 | CCGTGGCCGATTATTCTACTCT | 59.704 | 50.000 | 0.00 | 0.00 | 35.63 | 3.24 |
642 | 687 | 3.504906 | CCGTGGCCGATTATTCTACTCTA | 59.495 | 47.826 | 0.00 | 0.00 | 35.63 | 2.43 |
654 | 706 | 8.937207 | ATTATTCTACTCTACTGGTCGGTAAT | 57.063 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
658 | 710 | 6.182627 | TCTACTCTACTGGTCGGTAATTTCA | 58.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
659 | 711 | 5.326200 | ACTCTACTGGTCGGTAATTTCAG | 57.674 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
661 | 713 | 5.125739 | ACTCTACTGGTCGGTAATTTCAGAG | 59.874 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
662 | 714 | 2.973945 | ACTGGTCGGTAATTTCAGAGC | 58.026 | 47.619 | 7.31 | 7.31 | 0.00 | 4.09 |
663 | 715 | 2.301870 | ACTGGTCGGTAATTTCAGAGCA | 59.698 | 45.455 | 14.25 | 14.25 | 37.59 | 4.26 |
664 | 716 | 2.932614 | CTGGTCGGTAATTTCAGAGCAG | 59.067 | 50.000 | 22.41 | 22.41 | 45.42 | 4.24 |
665 | 717 | 2.565391 | TGGTCGGTAATTTCAGAGCAGA | 59.435 | 45.455 | 11.77 | 0.00 | 35.80 | 4.26 |
666 | 718 | 2.930682 | GGTCGGTAATTTCAGAGCAGAC | 59.069 | 50.000 | 8.97 | 2.16 | 32.25 | 3.51 |
667 | 719 | 3.585862 | GTCGGTAATTTCAGAGCAGACA | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
668 | 720 | 4.184629 | GTCGGTAATTTCAGAGCAGACAT | 58.815 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
669 | 721 | 4.631813 | GTCGGTAATTTCAGAGCAGACATT | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
670 | 722 | 4.870426 | TCGGTAATTTCAGAGCAGACATTC | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
680 | 732 | 1.487976 | AGCAGACATTCCATCCATCGT | 59.512 | 47.619 | 0.00 | 0.00 | 0.00 | 3.73 |
681 | 733 | 1.600957 | GCAGACATTCCATCCATCGTG | 59.399 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
682 | 734 | 2.910199 | CAGACATTCCATCCATCGTGT | 58.090 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
683 | 735 | 2.868583 | CAGACATTCCATCCATCGTGTC | 59.131 | 50.000 | 0.00 | 0.00 | 36.98 | 3.67 |
684 | 736 | 1.860950 | GACATTCCATCCATCGTGTCG | 59.139 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
690 | 742 | 2.050350 | ATCCATCGTGTCGGTCGGT | 61.050 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
698 | 750 | 1.001269 | TGTCGGTCGGTCCATCTCT | 60.001 | 57.895 | 0.00 | 0.00 | 35.57 | 3.10 |
706 | 758 | 2.202987 | GTCCATCTCTGCCTGCCG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
707 | 759 | 2.364186 | TCCATCTCTGCCTGCCGA | 60.364 | 61.111 | 0.00 | 0.00 | 0.00 | 5.54 |
708 | 760 | 2.202987 | CCATCTCTGCCTGCCGAC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
709 | 761 | 2.584418 | CATCTCTGCCTGCCGACG | 60.584 | 66.667 | 0.00 | 0.00 | 0.00 | 5.12 |
710 | 762 | 2.755876 | ATCTCTGCCTGCCGACGA | 60.756 | 61.111 | 0.00 | 0.00 | 0.00 | 4.20 |
711 | 763 | 2.780094 | ATCTCTGCCTGCCGACGAG | 61.780 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
714 | 766 | 4.749310 | CTGCCTGCCGACGAGCTT | 62.749 | 66.667 | 0.00 | 0.00 | 0.00 | 3.74 |
735 | 788 | 0.671472 | GGCTTGCTTGATTGTTGGCC | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
736 | 789 | 0.319405 | GCTTGCTTGATTGTTGGCCT | 59.681 | 50.000 | 3.32 | 0.00 | 0.00 | 5.19 |
737 | 790 | 1.938016 | GCTTGCTTGATTGTTGGCCTG | 60.938 | 52.381 | 3.32 | 0.00 | 0.00 | 4.85 |
738 | 791 | 0.033781 | TTGCTTGATTGTTGGCCTGC | 59.966 | 50.000 | 3.32 | 0.00 | 0.00 | 4.85 |
743 | 824 | 3.951655 | GATTGTTGGCCTGCGTGCG | 62.952 | 63.158 | 3.32 | 0.00 | 0.00 | 5.34 |
771 | 852 | 2.867472 | CCGCGTCCAATCCAACAC | 59.133 | 61.111 | 4.92 | 0.00 | 0.00 | 3.32 |
772 | 853 | 1.963855 | CCGCGTCCAATCCAACACA | 60.964 | 57.895 | 4.92 | 0.00 | 0.00 | 3.72 |
773 | 854 | 1.497278 | CGCGTCCAATCCAACACAG | 59.503 | 57.895 | 0.00 | 0.00 | 0.00 | 3.66 |
775 | 856 | 1.497278 | CGTCCAATCCAACACAGCG | 59.503 | 57.895 | 0.00 | 0.00 | 0.00 | 5.18 |
776 | 857 | 1.875963 | GTCCAATCCAACACAGCGG | 59.124 | 57.895 | 0.00 | 0.00 | 0.00 | 5.52 |
778 | 859 | 2.267351 | CCAATCCAACACAGCGGCA | 61.267 | 57.895 | 1.45 | 0.00 | 0.00 | 5.69 |
780 | 861 | 2.629656 | AATCCAACACAGCGGCAGC | 61.630 | 57.895 | 0.00 | 0.00 | 45.58 | 5.25 |
797 | 878 | 3.414700 | CGCGTGTGCTGTCCCTTC | 61.415 | 66.667 | 0.00 | 0.00 | 39.65 | 3.46 |
798 | 879 | 2.031163 | GCGTGTGCTGTCCCTTCT | 59.969 | 61.111 | 0.00 | 0.00 | 38.39 | 2.85 |
799 | 880 | 2.029844 | GCGTGTGCTGTCCCTTCTC | 61.030 | 63.158 | 0.00 | 0.00 | 38.39 | 2.87 |
800 | 881 | 1.734477 | CGTGTGCTGTCCCTTCTCG | 60.734 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
801 | 882 | 1.367840 | GTGTGCTGTCCCTTCTCGT | 59.632 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
802 | 883 | 0.667792 | GTGTGCTGTCCCTTCTCGTC | 60.668 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
803 | 884 | 0.827925 | TGTGCTGTCCCTTCTCGTCT | 60.828 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
804 | 885 | 0.109039 | GTGCTGTCCCTTCTCGTCTC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
805 | 886 | 1.251527 | TGCTGTCCCTTCTCGTCTCC | 61.252 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
806 | 887 | 1.803943 | CTGTCCCTTCTCGTCTCCG | 59.196 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
807 | 888 | 0.961358 | CTGTCCCTTCTCGTCTCCGT | 60.961 | 60.000 | 0.00 | 0.00 | 35.01 | 4.69 |
808 | 889 | 0.538977 | TGTCCCTTCTCGTCTCCGTT | 60.539 | 55.000 | 0.00 | 0.00 | 35.01 | 4.44 |
809 | 890 | 0.602060 | GTCCCTTCTCGTCTCCGTTT | 59.398 | 55.000 | 0.00 | 0.00 | 35.01 | 3.60 |
810 | 891 | 1.815003 | GTCCCTTCTCGTCTCCGTTTA | 59.185 | 52.381 | 0.00 | 0.00 | 35.01 | 2.01 |
814 | 895 | 2.748532 | CCTTCTCGTCTCCGTTTAGTCT | 59.251 | 50.000 | 0.00 | 0.00 | 35.01 | 3.24 |
817 | 898 | 2.740981 | TCTCGTCTCCGTTTAGTCTGTC | 59.259 | 50.000 | 0.00 | 0.00 | 35.01 | 3.51 |
855 | 936 | 4.397348 | CGGAGGAAAAGTGGTGGG | 57.603 | 61.111 | 0.00 | 0.00 | 0.00 | 4.61 |
856 | 937 | 1.758592 | CGGAGGAAAAGTGGTGGGA | 59.241 | 57.895 | 0.00 | 0.00 | 0.00 | 4.37 |
857 | 938 | 0.109723 | CGGAGGAAAAGTGGTGGGAA | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
858 | 939 | 1.617322 | GGAGGAAAAGTGGTGGGAAC | 58.383 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
873 | 954 | 1.520787 | GAACCCGTATGCTGGTCCG | 60.521 | 63.158 | 0.00 | 0.00 | 30.64 | 4.79 |
917 | 1015 | 2.031191 | ACACGGCTCAACGTTACAAAAG | 59.969 | 45.455 | 0.00 | 0.00 | 46.25 | 2.27 |
920 | 1018 | 2.223745 | GGCTCAACGTTACAAAAGGGA | 58.776 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
921 | 1019 | 2.225727 | GGCTCAACGTTACAAAAGGGAG | 59.774 | 50.000 | 0.00 | 1.85 | 0.00 | 4.30 |
923 | 1021 | 2.812011 | CTCAACGTTACAAAAGGGAGGG | 59.188 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
924 | 1022 | 2.438763 | TCAACGTTACAAAAGGGAGGGA | 59.561 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
925 | 1023 | 2.812011 | CAACGTTACAAAAGGGAGGGAG | 59.188 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
927 | 1025 | 1.450025 | GTTACAAAAGGGAGGGAGCG | 58.550 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
928 | 1026 | 0.326927 | TTACAAAAGGGAGGGAGCGG | 59.673 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
929 | 1027 | 2.193087 | TACAAAAGGGAGGGAGCGGC | 62.193 | 60.000 | 0.00 | 0.00 | 0.00 | 6.53 |
930 | 1028 | 3.256960 | AAAAGGGAGGGAGCGGCA | 61.257 | 61.111 | 1.45 | 0.00 | 0.00 | 5.69 |
931 | 1029 | 2.840753 | AAAAGGGAGGGAGCGGCAA | 61.841 | 57.895 | 1.45 | 0.00 | 0.00 | 4.52 |
961 | 1074 | 4.643385 | CGCGCACACAACACGGTC | 62.643 | 66.667 | 8.75 | 0.00 | 0.00 | 4.79 |
964 | 1077 | 2.171079 | CGCACACAACACGGTCACT | 61.171 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
966 | 1079 | 0.859232 | GCACACAACACGGTCACTAG | 59.141 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
975 | 1088 | 0.308068 | ACGGTCACTAGCATCGATCG | 59.692 | 55.000 | 9.36 | 9.36 | 39.16 | 3.69 |
976 | 1089 | 0.999228 | CGGTCACTAGCATCGATCGC | 60.999 | 60.000 | 11.09 | 10.63 | 0.00 | 4.58 |
977 | 1090 | 0.664767 | GGTCACTAGCATCGATCGCC | 60.665 | 60.000 | 11.09 | 0.96 | 0.00 | 5.54 |
978 | 1091 | 0.664767 | GTCACTAGCATCGATCGCCC | 60.665 | 60.000 | 11.09 | 0.56 | 0.00 | 6.13 |
979 | 1092 | 0.823769 | TCACTAGCATCGATCGCCCT | 60.824 | 55.000 | 11.09 | 8.61 | 0.00 | 5.19 |
980 | 1093 | 0.665670 | CACTAGCATCGATCGCCCTG | 60.666 | 60.000 | 11.09 | 8.89 | 0.00 | 4.45 |
982 | 1095 | 3.226429 | TAGCATCGATCGCCCTGCC | 62.226 | 63.158 | 24.06 | 12.61 | 35.21 | 4.85 |
985 | 1098 | 1.524621 | CATCGATCGCCCTGCCTTT | 60.525 | 57.895 | 11.09 | 0.00 | 0.00 | 3.11 |
987 | 1100 | 0.815615 | ATCGATCGCCCTGCCTTTTC | 60.816 | 55.000 | 11.09 | 0.00 | 0.00 | 2.29 |
988 | 1101 | 1.745115 | CGATCGCCCTGCCTTTTCA | 60.745 | 57.895 | 0.26 | 0.00 | 0.00 | 2.69 |
994 | 1107 | 1.202521 | CGCCCTGCCTTTTCACTTTTT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
1011 | 1124 | 0.674581 | TTTCAGCCATGCTCTCCACG | 60.675 | 55.000 | 0.00 | 0.00 | 36.40 | 4.94 |
1013 | 1126 | 4.479993 | AGCCATGCTCTCCACGGC | 62.480 | 66.667 | 0.00 | 0.00 | 43.31 | 5.68 |
1089 | 1202 | 2.019951 | CCGGTTCGTCGTGTTCCTG | 61.020 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
1098 | 1211 | 4.778143 | GTGTTCCTGGCCGGCGAT | 62.778 | 66.667 | 22.54 | 0.00 | 0.00 | 4.58 |
1099 | 1212 | 4.776322 | TGTTCCTGGCCGGCGATG | 62.776 | 66.667 | 22.54 | 14.51 | 0.00 | 3.84 |
1121 | 1234 | 4.475135 | GAGGGGAGCTGCCGGTTC | 62.475 | 72.222 | 19.04 | 11.85 | 37.63 | 3.62 |
1124 | 1237 | 4.785453 | GGGAGCTGCCGGTTCCAG | 62.785 | 72.222 | 9.14 | 2.80 | 45.58 | 3.86 |
1425 | 1538 | 4.393155 | TACCTGGCCACGCAGCTG | 62.393 | 66.667 | 10.11 | 10.11 | 0.00 | 4.24 |
1437 | 1550 | 2.125552 | CAGCTGATGACGCCGGAA | 60.126 | 61.111 | 8.42 | 0.00 | 0.00 | 4.30 |
1472 | 1585 | 1.271379 | CTGGGCGATATACGGTAAGCA | 59.729 | 52.381 | 0.00 | 0.00 | 42.83 | 3.91 |
1474 | 1587 | 1.271656 | GGGCGATATACGGTAAGCACT | 59.728 | 52.381 | 0.00 | 0.00 | 42.83 | 4.40 |
2007 | 2129 | 0.322277 | TCGGCGAGGAGTAAGTGTCT | 60.322 | 55.000 | 4.99 | 0.00 | 0.00 | 3.41 |
2010 | 2132 | 2.089980 | GGCGAGGAGTAAGTGTCTGTA | 58.910 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
2011 | 2133 | 2.688958 | GGCGAGGAGTAAGTGTCTGTAT | 59.311 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2016 | 2147 | 6.427547 | GCGAGGAGTAAGTGTCTGTATAGTAT | 59.572 | 42.308 | 0.00 | 0.00 | 0.00 | 2.12 |
2034 | 2166 | 5.536554 | AGTATGTTGCTTCTGAATTCACG | 57.463 | 39.130 | 3.38 | 1.39 | 0.00 | 4.35 |
2035 | 2167 | 2.686558 | TGTTGCTTCTGAATTCACGC | 57.313 | 45.000 | 3.38 | 8.21 | 0.00 | 5.34 |
2046 | 2178 | 3.932580 | ATTCACGCGCTCTTGCCGA | 62.933 | 57.895 | 5.73 | 0.00 | 36.92 | 5.54 |
2049 | 2181 | 4.435436 | ACGCGCTCTTGCCGATGA | 62.435 | 61.111 | 5.73 | 0.00 | 36.92 | 2.92 |
2065 | 2197 | 3.797451 | GATGACTGCTCATCTCTGACA | 57.203 | 47.619 | 8.35 | 0.00 | 46.66 | 3.58 |
2095 | 2227 | 2.997315 | CACAGTGCGAGGAGGGGA | 60.997 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
2127 | 2259 | 2.818132 | GCAGGACGAGCTAGCCAT | 59.182 | 61.111 | 12.13 | 0.00 | 0.00 | 4.40 |
2164 | 2296 | 4.814294 | GACATCTTCGCCGGCCGT | 62.814 | 66.667 | 26.12 | 8.47 | 38.35 | 5.68 |
2230 | 2362 | 1.821666 | GCCAGGGCCTACTTCAAACAA | 60.822 | 52.381 | 5.28 | 0.00 | 34.56 | 2.83 |
2332 | 2502 | 7.481275 | TCAAAAATTCTCAGCCAAAAATGTC | 57.519 | 32.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2335 | 2505 | 7.862512 | AAAATTCTCAGCCAAAAATGTCAAA | 57.137 | 28.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2336 | 2506 | 8.454570 | AAAATTCTCAGCCAAAAATGTCAAAT | 57.545 | 26.923 | 0.00 | 0.00 | 0.00 | 2.32 |
2337 | 2507 | 8.454570 | AAATTCTCAGCCAAAAATGTCAAATT | 57.545 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
2338 | 2508 | 7.662604 | ATTCTCAGCCAAAAATGTCAAATTC | 57.337 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2565 | 2735 | 0.459585 | GAGGCGCCGTTGATCAGTTA | 60.460 | 55.000 | 23.20 | 0.00 | 0.00 | 2.24 |
2585 | 2755 | 6.017440 | CAGTTAGCTCTGATCCTCTAGTGTAC | 60.017 | 46.154 | 0.00 | 0.00 | 37.61 | 2.90 |
2587 | 2757 | 5.897851 | AGCTCTGATCCTCTAGTGTACTA | 57.102 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2588 | 2758 | 5.617252 | AGCTCTGATCCTCTAGTGTACTAC | 58.383 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
2590 | 2760 | 5.699458 | GCTCTGATCCTCTAGTGTACTACTC | 59.301 | 48.000 | 0.00 | 0.00 | 40.89 | 2.59 |
2591 | 2761 | 6.177310 | TCTGATCCTCTAGTGTACTACTCC | 57.823 | 45.833 | 0.00 | 0.00 | 40.89 | 3.85 |
2593 | 2763 | 4.976442 | TGATCCTCTAGTGTACTACTCCCT | 59.024 | 45.833 | 0.00 | 0.00 | 40.89 | 4.20 |
2594 | 2764 | 5.072058 | TGATCCTCTAGTGTACTACTCCCTC | 59.928 | 48.000 | 0.00 | 0.00 | 40.89 | 4.30 |
2595 | 2765 | 3.715834 | TCCTCTAGTGTACTACTCCCTCC | 59.284 | 52.174 | 0.00 | 0.00 | 40.89 | 4.30 |
2596 | 2766 | 3.494749 | CCTCTAGTGTACTACTCCCTCCG | 60.495 | 56.522 | 0.00 | 0.00 | 40.89 | 4.63 |
2597 | 2767 | 3.110705 | TCTAGTGTACTACTCCCTCCGT | 58.889 | 50.000 | 0.00 | 0.00 | 40.89 | 4.69 |
2598 | 2768 | 2.895242 | AGTGTACTACTCCCTCCGTT | 57.105 | 50.000 | 0.00 | 0.00 | 33.17 | 4.44 |
2599 | 2769 | 2.720915 | AGTGTACTACTCCCTCCGTTC | 58.279 | 52.381 | 0.00 | 0.00 | 33.17 | 3.95 |
2601 | 2771 | 1.341383 | TGTACTACTCCCTCCGTTCCC | 60.341 | 57.143 | 0.00 | 0.00 | 0.00 | 3.97 |
2603 | 2773 | 0.115745 | ACTACTCCCTCCGTTCCCAA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2605 | 2775 | 1.838077 | CTACTCCCTCCGTTCCCAAAT | 59.162 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
2607 | 2777 | 2.488836 | ACTCCCTCCGTTCCCAAATAT | 58.511 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
2609 | 2779 | 4.042174 | ACTCCCTCCGTTCCCAAATATAA | 58.958 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
2610 | 2780 | 4.102681 | ACTCCCTCCGTTCCCAAATATAAG | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
2611 | 2781 | 4.042174 | TCCCTCCGTTCCCAAATATAAGT | 58.958 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2613 | 2783 | 4.102681 | CCCTCCGTTCCCAAATATAAGTCT | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
2614 | 2784 | 5.397559 | CCCTCCGTTCCCAAATATAAGTCTT | 60.398 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2615 | 2785 | 6.120220 | CCTCCGTTCCCAAATATAAGTCTTT | 58.880 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2616 | 2786 | 6.260271 | CCTCCGTTCCCAAATATAAGTCTTTC | 59.740 | 42.308 | 0.00 | 0.00 | 0.00 | 2.62 |
2617 | 2787 | 6.954232 | TCCGTTCCCAAATATAAGTCTTTCT | 58.046 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2618 | 2788 | 8.081517 | TCCGTTCCCAAATATAAGTCTTTCTA | 57.918 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2619 | 2789 | 8.202137 | TCCGTTCCCAAATATAAGTCTTTCTAG | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2620 | 2790 | 8.202137 | CCGTTCCCAAATATAAGTCTTTCTAGA | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2634 | 2804 | 9.921637 | AAGTCTTTCTAGAGATTCTAACAAGTG | 57.078 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2635 | 2805 | 9.303116 | AGTCTTTCTAGAGATTCTAACAAGTGA | 57.697 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2636 | 2806 | 9.349145 | GTCTTTCTAGAGATTCTAACAAGTGAC | 57.651 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
2637 | 2807 | 9.303116 | TCTTTCTAGAGATTCTAACAAGTGACT | 57.697 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2640 | 2810 | 9.516546 | TTCTAGAGATTCTAACAAGTGACTACA | 57.483 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2641 | 2811 | 9.688091 | TCTAGAGATTCTAACAAGTGACTACAT | 57.312 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2644 | 2814 | 9.244292 | AGAGATTCTAACAAGTGACTACATACA | 57.756 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2709 | 2879 | 8.918202 | ATACATCCGTATGTTATTGTCCATTT | 57.082 | 30.769 | 0.00 | 0.00 | 44.07 | 2.32 |
2710 | 2880 | 7.026631 | ACATCCGTATGTTATTGTCCATTTG | 57.973 | 36.000 | 0.00 | 0.00 | 44.07 | 2.32 |
2711 | 2881 | 6.826231 | ACATCCGTATGTTATTGTCCATTTGA | 59.174 | 34.615 | 0.00 | 0.00 | 44.07 | 2.69 |
2712 | 2882 | 7.338196 | ACATCCGTATGTTATTGTCCATTTGAA | 59.662 | 33.333 | 0.00 | 0.00 | 44.07 | 2.69 |
2713 | 2883 | 7.689446 | TCCGTATGTTATTGTCCATTTGAAA | 57.311 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2714 | 2884 | 8.287439 | TCCGTATGTTATTGTCCATTTGAAAT | 57.713 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
2715 | 2885 | 8.187480 | TCCGTATGTTATTGTCCATTTGAAATG | 58.813 | 33.333 | 10.84 | 10.84 | 0.00 | 2.32 |
2716 | 2886 | 7.973388 | CCGTATGTTATTGTCCATTTGAAATGT | 59.027 | 33.333 | 15.93 | 0.74 | 0.00 | 2.71 |
2717 | 2887 | 9.009327 | CGTATGTTATTGTCCATTTGAAATGTC | 57.991 | 33.333 | 15.93 | 9.53 | 0.00 | 3.06 |
2726 | 2896 | 9.528018 | TTGTCCATTTGAAATGTCTAAAAAGAC | 57.472 | 29.630 | 15.93 | 12.86 | 39.15 | 3.01 |
2727 | 2897 | 8.912988 | TGTCCATTTGAAATGTCTAAAAAGACT | 58.087 | 29.630 | 15.93 | 0.00 | 39.41 | 3.24 |
2728 | 2898 | 9.750125 | GTCCATTTGAAATGTCTAAAAAGACTT | 57.250 | 29.630 | 15.93 | 0.00 | 39.41 | 3.01 |
2746 | 2916 | 9.868160 | AAAAGACTTATATTTAGGAATGGAGGG | 57.132 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
2747 | 2917 | 8.814448 | AAGACTTATATTTAGGAATGGAGGGA | 57.186 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
2748 | 2918 | 8.442660 | AGACTTATATTTAGGAATGGAGGGAG | 57.557 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2749 | 2919 | 8.019652 | AGACTTATATTTAGGAATGGAGGGAGT | 58.980 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
2750 | 2920 | 9.322769 | GACTTATATTTAGGAATGGAGGGAGTA | 57.677 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2751 | 2921 | 9.327731 | ACTTATATTTAGGAATGGAGGGAGTAG | 57.672 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2752 | 2922 | 9.327731 | CTTATATTTAGGAATGGAGGGAGTAGT | 57.672 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2754 | 2924 | 6.997942 | ATTTAGGAATGGAGGGAGTAGTAC | 57.002 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
2755 | 2925 | 5.745988 | TTAGGAATGGAGGGAGTAGTACT | 57.254 | 43.478 | 1.37 | 1.37 | 0.00 | 2.73 |
2793 | 2963 | 8.414003 | TGATGTACAGTACAGATTTAAGCTAGG | 58.586 | 37.037 | 18.30 | 0.00 | 42.77 | 3.02 |
2805 | 2975 | 5.693769 | TTTAAGCTAGGCCTTGTGAGTAT | 57.306 | 39.130 | 12.58 | 0.00 | 0.00 | 2.12 |
2807 | 2977 | 2.472029 | AGCTAGGCCTTGTGAGTATGT | 58.528 | 47.619 | 12.58 | 0.00 | 0.00 | 2.29 |
2897 | 3067 | 8.946085 | GGTGAAAACAGAGATGTATTCATTGTA | 58.054 | 33.333 | 0.00 | 0.00 | 34.06 | 2.41 |
2912 | 3082 | 4.454678 | TCATTGTAGATGGTCATCTTGGC | 58.545 | 43.478 | 17.28 | 9.74 | 45.31 | 4.52 |
2940 | 3111 | 1.625818 | GTGGGGTATCTATCTGCAGGG | 59.374 | 57.143 | 15.13 | 4.92 | 0.00 | 4.45 |
2978 | 3149 | 7.915508 | TGCAATCACTAATTATTTAGTCCACG | 58.084 | 34.615 | 7.00 | 0.00 | 44.94 | 4.94 |
2999 | 3170 | 3.440173 | CGGTACTGAAAATGGCAAGTGAT | 59.560 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
3000 | 3171 | 4.082787 | CGGTACTGAAAATGGCAAGTGATT | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3001 | 3172 | 5.163513 | GGTACTGAAAATGGCAAGTGATTG | 58.836 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
3002 | 3173 | 4.261578 | ACTGAAAATGGCAAGTGATTGG | 57.738 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
3003 | 3174 | 3.642848 | ACTGAAAATGGCAAGTGATTGGT | 59.357 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
3004 | 3175 | 4.240096 | CTGAAAATGGCAAGTGATTGGTC | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
3005 | 3176 | 3.006752 | TGAAAATGGCAAGTGATTGGTCC | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 4.46 |
3006 | 3177 | 2.307496 | AATGGCAAGTGATTGGTCCA | 57.693 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3007 | 3178 | 2.537633 | ATGGCAAGTGATTGGTCCAT | 57.462 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3008 | 3179 | 2.307496 | TGGCAAGTGATTGGTCCATT | 57.693 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3009 | 3180 | 2.607499 | TGGCAAGTGATTGGTCCATTT | 58.393 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
3010 | 3181 | 2.299582 | TGGCAAGTGATTGGTCCATTTG | 59.700 | 45.455 | 0.00 | 0.00 | 35.29 | 2.32 |
3011 | 3182 | 2.562298 | GGCAAGTGATTGGTCCATTTGA | 59.438 | 45.455 | 0.00 | 0.00 | 34.46 | 2.69 |
3083 | 3267 | 4.400567 | CACCAAGAAAGATTTCCATCCCTC | 59.599 | 45.833 | 1.73 | 0.00 | 37.92 | 4.30 |
3084 | 3268 | 3.629398 | CCAAGAAAGATTTCCATCCCTCG | 59.371 | 47.826 | 1.73 | 0.00 | 37.92 | 4.63 |
3249 | 3442 | 0.178301 | TGGTCGTGTGGTTGCAACTA | 59.822 | 50.000 | 27.64 | 20.61 | 0.00 | 2.24 |
3293 | 3486 | 2.557056 | CCTCAACGACACCTTGTCTAGA | 59.443 | 50.000 | 4.87 | 0.00 | 44.85 | 2.43 |
3354 | 3547 | 5.590818 | TCCATTCACTAGAGGTAGGTCTTT | 58.409 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3370 | 3563 | 2.808543 | GTCTTTGAAGTGACCGCTGAAT | 59.191 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3372 | 3565 | 2.839486 | TTGAAGTGACCGCTGAATCT | 57.161 | 45.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3388 | 3602 | 6.345298 | GCTGAATCTTAACCTAGAAGCTTCT | 58.655 | 40.000 | 30.63 | 30.63 | 41.24 | 2.85 |
3394 | 3608 | 9.746457 | AATCTTAACCTAGAAGCTTCTGAAATT | 57.254 | 29.630 | 34.26 | 23.97 | 38.19 | 1.82 |
3406 | 3620 | 5.471456 | AGCTTCTGAAATTACTCCAACAGTG | 59.529 | 40.000 | 0.00 | 0.00 | 36.43 | 3.66 |
3411 | 3625 | 5.556915 | TGAAATTACTCCAACAGTGTAGGG | 58.443 | 41.667 | 0.00 | 1.37 | 36.43 | 3.53 |
3422 | 3636 | 1.002087 | CAGTGTAGGGGTCCTCACAAC | 59.998 | 57.143 | 14.29 | 0.00 | 35.60 | 3.32 |
3463 | 3678 | 3.879295 | TCGATGAAATCTTGGATCAAGGC | 59.121 | 43.478 | 7.67 | 0.00 | 42.58 | 4.35 |
3484 | 3699 | 2.846827 | CCTCCTCTTACTTTCCCCACAT | 59.153 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
3492 | 3707 | 7.086685 | TCTTACTTTCCCCACATAGAGTTTT | 57.913 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3501 | 3716 | 9.816787 | TTCCCCACATAGAGTTTTTAACTTATT | 57.183 | 29.630 | 0.00 | 0.00 | 43.03 | 1.40 |
3503 | 3718 | 9.020731 | CCCCACATAGAGTTTTTAACTTATTGT | 57.979 | 33.333 | 0.00 | 0.00 | 43.03 | 2.71 |
3540 | 3755 | 8.154856 | TCTTAGGTCACTAATGTTGTTTAGCTT | 58.845 | 33.333 | 0.00 | 0.00 | 38.44 | 3.74 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.334054 | ACTTCCCTGCCCTGCCTC | 61.334 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
1 | 2 | 3.655211 | CACTTCCCTGCCCTGCCT | 61.655 | 66.667 | 0.00 | 0.00 | 0.00 | 4.75 |
2 | 3 | 3.210012 | TTCACTTCCCTGCCCTGCC | 62.210 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
6 | 7 | 2.361737 | GCCTTCACTTCCCTGCCC | 60.362 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
8 | 9 | 2.747855 | CGGCCTTCACTTCCCTGC | 60.748 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
9 | 10 | 1.376037 | GACGGCCTTCACTTCCCTG | 60.376 | 63.158 | 3.96 | 0.00 | 0.00 | 4.45 |
10 | 11 | 2.943978 | CGACGGCCTTCACTTCCCT | 61.944 | 63.158 | 10.24 | 0.00 | 0.00 | 4.20 |
11 | 12 | 2.434359 | CGACGGCCTTCACTTCCC | 60.434 | 66.667 | 10.24 | 0.00 | 0.00 | 3.97 |
12 | 13 | 3.119096 | GCGACGGCCTTCACTTCC | 61.119 | 66.667 | 10.24 | 0.00 | 0.00 | 3.46 |
25 | 26 | 2.202756 | GAGGTGATGGACGGCGAC | 60.203 | 66.667 | 16.62 | 7.58 | 0.00 | 5.19 |
26 | 27 | 3.822192 | CGAGGTGATGGACGGCGA | 61.822 | 66.667 | 16.62 | 0.00 | 0.00 | 5.54 |
28 | 29 | 4.148825 | AGCGAGGTGATGGACGGC | 62.149 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
29 | 30 | 2.202797 | CAGCGAGGTGATGGACGG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
30 | 31 | 2.887568 | GCAGCGAGGTGATGGACG | 60.888 | 66.667 | 6.46 | 0.00 | 33.55 | 4.79 |
31 | 32 | 1.520342 | GAGCAGCGAGGTGATGGAC | 60.520 | 63.158 | 6.46 | 0.00 | 33.55 | 4.02 |
32 | 33 | 2.725312 | GGAGCAGCGAGGTGATGGA | 61.725 | 63.158 | 6.46 | 0.00 | 33.55 | 3.41 |
33 | 34 | 2.202987 | GGAGCAGCGAGGTGATGG | 60.203 | 66.667 | 6.46 | 0.00 | 33.55 | 3.51 |
34 | 35 | 2.584418 | CGGAGCAGCGAGGTGATG | 60.584 | 66.667 | 6.46 | 0.00 | 36.94 | 3.07 |
47 | 48 | 4.680237 | TGCACTTGGACGGCGGAG | 62.680 | 66.667 | 13.24 | 6.07 | 0.00 | 4.63 |
48 | 49 | 4.680237 | CTGCACTTGGACGGCGGA | 62.680 | 66.667 | 13.24 | 0.00 | 35.98 | 5.54 |
49 | 50 | 4.680237 | TCTGCACTTGGACGGCGG | 62.680 | 66.667 | 13.24 | 0.00 | 35.25 | 6.13 |
50 | 51 | 3.114616 | CTCTGCACTTGGACGGCG | 61.115 | 66.667 | 4.80 | 4.80 | 0.00 | 6.46 |
51 | 52 | 3.426568 | GCTCTGCACTTGGACGGC | 61.427 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
52 | 53 | 2.031012 | TGCTCTGCACTTGGACGG | 59.969 | 61.111 | 0.00 | 0.00 | 31.71 | 4.79 |
53 | 54 | 2.031516 | CCTGCTCTGCACTTGGACG | 61.032 | 63.158 | 0.00 | 0.00 | 33.79 | 4.79 |
54 | 55 | 2.331132 | GCCTGCTCTGCACTTGGAC | 61.331 | 63.158 | 1.30 | 0.00 | 33.79 | 4.02 |
55 | 56 | 2.033141 | GCCTGCTCTGCACTTGGA | 59.967 | 61.111 | 1.30 | 0.00 | 33.79 | 3.53 |
56 | 57 | 3.429141 | CGCCTGCTCTGCACTTGG | 61.429 | 66.667 | 0.00 | 0.00 | 33.79 | 3.61 |
57 | 58 | 3.429141 | CCGCCTGCTCTGCACTTG | 61.429 | 66.667 | 0.00 | 0.00 | 33.79 | 3.16 |
74 | 75 | 4.162690 | ATCCGGCGGGTGAAGAGC | 62.163 | 66.667 | 27.98 | 0.00 | 33.83 | 4.09 |
75 | 76 | 2.202932 | CATCCGGCGGGTGAAGAG | 60.203 | 66.667 | 34.95 | 6.14 | 33.83 | 2.85 |
76 | 77 | 4.467084 | GCATCCGGCGGGTGAAGA | 62.467 | 66.667 | 41.23 | 14.98 | 33.83 | 2.87 |
233 | 234 | 5.578776 | TCTTGTCGCCTTTCTTTCTTTTTC | 58.421 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
238 | 239 | 2.550180 | GCTTCTTGTCGCCTTTCTTTCT | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
239 | 240 | 2.350868 | GGCTTCTTGTCGCCTTTCTTTC | 60.351 | 50.000 | 0.00 | 0.00 | 42.98 | 2.62 |
243 | 244 | 0.238553 | GTGGCTTCTTGTCGCCTTTC | 59.761 | 55.000 | 0.00 | 0.00 | 46.42 | 2.62 |
244 | 245 | 1.507141 | CGTGGCTTCTTGTCGCCTTT | 61.507 | 55.000 | 0.00 | 0.00 | 46.42 | 3.11 |
248 | 249 | 1.347817 | CTCTCGTGGCTTCTTGTCGC | 61.348 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
250 | 251 | 1.347817 | CGCTCTCGTGGCTTCTTGTC | 61.348 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
255 | 256 | 2.507324 | GTCCGCTCTCGTGGCTTC | 60.507 | 66.667 | 0.00 | 0.00 | 40.70 | 3.86 |
335 | 336 | 3.991051 | AGACACGTGGACGCTGGG | 61.991 | 66.667 | 21.57 | 0.00 | 44.43 | 4.45 |
409 | 440 | 3.244665 | ACGTGGATCATGTATGGATGCAT | 60.245 | 43.478 | 4.68 | 4.68 | 43.48 | 3.96 |
410 | 441 | 2.104622 | ACGTGGATCATGTATGGATGCA | 59.895 | 45.455 | 0.00 | 0.00 | 40.21 | 3.96 |
411 | 442 | 2.738846 | GACGTGGATCATGTATGGATGC | 59.261 | 50.000 | 0.00 | 0.00 | 33.38 | 3.91 |
415 | 446 | 1.783284 | CGGACGTGGATCATGTATGG | 58.217 | 55.000 | 0.00 | 0.00 | 33.38 | 2.74 |
419 | 450 | 2.202743 | CGCGGACGTGGATCATGT | 60.203 | 61.111 | 0.00 | 0.00 | 36.19 | 3.21 |
487 | 529 | 1.519455 | CAGCACCGAACCGATCTCC | 60.519 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
488 | 530 | 1.519455 | CCAGCACCGAACCGATCTC | 60.519 | 63.158 | 0.00 | 0.00 | 0.00 | 2.75 |
489 | 531 | 2.227089 | GACCAGCACCGAACCGATCT | 62.227 | 60.000 | 0.00 | 0.00 | 0.00 | 2.75 |
490 | 532 | 1.810030 | GACCAGCACCGAACCGATC | 60.810 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
491 | 533 | 2.107041 | TTGACCAGCACCGAACCGAT | 62.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
492 | 534 | 2.107041 | ATTGACCAGCACCGAACCGA | 62.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
493 | 535 | 1.671054 | ATTGACCAGCACCGAACCG | 60.671 | 57.895 | 0.00 | 0.00 | 0.00 | 4.44 |
494 | 536 | 1.586154 | CCATTGACCAGCACCGAACC | 61.586 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
527 | 569 | 4.217767 | TGATATCACTACTATCACACCGGC | 59.782 | 45.833 | 0.00 | 0.00 | 32.13 | 6.13 |
529 | 571 | 6.071896 | ACCATGATATCACTACTATCACACCG | 60.072 | 42.308 | 7.78 | 0.00 | 38.16 | 4.94 |
530 | 572 | 7.093354 | CACCATGATATCACTACTATCACACC | 58.907 | 42.308 | 7.78 | 0.00 | 38.16 | 4.16 |
531 | 573 | 7.093354 | CCACCATGATATCACTACTATCACAC | 58.907 | 42.308 | 7.78 | 0.00 | 38.16 | 3.82 |
532 | 574 | 6.782494 | ACCACCATGATATCACTACTATCACA | 59.218 | 38.462 | 7.78 | 0.00 | 38.16 | 3.58 |
533 | 575 | 7.233389 | ACCACCATGATATCACTACTATCAC | 57.767 | 40.000 | 7.78 | 0.00 | 38.16 | 3.06 |
535 | 577 | 6.591834 | GCAACCACCATGATATCACTACTATC | 59.408 | 42.308 | 7.78 | 0.00 | 0.00 | 2.08 |
536 | 578 | 6.270927 | AGCAACCACCATGATATCACTACTAT | 59.729 | 38.462 | 7.78 | 0.00 | 0.00 | 2.12 |
537 | 579 | 5.602561 | AGCAACCACCATGATATCACTACTA | 59.397 | 40.000 | 7.78 | 0.00 | 0.00 | 1.82 |
538 | 580 | 4.410228 | AGCAACCACCATGATATCACTACT | 59.590 | 41.667 | 7.78 | 0.00 | 0.00 | 2.57 |
539 | 581 | 4.708177 | AGCAACCACCATGATATCACTAC | 58.292 | 43.478 | 7.78 | 0.00 | 0.00 | 2.73 |
540 | 582 | 4.202357 | GGAGCAACCACCATGATATCACTA | 60.202 | 45.833 | 7.78 | 0.00 | 38.79 | 2.74 |
541 | 583 | 3.434167 | GGAGCAACCACCATGATATCACT | 60.434 | 47.826 | 7.78 | 0.00 | 38.79 | 3.41 |
542 | 584 | 2.880890 | GGAGCAACCACCATGATATCAC | 59.119 | 50.000 | 7.78 | 0.00 | 38.79 | 3.06 |
543 | 585 | 2.509131 | TGGAGCAACCACCATGATATCA | 59.491 | 45.455 | 8.10 | 8.10 | 44.64 | 2.15 |
544 | 586 | 3.213206 | TGGAGCAACCACCATGATATC | 57.787 | 47.619 | 0.00 | 0.00 | 44.64 | 1.63 |
559 | 601 | 3.185797 | CAGTTAACAACGGTTAGTGGAGC | 59.814 | 47.826 | 8.61 | 0.00 | 40.40 | 4.70 |
570 | 612 | 4.761745 | CATGTGAGTGTCAGTTAACAACG | 58.238 | 43.478 | 8.61 | 0.00 | 36.23 | 4.10 |
572 | 614 | 3.247411 | CGCATGTGAGTGTCAGTTAACAA | 59.753 | 43.478 | 8.61 | 0.00 | 0.00 | 2.83 |
573 | 615 | 2.799978 | CGCATGTGAGTGTCAGTTAACA | 59.200 | 45.455 | 8.61 | 0.99 | 0.00 | 2.41 |
574 | 616 | 2.800544 | ACGCATGTGAGTGTCAGTTAAC | 59.199 | 45.455 | 14.43 | 0.00 | 0.00 | 2.01 |
575 | 617 | 3.106242 | ACGCATGTGAGTGTCAGTTAA | 57.894 | 42.857 | 14.43 | 0.00 | 0.00 | 2.01 |
580 | 622 | 1.275010 | ACCATACGCATGTGAGTGTCA | 59.725 | 47.619 | 14.43 | 0.00 | 33.64 | 3.58 |
581 | 623 | 2.010145 | ACCATACGCATGTGAGTGTC | 57.990 | 50.000 | 14.43 | 0.00 | 33.64 | 3.67 |
582 | 624 | 3.457234 | CATACCATACGCATGTGAGTGT | 58.543 | 45.455 | 14.43 | 6.95 | 36.08 | 3.55 |
583 | 625 | 2.221749 | GCATACCATACGCATGTGAGTG | 59.778 | 50.000 | 14.43 | 10.56 | 0.00 | 3.51 |
594 | 636 | 1.586578 | CACACGACACGCATACCATAC | 59.413 | 52.381 | 0.00 | 0.00 | 0.00 | 2.39 |
597 | 639 | 0.941936 | CACACACGACACGCATACCA | 60.942 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
598 | 640 | 1.623081 | CCACACACGACACGCATACC | 61.623 | 60.000 | 0.00 | 0.00 | 0.00 | 2.73 |
599 | 641 | 0.665068 | TCCACACACGACACGCATAC | 60.665 | 55.000 | 0.00 | 0.00 | 0.00 | 2.39 |
600 | 642 | 0.245266 | ATCCACACACGACACGCATA | 59.755 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
601 | 643 | 1.005037 | ATCCACACACGACACGCAT | 60.005 | 52.632 | 0.00 | 0.00 | 0.00 | 4.73 |
602 | 644 | 1.663388 | GATCCACACACGACACGCA | 60.663 | 57.895 | 0.00 | 0.00 | 0.00 | 5.24 |
603 | 645 | 2.380410 | GGATCCACACACGACACGC | 61.380 | 63.158 | 6.95 | 0.00 | 0.00 | 5.34 |
604 | 646 | 2.086426 | CGGATCCACACACGACACG | 61.086 | 63.158 | 13.41 | 0.00 | 0.00 | 4.49 |
605 | 647 | 1.006571 | ACGGATCCACACACGACAC | 60.007 | 57.895 | 13.41 | 0.00 | 0.00 | 3.67 |
606 | 648 | 1.006688 | CACGGATCCACACACGACA | 60.007 | 57.895 | 13.41 | 0.00 | 0.00 | 4.35 |
607 | 649 | 1.736645 | CCACGGATCCACACACGAC | 60.737 | 63.158 | 13.41 | 0.00 | 0.00 | 4.34 |
608 | 650 | 2.654289 | CCACGGATCCACACACGA | 59.346 | 61.111 | 13.41 | 0.00 | 0.00 | 4.35 |
609 | 651 | 3.118454 | GCCACGGATCCACACACG | 61.118 | 66.667 | 13.41 | 0.00 | 0.00 | 4.49 |
611 | 653 | 4.386951 | CGGCCACGGATCCACACA | 62.387 | 66.667 | 13.41 | 0.00 | 36.18 | 3.72 |
612 | 654 | 2.869503 | AATCGGCCACGGATCCACAC | 62.870 | 60.000 | 13.41 | 0.00 | 41.39 | 3.82 |
614 | 656 | 0.034896 | ATAATCGGCCACGGATCCAC | 59.965 | 55.000 | 13.41 | 0.00 | 41.39 | 4.02 |
622 | 667 | 5.462405 | CAGTAGAGTAGAATAATCGGCCAC | 58.538 | 45.833 | 2.24 | 0.00 | 41.24 | 5.01 |
626 | 671 | 5.106634 | CCGACCAGTAGAGTAGAATAATCGG | 60.107 | 48.000 | 0.00 | 0.00 | 41.24 | 4.18 |
627 | 672 | 5.469421 | ACCGACCAGTAGAGTAGAATAATCG | 59.531 | 44.000 | 0.00 | 0.00 | 41.24 | 3.34 |
636 | 681 | 6.182627 | TCTGAAATTACCGACCAGTAGAGTA | 58.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
640 | 685 | 4.113354 | GCTCTGAAATTACCGACCAGTAG | 58.887 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
641 | 686 | 3.512329 | TGCTCTGAAATTACCGACCAGTA | 59.488 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
642 | 687 | 2.301870 | TGCTCTGAAATTACCGACCAGT | 59.698 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
654 | 706 | 3.009363 | TGGATGGAATGTCTGCTCTGAAA | 59.991 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
658 | 710 | 2.224233 | CGATGGATGGAATGTCTGCTCT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
659 | 711 | 2.141517 | CGATGGATGGAATGTCTGCTC | 58.858 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
661 | 713 | 1.600957 | CACGATGGATGGAATGTCTGC | 59.399 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
662 | 714 | 2.868583 | GACACGATGGATGGAATGTCTG | 59.131 | 50.000 | 0.00 | 0.00 | 34.86 | 3.51 |
663 | 715 | 2.481969 | CGACACGATGGATGGAATGTCT | 60.482 | 50.000 | 0.00 | 0.00 | 35.41 | 3.41 |
664 | 716 | 1.860950 | CGACACGATGGATGGAATGTC | 59.139 | 52.381 | 0.00 | 0.00 | 34.46 | 3.06 |
665 | 717 | 1.473257 | CCGACACGATGGATGGAATGT | 60.473 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
666 | 718 | 1.220529 | CCGACACGATGGATGGAATG | 58.779 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
667 | 719 | 0.830648 | ACCGACACGATGGATGGAAT | 59.169 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
668 | 720 | 0.174845 | GACCGACACGATGGATGGAA | 59.825 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
669 | 721 | 1.813859 | GACCGACACGATGGATGGA | 59.186 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
670 | 722 | 1.588932 | CGACCGACACGATGGATGG | 60.589 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
680 | 732 | 1.001269 | AGAGATGGACCGACCGACA | 60.001 | 57.895 | 0.00 | 0.00 | 42.61 | 4.35 |
681 | 733 | 1.433879 | CAGAGATGGACCGACCGAC | 59.566 | 63.158 | 0.00 | 0.00 | 42.61 | 4.79 |
682 | 734 | 2.415608 | GCAGAGATGGACCGACCGA | 61.416 | 63.158 | 0.00 | 0.00 | 42.61 | 4.69 |
683 | 735 | 2.105128 | GCAGAGATGGACCGACCG | 59.895 | 66.667 | 0.00 | 0.00 | 42.61 | 4.79 |
684 | 736 | 2.060980 | AGGCAGAGATGGACCGACC | 61.061 | 63.158 | 0.00 | 0.00 | 39.54 | 4.79 |
690 | 742 | 2.364186 | TCGGCAGGCAGAGATGGA | 60.364 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
711 | 763 | 0.319405 | ACAATCAAGCAAGCCCAAGC | 59.681 | 50.000 | 0.00 | 0.00 | 40.32 | 4.01 |
712 | 764 | 2.409975 | CAACAATCAAGCAAGCCCAAG | 58.590 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
714 | 766 | 0.680618 | CCAACAATCAAGCAAGCCCA | 59.319 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
715 | 767 | 0.671472 | GCCAACAATCAAGCAAGCCC | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
716 | 768 | 0.671472 | GGCCAACAATCAAGCAAGCC | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
717 | 769 | 0.319405 | AGGCCAACAATCAAGCAAGC | 59.681 | 50.000 | 5.01 | 0.00 | 0.00 | 4.01 |
718 | 770 | 1.938016 | GCAGGCCAACAATCAAGCAAG | 60.938 | 52.381 | 5.01 | 0.00 | 0.00 | 4.01 |
722 | 775 | 0.387622 | CACGCAGGCCAACAATCAAG | 60.388 | 55.000 | 5.01 | 0.00 | 0.00 | 3.02 |
726 | 779 | 4.041917 | CGCACGCAGGCCAACAAT | 62.042 | 61.111 | 5.01 | 0.00 | 0.00 | 2.71 |
754 | 835 | 1.911293 | CTGTGTTGGATTGGACGCGG | 61.911 | 60.000 | 12.47 | 0.00 | 0.00 | 6.46 |
762 | 843 | 2.629656 | GCTGCCGCTGTGTTGGATT | 61.630 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
763 | 844 | 3.058160 | GCTGCCGCTGTGTTGGAT | 61.058 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
780 | 861 | 3.414700 | GAAGGGACAGCACACGCG | 61.415 | 66.667 | 3.53 | 3.53 | 45.49 | 6.01 |
781 | 862 | 2.029844 | GAGAAGGGACAGCACACGC | 61.030 | 63.158 | 0.00 | 0.00 | 38.99 | 5.34 |
782 | 863 | 1.734477 | CGAGAAGGGACAGCACACG | 60.734 | 63.158 | 0.00 | 0.00 | 0.00 | 4.49 |
783 | 864 | 0.667792 | GACGAGAAGGGACAGCACAC | 60.668 | 60.000 | 0.00 | 0.00 | 0.00 | 3.82 |
784 | 865 | 0.827925 | AGACGAGAAGGGACAGCACA | 60.828 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
785 | 866 | 0.109039 | GAGACGAGAAGGGACAGCAC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
786 | 867 | 1.251527 | GGAGACGAGAAGGGACAGCA | 61.252 | 60.000 | 0.00 | 0.00 | 0.00 | 4.41 |
800 | 881 | 1.731750 | GCGGACAGACTAAACGGAGAC | 60.732 | 57.143 | 0.00 | 0.00 | 0.00 | 3.36 |
801 | 882 | 0.524862 | GCGGACAGACTAAACGGAGA | 59.475 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
802 | 883 | 0.797249 | CGCGGACAGACTAAACGGAG | 60.797 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
803 | 884 | 1.210931 | CGCGGACAGACTAAACGGA | 59.789 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
804 | 885 | 2.442188 | GCGCGGACAGACTAAACGG | 61.442 | 63.158 | 8.83 | 0.00 | 0.00 | 4.44 |
805 | 886 | 2.774951 | CGCGCGGACAGACTAAACG | 61.775 | 63.158 | 24.84 | 0.00 | 0.00 | 3.60 |
806 | 887 | 3.067846 | GCGCGCGGACAGACTAAAC | 62.068 | 63.158 | 33.06 | 5.84 | 0.00 | 2.01 |
807 | 888 | 2.807895 | GCGCGCGGACAGACTAAA | 60.808 | 61.111 | 33.06 | 0.00 | 0.00 | 1.85 |
831 | 912 | 1.004918 | ACTTTTCCTCCGGCACTCG | 60.005 | 57.895 | 0.00 | 0.00 | 38.88 | 4.18 |
832 | 913 | 0.955919 | CCACTTTTCCTCCGGCACTC | 60.956 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
833 | 914 | 1.073199 | CCACTTTTCCTCCGGCACT | 59.927 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
834 | 915 | 1.228154 | ACCACTTTTCCTCCGGCAC | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
835 | 916 | 1.228124 | CACCACTTTTCCTCCGGCA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
836 | 917 | 1.971695 | CCACCACTTTTCCTCCGGC | 60.972 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
837 | 918 | 1.303317 | CCCACCACTTTTCCTCCGG | 60.303 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
838 | 919 | 0.109723 | TTCCCACCACTTTTCCTCCG | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
839 | 920 | 1.617322 | GTTCCCACCACTTTTCCTCC | 58.383 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
841 | 922 | 0.187606 | GGGTTCCCACCACTTTTCCT | 59.812 | 55.000 | 2.59 | 0.00 | 46.43 | 3.36 |
843 | 924 | 0.466739 | ACGGGTTCCCACCACTTTTC | 60.467 | 55.000 | 8.70 | 0.00 | 46.43 | 2.29 |
844 | 925 | 0.845337 | TACGGGTTCCCACCACTTTT | 59.155 | 50.000 | 8.70 | 0.00 | 46.43 | 2.27 |
845 | 926 | 1.069775 | ATACGGGTTCCCACCACTTT | 58.930 | 50.000 | 8.70 | 0.00 | 46.43 | 2.66 |
846 | 927 | 0.326927 | CATACGGGTTCCCACCACTT | 59.673 | 55.000 | 8.70 | 0.00 | 46.43 | 3.16 |
847 | 928 | 1.988015 | CATACGGGTTCCCACCACT | 59.012 | 57.895 | 8.70 | 0.00 | 46.43 | 4.00 |
849 | 930 | 1.921346 | AGCATACGGGTTCCCACCA | 60.921 | 57.895 | 8.70 | 0.00 | 46.43 | 4.17 |
850 | 931 | 1.451387 | CAGCATACGGGTTCCCACC | 60.451 | 63.158 | 8.70 | 0.00 | 43.37 | 4.61 |
851 | 932 | 1.451387 | CCAGCATACGGGTTCCCAC | 60.451 | 63.158 | 8.70 | 0.00 | 0.00 | 4.61 |
852 | 933 | 1.906105 | GACCAGCATACGGGTTCCCA | 61.906 | 60.000 | 8.70 | 0.00 | 45.19 | 4.37 |
853 | 934 | 1.153229 | GACCAGCATACGGGTTCCC | 60.153 | 63.158 | 0.00 | 0.00 | 45.19 | 3.97 |
854 | 935 | 1.153229 | GGACCAGCATACGGGTTCC | 60.153 | 63.158 | 0.00 | 0.00 | 45.19 | 3.62 |
855 | 936 | 1.520787 | CGGACCAGCATACGGGTTC | 60.521 | 63.158 | 0.00 | 0.00 | 45.19 | 3.62 |
856 | 937 | 2.582436 | CGGACCAGCATACGGGTT | 59.418 | 61.111 | 0.00 | 0.00 | 45.19 | 4.11 |
858 | 939 | 4.910585 | GCCGGACCAGCATACGGG | 62.911 | 72.222 | 5.05 | 1.43 | 46.04 | 5.28 |
861 | 942 | 3.845259 | TCGGCCGGACCAGCATAC | 61.845 | 66.667 | 27.83 | 0.00 | 39.03 | 2.39 |
905 | 1003 | 2.812983 | GCTCCCTCCCTTTTGTAACGTT | 60.813 | 50.000 | 5.88 | 5.88 | 0.00 | 3.99 |
920 | 1018 | 4.699522 | GGTCGTTTGCCGCTCCCT | 62.700 | 66.667 | 0.00 | 0.00 | 36.19 | 4.20 |
927 | 1025 | 4.379143 | GCGTTCCGGTCGTTTGCC | 62.379 | 66.667 | 18.83 | 3.24 | 0.00 | 4.52 |
928 | 1026 | 4.712873 | CGCGTTCCGGTCGTTTGC | 62.713 | 66.667 | 18.83 | 8.24 | 0.00 | 3.68 |
929 | 1027 | 4.712873 | GCGCGTTCCGGTCGTTTG | 62.713 | 66.667 | 8.43 | 12.22 | 37.44 | 2.93 |
939 | 1052 | 4.583254 | TGTTGTGTGCGCGCGTTC | 62.583 | 61.111 | 32.35 | 23.40 | 0.00 | 3.95 |
958 | 1071 | 0.664767 | GGCGATCGATGCTAGTGACC | 60.665 | 60.000 | 21.57 | 1.94 | 0.00 | 4.02 |
961 | 1074 | 0.665670 | CAGGGCGATCGATGCTAGTG | 60.666 | 60.000 | 21.57 | 1.54 | 0.00 | 2.74 |
964 | 1077 | 2.340078 | GCAGGGCGATCGATGCTA | 59.660 | 61.111 | 21.57 | 0.00 | 35.78 | 3.49 |
966 | 1079 | 4.615815 | AGGCAGGGCGATCGATGC | 62.616 | 66.667 | 21.57 | 23.01 | 37.95 | 3.91 |
975 | 1088 | 2.158971 | TGAAAAAGTGAAAAGGCAGGGC | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
976 | 1089 | 3.721035 | CTGAAAAAGTGAAAAGGCAGGG | 58.279 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
977 | 1090 | 3.126073 | GCTGAAAAAGTGAAAAGGCAGG | 58.874 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
978 | 1091 | 3.126073 | GGCTGAAAAAGTGAAAAGGCAG | 58.874 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
979 | 1092 | 2.499289 | TGGCTGAAAAAGTGAAAAGGCA | 59.501 | 40.909 | 0.00 | 0.00 | 37.81 | 4.75 |
980 | 1093 | 3.177997 | TGGCTGAAAAAGTGAAAAGGC | 57.822 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
982 | 1095 | 4.374399 | AGCATGGCTGAAAAAGTGAAAAG | 58.626 | 39.130 | 0.00 | 0.00 | 37.57 | 2.27 |
985 | 1098 | 3.225104 | AGAGCATGGCTGAAAAAGTGAA | 58.775 | 40.909 | 0.00 | 0.00 | 39.88 | 3.18 |
987 | 1100 | 2.094854 | GGAGAGCATGGCTGAAAAAGTG | 60.095 | 50.000 | 0.00 | 0.00 | 39.88 | 3.16 |
988 | 1101 | 2.165998 | GGAGAGCATGGCTGAAAAAGT | 58.834 | 47.619 | 0.00 | 0.00 | 39.88 | 2.66 |
994 | 1107 | 2.580815 | CGTGGAGAGCATGGCTGA | 59.419 | 61.111 | 0.00 | 0.00 | 39.88 | 4.26 |
1067 | 1180 | 3.853597 | AACACGACGAACCGGCTCC | 62.854 | 63.158 | 0.00 | 0.00 | 29.68 | 4.70 |
1068 | 1181 | 2.355481 | AACACGACGAACCGGCTC | 60.355 | 61.111 | 0.00 | 0.00 | 29.68 | 4.70 |
1069 | 1182 | 2.355481 | GAACACGACGAACCGGCT | 60.355 | 61.111 | 0.00 | 0.00 | 29.68 | 5.52 |
1070 | 1183 | 3.408851 | GGAACACGACGAACCGGC | 61.409 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1071 | 1184 | 2.019951 | CAGGAACACGACGAACCGG | 61.020 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
1072 | 1185 | 2.019951 | CCAGGAACACGACGAACCG | 61.020 | 63.158 | 0.00 | 0.00 | 0.00 | 4.44 |
1075 | 1188 | 2.029964 | GGCCAGGAACACGACGAA | 59.970 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
1076 | 1189 | 4.351938 | CGGCCAGGAACACGACGA | 62.352 | 66.667 | 2.24 | 0.00 | 0.00 | 4.20 |
1118 | 1231 | 4.374702 | CACGCACGCTGCTGGAAC | 62.375 | 66.667 | 0.00 | 0.00 | 42.25 | 3.62 |
1527 | 1646 | 1.004918 | ACCTCCTGCTGTTGCGTAC | 60.005 | 57.895 | 0.00 | 0.00 | 43.34 | 3.67 |
1528 | 1647 | 1.292223 | GACCTCCTGCTGTTGCGTA | 59.708 | 57.895 | 0.00 | 0.00 | 43.34 | 4.42 |
1529 | 1648 | 2.031163 | GACCTCCTGCTGTTGCGT | 59.969 | 61.111 | 0.00 | 0.00 | 43.34 | 5.24 |
1530 | 1649 | 0.957395 | AATGACCTCCTGCTGTTGCG | 60.957 | 55.000 | 0.00 | 0.00 | 43.34 | 4.85 |
1533 | 1652 | 2.040813 | ACATCAATGACCTCCTGCTGTT | 59.959 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
1579 | 1701 | 3.740397 | CCGGCACCACACTGCATG | 61.740 | 66.667 | 0.00 | 0.00 | 39.08 | 4.06 |
1580 | 1702 | 3.907260 | CTCCGGCACCACACTGCAT | 62.907 | 63.158 | 0.00 | 0.00 | 39.08 | 3.96 |
1581 | 1703 | 4.624364 | CTCCGGCACCACACTGCA | 62.624 | 66.667 | 0.00 | 0.00 | 39.08 | 4.41 |
1866 | 1988 | 4.176752 | GGGACGGTCATGAGCCCC | 62.177 | 72.222 | 19.47 | 19.47 | 32.50 | 5.80 |
2007 | 2129 | 9.098355 | GTGAATTCAGAAGCAACATACTATACA | 57.902 | 33.333 | 8.80 | 0.00 | 0.00 | 2.29 |
2010 | 2132 | 6.238211 | GCGTGAATTCAGAAGCAACATACTAT | 60.238 | 38.462 | 19.50 | 0.00 | 0.00 | 2.12 |
2011 | 2133 | 5.063438 | GCGTGAATTCAGAAGCAACATACTA | 59.937 | 40.000 | 19.50 | 0.00 | 0.00 | 1.82 |
2016 | 2147 | 1.069973 | CGCGTGAATTCAGAAGCAACA | 60.070 | 47.619 | 22.29 | 0.00 | 0.00 | 3.33 |
2034 | 2166 | 2.510238 | AGTCATCGGCAAGAGCGC | 60.510 | 61.111 | 0.00 | 0.00 | 43.41 | 5.92 |
2035 | 2167 | 2.806856 | GCAGTCATCGGCAAGAGCG | 61.807 | 63.158 | 0.00 | 0.00 | 43.41 | 5.03 |
2046 | 2178 | 2.168106 | GGTGTCAGAGATGAGCAGTCAT | 59.832 | 50.000 | 0.00 | 0.00 | 46.75 | 3.06 |
2049 | 2181 | 0.529833 | CGGTGTCAGAGATGAGCAGT | 59.470 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2095 | 2227 | 1.690219 | CCTGCGGCAGGTAGATCCTT | 61.690 | 60.000 | 35.42 | 0.00 | 45.67 | 3.36 |
2164 | 2296 | 2.265904 | CCTCCACTCGTCGGTGACA | 61.266 | 63.158 | 13.37 | 2.06 | 39.34 | 3.58 |
2225 | 2357 | 3.042560 | GCCTTGCTCGGCTTGTTT | 58.957 | 55.556 | 9.23 | 0.00 | 46.63 | 2.83 |
2279 | 2411 | 3.150485 | GAACTTTTGTCGCGCGCG | 61.150 | 61.111 | 44.84 | 44.84 | 41.35 | 6.86 |
2310 | 2480 | 7.862512 | TTGACATTTTTGGCTGAGAATTTTT | 57.137 | 28.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2377 | 2547 | 2.870119 | GCCCACACCTGCATGCAAA | 61.870 | 57.895 | 22.88 | 0.00 | 0.00 | 3.68 |
2565 | 2735 | 4.788925 | AGTACACTAGAGGATCAGAGCT | 57.211 | 45.455 | 0.00 | 0.00 | 37.82 | 4.09 |
2585 | 2755 | 1.272807 | TTTGGGAACGGAGGGAGTAG | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2587 | 2757 | 1.961133 | TATTTGGGAACGGAGGGAGT | 58.039 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2588 | 2758 | 4.102681 | ACTTATATTTGGGAACGGAGGGAG | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2590 | 2760 | 4.102681 | AGACTTATATTTGGGAACGGAGGG | 59.897 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2591 | 2761 | 5.291905 | AGACTTATATTTGGGAACGGAGG | 57.708 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2593 | 2763 | 6.954232 | AGAAAGACTTATATTTGGGAACGGA | 58.046 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2594 | 2764 | 8.202137 | TCTAGAAAGACTTATATTTGGGAACGG | 58.798 | 37.037 | 0.00 | 0.00 | 0.00 | 4.44 |
2595 | 2765 | 9.250624 | CTCTAGAAAGACTTATATTTGGGAACG | 57.749 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
2609 | 2779 | 9.303116 | TCACTTGTTAGAATCTCTAGAAAGACT | 57.697 | 33.333 | 0.00 | 0.00 | 32.30 | 3.24 |
2610 | 2780 | 9.349145 | GTCACTTGTTAGAATCTCTAGAAAGAC | 57.651 | 37.037 | 0.00 | 0.00 | 32.30 | 3.01 |
2611 | 2781 | 9.303116 | AGTCACTTGTTAGAATCTCTAGAAAGA | 57.697 | 33.333 | 0.00 | 0.00 | 32.30 | 2.52 |
2614 | 2784 | 9.516546 | TGTAGTCACTTGTTAGAATCTCTAGAA | 57.483 | 33.333 | 0.00 | 0.00 | 29.56 | 2.10 |
2615 | 2785 | 9.688091 | ATGTAGTCACTTGTTAGAATCTCTAGA | 57.312 | 33.333 | 0.00 | 0.00 | 29.56 | 2.43 |
2618 | 2788 | 9.244292 | TGTATGTAGTCACTTGTTAGAATCTCT | 57.756 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
2642 | 2812 | 9.950496 | AGTGTAGATTCACTCATTTTTCTATGT | 57.050 | 29.630 | 0.00 | 0.00 | 44.07 | 2.29 |
2684 | 2854 | 8.783093 | CAAATGGACAATAACATACGGATGTAT | 58.217 | 33.333 | 15.10 | 7.16 | 45.93 | 2.29 |
2685 | 2855 | 7.988028 | TCAAATGGACAATAACATACGGATGTA | 59.012 | 33.333 | 15.10 | 3.00 | 45.93 | 2.29 |
2687 | 2857 | 7.258022 | TCAAATGGACAATAACATACGGATG | 57.742 | 36.000 | 5.94 | 5.94 | 39.16 | 3.51 |
2688 | 2858 | 7.873719 | TTCAAATGGACAATAACATACGGAT | 57.126 | 32.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2689 | 2859 | 7.689446 | TTTCAAATGGACAATAACATACGGA | 57.311 | 32.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2690 | 2860 | 7.973388 | ACATTTCAAATGGACAATAACATACGG | 59.027 | 33.333 | 14.70 | 0.00 | 0.00 | 4.02 |
2691 | 2861 | 8.909708 | ACATTTCAAATGGACAATAACATACG | 57.090 | 30.769 | 14.70 | 0.00 | 0.00 | 3.06 |
2700 | 2870 | 9.528018 | GTCTTTTTAGACATTTCAAATGGACAA | 57.472 | 29.630 | 14.70 | 2.31 | 38.59 | 3.18 |
2701 | 2871 | 8.912988 | AGTCTTTTTAGACATTTCAAATGGACA | 58.087 | 29.630 | 14.70 | 0.00 | 41.02 | 4.02 |
2702 | 2872 | 9.750125 | AAGTCTTTTTAGACATTTCAAATGGAC | 57.250 | 29.630 | 14.70 | 8.92 | 41.02 | 4.02 |
2720 | 2890 | 9.868160 | CCCTCCATTCCTAAATATAAGTCTTTT | 57.132 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2721 | 2891 | 9.237706 | TCCCTCCATTCCTAAATATAAGTCTTT | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2722 | 2892 | 8.814448 | TCCCTCCATTCCTAAATATAAGTCTT | 57.186 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
2723 | 2893 | 8.019652 | ACTCCCTCCATTCCTAAATATAAGTCT | 58.980 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
2724 | 2894 | 8.208575 | ACTCCCTCCATTCCTAAATATAAGTC | 57.791 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2725 | 2895 | 9.327731 | CTACTCCCTCCATTCCTAAATATAAGT | 57.672 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2726 | 2896 | 9.327731 | ACTACTCCCTCCATTCCTAAATATAAG | 57.672 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2728 | 2898 | 9.765295 | GTACTACTCCCTCCATTCCTAAATATA | 57.235 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
2729 | 2899 | 8.465971 | AGTACTACTCCCTCCATTCCTAAATAT | 58.534 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
2730 | 2900 | 7.728981 | CAGTACTACTCCCTCCATTCCTAAATA | 59.271 | 40.741 | 0.00 | 0.00 | 0.00 | 1.40 |
2731 | 2901 | 6.555360 | CAGTACTACTCCCTCCATTCCTAAAT | 59.445 | 42.308 | 0.00 | 0.00 | 0.00 | 1.40 |
2732 | 2902 | 5.897824 | CAGTACTACTCCCTCCATTCCTAAA | 59.102 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2733 | 2903 | 5.043582 | ACAGTACTACTCCCTCCATTCCTAA | 60.044 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2734 | 2904 | 4.481280 | ACAGTACTACTCCCTCCATTCCTA | 59.519 | 45.833 | 0.00 | 0.00 | 0.00 | 2.94 |
2735 | 2905 | 3.272551 | ACAGTACTACTCCCTCCATTCCT | 59.727 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
2736 | 2906 | 3.644335 | ACAGTACTACTCCCTCCATTCC | 58.356 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2737 | 2907 | 9.398538 | CTATATACAGTACTACTCCCTCCATTC | 57.601 | 40.741 | 0.00 | 0.00 | 0.00 | 2.67 |
2738 | 2908 | 7.835181 | GCTATATACAGTACTACTCCCTCCATT | 59.165 | 40.741 | 0.00 | 0.00 | 0.00 | 3.16 |
2739 | 2909 | 7.036790 | TGCTATATACAGTACTACTCCCTCCAT | 60.037 | 40.741 | 0.00 | 0.00 | 0.00 | 3.41 |
2740 | 2910 | 6.273965 | TGCTATATACAGTACTACTCCCTCCA | 59.726 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
2741 | 2911 | 6.719301 | TGCTATATACAGTACTACTCCCTCC | 58.281 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2742 | 2912 | 7.334921 | CACTGCTATATACAGTACTACTCCCTC | 59.665 | 44.444 | 13.93 | 0.00 | 46.44 | 4.30 |
2743 | 2913 | 7.017353 | TCACTGCTATATACAGTACTACTCCCT | 59.983 | 40.741 | 13.93 | 0.00 | 46.44 | 4.20 |
2744 | 2914 | 7.166851 | TCACTGCTATATACAGTACTACTCCC | 58.833 | 42.308 | 13.93 | 0.00 | 46.44 | 4.30 |
2745 | 2915 | 8.670135 | CATCACTGCTATATACAGTACTACTCC | 58.330 | 40.741 | 13.93 | 0.00 | 46.44 | 3.85 |
2746 | 2916 | 9.221933 | ACATCACTGCTATATACAGTACTACTC | 57.778 | 37.037 | 13.93 | 0.00 | 46.44 | 2.59 |
2750 | 2920 | 8.919777 | TGTACATCACTGCTATATACAGTACT | 57.080 | 34.615 | 13.93 | 0.00 | 46.44 | 2.73 |
2751 | 2921 | 8.784994 | ACTGTACATCACTGCTATATACAGTAC | 58.215 | 37.037 | 11.38 | 10.47 | 46.44 | 2.73 |
2752 | 2922 | 8.919777 | ACTGTACATCACTGCTATATACAGTA | 57.080 | 34.615 | 11.38 | 7.07 | 46.44 | 2.74 |
2754 | 2924 | 8.784043 | TGTACTGTACATCACTGCTATATACAG | 58.216 | 37.037 | 16.26 | 6.90 | 42.31 | 2.74 |
2755 | 2925 | 8.685838 | TGTACTGTACATCACTGCTATATACA | 57.314 | 34.615 | 16.26 | 0.00 | 32.89 | 2.29 |
2912 | 3082 | 0.469331 | TAGATACCCCACCCAGCTCG | 60.469 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2940 | 3111 | 2.551459 | GTGATTGCATGATGTAGGCCTC | 59.449 | 50.000 | 9.68 | 1.02 | 34.56 | 4.70 |
2978 | 3149 | 5.163513 | CAATCACTTGCCATTTTCAGTACC | 58.836 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
3000 | 3171 | 9.199645 | ACATTTCATATACAATCAAATGGACCA | 57.800 | 29.630 | 0.00 | 0.00 | 38.31 | 4.02 |
3083 | 3267 | 5.109210 | TCTATAAACTGGCATGTTGACTCG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
3084 | 3268 | 6.985188 | TTCTATAAACTGGCATGTTGACTC | 57.015 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
3186 | 3370 | 3.262420 | CTTGATGGTTCGGGAAGTACTG | 58.738 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3187 | 3371 | 2.904434 | ACTTGATGGTTCGGGAAGTACT | 59.096 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
3249 | 3442 | 5.515008 | GGGTATCTTTGTGTTTCCTCCTCTT | 60.515 | 44.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3316 | 3509 | 1.160137 | ATGGAGCTCGTTCTTTGTGC | 58.840 | 50.000 | 7.83 | 0.00 | 0.00 | 4.57 |
3354 | 3547 | 2.839486 | AAGATTCAGCGGTCACTTCA | 57.161 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3370 | 3563 | 9.654663 | GTAATTTCAGAAGCTTCTAGGTTAAGA | 57.345 | 33.333 | 28.02 | 16.27 | 35.86 | 2.10 |
3372 | 3565 | 9.654663 | GAGTAATTTCAGAAGCTTCTAGGTTAA | 57.345 | 33.333 | 28.02 | 16.73 | 35.86 | 2.01 |
3388 | 3602 | 5.514136 | CCCCTACACTGTTGGAGTAATTTCA | 60.514 | 44.000 | 10.90 | 0.00 | 30.48 | 2.69 |
3394 | 3608 | 2.532843 | GACCCCTACACTGTTGGAGTA | 58.467 | 52.381 | 10.90 | 0.00 | 30.48 | 2.59 |
3406 | 3620 | 1.550976 | CTCAGTTGTGAGGACCCCTAC | 59.449 | 57.143 | 0.00 | 0.00 | 45.85 | 3.18 |
3422 | 3636 | 2.604914 | CGAACCAAATCGTGATCCTCAG | 59.395 | 50.000 | 0.00 | 0.00 | 38.01 | 3.35 |
3463 | 3678 | 2.266279 | TGTGGGGAAAGTAAGAGGAGG | 58.734 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
3506 | 3721 | 8.999431 | CAACATTAGTGACCTAAGAAAAGCTTA | 58.001 | 33.333 | 0.00 | 0.00 | 36.63 | 3.09 |
3515 | 3730 | 7.907214 | AGCTAAACAACATTAGTGACCTAAG | 57.093 | 36.000 | 0.00 | 0.00 | 36.63 | 2.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.