Multiple sequence alignment - TraesCS5A01G356300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G356300 chr5A 100.000 3559 0 0 1 3559 558682014 558685572 0.000000e+00 6573
1 TraesCS5A01G356300 chr5D 91.095 1415 72 29 1151 2560 442496817 442498182 0.000000e+00 1866
2 TraesCS5A01G356300 chr5D 90.041 733 52 13 2757 3484 442498244 442498960 0.000000e+00 929
3 TraesCS5A01G356300 chr5D 95.266 169 7 1 2587 2754 5112350 5112182 2.110000e-67 267
4 TraesCS5A01G356300 chr5D 90.341 176 12 2 2410 2585 442500095 442500265 3.570000e-55 226
5 TraesCS5A01G356300 chr5B 93.299 1149 44 18 1151 2279 538717512 538718647 0.000000e+00 1664
6 TraesCS5A01G356300 chr5B 86.786 840 52 15 2752 3559 538718958 538719770 0.000000e+00 881
7 TraesCS5A01G356300 chr5B 93.392 227 9 2 2359 2585 538718710 538718930 7.360000e-87 331
8 TraesCS5A01G356300 chr5B 77.331 472 53 18 2877 3301 538720029 538720493 2.760000e-56 230
9 TraesCS5A01G356300 chr5B 89.697 165 10 5 195 356 538716542 538716702 1.680000e-48 204
10 TraesCS5A01G356300 chr5B 80.588 170 10 11 369 527 538716742 538716899 3.760000e-20 110
11 TraesCS5A01G356300 chr1A 97.059 170 5 0 2582 2751 6472112 6471943 1.620000e-73 287
12 TraesCS5A01G356300 chr6A 95.833 168 6 1 2584 2751 550716830 550716664 1.630000e-68 270
13 TraesCS5A01G356300 chr4D 94.350 177 8 2 2587 2763 93336684 93336858 1.630000e-68 270
14 TraesCS5A01G356300 chr6B 94.706 170 9 0 2586 2755 520090687 520090518 7.580000e-67 265
15 TraesCS5A01G356300 chr3D 93.333 180 11 1 2586 2765 105119471 105119293 7.580000e-67 265
16 TraesCS5A01G356300 chr2B 93.220 177 12 0 2577 2753 689781895 689781719 9.800000e-66 261
17 TraesCS5A01G356300 chr7D 93.220 177 11 1 2575 2751 530406725 530406900 3.520000e-65 259
18 TraesCS5A01G356300 chr4A 93.642 173 11 0 2579 2751 47740264 47740092 3.520000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G356300 chr5A 558682014 558685572 3558 False 6573 6573 100.000000 1 3559 1 chr5A.!!$F1 3558
1 TraesCS5A01G356300 chr5D 442496817 442500265 3448 False 1007 1866 90.492333 1151 3484 3 chr5D.!!$F1 2333
2 TraesCS5A01G356300 chr5B 538716542 538720493 3951 False 570 1664 86.848833 195 3559 6 chr5B.!!$F1 3364


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 791 0.033781 TTGCTTGATTGTTGGCCTGC 59.966 50.0 3.32 0.0 0.0 4.85 F
804 885 0.109039 GTGCTGTCCCTTCTCGTCTC 60.109 60.0 0.00 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2181 0.529833 CGGTGTCAGAGATGAGCAGT 59.470 55.0 0.0 0.0 0.0 4.40 R
2585 2755 1.272807 TTTGGGAACGGAGGGAGTAG 58.727 55.0 0.0 0.0 0.0 2.57 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.334054 GAGGCAGGGCAGGGAAGT 61.334 66.667 0.00 0.00 0.00 3.01
18 19 3.635268 GAGGCAGGGCAGGGAAGTG 62.635 68.421 0.00 0.00 0.00 3.16
19 20 3.650950 GGCAGGGCAGGGAAGTGA 61.651 66.667 0.00 0.00 0.00 3.41
20 21 2.436109 GCAGGGCAGGGAAGTGAA 59.564 61.111 0.00 0.00 0.00 3.18
21 22 1.676967 GCAGGGCAGGGAAGTGAAG 60.677 63.158 0.00 0.00 0.00 3.02
22 23 1.001641 CAGGGCAGGGAAGTGAAGG 60.002 63.158 0.00 0.00 0.00 3.46
23 24 2.361737 GGGCAGGGAAGTGAAGGC 60.362 66.667 0.00 0.00 0.00 4.35
24 25 2.361737 GGCAGGGAAGTGAAGGCC 60.362 66.667 0.00 0.00 0.00 5.19
25 26 2.747855 GCAGGGAAGTGAAGGCCG 60.748 66.667 0.00 0.00 0.00 6.13
26 27 2.750350 CAGGGAAGTGAAGGCCGT 59.250 61.111 0.00 0.00 0.00 5.68
27 28 1.376037 CAGGGAAGTGAAGGCCGTC 60.376 63.158 12.27 12.27 0.00 4.79
28 29 2.434359 GGGAAGTGAAGGCCGTCG 60.434 66.667 14.24 0.00 0.00 5.12
29 30 3.119096 GGAAGTGAAGGCCGTCGC 61.119 66.667 22.79 22.79 0.00 5.19
41 42 4.129737 CGTCGCCGTCCATCACCT 62.130 66.667 0.00 0.00 0.00 4.00
42 43 2.202756 GTCGCCGTCCATCACCTC 60.203 66.667 0.00 0.00 0.00 3.85
43 44 3.822192 TCGCCGTCCATCACCTCG 61.822 66.667 0.00 0.00 0.00 4.63
45 46 4.148825 GCCGTCCATCACCTCGCT 62.149 66.667 0.00 0.00 0.00 4.93
46 47 2.202797 CCGTCCATCACCTCGCTG 60.203 66.667 0.00 0.00 0.00 5.18
47 48 2.887568 CGTCCATCACCTCGCTGC 60.888 66.667 0.00 0.00 0.00 5.25
48 49 2.581354 GTCCATCACCTCGCTGCT 59.419 61.111 0.00 0.00 0.00 4.24
49 50 1.520342 GTCCATCACCTCGCTGCTC 60.520 63.158 0.00 0.00 0.00 4.26
50 51 2.202987 CCATCACCTCGCTGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
51 52 2.584418 CATCACCTCGCTGCTCCG 60.584 66.667 0.00 0.00 0.00 4.63
52 53 4.521062 ATCACCTCGCTGCTCCGC 62.521 66.667 0.00 0.00 0.00 5.54
61 62 4.379243 CTGCTCCGCCGTCCAAGT 62.379 66.667 0.00 0.00 0.00 3.16
62 63 4.680237 TGCTCCGCCGTCCAAGTG 62.680 66.667 0.00 0.00 0.00 3.16
64 65 4.680237 CTCCGCCGTCCAAGTGCA 62.680 66.667 0.00 0.00 0.00 4.57
65 66 4.680237 TCCGCCGTCCAAGTGCAG 62.680 66.667 0.00 0.00 0.00 4.41
66 67 4.680237 CCGCCGTCCAAGTGCAGA 62.680 66.667 0.00 0.00 0.00 4.26
67 68 3.114616 CGCCGTCCAAGTGCAGAG 61.115 66.667 0.00 0.00 0.00 3.35
68 69 3.426568 GCCGTCCAAGTGCAGAGC 61.427 66.667 0.00 0.00 0.00 4.09
69 70 2.031012 CCGTCCAAGTGCAGAGCA 59.969 61.111 0.00 0.00 35.60 4.26
70 71 2.031516 CCGTCCAAGTGCAGAGCAG 61.032 63.158 0.00 0.00 40.08 4.24
71 72 2.031516 CGTCCAAGTGCAGAGCAGG 61.032 63.158 0.00 0.00 40.08 4.85
72 73 2.033141 TCCAAGTGCAGAGCAGGC 59.967 61.111 0.00 0.00 40.08 4.85
73 74 3.429141 CCAAGTGCAGAGCAGGCG 61.429 66.667 0.00 0.00 40.08 5.52
74 75 3.429141 CAAGTGCAGAGCAGGCGG 61.429 66.667 0.00 0.00 40.08 6.13
91 92 4.162690 GCTCTTCACCCGCCGGAT 62.163 66.667 5.05 0.00 0.00 4.18
92 93 2.202932 CTCTTCACCCGCCGGATG 60.203 66.667 5.05 0.00 0.00 3.51
93 94 4.467084 TCTTCACCCGCCGGATGC 62.467 66.667 5.05 0.00 0.00 3.91
233 234 0.317436 GTCCGAGATCGCTACAGCAG 60.317 60.000 1.61 0.00 42.21 4.24
238 239 2.923655 CGAGATCGCTACAGCAGAAAAA 59.076 45.455 1.61 0.00 42.21 1.94
239 240 3.000277 CGAGATCGCTACAGCAGAAAAAG 60.000 47.826 1.61 0.00 42.21 2.27
243 244 4.732285 TCGCTACAGCAGAAAAAGAAAG 57.268 40.909 1.61 0.00 42.21 2.62
244 245 4.377021 TCGCTACAGCAGAAAAAGAAAGA 58.623 39.130 1.61 0.00 42.21 2.52
248 249 5.917447 GCTACAGCAGAAAAAGAAAGAAAGG 59.083 40.000 0.00 0.00 41.59 3.11
250 251 3.732721 CAGCAGAAAAAGAAAGAAAGGCG 59.267 43.478 0.00 0.00 0.00 5.52
255 256 5.456822 CAGAAAAAGAAAGAAAGGCGACAAG 59.543 40.000 0.00 0.00 0.00 3.16
301 302 3.208594 GCTCAATCATGCATAGTGGACA 58.791 45.455 0.00 0.00 0.00 4.02
303 304 4.193865 CTCAATCATGCATAGTGGACACA 58.806 43.478 0.00 0.00 0.00 3.72
334 335 2.435059 GGTGCTCCTTGTCTCCGC 60.435 66.667 0.00 0.00 0.00 5.54
335 336 2.435059 GTGCTCCTTGTCTCCGCC 60.435 66.667 0.00 0.00 0.00 6.13
354 385 2.027605 CAGCGTCCACGTGTCTGT 59.972 61.111 15.65 0.00 42.22 3.41
365 396 2.358615 TGTCTGTCGGCATGTGGC 60.359 61.111 0.00 0.00 43.74 5.01
410 441 4.552365 CGACGGGGGCAGATGCAT 62.552 66.667 0.00 0.00 44.36 3.96
411 442 2.903855 GACGGGGGCAGATGCATG 60.904 66.667 2.46 0.00 44.36 4.06
434 465 1.339929 TCCATACATGATCCACGTCCG 59.660 52.381 0.00 0.00 0.00 4.79
437 468 2.344521 TACATGATCCACGTCCGCGG 62.345 60.000 22.12 22.12 43.45 6.46
480 522 1.153628 GTGGTCACCCTCGAATCGG 60.154 63.158 1.76 0.00 0.00 4.18
514 556 1.303236 TTCGGTGCTGGTCAATGGG 60.303 57.895 0.00 0.00 0.00 4.00
538 580 2.666207 GGTGTGGCCGGTGTGATA 59.334 61.111 1.90 0.00 0.00 2.15
539 581 1.449601 GGTGTGGCCGGTGTGATAG 60.450 63.158 1.90 0.00 0.00 2.08
540 582 1.295423 GTGTGGCCGGTGTGATAGT 59.705 57.895 1.90 0.00 0.00 2.12
541 583 0.533491 GTGTGGCCGGTGTGATAGTA 59.467 55.000 1.90 0.00 0.00 1.82
542 584 0.821517 TGTGGCCGGTGTGATAGTAG 59.178 55.000 1.90 0.00 0.00 2.57
543 585 0.822164 GTGGCCGGTGTGATAGTAGT 59.178 55.000 1.90 0.00 0.00 2.73
544 586 0.821517 TGGCCGGTGTGATAGTAGTG 59.178 55.000 1.90 0.00 0.00 2.74
545 587 1.108776 GGCCGGTGTGATAGTAGTGA 58.891 55.000 1.90 0.00 0.00 3.41
546 588 1.687123 GGCCGGTGTGATAGTAGTGAT 59.313 52.381 1.90 0.00 0.00 3.06
547 589 2.889045 GGCCGGTGTGATAGTAGTGATA 59.111 50.000 1.90 0.00 0.00 2.15
548 590 3.510360 GGCCGGTGTGATAGTAGTGATAT 59.490 47.826 1.90 0.00 0.00 1.63
549 591 4.380655 GGCCGGTGTGATAGTAGTGATATC 60.381 50.000 1.90 0.00 0.00 1.63
559 601 7.600375 GTGATAGTAGTGATATCATGGTGGTTG 59.400 40.741 9.02 0.00 40.69 3.77
573 615 3.317449 GGTTGCTCCACTAACCGTT 57.683 52.632 0.00 0.00 37.23 4.44
574 616 0.872388 GGTTGCTCCACTAACCGTTG 59.128 55.000 0.00 0.00 37.23 4.10
575 617 1.589803 GTTGCTCCACTAACCGTTGT 58.410 50.000 0.00 0.00 0.00 3.32
580 622 3.181463 TGCTCCACTAACCGTTGTTAACT 60.181 43.478 7.22 0.00 36.54 2.24
581 623 3.185797 GCTCCACTAACCGTTGTTAACTG 59.814 47.826 7.22 0.00 36.54 3.16
582 624 4.624015 CTCCACTAACCGTTGTTAACTGA 58.376 43.478 7.22 0.00 36.54 3.41
583 625 4.370917 TCCACTAACCGTTGTTAACTGAC 58.629 43.478 7.22 5.04 36.54 3.51
594 636 2.799978 TGTTAACTGACACTCACATGCG 59.200 45.455 7.22 0.00 0.00 4.73
597 639 3.319137 AACTGACACTCACATGCGTAT 57.681 42.857 0.00 0.00 0.00 3.06
598 640 2.610433 ACTGACACTCACATGCGTATG 58.390 47.619 12.28 12.28 40.24 2.39
599 641 1.929169 CTGACACTCACATGCGTATGG 59.071 52.381 18.03 7.00 38.66 2.74
600 642 1.275010 TGACACTCACATGCGTATGGT 59.725 47.619 18.03 5.29 38.66 3.55
601 643 2.494073 TGACACTCACATGCGTATGGTA 59.506 45.455 18.03 4.31 38.66 3.25
602 644 3.132111 TGACACTCACATGCGTATGGTAT 59.868 43.478 18.03 0.00 38.66 2.73
603 645 3.457234 ACACTCACATGCGTATGGTATG 58.543 45.455 18.03 11.92 43.56 2.39
604 646 2.221749 CACTCACATGCGTATGGTATGC 59.778 50.000 18.03 0.00 41.89 3.14
605 647 1.456923 CTCACATGCGTATGGTATGCG 59.543 52.381 18.03 0.00 41.89 4.73
606 648 1.202475 TCACATGCGTATGGTATGCGT 60.202 47.619 18.03 0.00 41.89 5.24
608 650 3.678921 ATGCGTATGGTATGCGTGT 57.321 47.368 1.65 0.00 43.55 4.49
609 651 1.497991 ATGCGTATGGTATGCGTGTC 58.502 50.000 1.65 0.00 43.55 3.67
611 653 0.868602 GCGTATGGTATGCGTGTCGT 60.869 55.000 1.65 0.00 40.59 4.34
612 654 0.843872 CGTATGGTATGCGTGTCGTG 59.156 55.000 0.00 0.00 33.59 4.35
614 656 1.586578 GTATGGTATGCGTGTCGTGTG 59.413 52.381 0.00 0.00 0.00 3.82
622 667 2.086426 CGTGTCGTGTGTGGATCCG 61.086 63.158 7.39 0.00 0.00 4.18
626 671 3.118454 CGTGTGTGGATCCGTGGC 61.118 66.667 7.39 0.00 0.00 5.01
627 672 2.746277 GTGTGTGGATCCGTGGCC 60.746 66.667 7.39 0.00 0.00 5.36
636 681 1.002087 GGATCCGTGGCCGATTATTCT 59.998 52.381 0.00 0.00 35.63 2.40
640 685 2.295349 TCCGTGGCCGATTATTCTACTC 59.705 50.000 0.00 0.00 35.63 2.59
641 686 2.296471 CCGTGGCCGATTATTCTACTCT 59.704 50.000 0.00 0.00 35.63 3.24
642 687 3.504906 CCGTGGCCGATTATTCTACTCTA 59.495 47.826 0.00 0.00 35.63 2.43
654 706 8.937207 ATTATTCTACTCTACTGGTCGGTAAT 57.063 34.615 0.00 0.00 0.00 1.89
658 710 6.182627 TCTACTCTACTGGTCGGTAATTTCA 58.817 40.000 0.00 0.00 0.00 2.69
659 711 5.326200 ACTCTACTGGTCGGTAATTTCAG 57.674 43.478 0.00 0.00 0.00 3.02
661 713 5.125739 ACTCTACTGGTCGGTAATTTCAGAG 59.874 44.000 0.00 0.00 0.00 3.35
662 714 2.973945 ACTGGTCGGTAATTTCAGAGC 58.026 47.619 7.31 7.31 0.00 4.09
663 715 2.301870 ACTGGTCGGTAATTTCAGAGCA 59.698 45.455 14.25 14.25 37.59 4.26
664 716 2.932614 CTGGTCGGTAATTTCAGAGCAG 59.067 50.000 22.41 22.41 45.42 4.24
665 717 2.565391 TGGTCGGTAATTTCAGAGCAGA 59.435 45.455 11.77 0.00 35.80 4.26
666 718 2.930682 GGTCGGTAATTTCAGAGCAGAC 59.069 50.000 8.97 2.16 32.25 3.51
667 719 3.585862 GTCGGTAATTTCAGAGCAGACA 58.414 45.455 0.00 0.00 0.00 3.41
668 720 4.184629 GTCGGTAATTTCAGAGCAGACAT 58.815 43.478 0.00 0.00 0.00 3.06
669 721 4.631813 GTCGGTAATTTCAGAGCAGACATT 59.368 41.667 0.00 0.00 0.00 2.71
670 722 4.870426 TCGGTAATTTCAGAGCAGACATTC 59.130 41.667 0.00 0.00 0.00 2.67
680 732 1.487976 AGCAGACATTCCATCCATCGT 59.512 47.619 0.00 0.00 0.00 3.73
681 733 1.600957 GCAGACATTCCATCCATCGTG 59.399 52.381 0.00 0.00 0.00 4.35
682 734 2.910199 CAGACATTCCATCCATCGTGT 58.090 47.619 0.00 0.00 0.00 4.49
683 735 2.868583 CAGACATTCCATCCATCGTGTC 59.131 50.000 0.00 0.00 36.98 3.67
684 736 1.860950 GACATTCCATCCATCGTGTCG 59.139 52.381 0.00 0.00 0.00 4.35
690 742 2.050350 ATCCATCGTGTCGGTCGGT 61.050 57.895 0.00 0.00 0.00 4.69
698 750 1.001269 TGTCGGTCGGTCCATCTCT 60.001 57.895 0.00 0.00 35.57 3.10
706 758 2.202987 GTCCATCTCTGCCTGCCG 60.203 66.667 0.00 0.00 0.00 5.69
707 759 2.364186 TCCATCTCTGCCTGCCGA 60.364 61.111 0.00 0.00 0.00 5.54
708 760 2.202987 CCATCTCTGCCTGCCGAC 60.203 66.667 0.00 0.00 0.00 4.79
709 761 2.584418 CATCTCTGCCTGCCGACG 60.584 66.667 0.00 0.00 0.00 5.12
710 762 2.755876 ATCTCTGCCTGCCGACGA 60.756 61.111 0.00 0.00 0.00 4.20
711 763 2.780094 ATCTCTGCCTGCCGACGAG 61.780 63.158 0.00 0.00 0.00 4.18
714 766 4.749310 CTGCCTGCCGACGAGCTT 62.749 66.667 0.00 0.00 0.00 3.74
735 788 0.671472 GGCTTGCTTGATTGTTGGCC 60.671 55.000 0.00 0.00 0.00 5.36
736 789 0.319405 GCTTGCTTGATTGTTGGCCT 59.681 50.000 3.32 0.00 0.00 5.19
737 790 1.938016 GCTTGCTTGATTGTTGGCCTG 60.938 52.381 3.32 0.00 0.00 4.85
738 791 0.033781 TTGCTTGATTGTTGGCCTGC 59.966 50.000 3.32 0.00 0.00 4.85
743 824 3.951655 GATTGTTGGCCTGCGTGCG 62.952 63.158 3.32 0.00 0.00 5.34
771 852 2.867472 CCGCGTCCAATCCAACAC 59.133 61.111 4.92 0.00 0.00 3.32
772 853 1.963855 CCGCGTCCAATCCAACACA 60.964 57.895 4.92 0.00 0.00 3.72
773 854 1.497278 CGCGTCCAATCCAACACAG 59.503 57.895 0.00 0.00 0.00 3.66
775 856 1.497278 CGTCCAATCCAACACAGCG 59.503 57.895 0.00 0.00 0.00 5.18
776 857 1.875963 GTCCAATCCAACACAGCGG 59.124 57.895 0.00 0.00 0.00 5.52
778 859 2.267351 CCAATCCAACACAGCGGCA 61.267 57.895 1.45 0.00 0.00 5.69
780 861 2.629656 AATCCAACACAGCGGCAGC 61.630 57.895 0.00 0.00 45.58 5.25
797 878 3.414700 CGCGTGTGCTGTCCCTTC 61.415 66.667 0.00 0.00 39.65 3.46
798 879 2.031163 GCGTGTGCTGTCCCTTCT 59.969 61.111 0.00 0.00 38.39 2.85
799 880 2.029844 GCGTGTGCTGTCCCTTCTC 61.030 63.158 0.00 0.00 38.39 2.87
800 881 1.734477 CGTGTGCTGTCCCTTCTCG 60.734 63.158 0.00 0.00 0.00 4.04
801 882 1.367840 GTGTGCTGTCCCTTCTCGT 59.632 57.895 0.00 0.00 0.00 4.18
802 883 0.667792 GTGTGCTGTCCCTTCTCGTC 60.668 60.000 0.00 0.00 0.00 4.20
803 884 0.827925 TGTGCTGTCCCTTCTCGTCT 60.828 55.000 0.00 0.00 0.00 4.18
804 885 0.109039 GTGCTGTCCCTTCTCGTCTC 60.109 60.000 0.00 0.00 0.00 3.36
805 886 1.251527 TGCTGTCCCTTCTCGTCTCC 61.252 60.000 0.00 0.00 0.00 3.71
806 887 1.803943 CTGTCCCTTCTCGTCTCCG 59.196 63.158 0.00 0.00 0.00 4.63
807 888 0.961358 CTGTCCCTTCTCGTCTCCGT 60.961 60.000 0.00 0.00 35.01 4.69
808 889 0.538977 TGTCCCTTCTCGTCTCCGTT 60.539 55.000 0.00 0.00 35.01 4.44
809 890 0.602060 GTCCCTTCTCGTCTCCGTTT 59.398 55.000 0.00 0.00 35.01 3.60
810 891 1.815003 GTCCCTTCTCGTCTCCGTTTA 59.185 52.381 0.00 0.00 35.01 2.01
814 895 2.748532 CCTTCTCGTCTCCGTTTAGTCT 59.251 50.000 0.00 0.00 35.01 3.24
817 898 2.740981 TCTCGTCTCCGTTTAGTCTGTC 59.259 50.000 0.00 0.00 35.01 3.51
855 936 4.397348 CGGAGGAAAAGTGGTGGG 57.603 61.111 0.00 0.00 0.00 4.61
856 937 1.758592 CGGAGGAAAAGTGGTGGGA 59.241 57.895 0.00 0.00 0.00 4.37
857 938 0.109723 CGGAGGAAAAGTGGTGGGAA 59.890 55.000 0.00 0.00 0.00 3.97
858 939 1.617322 GGAGGAAAAGTGGTGGGAAC 58.383 55.000 0.00 0.00 0.00 3.62
873 954 1.520787 GAACCCGTATGCTGGTCCG 60.521 63.158 0.00 0.00 30.64 4.79
917 1015 2.031191 ACACGGCTCAACGTTACAAAAG 59.969 45.455 0.00 0.00 46.25 2.27
920 1018 2.223745 GGCTCAACGTTACAAAAGGGA 58.776 47.619 0.00 0.00 0.00 4.20
921 1019 2.225727 GGCTCAACGTTACAAAAGGGAG 59.774 50.000 0.00 1.85 0.00 4.30
923 1021 2.812011 CTCAACGTTACAAAAGGGAGGG 59.188 50.000 0.00 0.00 0.00 4.30
924 1022 2.438763 TCAACGTTACAAAAGGGAGGGA 59.561 45.455 0.00 0.00 0.00 4.20
925 1023 2.812011 CAACGTTACAAAAGGGAGGGAG 59.188 50.000 0.00 0.00 0.00 4.30
927 1025 1.450025 GTTACAAAAGGGAGGGAGCG 58.550 55.000 0.00 0.00 0.00 5.03
928 1026 0.326927 TTACAAAAGGGAGGGAGCGG 59.673 55.000 0.00 0.00 0.00 5.52
929 1027 2.193087 TACAAAAGGGAGGGAGCGGC 62.193 60.000 0.00 0.00 0.00 6.53
930 1028 3.256960 AAAAGGGAGGGAGCGGCA 61.257 61.111 1.45 0.00 0.00 5.69
931 1029 2.840753 AAAAGGGAGGGAGCGGCAA 61.841 57.895 1.45 0.00 0.00 4.52
961 1074 4.643385 CGCGCACACAACACGGTC 62.643 66.667 8.75 0.00 0.00 4.79
964 1077 2.171079 CGCACACAACACGGTCACT 61.171 57.895 0.00 0.00 0.00 3.41
966 1079 0.859232 GCACACAACACGGTCACTAG 59.141 55.000 0.00 0.00 0.00 2.57
975 1088 0.308068 ACGGTCACTAGCATCGATCG 59.692 55.000 9.36 9.36 39.16 3.69
976 1089 0.999228 CGGTCACTAGCATCGATCGC 60.999 60.000 11.09 10.63 0.00 4.58
977 1090 0.664767 GGTCACTAGCATCGATCGCC 60.665 60.000 11.09 0.96 0.00 5.54
978 1091 0.664767 GTCACTAGCATCGATCGCCC 60.665 60.000 11.09 0.56 0.00 6.13
979 1092 0.823769 TCACTAGCATCGATCGCCCT 60.824 55.000 11.09 8.61 0.00 5.19
980 1093 0.665670 CACTAGCATCGATCGCCCTG 60.666 60.000 11.09 8.89 0.00 4.45
982 1095 3.226429 TAGCATCGATCGCCCTGCC 62.226 63.158 24.06 12.61 35.21 4.85
985 1098 1.524621 CATCGATCGCCCTGCCTTT 60.525 57.895 11.09 0.00 0.00 3.11
987 1100 0.815615 ATCGATCGCCCTGCCTTTTC 60.816 55.000 11.09 0.00 0.00 2.29
988 1101 1.745115 CGATCGCCCTGCCTTTTCA 60.745 57.895 0.26 0.00 0.00 2.69
994 1107 1.202521 CGCCCTGCCTTTTCACTTTTT 60.203 47.619 0.00 0.00 0.00 1.94
1011 1124 0.674581 TTTCAGCCATGCTCTCCACG 60.675 55.000 0.00 0.00 36.40 4.94
1013 1126 4.479993 AGCCATGCTCTCCACGGC 62.480 66.667 0.00 0.00 43.31 5.68
1089 1202 2.019951 CCGGTTCGTCGTGTTCCTG 61.020 63.158 0.00 0.00 0.00 3.86
1098 1211 4.778143 GTGTTCCTGGCCGGCGAT 62.778 66.667 22.54 0.00 0.00 4.58
1099 1212 4.776322 TGTTCCTGGCCGGCGATG 62.776 66.667 22.54 14.51 0.00 3.84
1121 1234 4.475135 GAGGGGAGCTGCCGGTTC 62.475 72.222 19.04 11.85 37.63 3.62
1124 1237 4.785453 GGGAGCTGCCGGTTCCAG 62.785 72.222 9.14 2.80 45.58 3.86
1425 1538 4.393155 TACCTGGCCACGCAGCTG 62.393 66.667 10.11 10.11 0.00 4.24
1437 1550 2.125552 CAGCTGATGACGCCGGAA 60.126 61.111 8.42 0.00 0.00 4.30
1472 1585 1.271379 CTGGGCGATATACGGTAAGCA 59.729 52.381 0.00 0.00 42.83 3.91
1474 1587 1.271656 GGGCGATATACGGTAAGCACT 59.728 52.381 0.00 0.00 42.83 4.40
2007 2129 0.322277 TCGGCGAGGAGTAAGTGTCT 60.322 55.000 4.99 0.00 0.00 3.41
2010 2132 2.089980 GGCGAGGAGTAAGTGTCTGTA 58.910 52.381 0.00 0.00 0.00 2.74
2011 2133 2.688958 GGCGAGGAGTAAGTGTCTGTAT 59.311 50.000 0.00 0.00 0.00 2.29
2016 2147 6.427547 GCGAGGAGTAAGTGTCTGTATAGTAT 59.572 42.308 0.00 0.00 0.00 2.12
2034 2166 5.536554 AGTATGTTGCTTCTGAATTCACG 57.463 39.130 3.38 1.39 0.00 4.35
2035 2167 2.686558 TGTTGCTTCTGAATTCACGC 57.313 45.000 3.38 8.21 0.00 5.34
2046 2178 3.932580 ATTCACGCGCTCTTGCCGA 62.933 57.895 5.73 0.00 36.92 5.54
2049 2181 4.435436 ACGCGCTCTTGCCGATGA 62.435 61.111 5.73 0.00 36.92 2.92
2065 2197 3.797451 GATGACTGCTCATCTCTGACA 57.203 47.619 8.35 0.00 46.66 3.58
2095 2227 2.997315 CACAGTGCGAGGAGGGGA 60.997 66.667 0.00 0.00 0.00 4.81
2127 2259 2.818132 GCAGGACGAGCTAGCCAT 59.182 61.111 12.13 0.00 0.00 4.40
2164 2296 4.814294 GACATCTTCGCCGGCCGT 62.814 66.667 26.12 8.47 38.35 5.68
2230 2362 1.821666 GCCAGGGCCTACTTCAAACAA 60.822 52.381 5.28 0.00 34.56 2.83
2332 2502 7.481275 TCAAAAATTCTCAGCCAAAAATGTC 57.519 32.000 0.00 0.00 0.00 3.06
2335 2505 7.862512 AAAATTCTCAGCCAAAAATGTCAAA 57.137 28.000 0.00 0.00 0.00 2.69
2336 2506 8.454570 AAAATTCTCAGCCAAAAATGTCAAAT 57.545 26.923 0.00 0.00 0.00 2.32
2337 2507 8.454570 AAATTCTCAGCCAAAAATGTCAAATT 57.545 26.923 0.00 0.00 0.00 1.82
2338 2508 7.662604 ATTCTCAGCCAAAAATGTCAAATTC 57.337 32.000 0.00 0.00 0.00 2.17
2565 2735 0.459585 GAGGCGCCGTTGATCAGTTA 60.460 55.000 23.20 0.00 0.00 2.24
2585 2755 6.017440 CAGTTAGCTCTGATCCTCTAGTGTAC 60.017 46.154 0.00 0.00 37.61 2.90
2587 2757 5.897851 AGCTCTGATCCTCTAGTGTACTA 57.102 43.478 0.00 0.00 0.00 1.82
2588 2758 5.617252 AGCTCTGATCCTCTAGTGTACTAC 58.383 45.833 0.00 0.00 0.00 2.73
2590 2760 5.699458 GCTCTGATCCTCTAGTGTACTACTC 59.301 48.000 0.00 0.00 40.89 2.59
2591 2761 6.177310 TCTGATCCTCTAGTGTACTACTCC 57.823 45.833 0.00 0.00 40.89 3.85
2593 2763 4.976442 TGATCCTCTAGTGTACTACTCCCT 59.024 45.833 0.00 0.00 40.89 4.20
2594 2764 5.072058 TGATCCTCTAGTGTACTACTCCCTC 59.928 48.000 0.00 0.00 40.89 4.30
2595 2765 3.715834 TCCTCTAGTGTACTACTCCCTCC 59.284 52.174 0.00 0.00 40.89 4.30
2596 2766 3.494749 CCTCTAGTGTACTACTCCCTCCG 60.495 56.522 0.00 0.00 40.89 4.63
2597 2767 3.110705 TCTAGTGTACTACTCCCTCCGT 58.889 50.000 0.00 0.00 40.89 4.69
2598 2768 2.895242 AGTGTACTACTCCCTCCGTT 57.105 50.000 0.00 0.00 33.17 4.44
2599 2769 2.720915 AGTGTACTACTCCCTCCGTTC 58.279 52.381 0.00 0.00 33.17 3.95
2601 2771 1.341383 TGTACTACTCCCTCCGTTCCC 60.341 57.143 0.00 0.00 0.00 3.97
2603 2773 0.115745 ACTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2605 2775 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
2607 2777 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2609 2779 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
2610 2780 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
2611 2781 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
2613 2783 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
2614 2784 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
2615 2785 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
2616 2786 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
2617 2787 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
2618 2788 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
2619 2789 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
2620 2790 8.202137 CCGTTCCCAAATATAAGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
2634 2804 9.921637 AAGTCTTTCTAGAGATTCTAACAAGTG 57.078 33.333 0.00 0.00 0.00 3.16
2635 2805 9.303116 AGTCTTTCTAGAGATTCTAACAAGTGA 57.697 33.333 0.00 0.00 0.00 3.41
2636 2806 9.349145 GTCTTTCTAGAGATTCTAACAAGTGAC 57.651 37.037 0.00 0.00 0.00 3.67
2637 2807 9.303116 TCTTTCTAGAGATTCTAACAAGTGACT 57.697 33.333 0.00 0.00 0.00 3.41
2640 2810 9.516546 TTCTAGAGATTCTAACAAGTGACTACA 57.483 33.333 0.00 0.00 0.00 2.74
2641 2811 9.688091 TCTAGAGATTCTAACAAGTGACTACAT 57.312 33.333 0.00 0.00 0.00 2.29
2644 2814 9.244292 AGAGATTCTAACAAGTGACTACATACA 57.756 33.333 0.00 0.00 0.00 2.29
2709 2879 8.918202 ATACATCCGTATGTTATTGTCCATTT 57.082 30.769 0.00 0.00 44.07 2.32
2710 2880 7.026631 ACATCCGTATGTTATTGTCCATTTG 57.973 36.000 0.00 0.00 44.07 2.32
2711 2881 6.826231 ACATCCGTATGTTATTGTCCATTTGA 59.174 34.615 0.00 0.00 44.07 2.69
2712 2882 7.338196 ACATCCGTATGTTATTGTCCATTTGAA 59.662 33.333 0.00 0.00 44.07 2.69
2713 2883 7.689446 TCCGTATGTTATTGTCCATTTGAAA 57.311 32.000 0.00 0.00 0.00 2.69
2714 2884 8.287439 TCCGTATGTTATTGTCCATTTGAAAT 57.713 30.769 0.00 0.00 0.00 2.17
2715 2885 8.187480 TCCGTATGTTATTGTCCATTTGAAATG 58.813 33.333 10.84 10.84 0.00 2.32
2716 2886 7.973388 CCGTATGTTATTGTCCATTTGAAATGT 59.027 33.333 15.93 0.74 0.00 2.71
2717 2887 9.009327 CGTATGTTATTGTCCATTTGAAATGTC 57.991 33.333 15.93 9.53 0.00 3.06
2726 2896 9.528018 TTGTCCATTTGAAATGTCTAAAAAGAC 57.472 29.630 15.93 12.86 39.15 3.01
2727 2897 8.912988 TGTCCATTTGAAATGTCTAAAAAGACT 58.087 29.630 15.93 0.00 39.41 3.24
2728 2898 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
2746 2916 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
2747 2917 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
2748 2918 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
2749 2919 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
2750 2920 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
2751 2921 9.327731 ACTTATATTTAGGAATGGAGGGAGTAG 57.672 37.037 0.00 0.00 0.00 2.57
2752 2922 9.327731 CTTATATTTAGGAATGGAGGGAGTAGT 57.672 37.037 0.00 0.00 0.00 2.73
2754 2924 6.997942 ATTTAGGAATGGAGGGAGTAGTAC 57.002 41.667 0.00 0.00 0.00 2.73
2755 2925 5.745988 TTAGGAATGGAGGGAGTAGTACT 57.254 43.478 1.37 1.37 0.00 2.73
2793 2963 8.414003 TGATGTACAGTACAGATTTAAGCTAGG 58.586 37.037 18.30 0.00 42.77 3.02
2805 2975 5.693769 TTTAAGCTAGGCCTTGTGAGTAT 57.306 39.130 12.58 0.00 0.00 2.12
2807 2977 2.472029 AGCTAGGCCTTGTGAGTATGT 58.528 47.619 12.58 0.00 0.00 2.29
2897 3067 8.946085 GGTGAAAACAGAGATGTATTCATTGTA 58.054 33.333 0.00 0.00 34.06 2.41
2912 3082 4.454678 TCATTGTAGATGGTCATCTTGGC 58.545 43.478 17.28 9.74 45.31 4.52
2940 3111 1.625818 GTGGGGTATCTATCTGCAGGG 59.374 57.143 15.13 4.92 0.00 4.45
2978 3149 7.915508 TGCAATCACTAATTATTTAGTCCACG 58.084 34.615 7.00 0.00 44.94 4.94
2999 3170 3.440173 CGGTACTGAAAATGGCAAGTGAT 59.560 43.478 0.00 0.00 0.00 3.06
3000 3171 4.082787 CGGTACTGAAAATGGCAAGTGATT 60.083 41.667 0.00 0.00 0.00 2.57
3001 3172 5.163513 GGTACTGAAAATGGCAAGTGATTG 58.836 41.667 0.00 0.00 0.00 2.67
3002 3173 4.261578 ACTGAAAATGGCAAGTGATTGG 57.738 40.909 0.00 0.00 0.00 3.16
3003 3174 3.642848 ACTGAAAATGGCAAGTGATTGGT 59.357 39.130 0.00 0.00 0.00 3.67
3004 3175 4.240096 CTGAAAATGGCAAGTGATTGGTC 58.760 43.478 0.00 0.00 0.00 4.02
3005 3176 3.006752 TGAAAATGGCAAGTGATTGGTCC 59.993 43.478 0.00 0.00 0.00 4.46
3006 3177 2.307496 AATGGCAAGTGATTGGTCCA 57.693 45.000 0.00 0.00 0.00 4.02
3007 3178 2.537633 ATGGCAAGTGATTGGTCCAT 57.462 45.000 0.00 0.00 0.00 3.41
3008 3179 2.307496 TGGCAAGTGATTGGTCCATT 57.693 45.000 0.00 0.00 0.00 3.16
3009 3180 2.607499 TGGCAAGTGATTGGTCCATTT 58.393 42.857 0.00 0.00 0.00 2.32
3010 3181 2.299582 TGGCAAGTGATTGGTCCATTTG 59.700 45.455 0.00 0.00 35.29 2.32
3011 3182 2.562298 GGCAAGTGATTGGTCCATTTGA 59.438 45.455 0.00 0.00 34.46 2.69
3083 3267 4.400567 CACCAAGAAAGATTTCCATCCCTC 59.599 45.833 1.73 0.00 37.92 4.30
3084 3268 3.629398 CCAAGAAAGATTTCCATCCCTCG 59.371 47.826 1.73 0.00 37.92 4.63
3249 3442 0.178301 TGGTCGTGTGGTTGCAACTA 59.822 50.000 27.64 20.61 0.00 2.24
3293 3486 2.557056 CCTCAACGACACCTTGTCTAGA 59.443 50.000 4.87 0.00 44.85 2.43
3354 3547 5.590818 TCCATTCACTAGAGGTAGGTCTTT 58.409 41.667 0.00 0.00 0.00 2.52
3370 3563 2.808543 GTCTTTGAAGTGACCGCTGAAT 59.191 45.455 0.00 0.00 0.00 2.57
3372 3565 2.839486 TTGAAGTGACCGCTGAATCT 57.161 45.000 0.00 0.00 0.00 2.40
3388 3602 6.345298 GCTGAATCTTAACCTAGAAGCTTCT 58.655 40.000 30.63 30.63 41.24 2.85
3394 3608 9.746457 AATCTTAACCTAGAAGCTTCTGAAATT 57.254 29.630 34.26 23.97 38.19 1.82
3406 3620 5.471456 AGCTTCTGAAATTACTCCAACAGTG 59.529 40.000 0.00 0.00 36.43 3.66
3411 3625 5.556915 TGAAATTACTCCAACAGTGTAGGG 58.443 41.667 0.00 1.37 36.43 3.53
3422 3636 1.002087 CAGTGTAGGGGTCCTCACAAC 59.998 57.143 14.29 0.00 35.60 3.32
3463 3678 3.879295 TCGATGAAATCTTGGATCAAGGC 59.121 43.478 7.67 0.00 42.58 4.35
3484 3699 2.846827 CCTCCTCTTACTTTCCCCACAT 59.153 50.000 0.00 0.00 0.00 3.21
3492 3707 7.086685 TCTTACTTTCCCCACATAGAGTTTT 57.913 36.000 0.00 0.00 0.00 2.43
3501 3716 9.816787 TTCCCCACATAGAGTTTTTAACTTATT 57.183 29.630 0.00 0.00 43.03 1.40
3503 3718 9.020731 CCCCACATAGAGTTTTTAACTTATTGT 57.979 33.333 0.00 0.00 43.03 2.71
3540 3755 8.154856 TCTTAGGTCACTAATGTTGTTTAGCTT 58.845 33.333 0.00 0.00 38.44 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.334054 ACTTCCCTGCCCTGCCTC 61.334 66.667 0.00 0.00 0.00 4.70
1 2 3.655211 CACTTCCCTGCCCTGCCT 61.655 66.667 0.00 0.00 0.00 4.75
2 3 3.210012 TTCACTTCCCTGCCCTGCC 62.210 63.158 0.00 0.00 0.00 4.85
6 7 2.361737 GCCTTCACTTCCCTGCCC 60.362 66.667 0.00 0.00 0.00 5.36
8 9 2.747855 CGGCCTTCACTTCCCTGC 60.748 66.667 0.00 0.00 0.00 4.85
9 10 1.376037 GACGGCCTTCACTTCCCTG 60.376 63.158 3.96 0.00 0.00 4.45
10 11 2.943978 CGACGGCCTTCACTTCCCT 61.944 63.158 10.24 0.00 0.00 4.20
11 12 2.434359 CGACGGCCTTCACTTCCC 60.434 66.667 10.24 0.00 0.00 3.97
12 13 3.119096 GCGACGGCCTTCACTTCC 61.119 66.667 10.24 0.00 0.00 3.46
25 26 2.202756 GAGGTGATGGACGGCGAC 60.203 66.667 16.62 7.58 0.00 5.19
26 27 3.822192 CGAGGTGATGGACGGCGA 61.822 66.667 16.62 0.00 0.00 5.54
28 29 4.148825 AGCGAGGTGATGGACGGC 62.149 66.667 0.00 0.00 0.00 5.68
29 30 2.202797 CAGCGAGGTGATGGACGG 60.203 66.667 0.00 0.00 0.00 4.79
30 31 2.887568 GCAGCGAGGTGATGGACG 60.888 66.667 6.46 0.00 33.55 4.79
31 32 1.520342 GAGCAGCGAGGTGATGGAC 60.520 63.158 6.46 0.00 33.55 4.02
32 33 2.725312 GGAGCAGCGAGGTGATGGA 61.725 63.158 6.46 0.00 33.55 3.41
33 34 2.202987 GGAGCAGCGAGGTGATGG 60.203 66.667 6.46 0.00 33.55 3.51
34 35 2.584418 CGGAGCAGCGAGGTGATG 60.584 66.667 6.46 0.00 36.94 3.07
47 48 4.680237 TGCACTTGGACGGCGGAG 62.680 66.667 13.24 6.07 0.00 4.63
48 49 4.680237 CTGCACTTGGACGGCGGA 62.680 66.667 13.24 0.00 35.98 5.54
49 50 4.680237 TCTGCACTTGGACGGCGG 62.680 66.667 13.24 0.00 35.25 6.13
50 51 3.114616 CTCTGCACTTGGACGGCG 61.115 66.667 4.80 4.80 0.00 6.46
51 52 3.426568 GCTCTGCACTTGGACGGC 61.427 66.667 0.00 0.00 0.00 5.68
52 53 2.031012 TGCTCTGCACTTGGACGG 59.969 61.111 0.00 0.00 31.71 4.79
53 54 2.031516 CCTGCTCTGCACTTGGACG 61.032 63.158 0.00 0.00 33.79 4.79
54 55 2.331132 GCCTGCTCTGCACTTGGAC 61.331 63.158 1.30 0.00 33.79 4.02
55 56 2.033141 GCCTGCTCTGCACTTGGA 59.967 61.111 1.30 0.00 33.79 3.53
56 57 3.429141 CGCCTGCTCTGCACTTGG 61.429 66.667 0.00 0.00 33.79 3.61
57 58 3.429141 CCGCCTGCTCTGCACTTG 61.429 66.667 0.00 0.00 33.79 3.16
74 75 4.162690 ATCCGGCGGGTGAAGAGC 62.163 66.667 27.98 0.00 33.83 4.09
75 76 2.202932 CATCCGGCGGGTGAAGAG 60.203 66.667 34.95 6.14 33.83 2.85
76 77 4.467084 GCATCCGGCGGGTGAAGA 62.467 66.667 41.23 14.98 33.83 2.87
233 234 5.578776 TCTTGTCGCCTTTCTTTCTTTTTC 58.421 37.500 0.00 0.00 0.00 2.29
238 239 2.550180 GCTTCTTGTCGCCTTTCTTTCT 59.450 45.455 0.00 0.00 0.00 2.52
239 240 2.350868 GGCTTCTTGTCGCCTTTCTTTC 60.351 50.000 0.00 0.00 42.98 2.62
243 244 0.238553 GTGGCTTCTTGTCGCCTTTC 59.761 55.000 0.00 0.00 46.42 2.62
244 245 1.507141 CGTGGCTTCTTGTCGCCTTT 61.507 55.000 0.00 0.00 46.42 3.11
248 249 1.347817 CTCTCGTGGCTTCTTGTCGC 61.348 60.000 0.00 0.00 0.00 5.19
250 251 1.347817 CGCTCTCGTGGCTTCTTGTC 61.348 60.000 0.00 0.00 0.00 3.18
255 256 2.507324 GTCCGCTCTCGTGGCTTC 60.507 66.667 0.00 0.00 40.70 3.86
335 336 3.991051 AGACACGTGGACGCTGGG 61.991 66.667 21.57 0.00 44.43 4.45
409 440 3.244665 ACGTGGATCATGTATGGATGCAT 60.245 43.478 4.68 4.68 43.48 3.96
410 441 2.104622 ACGTGGATCATGTATGGATGCA 59.895 45.455 0.00 0.00 40.21 3.96
411 442 2.738846 GACGTGGATCATGTATGGATGC 59.261 50.000 0.00 0.00 33.38 3.91
415 446 1.783284 CGGACGTGGATCATGTATGG 58.217 55.000 0.00 0.00 33.38 2.74
419 450 2.202743 CGCGGACGTGGATCATGT 60.203 61.111 0.00 0.00 36.19 3.21
487 529 1.519455 CAGCACCGAACCGATCTCC 60.519 63.158 0.00 0.00 0.00 3.71
488 530 1.519455 CCAGCACCGAACCGATCTC 60.519 63.158 0.00 0.00 0.00 2.75
489 531 2.227089 GACCAGCACCGAACCGATCT 62.227 60.000 0.00 0.00 0.00 2.75
490 532 1.810030 GACCAGCACCGAACCGATC 60.810 63.158 0.00 0.00 0.00 3.69
491 533 2.107041 TTGACCAGCACCGAACCGAT 62.107 55.000 0.00 0.00 0.00 4.18
492 534 2.107041 ATTGACCAGCACCGAACCGA 62.107 55.000 0.00 0.00 0.00 4.69
493 535 1.671054 ATTGACCAGCACCGAACCG 60.671 57.895 0.00 0.00 0.00 4.44
494 536 1.586154 CCATTGACCAGCACCGAACC 61.586 60.000 0.00 0.00 0.00 3.62
527 569 4.217767 TGATATCACTACTATCACACCGGC 59.782 45.833 0.00 0.00 32.13 6.13
529 571 6.071896 ACCATGATATCACTACTATCACACCG 60.072 42.308 7.78 0.00 38.16 4.94
530 572 7.093354 CACCATGATATCACTACTATCACACC 58.907 42.308 7.78 0.00 38.16 4.16
531 573 7.093354 CCACCATGATATCACTACTATCACAC 58.907 42.308 7.78 0.00 38.16 3.82
532 574 6.782494 ACCACCATGATATCACTACTATCACA 59.218 38.462 7.78 0.00 38.16 3.58
533 575 7.233389 ACCACCATGATATCACTACTATCAC 57.767 40.000 7.78 0.00 38.16 3.06
535 577 6.591834 GCAACCACCATGATATCACTACTATC 59.408 42.308 7.78 0.00 0.00 2.08
536 578 6.270927 AGCAACCACCATGATATCACTACTAT 59.729 38.462 7.78 0.00 0.00 2.12
537 579 5.602561 AGCAACCACCATGATATCACTACTA 59.397 40.000 7.78 0.00 0.00 1.82
538 580 4.410228 AGCAACCACCATGATATCACTACT 59.590 41.667 7.78 0.00 0.00 2.57
539 581 4.708177 AGCAACCACCATGATATCACTAC 58.292 43.478 7.78 0.00 0.00 2.73
540 582 4.202357 GGAGCAACCACCATGATATCACTA 60.202 45.833 7.78 0.00 38.79 2.74
541 583 3.434167 GGAGCAACCACCATGATATCACT 60.434 47.826 7.78 0.00 38.79 3.41
542 584 2.880890 GGAGCAACCACCATGATATCAC 59.119 50.000 7.78 0.00 38.79 3.06
543 585 2.509131 TGGAGCAACCACCATGATATCA 59.491 45.455 8.10 8.10 44.64 2.15
544 586 3.213206 TGGAGCAACCACCATGATATC 57.787 47.619 0.00 0.00 44.64 1.63
559 601 3.185797 CAGTTAACAACGGTTAGTGGAGC 59.814 47.826 8.61 0.00 40.40 4.70
570 612 4.761745 CATGTGAGTGTCAGTTAACAACG 58.238 43.478 8.61 0.00 36.23 4.10
572 614 3.247411 CGCATGTGAGTGTCAGTTAACAA 59.753 43.478 8.61 0.00 0.00 2.83
573 615 2.799978 CGCATGTGAGTGTCAGTTAACA 59.200 45.455 8.61 0.99 0.00 2.41
574 616 2.800544 ACGCATGTGAGTGTCAGTTAAC 59.199 45.455 14.43 0.00 0.00 2.01
575 617 3.106242 ACGCATGTGAGTGTCAGTTAA 57.894 42.857 14.43 0.00 0.00 2.01
580 622 1.275010 ACCATACGCATGTGAGTGTCA 59.725 47.619 14.43 0.00 33.64 3.58
581 623 2.010145 ACCATACGCATGTGAGTGTC 57.990 50.000 14.43 0.00 33.64 3.67
582 624 3.457234 CATACCATACGCATGTGAGTGT 58.543 45.455 14.43 6.95 36.08 3.55
583 625 2.221749 GCATACCATACGCATGTGAGTG 59.778 50.000 14.43 10.56 0.00 3.51
594 636 1.586578 CACACGACACGCATACCATAC 59.413 52.381 0.00 0.00 0.00 2.39
597 639 0.941936 CACACACGACACGCATACCA 60.942 55.000 0.00 0.00 0.00 3.25
598 640 1.623081 CCACACACGACACGCATACC 61.623 60.000 0.00 0.00 0.00 2.73
599 641 0.665068 TCCACACACGACACGCATAC 60.665 55.000 0.00 0.00 0.00 2.39
600 642 0.245266 ATCCACACACGACACGCATA 59.755 50.000 0.00 0.00 0.00 3.14
601 643 1.005037 ATCCACACACGACACGCAT 60.005 52.632 0.00 0.00 0.00 4.73
602 644 1.663388 GATCCACACACGACACGCA 60.663 57.895 0.00 0.00 0.00 5.24
603 645 2.380410 GGATCCACACACGACACGC 61.380 63.158 6.95 0.00 0.00 5.34
604 646 2.086426 CGGATCCACACACGACACG 61.086 63.158 13.41 0.00 0.00 4.49
605 647 1.006571 ACGGATCCACACACGACAC 60.007 57.895 13.41 0.00 0.00 3.67
606 648 1.006688 CACGGATCCACACACGACA 60.007 57.895 13.41 0.00 0.00 4.35
607 649 1.736645 CCACGGATCCACACACGAC 60.737 63.158 13.41 0.00 0.00 4.34
608 650 2.654289 CCACGGATCCACACACGA 59.346 61.111 13.41 0.00 0.00 4.35
609 651 3.118454 GCCACGGATCCACACACG 61.118 66.667 13.41 0.00 0.00 4.49
611 653 4.386951 CGGCCACGGATCCACACA 62.387 66.667 13.41 0.00 36.18 3.72
612 654 2.869503 AATCGGCCACGGATCCACAC 62.870 60.000 13.41 0.00 41.39 3.82
614 656 0.034896 ATAATCGGCCACGGATCCAC 59.965 55.000 13.41 0.00 41.39 4.02
622 667 5.462405 CAGTAGAGTAGAATAATCGGCCAC 58.538 45.833 2.24 0.00 41.24 5.01
626 671 5.106634 CCGACCAGTAGAGTAGAATAATCGG 60.107 48.000 0.00 0.00 41.24 4.18
627 672 5.469421 ACCGACCAGTAGAGTAGAATAATCG 59.531 44.000 0.00 0.00 41.24 3.34
636 681 6.182627 TCTGAAATTACCGACCAGTAGAGTA 58.817 40.000 0.00 0.00 0.00 2.59
640 685 4.113354 GCTCTGAAATTACCGACCAGTAG 58.887 47.826 0.00 0.00 0.00 2.57
641 686 3.512329 TGCTCTGAAATTACCGACCAGTA 59.488 43.478 0.00 0.00 0.00 2.74
642 687 2.301870 TGCTCTGAAATTACCGACCAGT 59.698 45.455 0.00 0.00 0.00 4.00
654 706 3.009363 TGGATGGAATGTCTGCTCTGAAA 59.991 43.478 0.00 0.00 0.00 2.69
658 710 2.224233 CGATGGATGGAATGTCTGCTCT 60.224 50.000 0.00 0.00 0.00 4.09
659 711 2.141517 CGATGGATGGAATGTCTGCTC 58.858 52.381 0.00 0.00 0.00 4.26
661 713 1.600957 CACGATGGATGGAATGTCTGC 59.399 52.381 0.00 0.00 0.00 4.26
662 714 2.868583 GACACGATGGATGGAATGTCTG 59.131 50.000 0.00 0.00 34.86 3.51
663 715 2.481969 CGACACGATGGATGGAATGTCT 60.482 50.000 0.00 0.00 35.41 3.41
664 716 1.860950 CGACACGATGGATGGAATGTC 59.139 52.381 0.00 0.00 34.46 3.06
665 717 1.473257 CCGACACGATGGATGGAATGT 60.473 52.381 0.00 0.00 0.00 2.71
666 718 1.220529 CCGACACGATGGATGGAATG 58.779 55.000 0.00 0.00 0.00 2.67
667 719 0.830648 ACCGACACGATGGATGGAAT 59.169 50.000 0.00 0.00 0.00 3.01
668 720 0.174845 GACCGACACGATGGATGGAA 59.825 55.000 0.00 0.00 0.00 3.53
669 721 1.813859 GACCGACACGATGGATGGA 59.186 57.895 0.00 0.00 0.00 3.41
670 722 1.588932 CGACCGACACGATGGATGG 60.589 63.158 0.00 0.00 0.00 3.51
680 732 1.001269 AGAGATGGACCGACCGACA 60.001 57.895 0.00 0.00 42.61 4.35
681 733 1.433879 CAGAGATGGACCGACCGAC 59.566 63.158 0.00 0.00 42.61 4.79
682 734 2.415608 GCAGAGATGGACCGACCGA 61.416 63.158 0.00 0.00 42.61 4.69
683 735 2.105128 GCAGAGATGGACCGACCG 59.895 66.667 0.00 0.00 42.61 4.79
684 736 2.060980 AGGCAGAGATGGACCGACC 61.061 63.158 0.00 0.00 39.54 4.79
690 742 2.364186 TCGGCAGGCAGAGATGGA 60.364 61.111 0.00 0.00 0.00 3.41
711 763 0.319405 ACAATCAAGCAAGCCCAAGC 59.681 50.000 0.00 0.00 40.32 4.01
712 764 2.409975 CAACAATCAAGCAAGCCCAAG 58.590 47.619 0.00 0.00 0.00 3.61
714 766 0.680618 CCAACAATCAAGCAAGCCCA 59.319 50.000 0.00 0.00 0.00 5.36
715 767 0.671472 GCCAACAATCAAGCAAGCCC 60.671 55.000 0.00 0.00 0.00 5.19
716 768 0.671472 GGCCAACAATCAAGCAAGCC 60.671 55.000 0.00 0.00 0.00 4.35
717 769 0.319405 AGGCCAACAATCAAGCAAGC 59.681 50.000 5.01 0.00 0.00 4.01
718 770 1.938016 GCAGGCCAACAATCAAGCAAG 60.938 52.381 5.01 0.00 0.00 4.01
722 775 0.387622 CACGCAGGCCAACAATCAAG 60.388 55.000 5.01 0.00 0.00 3.02
726 779 4.041917 CGCACGCAGGCCAACAAT 62.042 61.111 5.01 0.00 0.00 2.71
754 835 1.911293 CTGTGTTGGATTGGACGCGG 61.911 60.000 12.47 0.00 0.00 6.46
762 843 2.629656 GCTGCCGCTGTGTTGGATT 61.630 57.895 0.00 0.00 0.00 3.01
763 844 3.058160 GCTGCCGCTGTGTTGGAT 61.058 61.111 0.00 0.00 0.00 3.41
780 861 3.414700 GAAGGGACAGCACACGCG 61.415 66.667 3.53 3.53 45.49 6.01
781 862 2.029844 GAGAAGGGACAGCACACGC 61.030 63.158 0.00 0.00 38.99 5.34
782 863 1.734477 CGAGAAGGGACAGCACACG 60.734 63.158 0.00 0.00 0.00 4.49
783 864 0.667792 GACGAGAAGGGACAGCACAC 60.668 60.000 0.00 0.00 0.00 3.82
784 865 0.827925 AGACGAGAAGGGACAGCACA 60.828 55.000 0.00 0.00 0.00 4.57
785 866 0.109039 GAGACGAGAAGGGACAGCAC 60.109 60.000 0.00 0.00 0.00 4.40
786 867 1.251527 GGAGACGAGAAGGGACAGCA 61.252 60.000 0.00 0.00 0.00 4.41
800 881 1.731750 GCGGACAGACTAAACGGAGAC 60.732 57.143 0.00 0.00 0.00 3.36
801 882 0.524862 GCGGACAGACTAAACGGAGA 59.475 55.000 0.00 0.00 0.00 3.71
802 883 0.797249 CGCGGACAGACTAAACGGAG 60.797 60.000 0.00 0.00 0.00 4.63
803 884 1.210931 CGCGGACAGACTAAACGGA 59.789 57.895 0.00 0.00 0.00 4.69
804 885 2.442188 GCGCGGACAGACTAAACGG 61.442 63.158 8.83 0.00 0.00 4.44
805 886 2.774951 CGCGCGGACAGACTAAACG 61.775 63.158 24.84 0.00 0.00 3.60
806 887 3.067846 GCGCGCGGACAGACTAAAC 62.068 63.158 33.06 5.84 0.00 2.01
807 888 2.807895 GCGCGCGGACAGACTAAA 60.808 61.111 33.06 0.00 0.00 1.85
831 912 1.004918 ACTTTTCCTCCGGCACTCG 60.005 57.895 0.00 0.00 38.88 4.18
832 913 0.955919 CCACTTTTCCTCCGGCACTC 60.956 60.000 0.00 0.00 0.00 3.51
833 914 1.073199 CCACTTTTCCTCCGGCACT 59.927 57.895 0.00 0.00 0.00 4.40
834 915 1.228154 ACCACTTTTCCTCCGGCAC 60.228 57.895 0.00 0.00 0.00 5.01
835 916 1.228124 CACCACTTTTCCTCCGGCA 60.228 57.895 0.00 0.00 0.00 5.69
836 917 1.971695 CCACCACTTTTCCTCCGGC 60.972 63.158 0.00 0.00 0.00 6.13
837 918 1.303317 CCCACCACTTTTCCTCCGG 60.303 63.158 0.00 0.00 0.00 5.14
838 919 0.109723 TTCCCACCACTTTTCCTCCG 59.890 55.000 0.00 0.00 0.00 4.63
839 920 1.617322 GTTCCCACCACTTTTCCTCC 58.383 55.000 0.00 0.00 0.00 4.30
841 922 0.187606 GGGTTCCCACCACTTTTCCT 59.812 55.000 2.59 0.00 46.43 3.36
843 924 0.466739 ACGGGTTCCCACCACTTTTC 60.467 55.000 8.70 0.00 46.43 2.29
844 925 0.845337 TACGGGTTCCCACCACTTTT 59.155 50.000 8.70 0.00 46.43 2.27
845 926 1.069775 ATACGGGTTCCCACCACTTT 58.930 50.000 8.70 0.00 46.43 2.66
846 927 0.326927 CATACGGGTTCCCACCACTT 59.673 55.000 8.70 0.00 46.43 3.16
847 928 1.988015 CATACGGGTTCCCACCACT 59.012 57.895 8.70 0.00 46.43 4.00
849 930 1.921346 AGCATACGGGTTCCCACCA 60.921 57.895 8.70 0.00 46.43 4.17
850 931 1.451387 CAGCATACGGGTTCCCACC 60.451 63.158 8.70 0.00 43.37 4.61
851 932 1.451387 CCAGCATACGGGTTCCCAC 60.451 63.158 8.70 0.00 0.00 4.61
852 933 1.906105 GACCAGCATACGGGTTCCCA 61.906 60.000 8.70 0.00 45.19 4.37
853 934 1.153229 GACCAGCATACGGGTTCCC 60.153 63.158 0.00 0.00 45.19 3.97
854 935 1.153229 GGACCAGCATACGGGTTCC 60.153 63.158 0.00 0.00 45.19 3.62
855 936 1.520787 CGGACCAGCATACGGGTTC 60.521 63.158 0.00 0.00 45.19 3.62
856 937 2.582436 CGGACCAGCATACGGGTT 59.418 61.111 0.00 0.00 45.19 4.11
858 939 4.910585 GCCGGACCAGCATACGGG 62.911 72.222 5.05 1.43 46.04 5.28
861 942 3.845259 TCGGCCGGACCAGCATAC 61.845 66.667 27.83 0.00 39.03 2.39
905 1003 2.812983 GCTCCCTCCCTTTTGTAACGTT 60.813 50.000 5.88 5.88 0.00 3.99
920 1018 4.699522 GGTCGTTTGCCGCTCCCT 62.700 66.667 0.00 0.00 36.19 4.20
927 1025 4.379143 GCGTTCCGGTCGTTTGCC 62.379 66.667 18.83 3.24 0.00 4.52
928 1026 4.712873 CGCGTTCCGGTCGTTTGC 62.713 66.667 18.83 8.24 0.00 3.68
929 1027 4.712873 GCGCGTTCCGGTCGTTTG 62.713 66.667 8.43 12.22 37.44 2.93
939 1052 4.583254 TGTTGTGTGCGCGCGTTC 62.583 61.111 32.35 23.40 0.00 3.95
958 1071 0.664767 GGCGATCGATGCTAGTGACC 60.665 60.000 21.57 1.94 0.00 4.02
961 1074 0.665670 CAGGGCGATCGATGCTAGTG 60.666 60.000 21.57 1.54 0.00 2.74
964 1077 2.340078 GCAGGGCGATCGATGCTA 59.660 61.111 21.57 0.00 35.78 3.49
966 1079 4.615815 AGGCAGGGCGATCGATGC 62.616 66.667 21.57 23.01 37.95 3.91
975 1088 2.158971 TGAAAAAGTGAAAAGGCAGGGC 60.159 45.455 0.00 0.00 0.00 5.19
976 1089 3.721035 CTGAAAAAGTGAAAAGGCAGGG 58.279 45.455 0.00 0.00 0.00 4.45
977 1090 3.126073 GCTGAAAAAGTGAAAAGGCAGG 58.874 45.455 0.00 0.00 0.00 4.85
978 1091 3.126073 GGCTGAAAAAGTGAAAAGGCAG 58.874 45.455 0.00 0.00 0.00 4.85
979 1092 2.499289 TGGCTGAAAAAGTGAAAAGGCA 59.501 40.909 0.00 0.00 37.81 4.75
980 1093 3.177997 TGGCTGAAAAAGTGAAAAGGC 57.822 42.857 0.00 0.00 0.00 4.35
982 1095 4.374399 AGCATGGCTGAAAAAGTGAAAAG 58.626 39.130 0.00 0.00 37.57 2.27
985 1098 3.225104 AGAGCATGGCTGAAAAAGTGAA 58.775 40.909 0.00 0.00 39.88 3.18
987 1100 2.094854 GGAGAGCATGGCTGAAAAAGTG 60.095 50.000 0.00 0.00 39.88 3.16
988 1101 2.165998 GGAGAGCATGGCTGAAAAAGT 58.834 47.619 0.00 0.00 39.88 2.66
994 1107 2.580815 CGTGGAGAGCATGGCTGA 59.419 61.111 0.00 0.00 39.88 4.26
1067 1180 3.853597 AACACGACGAACCGGCTCC 62.854 63.158 0.00 0.00 29.68 4.70
1068 1181 2.355481 AACACGACGAACCGGCTC 60.355 61.111 0.00 0.00 29.68 4.70
1069 1182 2.355481 GAACACGACGAACCGGCT 60.355 61.111 0.00 0.00 29.68 5.52
1070 1183 3.408851 GGAACACGACGAACCGGC 61.409 66.667 0.00 0.00 0.00 6.13
1071 1184 2.019951 CAGGAACACGACGAACCGG 61.020 63.158 0.00 0.00 0.00 5.28
1072 1185 2.019951 CCAGGAACACGACGAACCG 61.020 63.158 0.00 0.00 0.00 4.44
1075 1188 2.029964 GGCCAGGAACACGACGAA 59.970 61.111 0.00 0.00 0.00 3.85
1076 1189 4.351938 CGGCCAGGAACACGACGA 62.352 66.667 2.24 0.00 0.00 4.20
1118 1231 4.374702 CACGCACGCTGCTGGAAC 62.375 66.667 0.00 0.00 42.25 3.62
1527 1646 1.004918 ACCTCCTGCTGTTGCGTAC 60.005 57.895 0.00 0.00 43.34 3.67
1528 1647 1.292223 GACCTCCTGCTGTTGCGTA 59.708 57.895 0.00 0.00 43.34 4.42
1529 1648 2.031163 GACCTCCTGCTGTTGCGT 59.969 61.111 0.00 0.00 43.34 5.24
1530 1649 0.957395 AATGACCTCCTGCTGTTGCG 60.957 55.000 0.00 0.00 43.34 4.85
1533 1652 2.040813 ACATCAATGACCTCCTGCTGTT 59.959 45.455 0.00 0.00 0.00 3.16
1579 1701 3.740397 CCGGCACCACACTGCATG 61.740 66.667 0.00 0.00 39.08 4.06
1580 1702 3.907260 CTCCGGCACCACACTGCAT 62.907 63.158 0.00 0.00 39.08 3.96
1581 1703 4.624364 CTCCGGCACCACACTGCA 62.624 66.667 0.00 0.00 39.08 4.41
1866 1988 4.176752 GGGACGGTCATGAGCCCC 62.177 72.222 19.47 19.47 32.50 5.80
2007 2129 9.098355 GTGAATTCAGAAGCAACATACTATACA 57.902 33.333 8.80 0.00 0.00 2.29
2010 2132 6.238211 GCGTGAATTCAGAAGCAACATACTAT 60.238 38.462 19.50 0.00 0.00 2.12
2011 2133 5.063438 GCGTGAATTCAGAAGCAACATACTA 59.937 40.000 19.50 0.00 0.00 1.82
2016 2147 1.069973 CGCGTGAATTCAGAAGCAACA 60.070 47.619 22.29 0.00 0.00 3.33
2034 2166 2.510238 AGTCATCGGCAAGAGCGC 60.510 61.111 0.00 0.00 43.41 5.92
2035 2167 2.806856 GCAGTCATCGGCAAGAGCG 61.807 63.158 0.00 0.00 43.41 5.03
2046 2178 2.168106 GGTGTCAGAGATGAGCAGTCAT 59.832 50.000 0.00 0.00 46.75 3.06
2049 2181 0.529833 CGGTGTCAGAGATGAGCAGT 59.470 55.000 0.00 0.00 0.00 4.40
2095 2227 1.690219 CCTGCGGCAGGTAGATCCTT 61.690 60.000 35.42 0.00 45.67 3.36
2164 2296 2.265904 CCTCCACTCGTCGGTGACA 61.266 63.158 13.37 2.06 39.34 3.58
2225 2357 3.042560 GCCTTGCTCGGCTTGTTT 58.957 55.556 9.23 0.00 46.63 2.83
2279 2411 3.150485 GAACTTTTGTCGCGCGCG 61.150 61.111 44.84 44.84 41.35 6.86
2310 2480 7.862512 TTGACATTTTTGGCTGAGAATTTTT 57.137 28.000 0.00 0.00 0.00 1.94
2377 2547 2.870119 GCCCACACCTGCATGCAAA 61.870 57.895 22.88 0.00 0.00 3.68
2565 2735 4.788925 AGTACACTAGAGGATCAGAGCT 57.211 45.455 0.00 0.00 37.82 4.09
2585 2755 1.272807 TTTGGGAACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
2587 2757 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2588 2758 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
2590 2760 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
2591 2761 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
2593 2763 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
2594 2764 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
2595 2765 9.250624 CTCTAGAAAGACTTATATTTGGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
2609 2779 9.303116 TCACTTGTTAGAATCTCTAGAAAGACT 57.697 33.333 0.00 0.00 32.30 3.24
2610 2780 9.349145 GTCACTTGTTAGAATCTCTAGAAAGAC 57.651 37.037 0.00 0.00 32.30 3.01
2611 2781 9.303116 AGTCACTTGTTAGAATCTCTAGAAAGA 57.697 33.333 0.00 0.00 32.30 2.52
2614 2784 9.516546 TGTAGTCACTTGTTAGAATCTCTAGAA 57.483 33.333 0.00 0.00 29.56 2.10
2615 2785 9.688091 ATGTAGTCACTTGTTAGAATCTCTAGA 57.312 33.333 0.00 0.00 29.56 2.43
2618 2788 9.244292 TGTATGTAGTCACTTGTTAGAATCTCT 57.756 33.333 0.00 0.00 0.00 3.10
2642 2812 9.950496 AGTGTAGATTCACTCATTTTTCTATGT 57.050 29.630 0.00 0.00 44.07 2.29
2684 2854 8.783093 CAAATGGACAATAACATACGGATGTAT 58.217 33.333 15.10 7.16 45.93 2.29
2685 2855 7.988028 TCAAATGGACAATAACATACGGATGTA 59.012 33.333 15.10 3.00 45.93 2.29
2687 2857 7.258022 TCAAATGGACAATAACATACGGATG 57.742 36.000 5.94 5.94 39.16 3.51
2688 2858 7.873719 TTCAAATGGACAATAACATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
2689 2859 7.689446 TTTCAAATGGACAATAACATACGGA 57.311 32.000 0.00 0.00 0.00 4.69
2690 2860 7.973388 ACATTTCAAATGGACAATAACATACGG 59.027 33.333 14.70 0.00 0.00 4.02
2691 2861 8.909708 ACATTTCAAATGGACAATAACATACG 57.090 30.769 14.70 0.00 0.00 3.06
2700 2870 9.528018 GTCTTTTTAGACATTTCAAATGGACAA 57.472 29.630 14.70 2.31 38.59 3.18
2701 2871 8.912988 AGTCTTTTTAGACATTTCAAATGGACA 58.087 29.630 14.70 0.00 41.02 4.02
2702 2872 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
2720 2890 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
2721 2891 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
2722 2892 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
2723 2893 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
2724 2894 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
2725 2895 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
2726 2896 9.327731 ACTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
2728 2898 9.765295 GTACTACTCCCTCCATTCCTAAATATA 57.235 37.037 0.00 0.00 0.00 0.86
2729 2899 8.465971 AGTACTACTCCCTCCATTCCTAAATAT 58.534 37.037 0.00 0.00 0.00 1.28
2730 2900 7.728981 CAGTACTACTCCCTCCATTCCTAAATA 59.271 40.741 0.00 0.00 0.00 1.40
2731 2901 6.555360 CAGTACTACTCCCTCCATTCCTAAAT 59.445 42.308 0.00 0.00 0.00 1.40
2732 2902 5.897824 CAGTACTACTCCCTCCATTCCTAAA 59.102 44.000 0.00 0.00 0.00 1.85
2733 2903 5.043582 ACAGTACTACTCCCTCCATTCCTAA 60.044 44.000 0.00 0.00 0.00 2.69
2734 2904 4.481280 ACAGTACTACTCCCTCCATTCCTA 59.519 45.833 0.00 0.00 0.00 2.94
2735 2905 3.272551 ACAGTACTACTCCCTCCATTCCT 59.727 47.826 0.00 0.00 0.00 3.36
2736 2906 3.644335 ACAGTACTACTCCCTCCATTCC 58.356 50.000 0.00 0.00 0.00 3.01
2737 2907 9.398538 CTATATACAGTACTACTCCCTCCATTC 57.601 40.741 0.00 0.00 0.00 2.67
2738 2908 7.835181 GCTATATACAGTACTACTCCCTCCATT 59.165 40.741 0.00 0.00 0.00 3.16
2739 2909 7.036790 TGCTATATACAGTACTACTCCCTCCAT 60.037 40.741 0.00 0.00 0.00 3.41
2740 2910 6.273965 TGCTATATACAGTACTACTCCCTCCA 59.726 42.308 0.00 0.00 0.00 3.86
2741 2911 6.719301 TGCTATATACAGTACTACTCCCTCC 58.281 44.000 0.00 0.00 0.00 4.30
2742 2912 7.334921 CACTGCTATATACAGTACTACTCCCTC 59.665 44.444 13.93 0.00 46.44 4.30
2743 2913 7.017353 TCACTGCTATATACAGTACTACTCCCT 59.983 40.741 13.93 0.00 46.44 4.20
2744 2914 7.166851 TCACTGCTATATACAGTACTACTCCC 58.833 42.308 13.93 0.00 46.44 4.30
2745 2915 8.670135 CATCACTGCTATATACAGTACTACTCC 58.330 40.741 13.93 0.00 46.44 3.85
2746 2916 9.221933 ACATCACTGCTATATACAGTACTACTC 57.778 37.037 13.93 0.00 46.44 2.59
2750 2920 8.919777 TGTACATCACTGCTATATACAGTACT 57.080 34.615 13.93 0.00 46.44 2.73
2751 2921 8.784994 ACTGTACATCACTGCTATATACAGTAC 58.215 37.037 11.38 10.47 46.44 2.73
2752 2922 8.919777 ACTGTACATCACTGCTATATACAGTA 57.080 34.615 11.38 7.07 46.44 2.74
2754 2924 8.784043 TGTACTGTACATCACTGCTATATACAG 58.216 37.037 16.26 6.90 42.31 2.74
2755 2925 8.685838 TGTACTGTACATCACTGCTATATACA 57.314 34.615 16.26 0.00 32.89 2.29
2912 3082 0.469331 TAGATACCCCACCCAGCTCG 60.469 60.000 0.00 0.00 0.00 5.03
2940 3111 2.551459 GTGATTGCATGATGTAGGCCTC 59.449 50.000 9.68 1.02 34.56 4.70
2978 3149 5.163513 CAATCACTTGCCATTTTCAGTACC 58.836 41.667 0.00 0.00 0.00 3.34
3000 3171 9.199645 ACATTTCATATACAATCAAATGGACCA 57.800 29.630 0.00 0.00 38.31 4.02
3083 3267 5.109210 TCTATAAACTGGCATGTTGACTCG 58.891 41.667 0.00 0.00 0.00 4.18
3084 3268 6.985188 TTCTATAAACTGGCATGTTGACTC 57.015 37.500 0.00 0.00 0.00 3.36
3186 3370 3.262420 CTTGATGGTTCGGGAAGTACTG 58.738 50.000 0.00 0.00 0.00 2.74
3187 3371 2.904434 ACTTGATGGTTCGGGAAGTACT 59.096 45.455 0.00 0.00 0.00 2.73
3249 3442 5.515008 GGGTATCTTTGTGTTTCCTCCTCTT 60.515 44.000 0.00 0.00 0.00 2.85
3316 3509 1.160137 ATGGAGCTCGTTCTTTGTGC 58.840 50.000 7.83 0.00 0.00 4.57
3354 3547 2.839486 AAGATTCAGCGGTCACTTCA 57.161 45.000 0.00 0.00 0.00 3.02
3370 3563 9.654663 GTAATTTCAGAAGCTTCTAGGTTAAGA 57.345 33.333 28.02 16.27 35.86 2.10
3372 3565 9.654663 GAGTAATTTCAGAAGCTTCTAGGTTAA 57.345 33.333 28.02 16.73 35.86 2.01
3388 3602 5.514136 CCCCTACACTGTTGGAGTAATTTCA 60.514 44.000 10.90 0.00 30.48 2.69
3394 3608 2.532843 GACCCCTACACTGTTGGAGTA 58.467 52.381 10.90 0.00 30.48 2.59
3406 3620 1.550976 CTCAGTTGTGAGGACCCCTAC 59.449 57.143 0.00 0.00 45.85 3.18
3422 3636 2.604914 CGAACCAAATCGTGATCCTCAG 59.395 50.000 0.00 0.00 38.01 3.35
3463 3678 2.266279 TGTGGGGAAAGTAAGAGGAGG 58.734 52.381 0.00 0.00 0.00 4.30
3506 3721 8.999431 CAACATTAGTGACCTAAGAAAAGCTTA 58.001 33.333 0.00 0.00 36.63 3.09
3515 3730 7.907214 AGCTAAACAACATTAGTGACCTAAG 57.093 36.000 0.00 0.00 36.63 2.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.