Multiple sequence alignment - TraesCS5A01G355500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G355500 chr5A 100.000 3026 0 0 1 3026 558165956 558162931 0.000000e+00 5589.0
1 TraesCS5A01G355500 chr5A 79.412 102 13 7 2327 2426 403290739 403290644 7.000000e-07 65.8
2 TraesCS5A01G355500 chr5D 91.345 2253 132 36 729 2958 441392457 441390245 0.000000e+00 3022.0
3 TraesCS5A01G355500 chr5B 88.808 1787 158 16 758 2518 537626983 537625213 0.000000e+00 2154.0
4 TraesCS5A01G355500 chr4A 85.042 361 24 9 1002 1341 727734373 727734724 1.040000e-89 340.0
5 TraesCS5A01G355500 chr4A 91.216 148 13 0 1684 1831 727737612 727737759 5.120000e-48 202.0
6 TraesCS5A01G355500 chr4A 92.793 111 8 0 1826 1936 727738208 727738318 8.680000e-36 161.0
7 TraesCS5A01G355500 chr4A 96.875 64 2 0 1528 1591 727735914 727735977 1.150000e-19 108.0
8 TraesCS5A01G355500 chr4A 96.364 55 1 1 1934 1988 727738695 727738748 4.160000e-14 89.8
9 TraesCS5A01G355500 chr4A 100.000 37 0 0 2329 2365 673073512 673073476 5.410000e-08 69.4
10 TraesCS5A01G355500 chr7A 84.211 361 27 14 1002 1341 10044233 10043882 1.050000e-84 324.0
11 TraesCS5A01G355500 chr7A 90.213 235 20 3 450 682 543983274 543983041 1.360000e-78 303.0
12 TraesCS5A01G355500 chr7A 89.316 234 23 2 451 682 44210819 44210586 2.950000e-75 292.0
13 TraesCS5A01G355500 chr7A 91.216 148 13 0 1684 1831 10041179 10041032 5.120000e-48 202.0
14 TraesCS5A01G355500 chr7A 91.892 111 9 0 1826 1936 10040577 10040467 4.040000e-34 156.0
15 TraesCS5A01G355500 chr7A 78.243 239 28 10 2107 2331 10039703 10039475 6.810000e-27 132.0
16 TraesCS5A01G355500 chr7A 97.015 67 2 0 1528 1594 10042661 10042595 2.470000e-21 113.0
17 TraesCS5A01G355500 chr7A 94.545 55 2 1 1934 1988 10039926 10039873 1.930000e-12 84.2
18 TraesCS5A01G355500 chr3D 90.598 234 20 2 451 682 226986504 226986737 2.930000e-80 309.0
19 TraesCS5A01G355500 chr3D 89.787 235 20 2 451 682 447585143 447584910 6.340000e-77 298.0
20 TraesCS5A01G355500 chr3B 90.213 235 20 1 451 682 507455144 507455378 1.360000e-78 303.0
21 TraesCS5A01G355500 chr3B 89.655 87 6 3 2330 2415 456554449 456554365 1.150000e-19 108.0
22 TraesCS5A01G355500 chr7D 83.106 367 26 12 1002 1341 10835958 10835601 4.900000e-78 302.0
23 TraesCS5A01G355500 chr7D 91.216 148 13 0 1684 1831 10833114 10832967 5.120000e-48 202.0
24 TraesCS5A01G355500 chr7D 89.431 123 11 2 1814 1936 10832515 10832395 1.450000e-33 154.0
25 TraesCS5A01G355500 chr7D 95.522 67 3 0 1528 1594 10834389 10834323 1.150000e-19 108.0
26 TraesCS5A01G355500 chr7D 100.000 37 0 0 2329 2365 56403672 56403636 5.410000e-08 69.4
27 TraesCS5A01G355500 chr4D 89.256 242 22 4 446 683 479154218 479154459 1.760000e-77 300.0
28 TraesCS5A01G355500 chr2B 89.451 237 21 2 449 682 357919557 357919792 2.280000e-76 296.0
29 TraesCS5A01G355500 chr6B 89.362 235 22 1 451 682 639690620 639690854 2.950000e-75 292.0
30 TraesCS5A01G355500 chr1D 89.362 235 22 3 451 682 97740412 97740178 2.950000e-75 292.0
31 TraesCS5A01G355500 chr1D 91.228 57 4 1 2329 2384 316619665 316619721 3.230000e-10 76.8
32 TraesCS5A01G355500 chrUn 91.216 148 13 0 1684 1831 480953700 480953553 5.120000e-48 202.0
33 TraesCS5A01G355500 chrUn 76.882 186 27 15 2609 2785 331154846 331155024 1.160000e-14 91.6
34 TraesCS5A01G355500 chr4B 76.617 201 31 15 2609 2800 648231396 648231203 2.480000e-16 97.1
35 TraesCS5A01G355500 chr4B 76.617 201 31 15 2609 2800 648257617 648257424 2.480000e-16 97.1
36 TraesCS5A01G355500 chr4B 76.119 201 32 15 2609 2800 648207900 648207707 1.160000e-14 91.6
37 TraesCS5A01G355500 chr1B 91.489 47 4 0 2329 2375 428723265 428723311 7.000000e-07 65.8
38 TraesCS5A01G355500 chr3A 97.143 35 0 1 2327 2360 362548251 362548217 1.170000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G355500 chr5A 558162931 558165956 3025 True 5589 5589 100.000 1 3026 1 chr5A.!!$R2 3025
1 TraesCS5A01G355500 chr5D 441390245 441392457 2212 True 3022 3022 91.345 729 2958 1 chr5D.!!$R1 2229
2 TraesCS5A01G355500 chr5B 537625213 537626983 1770 True 2154 2154 88.808 758 2518 1 chr5B.!!$R1 1760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.323629 TAGTTTGCCAGAAGGTCGGG 59.676 55.0 0.0 0.0 37.19 5.14 F
138 139 0.323725 GGCTGGGCAAAGATCCAAGA 60.324 55.0 0.0 0.0 31.97 3.02 F
709 710 0.396811 CGAACACCCCCTTGTCTTCT 59.603 55.0 0.0 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1545 0.250727 CCGGTTTCCAAAGCAGAGGA 60.251 55.0 0.00 0.00 36.24 3.71 R
1725 1766 0.532640 ATGCGTGATATTCAGCGGCA 60.533 50.0 1.45 0.00 0.00 5.69 R
2478 2524 0.383124 GCGACTCTGAACAACGTTGC 60.383 55.0 27.61 13.21 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.766150 ACTCGGTTGACATTTCAATGAAA 57.234 34.783 11.10 11.10 43.72 2.69
23 24 6.331369 ACTCGGTTGACATTTCAATGAAAT 57.669 33.333 14.86 14.86 43.72 2.17
24 25 7.447374 ACTCGGTTGACATTTCAATGAAATA 57.553 32.000 19.42 3.47 43.72 1.40
25 26 7.881142 ACTCGGTTGACATTTCAATGAAATAA 58.119 30.769 19.42 9.15 43.72 1.40
26 27 8.522830 ACTCGGTTGACATTTCAATGAAATAAT 58.477 29.630 19.42 11.67 43.72 1.28
27 28 9.357652 CTCGGTTGACATTTCAATGAAATAATT 57.642 29.630 19.42 8.30 43.72 1.40
37 38 8.973835 TTTCAATGAAATAATTACGTTCACCC 57.026 30.769 4.03 0.00 34.28 4.61
38 39 7.931578 TCAATGAAATAATTACGTTCACCCT 57.068 32.000 13.12 2.60 34.28 4.34
39 40 8.343168 TCAATGAAATAATTACGTTCACCCTT 57.657 30.769 13.12 4.73 34.28 3.95
40 41 8.240682 TCAATGAAATAATTACGTTCACCCTTG 58.759 33.333 13.12 13.27 34.28 3.61
41 42 5.945155 TGAAATAATTACGTTCACCCTTGC 58.055 37.500 0.00 0.00 0.00 4.01
42 43 5.473846 TGAAATAATTACGTTCACCCTTGCA 59.526 36.000 0.00 0.00 0.00 4.08
43 44 6.151985 TGAAATAATTACGTTCACCCTTGCAT 59.848 34.615 0.00 0.00 0.00 3.96
44 45 6.524101 AATAATTACGTTCACCCTTGCATT 57.476 33.333 0.00 0.00 0.00 3.56
45 46 4.864704 AATTACGTTCACCCTTGCATTT 57.135 36.364 0.00 0.00 0.00 2.32
46 47 5.968528 AATTACGTTCACCCTTGCATTTA 57.031 34.783 0.00 0.00 0.00 1.40
47 48 5.968528 ATTACGTTCACCCTTGCATTTAA 57.031 34.783 0.00 0.00 0.00 1.52
48 49 3.636282 ACGTTCACCCTTGCATTTAAC 57.364 42.857 0.00 0.00 0.00 2.01
49 50 3.219281 ACGTTCACCCTTGCATTTAACT 58.781 40.909 0.00 0.00 0.00 2.24
50 51 3.252458 ACGTTCACCCTTGCATTTAACTC 59.748 43.478 0.00 0.00 0.00 3.01
51 52 3.252215 CGTTCACCCTTGCATTTAACTCA 59.748 43.478 0.00 0.00 0.00 3.41
52 53 4.261405 CGTTCACCCTTGCATTTAACTCAA 60.261 41.667 0.00 0.00 0.00 3.02
53 54 5.564651 CGTTCACCCTTGCATTTAACTCAAT 60.565 40.000 0.00 0.00 0.00 2.57
54 55 6.223120 GTTCACCCTTGCATTTAACTCAATT 58.777 36.000 0.00 0.00 0.00 2.32
55 56 7.375053 GTTCACCCTTGCATTTAACTCAATTA 58.625 34.615 0.00 0.00 0.00 1.40
56 57 7.716799 TCACCCTTGCATTTAACTCAATTAT 57.283 32.000 0.00 0.00 0.00 1.28
57 58 8.133024 TCACCCTTGCATTTAACTCAATTATT 57.867 30.769 0.00 0.00 0.00 1.40
58 59 9.249053 TCACCCTTGCATTTAACTCAATTATTA 57.751 29.630 0.00 0.00 0.00 0.98
59 60 9.520204 CACCCTTGCATTTAACTCAATTATTAG 57.480 33.333 0.00 0.00 0.00 1.73
60 61 8.197439 ACCCTTGCATTTAACTCAATTATTAGC 58.803 33.333 0.00 0.00 0.00 3.09
61 62 8.416329 CCCTTGCATTTAACTCAATTATTAGCT 58.584 33.333 0.00 0.00 0.00 3.32
62 63 9.807649 CCTTGCATTTAACTCAATTATTAGCTT 57.192 29.630 0.00 0.00 0.00 3.74
76 77 9.817365 CAATTATTAGCTTATGATGTACTGTGC 57.183 33.333 0.00 0.00 0.00 4.57
77 78 9.559732 AATTATTAGCTTATGATGTACTGTGCA 57.440 29.630 0.00 0.00 0.00 4.57
78 79 9.730705 ATTATTAGCTTATGATGTACTGTGCAT 57.269 29.630 11.24 11.24 0.00 3.96
79 80 9.559732 TTATTAGCTTATGATGTACTGTGCATT 57.440 29.630 12.62 0.92 0.00 3.56
80 81 7.864108 TTAGCTTATGATGTACTGTGCATTT 57.136 32.000 12.62 6.66 0.00 2.32
81 82 6.369059 AGCTTATGATGTACTGTGCATTTC 57.631 37.500 12.62 2.95 0.00 2.17
82 83 5.882000 AGCTTATGATGTACTGTGCATTTCA 59.118 36.000 12.62 8.51 0.00 2.69
83 84 6.375174 AGCTTATGATGTACTGTGCATTTCAA 59.625 34.615 12.62 6.38 0.00 2.69
84 85 7.067859 AGCTTATGATGTACTGTGCATTTCAAT 59.932 33.333 12.62 7.43 0.00 2.57
85 86 7.166970 GCTTATGATGTACTGTGCATTTCAATG 59.833 37.037 12.62 4.74 39.40 2.82
86 87 5.963176 TGATGTACTGTGCATTTCAATGT 57.037 34.783 12.62 0.00 38.65 2.71
87 88 5.701855 TGATGTACTGTGCATTTCAATGTG 58.298 37.500 12.62 0.00 38.65 3.21
88 89 5.241285 TGATGTACTGTGCATTTCAATGTGT 59.759 36.000 12.62 0.00 38.65 3.72
89 90 6.429385 TGATGTACTGTGCATTTCAATGTGTA 59.571 34.615 12.62 0.00 38.65 2.90
90 91 5.996219 TGTACTGTGCATTTCAATGTGTAC 58.004 37.500 0.00 9.48 38.65 2.90
91 92 5.762711 TGTACTGTGCATTTCAATGTGTACT 59.237 36.000 17.45 1.07 38.65 2.73
92 93 5.112220 ACTGTGCATTTCAATGTGTACTG 57.888 39.130 0.00 5.62 38.65 2.74
93 94 3.899734 TGTGCATTTCAATGTGTACTGC 58.100 40.909 0.00 0.00 38.65 4.40
94 95 3.317430 TGTGCATTTCAATGTGTACTGCA 59.683 39.130 0.00 0.00 38.65 4.41
95 96 4.202090 TGTGCATTTCAATGTGTACTGCAA 60.202 37.500 2.65 0.00 39.56 4.08
96 97 4.925054 GTGCATTTCAATGTGTACTGCAAT 59.075 37.500 2.65 0.00 39.56 3.56
97 98 4.924462 TGCATTTCAATGTGTACTGCAATG 59.076 37.500 1.59 0.00 38.65 2.82
98 99 4.925054 GCATTTCAATGTGTACTGCAATGT 59.075 37.500 6.92 0.00 38.65 2.71
99 100 5.406175 GCATTTCAATGTGTACTGCAATGTT 59.594 36.000 6.92 0.00 38.65 2.71
100 101 6.073657 GCATTTCAATGTGTACTGCAATGTTT 60.074 34.615 6.92 0.00 38.65 2.83
101 102 7.518689 GCATTTCAATGTGTACTGCAATGTTTT 60.519 33.333 6.92 0.00 38.65 2.43
102 103 8.976471 CATTTCAATGTGTACTGCAATGTTTTA 58.024 29.630 0.00 0.00 0.00 1.52
103 104 8.572828 TTTCAATGTGTACTGCAATGTTTTAG 57.427 30.769 0.00 0.00 0.00 1.85
104 105 7.270757 TCAATGTGTACTGCAATGTTTTAGT 57.729 32.000 0.00 0.00 0.00 2.24
105 106 7.711846 TCAATGTGTACTGCAATGTTTTAGTT 58.288 30.769 0.00 0.00 0.00 2.24
106 107 8.194104 TCAATGTGTACTGCAATGTTTTAGTTT 58.806 29.630 0.00 0.00 0.00 2.66
107 108 7.928908 ATGTGTACTGCAATGTTTTAGTTTG 57.071 32.000 0.00 0.00 0.00 2.93
108 109 5.746245 TGTGTACTGCAATGTTTTAGTTTGC 59.254 36.000 0.00 0.00 44.59 3.68
109 110 5.174943 GTGTACTGCAATGTTTTAGTTTGCC 59.825 40.000 4.60 0.00 43.91 4.52
110 111 4.399004 ACTGCAATGTTTTAGTTTGCCA 57.601 36.364 4.60 0.00 43.91 4.92
111 112 4.370917 ACTGCAATGTTTTAGTTTGCCAG 58.629 39.130 4.60 5.09 43.91 4.85
112 113 4.099266 ACTGCAATGTTTTAGTTTGCCAGA 59.901 37.500 4.60 0.00 43.91 3.86
113 114 5.016051 TGCAATGTTTTAGTTTGCCAGAA 57.984 34.783 4.60 0.00 43.91 3.02
114 115 5.049167 TGCAATGTTTTAGTTTGCCAGAAG 58.951 37.500 4.60 0.00 43.91 2.85
115 116 4.448732 GCAATGTTTTAGTTTGCCAGAAGG 59.551 41.667 0.00 0.00 39.80 3.46
116 117 5.600696 CAATGTTTTAGTTTGCCAGAAGGT 58.399 37.500 0.00 0.00 37.19 3.50
117 118 4.911514 TGTTTTAGTTTGCCAGAAGGTC 57.088 40.909 0.00 0.00 37.19 3.85
118 119 3.314080 TGTTTTAGTTTGCCAGAAGGTCG 59.686 43.478 0.00 0.00 37.19 4.79
119 120 2.178912 TTAGTTTGCCAGAAGGTCGG 57.821 50.000 0.00 0.00 37.19 4.79
120 121 0.323629 TAGTTTGCCAGAAGGTCGGG 59.676 55.000 0.00 0.00 37.19 5.14
125 126 4.101448 CCAGAAGGTCGGGCTGGG 62.101 72.222 0.00 0.00 44.24 4.45
126 127 4.785453 CAGAAGGTCGGGCTGGGC 62.785 72.222 0.00 0.00 0.00 5.36
128 129 4.344865 GAAGGTCGGGCTGGGCAA 62.345 66.667 0.00 0.00 0.00 4.52
129 130 3.860930 GAAGGTCGGGCTGGGCAAA 62.861 63.158 0.00 0.00 0.00 3.68
130 131 3.868200 AAGGTCGGGCTGGGCAAAG 62.868 63.158 0.00 0.00 0.00 2.77
131 132 4.344865 GGTCGGGCTGGGCAAAGA 62.345 66.667 0.00 0.00 0.00 2.52
132 133 2.044946 GTCGGGCTGGGCAAAGAT 60.045 61.111 0.00 0.00 0.00 2.40
133 134 2.115291 GTCGGGCTGGGCAAAGATC 61.115 63.158 0.00 0.00 0.00 2.75
134 135 2.830370 CGGGCTGGGCAAAGATCC 60.830 66.667 0.00 0.00 0.00 3.36
135 136 2.360191 GGGCTGGGCAAAGATCCA 59.640 61.111 0.00 0.00 0.00 3.41
136 137 1.305213 GGGCTGGGCAAAGATCCAA 60.305 57.895 0.00 0.00 31.97 3.53
137 138 1.325476 GGGCTGGGCAAAGATCCAAG 61.325 60.000 0.00 0.00 31.97 3.61
138 139 0.323725 GGCTGGGCAAAGATCCAAGA 60.324 55.000 0.00 0.00 31.97 3.02
139 140 1.687368 GGCTGGGCAAAGATCCAAGAT 60.687 52.381 0.00 0.00 31.97 2.40
140 141 2.105766 GCTGGGCAAAGATCCAAGATT 58.894 47.619 0.00 0.00 31.97 2.40
141 142 2.498885 GCTGGGCAAAGATCCAAGATTT 59.501 45.455 0.00 0.00 31.97 2.17
142 143 3.677976 GCTGGGCAAAGATCCAAGATTTG 60.678 47.826 0.00 0.00 37.07 2.32
155 156 5.143376 CCAAGATTTGGCTCAAAAGATGT 57.857 39.130 4.76 0.00 45.17 3.06
156 157 5.544650 CCAAGATTTGGCTCAAAAGATGTT 58.455 37.500 4.76 0.00 45.17 2.71
157 158 5.407387 CCAAGATTTGGCTCAAAAGATGTTG 59.593 40.000 4.76 4.46 45.17 3.33
158 159 5.143376 AGATTTGGCTCAAAAGATGTTGG 57.857 39.130 4.76 0.00 36.90 3.77
159 160 4.834496 AGATTTGGCTCAAAAGATGTTGGA 59.166 37.500 4.76 0.00 36.90 3.53
160 161 4.589216 TTTGGCTCAAAAGATGTTGGAG 57.411 40.909 0.00 1.43 29.89 3.86
161 162 3.228188 TGGCTCAAAAGATGTTGGAGT 57.772 42.857 6.45 0.00 0.00 3.85
162 163 3.565307 TGGCTCAAAAGATGTTGGAGTT 58.435 40.909 6.45 0.00 0.00 3.01
163 164 3.318839 TGGCTCAAAAGATGTTGGAGTTG 59.681 43.478 6.45 0.00 0.00 3.16
164 165 3.319122 GGCTCAAAAGATGTTGGAGTTGT 59.681 43.478 6.45 0.00 0.00 3.32
165 166 4.518970 GGCTCAAAAGATGTTGGAGTTGTA 59.481 41.667 6.45 0.00 0.00 2.41
166 167 5.452777 GCTCAAAAGATGTTGGAGTTGTAC 58.547 41.667 6.45 0.00 0.00 2.90
167 168 5.562890 GCTCAAAAGATGTTGGAGTTGTACC 60.563 44.000 6.45 0.00 0.00 3.34
168 169 4.825085 TCAAAAGATGTTGGAGTTGTACCC 59.175 41.667 0.00 0.00 0.00 3.69
169 170 4.447138 AAAGATGTTGGAGTTGTACCCA 57.553 40.909 0.00 0.00 0.00 4.51
170 171 4.657814 AAGATGTTGGAGTTGTACCCAT 57.342 40.909 0.00 0.00 31.66 4.00
171 172 4.657814 AGATGTTGGAGTTGTACCCATT 57.342 40.909 0.00 0.00 31.66 3.16
172 173 4.998051 AGATGTTGGAGTTGTACCCATTT 58.002 39.130 0.00 0.00 31.66 2.32
173 174 5.393866 AGATGTTGGAGTTGTACCCATTTT 58.606 37.500 0.00 0.00 31.66 1.82
174 175 4.927978 TGTTGGAGTTGTACCCATTTTG 57.072 40.909 0.00 0.00 31.66 2.44
175 176 3.068873 TGTTGGAGTTGTACCCATTTTGC 59.931 43.478 0.00 0.00 31.66 3.68
176 177 2.950781 TGGAGTTGTACCCATTTTGCA 58.049 42.857 0.00 0.00 0.00 4.08
177 178 3.300388 TGGAGTTGTACCCATTTTGCAA 58.700 40.909 0.00 0.00 0.00 4.08
178 179 3.320541 TGGAGTTGTACCCATTTTGCAAG 59.679 43.478 0.00 0.00 0.00 4.01
179 180 3.572255 GGAGTTGTACCCATTTTGCAAGA 59.428 43.478 0.00 0.00 0.00 3.02
180 181 4.321230 GGAGTTGTACCCATTTTGCAAGAG 60.321 45.833 0.00 0.00 0.00 2.85
181 182 3.573967 AGTTGTACCCATTTTGCAAGAGG 59.426 43.478 0.00 3.03 0.00 3.69
182 183 2.524306 TGTACCCATTTTGCAAGAGGG 58.476 47.619 23.62 23.62 45.20 4.30
183 184 1.204704 GTACCCATTTTGCAAGAGGGC 59.795 52.381 24.61 11.66 43.47 5.19
184 185 1.216178 CCCATTTTGCAAGAGGGCG 59.784 57.895 14.78 5.15 36.28 6.13
185 186 1.446618 CCATTTTGCAAGAGGGCGC 60.447 57.895 7.81 0.00 36.28 6.53
186 187 1.289694 CATTTTGCAAGAGGGCGCA 59.710 52.632 10.83 0.00 36.28 6.09
187 188 1.010419 CATTTTGCAAGAGGGCGCAC 61.010 55.000 10.83 5.15 38.00 5.34
188 189 1.462731 ATTTTGCAAGAGGGCGCACA 61.463 50.000 14.57 0.00 38.00 4.57
189 190 1.462731 TTTTGCAAGAGGGCGCACAT 61.463 50.000 14.57 0.00 38.00 3.21
190 191 1.865788 TTTGCAAGAGGGCGCACATC 61.866 55.000 14.57 7.50 38.00 3.06
191 192 2.747460 GCAAGAGGGCGCACATCA 60.747 61.111 14.57 0.00 30.77 3.07
192 193 2.117156 GCAAGAGGGCGCACATCAT 61.117 57.895 14.57 0.00 30.77 2.45
193 194 0.815213 GCAAGAGGGCGCACATCATA 60.815 55.000 14.57 0.00 30.77 2.15
194 195 1.667236 CAAGAGGGCGCACATCATAA 58.333 50.000 14.57 0.00 30.77 1.90
195 196 2.016318 CAAGAGGGCGCACATCATAAA 58.984 47.619 14.57 0.00 30.77 1.40
196 197 2.620115 CAAGAGGGCGCACATCATAAAT 59.380 45.455 14.57 0.00 30.77 1.40
197 198 2.936202 AGAGGGCGCACATCATAAATT 58.064 42.857 14.57 0.00 30.77 1.82
198 199 2.880890 AGAGGGCGCACATCATAAATTC 59.119 45.455 14.57 0.00 30.77 2.17
199 200 2.880890 GAGGGCGCACATCATAAATTCT 59.119 45.455 14.57 0.00 0.00 2.40
200 201 2.880890 AGGGCGCACATCATAAATTCTC 59.119 45.455 14.57 0.00 0.00 2.87
201 202 2.030805 GGGCGCACATCATAAATTCTCC 60.031 50.000 10.83 0.00 0.00 3.71
202 203 2.349817 GGCGCACATCATAAATTCTCCG 60.350 50.000 10.83 0.00 0.00 4.63
203 204 2.543848 GCGCACATCATAAATTCTCCGA 59.456 45.455 0.30 0.00 0.00 4.55
204 205 3.002246 GCGCACATCATAAATTCTCCGAA 59.998 43.478 0.30 0.00 0.00 4.30
205 206 4.319766 GCGCACATCATAAATTCTCCGAAT 60.320 41.667 0.30 0.00 0.00 3.34
206 207 5.142265 CGCACATCATAAATTCTCCGAATG 58.858 41.667 0.00 0.00 0.00 2.67
207 208 5.277490 CGCACATCATAAATTCTCCGAATGT 60.277 40.000 0.00 0.00 0.00 2.71
208 209 6.138761 GCACATCATAAATTCTCCGAATGTC 58.861 40.000 0.00 0.00 0.00 3.06
209 210 6.662616 CACATCATAAATTCTCCGAATGTCC 58.337 40.000 0.00 0.00 0.00 4.02
210 211 6.484643 CACATCATAAATTCTCCGAATGTCCT 59.515 38.462 0.00 0.00 0.00 3.85
211 212 7.012704 CACATCATAAATTCTCCGAATGTCCTT 59.987 37.037 0.00 0.00 0.00 3.36
212 213 6.925610 TCATAAATTCTCCGAATGTCCTTG 57.074 37.500 0.00 0.00 0.00 3.61
213 214 6.649155 TCATAAATTCTCCGAATGTCCTTGA 58.351 36.000 0.00 0.00 0.00 3.02
214 215 6.538742 TCATAAATTCTCCGAATGTCCTTGAC 59.461 38.462 0.00 0.00 0.00 3.18
215 216 2.762535 TTCTCCGAATGTCCTTGACC 57.237 50.000 0.00 0.00 0.00 4.02
216 217 0.902531 TCTCCGAATGTCCTTGACCC 59.097 55.000 0.00 0.00 0.00 4.46
217 218 0.613260 CTCCGAATGTCCTTGACCCA 59.387 55.000 0.00 0.00 0.00 4.51
218 219 1.210478 CTCCGAATGTCCTTGACCCAT 59.790 52.381 0.00 0.00 0.00 4.00
219 220 1.209504 TCCGAATGTCCTTGACCCATC 59.790 52.381 0.00 0.00 0.00 3.51
220 221 1.210478 CCGAATGTCCTTGACCCATCT 59.790 52.381 0.00 0.00 0.00 2.90
221 222 2.356125 CCGAATGTCCTTGACCCATCTT 60.356 50.000 0.00 0.00 0.00 2.40
222 223 3.118408 CCGAATGTCCTTGACCCATCTTA 60.118 47.826 0.00 0.00 0.00 2.10
223 224 4.513442 CGAATGTCCTTGACCCATCTTAA 58.487 43.478 0.00 0.00 0.00 1.85
224 225 4.332819 CGAATGTCCTTGACCCATCTTAAC 59.667 45.833 0.00 0.00 0.00 2.01
225 226 3.328382 TGTCCTTGACCCATCTTAACG 57.672 47.619 0.00 0.00 0.00 3.18
226 227 2.027561 TGTCCTTGACCCATCTTAACGG 60.028 50.000 0.00 0.00 0.00 4.44
233 234 2.710096 CCCATCTTAACGGGTGTGAT 57.290 50.000 0.00 0.00 37.70 3.06
234 235 3.830744 CCCATCTTAACGGGTGTGATA 57.169 47.619 0.00 0.00 37.70 2.15
235 236 4.145365 CCCATCTTAACGGGTGTGATAA 57.855 45.455 0.00 0.00 37.70 1.75
236 237 4.519213 CCCATCTTAACGGGTGTGATAAA 58.481 43.478 0.00 0.00 37.70 1.40
237 238 4.944930 CCCATCTTAACGGGTGTGATAAAA 59.055 41.667 0.00 0.00 37.70 1.52
238 239 5.416326 CCCATCTTAACGGGTGTGATAAAAA 59.584 40.000 0.00 0.00 37.70 1.94
276 277 9.593565 TGTTATATCAATATGTCAGGAGAGAGT 57.406 33.333 0.00 0.00 0.00 3.24
277 278 9.853555 GTTATATCAATATGTCAGGAGAGAGTG 57.146 37.037 0.00 0.00 0.00 3.51
278 279 9.593565 TTATATCAATATGTCAGGAGAGAGTGT 57.406 33.333 0.00 0.00 0.00 3.55
279 280 6.805016 ATCAATATGTCAGGAGAGAGTGTT 57.195 37.500 0.00 0.00 0.00 3.32
280 281 6.214191 TCAATATGTCAGGAGAGAGTGTTC 57.786 41.667 0.00 0.00 0.00 3.18
281 282 5.127845 TCAATATGTCAGGAGAGAGTGTTCC 59.872 44.000 0.00 0.00 0.00 3.62
282 283 2.381752 TGTCAGGAGAGAGTGTTCCA 57.618 50.000 0.00 0.00 35.88 3.53
283 284 2.677914 TGTCAGGAGAGAGTGTTCCAA 58.322 47.619 0.00 0.00 35.88 3.53
284 285 3.038280 TGTCAGGAGAGAGTGTTCCAAA 58.962 45.455 0.00 0.00 35.88 3.28
285 286 3.454447 TGTCAGGAGAGAGTGTTCCAAAA 59.546 43.478 0.00 0.00 35.88 2.44
286 287 4.080582 TGTCAGGAGAGAGTGTTCCAAAAA 60.081 41.667 0.00 0.00 35.88 1.94
305 306 3.471495 AAAAAGAGAATTACGCCGCTG 57.529 42.857 0.00 0.00 0.00 5.18
306 307 0.727398 AAAGAGAATTACGCCGCTGC 59.273 50.000 0.00 0.00 0.00 5.25
307 308 1.090052 AAGAGAATTACGCCGCTGCC 61.090 55.000 0.00 0.00 0.00 4.85
308 309 1.521681 GAGAATTACGCCGCTGCCT 60.522 57.895 0.00 0.00 0.00 4.75
309 310 1.078426 AGAATTACGCCGCTGCCTT 60.078 52.632 0.00 0.00 0.00 4.35
310 311 1.090052 AGAATTACGCCGCTGCCTTC 61.090 55.000 0.00 0.00 0.00 3.46
311 312 1.078426 AATTACGCCGCTGCCTTCT 60.078 52.632 0.00 0.00 0.00 2.85
312 313 0.676782 AATTACGCCGCTGCCTTCTT 60.677 50.000 0.00 0.00 0.00 2.52
313 314 1.090052 ATTACGCCGCTGCCTTCTTC 61.090 55.000 0.00 0.00 0.00 2.87
314 315 2.443260 TTACGCCGCTGCCTTCTTCA 62.443 55.000 0.00 0.00 0.00 3.02
315 316 3.793144 CGCCGCTGCCTTCTTCAC 61.793 66.667 0.00 0.00 0.00 3.18
316 317 2.359230 GCCGCTGCCTTCTTCACT 60.359 61.111 0.00 0.00 0.00 3.41
317 318 1.079127 GCCGCTGCCTTCTTCACTA 60.079 57.895 0.00 0.00 0.00 2.74
318 319 0.462759 GCCGCTGCCTTCTTCACTAT 60.463 55.000 0.00 0.00 0.00 2.12
319 320 1.293924 CCGCTGCCTTCTTCACTATG 58.706 55.000 0.00 0.00 0.00 2.23
320 321 0.654683 CGCTGCCTTCTTCACTATGC 59.345 55.000 0.00 0.00 0.00 3.14
321 322 1.742761 GCTGCCTTCTTCACTATGCA 58.257 50.000 0.00 0.00 0.00 3.96
322 323 2.086869 GCTGCCTTCTTCACTATGCAA 58.913 47.619 0.00 0.00 0.00 4.08
323 324 2.489329 GCTGCCTTCTTCACTATGCAAA 59.511 45.455 0.00 0.00 0.00 3.68
324 325 3.057315 GCTGCCTTCTTCACTATGCAAAA 60.057 43.478 0.00 0.00 0.00 2.44
325 326 4.559300 GCTGCCTTCTTCACTATGCAAAAA 60.559 41.667 0.00 0.00 0.00 1.94
351 352 9.880157 AAATTAGGTGATTTGGAATGAGAAATG 57.120 29.630 0.00 0.00 0.00 2.32
352 353 5.334724 AGGTGATTTGGAATGAGAAATGC 57.665 39.130 0.00 0.00 0.00 3.56
353 354 4.107622 GGTGATTTGGAATGAGAAATGCG 58.892 43.478 0.00 0.00 0.00 4.73
354 355 4.142403 GGTGATTTGGAATGAGAAATGCGA 60.142 41.667 0.00 0.00 0.00 5.10
355 356 5.032863 GTGATTTGGAATGAGAAATGCGAG 58.967 41.667 0.00 0.00 0.00 5.03
356 357 4.701651 TGATTTGGAATGAGAAATGCGAGT 59.298 37.500 0.00 0.00 0.00 4.18
357 358 4.424061 TTTGGAATGAGAAATGCGAGTG 57.576 40.909 0.00 0.00 0.00 3.51
358 359 3.057969 TGGAATGAGAAATGCGAGTGT 57.942 42.857 0.00 0.00 0.00 3.55
359 360 3.411446 TGGAATGAGAAATGCGAGTGTT 58.589 40.909 0.00 0.00 0.00 3.32
360 361 3.436704 TGGAATGAGAAATGCGAGTGTTC 59.563 43.478 0.00 0.00 0.00 3.18
361 362 3.181506 GGAATGAGAAATGCGAGTGTTCC 60.182 47.826 0.00 0.00 0.00 3.62
362 363 2.542020 TGAGAAATGCGAGTGTTCCA 57.458 45.000 0.00 0.00 0.00 3.53
363 364 2.844946 TGAGAAATGCGAGTGTTCCAA 58.155 42.857 0.00 0.00 0.00 3.53
364 365 3.210227 TGAGAAATGCGAGTGTTCCAAA 58.790 40.909 0.00 0.00 0.00 3.28
365 366 3.629855 TGAGAAATGCGAGTGTTCCAAAA 59.370 39.130 0.00 0.00 0.00 2.44
366 367 4.097135 TGAGAAATGCGAGTGTTCCAAAAA 59.903 37.500 0.00 0.00 0.00 1.94
388 389 7.494922 AAAAATATATGCCACCAACTTTCCT 57.505 32.000 0.00 0.00 0.00 3.36
389 390 8.602472 AAAAATATATGCCACCAACTTTCCTA 57.398 30.769 0.00 0.00 0.00 2.94
390 391 8.602472 AAAATATATGCCACCAACTTTCCTAA 57.398 30.769 0.00 0.00 0.00 2.69
391 392 8.782137 AAATATATGCCACCAACTTTCCTAAT 57.218 30.769 0.00 0.00 0.00 1.73
392 393 7.765695 ATATATGCCACCAACTTTCCTAATG 57.234 36.000 0.00 0.00 0.00 1.90
393 394 3.237268 TGCCACCAACTTTCCTAATGT 57.763 42.857 0.00 0.00 0.00 2.71
394 395 2.890311 TGCCACCAACTTTCCTAATGTG 59.110 45.455 0.00 0.00 0.00 3.21
395 396 2.352715 GCCACCAACTTTCCTAATGTGC 60.353 50.000 0.00 0.00 0.00 4.57
396 397 2.890311 CCACCAACTTTCCTAATGTGCA 59.110 45.455 0.00 0.00 0.00 4.57
397 398 3.511146 CCACCAACTTTCCTAATGTGCAT 59.489 43.478 0.00 0.00 0.00 3.96
398 399 4.487948 CACCAACTTTCCTAATGTGCATG 58.512 43.478 0.00 0.00 0.00 4.06
399 400 4.218200 CACCAACTTTCCTAATGTGCATGA 59.782 41.667 0.00 0.00 0.00 3.07
400 401 4.832266 ACCAACTTTCCTAATGTGCATGAA 59.168 37.500 0.00 0.00 0.00 2.57
401 402 5.304101 ACCAACTTTCCTAATGTGCATGAAA 59.696 36.000 0.00 0.00 0.00 2.69
402 403 5.865552 CCAACTTTCCTAATGTGCATGAAAG 59.134 40.000 15.71 15.71 44.57 2.62
403 404 6.294675 CCAACTTTCCTAATGTGCATGAAAGA 60.295 38.462 20.51 1.61 42.72 2.52
404 405 6.899393 ACTTTCCTAATGTGCATGAAAGAA 57.101 33.333 20.51 6.44 42.72 2.52
405 406 7.288810 ACTTTCCTAATGTGCATGAAAGAAA 57.711 32.000 20.51 11.76 42.72 2.52
406 407 7.147976 ACTTTCCTAATGTGCATGAAAGAAAC 58.852 34.615 20.51 0.00 42.72 2.78
407 408 5.295431 TCCTAATGTGCATGAAAGAAACG 57.705 39.130 0.00 0.00 0.00 3.60
408 409 5.000591 TCCTAATGTGCATGAAAGAAACGA 58.999 37.500 0.00 0.00 0.00 3.85
409 410 5.088739 CCTAATGTGCATGAAAGAAACGAC 58.911 41.667 0.00 0.00 0.00 4.34
410 411 4.836125 AATGTGCATGAAAGAAACGACT 57.164 36.364 0.00 0.00 0.00 4.18
411 412 4.836125 ATGTGCATGAAAGAAACGACTT 57.164 36.364 0.00 0.00 0.00 3.01
412 413 3.951306 TGTGCATGAAAGAAACGACTTG 58.049 40.909 0.00 0.00 0.00 3.16
413 414 3.625313 TGTGCATGAAAGAAACGACTTGA 59.375 39.130 0.00 0.00 0.00 3.02
414 415 4.275689 TGTGCATGAAAGAAACGACTTGAT 59.724 37.500 0.00 0.00 0.00 2.57
415 416 4.614284 GTGCATGAAAGAAACGACTTGATG 59.386 41.667 0.00 0.51 0.00 3.07
416 417 3.605486 GCATGAAAGAAACGACTTGATGC 59.395 43.478 0.00 15.21 38.32 3.91
417 418 4.786507 CATGAAAGAAACGACTTGATGCA 58.213 39.130 0.00 0.00 0.00 3.96
418 419 5.396484 CATGAAAGAAACGACTTGATGCAT 58.604 37.500 0.00 0.00 0.00 3.96
419 420 4.786507 TGAAAGAAACGACTTGATGCATG 58.213 39.130 2.46 0.00 0.00 4.06
420 421 3.837213 AAGAAACGACTTGATGCATGG 57.163 42.857 2.46 0.00 0.00 3.66
421 422 2.086869 AGAAACGACTTGATGCATGGG 58.913 47.619 2.46 0.00 0.00 4.00
422 423 1.812571 GAAACGACTTGATGCATGGGT 59.187 47.619 2.46 0.00 0.00 4.51
423 424 1.167851 AACGACTTGATGCATGGGTG 58.832 50.000 2.46 0.00 0.00 4.61
448 449 3.702048 GCCTGGGCGTGAGGTGTA 61.702 66.667 0.00 0.00 32.60 2.90
449 450 3.065306 CCTGGGCGTGAGGTGTAA 58.935 61.111 0.00 0.00 0.00 2.41
450 451 1.602237 CCTGGGCGTGAGGTGTAAT 59.398 57.895 0.00 0.00 0.00 1.89
451 452 0.828022 CCTGGGCGTGAGGTGTAATA 59.172 55.000 0.00 0.00 0.00 0.98
452 453 1.472728 CCTGGGCGTGAGGTGTAATAC 60.473 57.143 0.00 0.00 0.00 1.89
453 454 1.480954 CTGGGCGTGAGGTGTAATACT 59.519 52.381 0.00 0.00 0.00 2.12
454 455 1.479323 TGGGCGTGAGGTGTAATACTC 59.521 52.381 0.00 0.00 0.00 2.59
455 456 1.202498 GGGCGTGAGGTGTAATACTCC 60.202 57.143 3.46 3.46 32.80 3.85
456 457 1.202498 GGCGTGAGGTGTAATACTCCC 60.202 57.143 7.80 0.35 32.39 4.30
457 458 1.755380 GCGTGAGGTGTAATACTCCCT 59.245 52.381 7.80 5.09 32.39 4.20
458 459 2.223758 GCGTGAGGTGTAATACTCCCTC 60.224 54.545 17.19 17.19 43.13 4.30
459 460 2.361438 CGTGAGGTGTAATACTCCCTCC 59.639 54.545 19.60 13.15 42.33 4.30
460 461 3.371965 GTGAGGTGTAATACTCCCTCCA 58.628 50.000 19.60 9.59 42.33 3.86
461 462 3.967987 GTGAGGTGTAATACTCCCTCCAT 59.032 47.826 19.60 0.22 42.33 3.41
462 463 4.409247 GTGAGGTGTAATACTCCCTCCATT 59.591 45.833 19.60 0.00 42.33 3.16
463 464 5.036916 TGAGGTGTAATACTCCCTCCATTT 58.963 41.667 19.60 0.00 42.33 2.32
464 465 5.130477 TGAGGTGTAATACTCCCTCCATTTC 59.870 44.000 19.60 7.22 42.33 2.17
465 466 5.036916 AGGTGTAATACTCCCTCCATTTCA 58.963 41.667 7.80 0.00 32.39 2.69
466 467 5.672194 AGGTGTAATACTCCCTCCATTTCAT 59.328 40.000 7.80 0.00 32.39 2.57
467 468 6.160459 AGGTGTAATACTCCCTCCATTTCATT 59.840 38.462 7.80 0.00 32.39 2.57
468 469 6.833933 GGTGTAATACTCCCTCCATTTCATTT 59.166 38.462 0.21 0.00 0.00 2.32
469 470 7.342026 GGTGTAATACTCCCTCCATTTCATTTT 59.658 37.037 0.21 0.00 0.00 1.82
470 471 9.403583 GTGTAATACTCCCTCCATTTCATTTTA 57.596 33.333 0.00 0.00 0.00 1.52
471 472 9.627123 TGTAATACTCCCTCCATTTCATTTTAG 57.373 33.333 0.00 0.00 0.00 1.85
472 473 9.628500 GTAATACTCCCTCCATTTCATTTTAGT 57.372 33.333 0.00 0.00 0.00 2.24
474 475 9.547279 AATACTCCCTCCATTTCATTTTAGTTT 57.453 29.630 0.00 0.00 0.00 2.66
475 476 7.232118 ACTCCCTCCATTTCATTTTAGTTTG 57.768 36.000 0.00 0.00 0.00 2.93
476 477 6.036577 TCCCTCCATTTCATTTTAGTTTGC 57.963 37.500 0.00 0.00 0.00 3.68
477 478 5.541868 TCCCTCCATTTCATTTTAGTTTGCA 59.458 36.000 0.00 0.00 0.00 4.08
478 479 6.213195 TCCCTCCATTTCATTTTAGTTTGCAT 59.787 34.615 0.00 0.00 0.00 3.96
479 480 7.398618 TCCCTCCATTTCATTTTAGTTTGCATA 59.601 33.333 0.00 0.00 0.00 3.14
480 481 8.206189 CCCTCCATTTCATTTTAGTTTGCATAT 58.794 33.333 0.00 0.00 0.00 1.78
496 497 8.806146 AGTTTGCATATAAGATTTGGTCAAAGT 58.194 29.630 2.55 0.00 33.32 2.66
497 498 9.076596 GTTTGCATATAAGATTTGGTCAAAGTC 57.923 33.333 2.55 1.51 33.32 3.01
498 499 7.936496 TGCATATAAGATTTGGTCAAAGTCA 57.064 32.000 2.55 0.00 33.32 3.41
499 500 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
500 501 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
501 502 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
525 526 8.959705 ACTTTGTAAAGTTTGACTAGCTAAGT 57.040 30.769 4.25 0.00 46.52 2.24
669 670 6.610741 ACTTTGTGAAGTTTGACTCTGATC 57.389 37.500 0.00 0.00 43.48 2.92
670 671 6.115446 ACTTTGTGAAGTTTGACTCTGATCA 58.885 36.000 0.00 0.00 43.48 2.92
671 672 6.599244 ACTTTGTGAAGTTTGACTCTGATCAA 59.401 34.615 0.00 0.00 43.48 2.57
672 673 7.121168 ACTTTGTGAAGTTTGACTCTGATCAAA 59.879 33.333 0.00 9.61 43.48 2.69
690 691 9.956720 CTGATCAAATCTTATATGTTTTGGACC 57.043 33.333 16.28 9.85 31.34 4.46
691 692 8.620416 TGATCAAATCTTATATGTTTTGGACCG 58.380 33.333 16.28 0.00 31.34 4.79
692 693 8.746052 ATCAAATCTTATATGTTTTGGACCGA 57.254 30.769 16.28 0.00 31.34 4.69
693 694 8.568676 TCAAATCTTATATGTTTTGGACCGAA 57.431 30.769 16.28 0.00 31.34 4.30
694 695 8.455682 TCAAATCTTATATGTTTTGGACCGAAC 58.544 33.333 16.28 0.00 31.34 3.95
695 696 7.931578 AATCTTATATGTTTTGGACCGAACA 57.068 32.000 13.65 13.65 39.78 3.18
696 697 6.730960 TCTTATATGTTTTGGACCGAACAC 57.269 37.500 13.58 7.37 38.46 3.32
697 698 5.644636 TCTTATATGTTTTGGACCGAACACC 59.355 40.000 13.58 0.00 38.46 4.16
698 699 1.324383 ATGTTTTGGACCGAACACCC 58.676 50.000 13.58 0.00 38.46 4.61
699 700 0.752376 TGTTTTGGACCGAACACCCC 60.752 55.000 8.68 0.00 31.30 4.95
700 701 1.152715 TTTTGGACCGAACACCCCC 60.153 57.895 0.00 0.00 0.00 5.40
701 702 1.647334 TTTTGGACCGAACACCCCCT 61.647 55.000 0.00 0.00 0.00 4.79
702 703 1.647334 TTTGGACCGAACACCCCCTT 61.647 55.000 0.00 0.00 0.00 3.95
703 704 2.033602 GGACCGAACACCCCCTTG 59.966 66.667 0.00 0.00 0.00 3.61
704 705 2.826003 GGACCGAACACCCCCTTGT 61.826 63.158 0.00 0.00 0.00 3.16
705 706 1.302271 GACCGAACACCCCCTTGTC 60.302 63.158 0.00 0.00 0.00 3.18
706 707 1.765597 GACCGAACACCCCCTTGTCT 61.766 60.000 0.00 0.00 0.00 3.41
707 708 1.350310 ACCGAACACCCCCTTGTCTT 61.350 55.000 0.00 0.00 0.00 3.01
708 709 0.605589 CCGAACACCCCCTTGTCTTC 60.606 60.000 0.00 0.00 0.00 2.87
709 710 0.396811 CGAACACCCCCTTGTCTTCT 59.603 55.000 0.00 0.00 0.00 2.85
710 711 1.621814 CGAACACCCCCTTGTCTTCTA 59.378 52.381 0.00 0.00 0.00 2.10
711 712 2.038033 CGAACACCCCCTTGTCTTCTAA 59.962 50.000 0.00 0.00 0.00 2.10
712 713 3.409570 GAACACCCCCTTGTCTTCTAAC 58.590 50.000 0.00 0.00 0.00 2.34
713 714 1.703513 ACACCCCCTTGTCTTCTAACC 59.296 52.381 0.00 0.00 0.00 2.85
714 715 1.702957 CACCCCCTTGTCTTCTAACCA 59.297 52.381 0.00 0.00 0.00 3.67
715 716 1.703513 ACCCCCTTGTCTTCTAACCAC 59.296 52.381 0.00 0.00 0.00 4.16
716 717 1.004394 CCCCCTTGTCTTCTAACCACC 59.996 57.143 0.00 0.00 0.00 4.61
717 718 1.004394 CCCCTTGTCTTCTAACCACCC 59.996 57.143 0.00 0.00 0.00 4.61
718 719 1.004394 CCCTTGTCTTCTAACCACCCC 59.996 57.143 0.00 0.00 0.00 4.95
719 720 1.985895 CCTTGTCTTCTAACCACCCCT 59.014 52.381 0.00 0.00 0.00 4.79
720 721 3.178865 CCTTGTCTTCTAACCACCCCTA 58.821 50.000 0.00 0.00 0.00 3.53
721 722 3.585732 CCTTGTCTTCTAACCACCCCTAA 59.414 47.826 0.00 0.00 0.00 2.69
722 723 4.042435 CCTTGTCTTCTAACCACCCCTAAA 59.958 45.833 0.00 0.00 0.00 1.85
723 724 5.457052 CCTTGTCTTCTAACCACCCCTAAAA 60.457 44.000 0.00 0.00 0.00 1.52
724 725 5.649970 TGTCTTCTAACCACCCCTAAAAA 57.350 39.130 0.00 0.00 0.00 1.94
780 785 5.128008 ACCTTGTCTTCTAACCTATCTCAGC 59.872 44.000 0.00 0.00 0.00 4.26
787 792 0.831307 AACCTATCTCAGCCCGAACC 59.169 55.000 0.00 0.00 0.00 3.62
847 852 2.747855 GCTGCTTCCCCTCAACCG 60.748 66.667 0.00 0.00 0.00 4.44
871 876 2.184579 GTCCTCACGCCCAGTAGC 59.815 66.667 0.00 0.00 0.00 3.58
1107 1133 2.749044 CTGAGCGGCAGCCACAAT 60.749 61.111 13.30 0.00 46.67 2.71
1229 1255 1.812571 GAAATCTGCCGCAAAGAAGGA 59.187 47.619 0.00 0.00 0.00 3.36
1303 1332 2.602257 TGTCATCGGCATCTACAAGG 57.398 50.000 0.00 0.00 0.00 3.61
1353 1382 0.824109 ATTCGGTCTGCGATCCTTCA 59.176 50.000 0.00 0.00 0.00 3.02
1355 1384 1.880340 CGGTCTGCGATCCTTCAGC 60.880 63.158 0.00 0.00 0.00 4.26
1383 1412 1.670406 CAAAGGCTGCTCTCTGCGT 60.670 57.895 0.00 0.00 46.63 5.24
1437 1466 4.212214 GGGCTAAAGAATGCTCTGTATTCG 59.788 45.833 3.50 0.00 39.11 3.34
1516 1545 0.750850 GCAGCCTGATGGAATTGCAT 59.249 50.000 12.76 12.76 36.99 3.96
1534 1563 1.470098 CATCCTCTGCTTTGGAAACCG 59.530 52.381 0.00 0.00 35.81 4.44
1605 1646 3.540314 AGTCATCTGTCCTGCATTCTC 57.460 47.619 0.00 0.00 0.00 2.87
1608 1649 2.100418 TCATCTGTCCTGCATTCTCGAG 59.900 50.000 5.93 5.93 0.00 4.04
1629 1670 1.702182 TTGATGGTGCTTGCAAAGGA 58.298 45.000 0.00 0.00 46.35 3.36
1662 1703 1.227556 AGGTGCCGGCGTGATAATC 60.228 57.895 23.90 2.50 0.00 1.75
1692 1733 1.658717 CGGATCCGTGATCGCTCAC 60.659 63.158 26.35 9.34 46.89 3.51
1716 1757 0.963355 GCGAGGGTTTGGGTATTGCA 60.963 55.000 0.00 0.00 0.00 4.08
1719 1760 2.243810 GAGGGTTTGGGTATTGCAACA 58.756 47.619 0.00 0.00 0.00 3.33
1725 1766 5.337975 GGGTTTGGGTATTGCAACATGTAAT 60.338 40.000 0.00 0.00 36.64 1.89
1761 1802 0.682209 CATTGCTCCTGGGGTTGAGG 60.682 60.000 0.00 0.00 0.00 3.86
1770 1811 1.207488 TGGGGTTGAGGTATGCTGCT 61.207 55.000 0.00 0.00 0.00 4.24
1788 1829 4.095036 GCTGCTAACAAGGGATTCAAGTAC 59.905 45.833 0.00 0.00 0.00 2.73
1791 1832 4.694037 GCTAACAAGGGATTCAAGTACGTT 59.306 41.667 0.00 0.00 0.00 3.99
1815 1856 2.284190 GCTCAAGGCGATTCTAAGCTT 58.716 47.619 3.48 3.48 0.00 3.74
1866 1907 5.643777 GCGTGTTAGGAATGATAATATGGCT 59.356 40.000 0.00 0.00 0.00 4.75
1917 1958 6.095440 TCAAGGGAAAGTTTCTTCAGTTTCAG 59.905 38.462 15.05 0.00 37.70 3.02
2008 2049 3.206150 GTTGGTGAAGTTCAAGAGCAGA 58.794 45.455 7.25 0.00 0.00 4.26
2204 2245 2.667171 GCGAGCTGGAGTCGAGATATTC 60.667 54.545 6.31 0.00 39.92 1.75
2290 2331 4.941263 TGGCACTAGTATTTAACTTGCTGG 59.059 41.667 0.00 0.00 40.40 4.85
2322 2363 7.094075 TGGAGACTACATACAACGTTTGATACT 60.094 37.037 0.00 0.00 0.00 2.12
2439 2485 8.268850 AGCATAGTTAATTTATATTGCCTCGG 57.731 34.615 0.00 0.00 0.00 4.63
2456 2502 3.476552 CTCGGCAAAGGGAAATATGCTA 58.523 45.455 0.00 0.00 38.79 3.49
2472 2518 4.843220 ATGCTACTGCTGCAATTTATCC 57.157 40.909 3.02 0.00 44.01 2.59
2478 2524 3.127548 ACTGCTGCAATTTATCCGTCTTG 59.872 43.478 3.02 0.00 0.00 3.02
2537 2583 9.875675 CAAAATACTAATGCAATCTCTAAGAGC 57.124 33.333 0.00 0.00 0.00 4.09
2551 2598 6.170506 TCTCTAAGAGCGCCTTTATTCAAAA 58.829 36.000 14.87 0.00 36.34 2.44
2711 2758 9.520204 CCATCAACTCAAACCATTGTTATAATC 57.480 33.333 0.00 0.00 37.79 1.75
2745 2792 8.450578 TCTTTCTATGCTTTCAGAACTTTTCA 57.549 30.769 0.00 0.00 30.67 2.69
2808 2855 8.153550 AGAGGATTTGGCACTCTAATTATACAG 58.846 37.037 3.73 0.00 39.65 2.74
2810 2857 8.275040 AGGATTTGGCACTCTAATTATACAGTT 58.725 33.333 0.00 0.00 0.00 3.16
2893 2940 6.794374 GGTTACGAAGGAACCAAGTTAAAAA 58.206 36.000 9.17 0.00 44.92 1.94
2894 2941 6.914215 GGTTACGAAGGAACCAAGTTAAAAAG 59.086 38.462 9.17 0.00 44.92 2.27
2895 2942 4.928601 ACGAAGGAACCAAGTTAAAAAGC 58.071 39.130 0.00 0.00 0.00 3.51
2896 2943 4.399934 ACGAAGGAACCAAGTTAAAAAGCA 59.600 37.500 0.00 0.00 0.00 3.91
2897 2944 4.976116 CGAAGGAACCAAGTTAAAAAGCAG 59.024 41.667 0.00 0.00 0.00 4.24
2898 2945 5.449999 CGAAGGAACCAAGTTAAAAAGCAGT 60.450 40.000 0.00 0.00 0.00 4.40
2899 2946 5.515797 AGGAACCAAGTTAAAAAGCAGTC 57.484 39.130 0.00 0.00 0.00 3.51
2900 2947 5.201243 AGGAACCAAGTTAAAAAGCAGTCT 58.799 37.500 0.00 0.00 0.00 3.24
2901 2948 6.362248 AGGAACCAAGTTAAAAAGCAGTCTA 58.638 36.000 0.00 0.00 0.00 2.59
2937 2984 0.800683 CGACTCGTGTGTGTGTGTGT 60.801 55.000 0.00 0.00 0.00 3.72
2943 2992 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2949 2998 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2953 3002 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2956 3005 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2957 3006 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2958 3007 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2959 3008 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2960 3009 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2961 3010 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2962 3011 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2963 3012 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
2964 3013 1.136565 GTGTGTGTGTGTGTGTGGC 59.863 57.895 0.00 0.00 0.00 5.01
2965 3014 1.302832 TGTGTGTGTGTGTGTGGCA 60.303 52.632 0.00 0.00 0.00 4.92
2966 3015 0.679321 TGTGTGTGTGTGTGTGGCAT 60.679 50.000 0.00 0.00 0.00 4.40
2967 3016 0.029300 GTGTGTGTGTGTGTGGCATC 59.971 55.000 0.00 0.00 0.00 3.91
2968 3017 1.279539 GTGTGTGTGTGTGGCATCG 59.720 57.895 0.00 0.00 0.00 3.84
2969 3018 1.144936 TGTGTGTGTGTGGCATCGA 59.855 52.632 0.00 0.00 0.00 3.59
2970 3019 0.879839 TGTGTGTGTGTGGCATCGAG 60.880 55.000 0.00 0.00 0.00 4.04
2971 3020 0.880278 GTGTGTGTGTGGCATCGAGT 60.880 55.000 0.00 0.00 0.00 4.18
2972 3021 0.879839 TGTGTGTGTGGCATCGAGTG 60.880 55.000 0.00 0.00 0.00 3.51
2973 3022 0.599991 GTGTGTGTGGCATCGAGTGA 60.600 55.000 0.00 0.00 0.00 3.41
2974 3023 0.321346 TGTGTGTGGCATCGAGTGAT 59.679 50.000 0.00 0.00 34.28 3.06
3022 3071 8.981647 ACTATGAAAAATGTTGAACAAATCAGC 58.018 29.630 0.62 0.00 39.77 4.26
3023 3072 9.199982 CTATGAAAAATGTTGAACAAATCAGCT 57.800 29.630 0.62 0.00 39.76 4.24
3024 3073 7.846644 TGAAAAATGTTGAACAAATCAGCTT 57.153 28.000 0.62 0.00 39.76 3.74
3025 3074 8.939201 TGAAAAATGTTGAACAAATCAGCTTA 57.061 26.923 0.62 0.00 39.76 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.766150 TTTCATTGAAATGTCAACCGAGT 57.234 34.783 7.74 0.00 46.40 4.18
1 2 8.915871 ATTATTTCATTGAAATGTCAACCGAG 57.084 30.769 27.24 0.00 46.40 4.63
11 12 9.581099 GGGTGAACGTAATTATTTCATTGAAAT 57.419 29.630 23.96 23.96 43.49 2.17
12 13 8.798402 AGGGTGAACGTAATTATTTCATTGAAA 58.202 29.630 13.88 13.88 35.94 2.69
13 14 8.343168 AGGGTGAACGTAATTATTTCATTGAA 57.657 30.769 12.92 0.00 32.10 2.69
14 15 7.931578 AGGGTGAACGTAATTATTTCATTGA 57.068 32.000 12.92 0.00 32.10 2.57
15 16 7.009174 GCAAGGGTGAACGTAATTATTTCATTG 59.991 37.037 12.92 13.39 32.10 2.82
16 17 7.033185 GCAAGGGTGAACGTAATTATTTCATT 58.967 34.615 12.92 4.54 32.10 2.57
17 18 6.151985 TGCAAGGGTGAACGTAATTATTTCAT 59.848 34.615 12.92 0.00 32.10 2.57
18 19 5.473846 TGCAAGGGTGAACGTAATTATTTCA 59.526 36.000 7.90 7.90 0.00 2.69
19 20 5.945155 TGCAAGGGTGAACGTAATTATTTC 58.055 37.500 0.00 0.00 0.00 2.17
20 21 5.968528 TGCAAGGGTGAACGTAATTATTT 57.031 34.783 0.00 0.00 0.00 1.40
21 22 6.524101 AATGCAAGGGTGAACGTAATTATT 57.476 33.333 0.00 0.00 0.00 1.40
22 23 6.524101 AAATGCAAGGGTGAACGTAATTAT 57.476 33.333 0.00 0.00 0.00 1.28
23 24 5.968528 AAATGCAAGGGTGAACGTAATTA 57.031 34.783 0.00 0.00 0.00 1.40
24 25 4.864704 AAATGCAAGGGTGAACGTAATT 57.135 36.364 0.00 0.00 0.00 1.40
25 26 5.475564 AGTTAAATGCAAGGGTGAACGTAAT 59.524 36.000 0.00 0.00 0.00 1.89
26 27 4.822896 AGTTAAATGCAAGGGTGAACGTAA 59.177 37.500 0.00 0.00 0.00 3.18
27 28 4.391155 AGTTAAATGCAAGGGTGAACGTA 58.609 39.130 0.00 0.00 0.00 3.57
28 29 3.219281 AGTTAAATGCAAGGGTGAACGT 58.781 40.909 0.00 0.00 0.00 3.99
29 30 3.252215 TGAGTTAAATGCAAGGGTGAACG 59.748 43.478 0.00 0.00 0.00 3.95
30 31 4.846779 TGAGTTAAATGCAAGGGTGAAC 57.153 40.909 0.00 0.00 0.00 3.18
31 32 6.418057 AATTGAGTTAAATGCAAGGGTGAA 57.582 33.333 0.00 0.00 0.00 3.18
32 33 7.716799 ATAATTGAGTTAAATGCAAGGGTGA 57.283 32.000 0.00 0.00 0.00 4.02
33 34 9.520204 CTAATAATTGAGTTAAATGCAAGGGTG 57.480 33.333 0.00 0.00 0.00 4.61
34 35 8.197439 GCTAATAATTGAGTTAAATGCAAGGGT 58.803 33.333 0.00 0.00 0.00 4.34
35 36 8.416329 AGCTAATAATTGAGTTAAATGCAAGGG 58.584 33.333 0.00 0.00 0.00 3.95
36 37 9.807649 AAGCTAATAATTGAGTTAAATGCAAGG 57.192 29.630 0.00 0.00 0.00 3.61
50 51 9.817365 GCACAGTACATCATAAGCTAATAATTG 57.183 33.333 0.00 0.00 0.00 2.32
51 52 9.559732 TGCACAGTACATCATAAGCTAATAATT 57.440 29.630 0.00 0.00 0.00 1.40
52 53 9.730705 ATGCACAGTACATCATAAGCTAATAAT 57.269 29.630 0.00 0.00 0.00 1.28
53 54 9.559732 AATGCACAGTACATCATAAGCTAATAA 57.440 29.630 0.00 0.00 0.00 1.40
54 55 9.559732 AAATGCACAGTACATCATAAGCTAATA 57.440 29.630 0.00 0.00 0.00 0.98
55 56 8.455903 AAATGCACAGTACATCATAAGCTAAT 57.544 30.769 0.00 0.00 0.00 1.73
56 57 7.552330 TGAAATGCACAGTACATCATAAGCTAA 59.448 33.333 0.00 0.00 0.00 3.09
57 58 7.047271 TGAAATGCACAGTACATCATAAGCTA 58.953 34.615 0.00 0.00 0.00 3.32
58 59 5.882000 TGAAATGCACAGTACATCATAAGCT 59.118 36.000 0.00 0.00 0.00 3.74
59 60 6.122850 TGAAATGCACAGTACATCATAAGC 57.877 37.500 0.00 0.00 0.00 3.09
60 61 8.186163 ACATTGAAATGCACAGTACATCATAAG 58.814 33.333 2.92 0.00 40.04 1.73
61 62 7.969508 CACATTGAAATGCACAGTACATCATAA 59.030 33.333 2.92 0.00 40.04 1.90
62 63 7.121020 ACACATTGAAATGCACAGTACATCATA 59.879 33.333 2.92 0.00 40.04 2.15
63 64 6.071784 ACACATTGAAATGCACAGTACATCAT 60.072 34.615 2.92 0.00 40.04 2.45
64 65 5.241285 ACACATTGAAATGCACAGTACATCA 59.759 36.000 2.92 0.00 40.04 3.07
65 66 5.702865 ACACATTGAAATGCACAGTACATC 58.297 37.500 2.92 0.00 40.04 3.06
66 67 5.710513 ACACATTGAAATGCACAGTACAT 57.289 34.783 2.92 0.00 40.04 2.29
67 68 5.762711 AGTACACATTGAAATGCACAGTACA 59.237 36.000 19.41 0.00 40.04 2.90
68 69 6.079763 CAGTACACATTGAAATGCACAGTAC 58.920 40.000 14.36 14.36 40.04 2.73
69 70 5.334802 GCAGTACACATTGAAATGCACAGTA 60.335 40.000 2.92 0.04 40.04 2.74
70 71 4.557296 GCAGTACACATTGAAATGCACAGT 60.557 41.667 2.92 0.86 40.04 3.55
71 72 3.916172 GCAGTACACATTGAAATGCACAG 59.084 43.478 2.92 0.00 40.04 3.66
72 73 3.317430 TGCAGTACACATTGAAATGCACA 59.683 39.130 2.92 0.00 40.04 4.57
73 74 3.899734 TGCAGTACACATTGAAATGCAC 58.100 40.909 2.92 0.08 40.04 4.57
74 75 4.581077 TTGCAGTACACATTGAAATGCA 57.419 36.364 2.92 8.59 40.04 3.96
75 76 4.925054 ACATTGCAGTACACATTGAAATGC 59.075 37.500 11.62 2.98 41.89 3.56
76 77 7.410800 AAACATTGCAGTACACATTGAAATG 57.589 32.000 10.55 10.55 43.18 2.32
77 78 9.195411 CTAAAACATTGCAGTACACATTGAAAT 57.805 29.630 14.17 0.39 0.00 2.17
78 79 8.194104 ACTAAAACATTGCAGTACACATTGAAA 58.806 29.630 14.17 0.00 0.00 2.69
79 80 7.711846 ACTAAAACATTGCAGTACACATTGAA 58.288 30.769 14.17 0.00 0.00 2.69
80 81 7.270757 ACTAAAACATTGCAGTACACATTGA 57.729 32.000 14.17 0.00 0.00 2.57
81 82 7.928908 AACTAAAACATTGCAGTACACATTG 57.071 32.000 0.00 2.71 0.00 2.82
82 83 7.042791 GCAAACTAAAACATTGCAGTACACATT 60.043 33.333 4.96 0.00 46.57 2.71
83 84 6.420604 GCAAACTAAAACATTGCAGTACACAT 59.579 34.615 4.96 0.00 46.57 3.21
84 85 5.746245 GCAAACTAAAACATTGCAGTACACA 59.254 36.000 4.96 0.00 46.57 3.72
85 86 6.197788 GCAAACTAAAACATTGCAGTACAC 57.802 37.500 4.96 0.00 46.57 2.90
92 93 4.448732 CCTTCTGGCAAACTAAAACATTGC 59.551 41.667 1.29 1.29 46.60 3.56
93 94 5.600696 ACCTTCTGGCAAACTAAAACATTG 58.399 37.500 0.00 0.00 36.63 2.82
94 95 5.507315 CGACCTTCTGGCAAACTAAAACATT 60.507 40.000 0.00 0.00 36.63 2.71
95 96 4.023193 CGACCTTCTGGCAAACTAAAACAT 60.023 41.667 0.00 0.00 36.63 2.71
96 97 3.314080 CGACCTTCTGGCAAACTAAAACA 59.686 43.478 0.00 0.00 36.63 2.83
97 98 3.304458 CCGACCTTCTGGCAAACTAAAAC 60.304 47.826 0.00 0.00 36.63 2.43
98 99 2.882137 CCGACCTTCTGGCAAACTAAAA 59.118 45.455 0.00 0.00 36.63 1.52
99 100 2.500229 CCGACCTTCTGGCAAACTAAA 58.500 47.619 0.00 0.00 36.63 1.85
100 101 1.271163 CCCGACCTTCTGGCAAACTAA 60.271 52.381 0.00 0.00 36.63 2.24
101 102 0.323629 CCCGACCTTCTGGCAAACTA 59.676 55.000 0.00 0.00 36.63 2.24
102 103 1.073199 CCCGACCTTCTGGCAAACT 59.927 57.895 0.00 0.00 36.63 2.66
103 104 2.626780 GCCCGACCTTCTGGCAAAC 61.627 63.158 3.93 0.00 44.81 2.93
104 105 2.282180 GCCCGACCTTCTGGCAAA 60.282 61.111 3.93 0.00 44.81 3.68
107 108 4.785453 CCAGCCCGACCTTCTGGC 62.785 72.222 0.60 0.60 45.65 4.85
108 109 4.101448 CCCAGCCCGACCTTCTGG 62.101 72.222 0.00 0.00 45.24 3.86
109 110 4.785453 GCCCAGCCCGACCTTCTG 62.785 72.222 0.00 0.00 0.00 3.02
111 112 3.860930 TTTGCCCAGCCCGACCTTC 62.861 63.158 0.00 0.00 0.00 3.46
112 113 3.868200 CTTTGCCCAGCCCGACCTT 62.868 63.158 0.00 0.00 0.00 3.50
113 114 4.351054 CTTTGCCCAGCCCGACCT 62.351 66.667 0.00 0.00 0.00 3.85
114 115 3.645268 ATCTTTGCCCAGCCCGACC 62.645 63.158 0.00 0.00 0.00 4.79
115 116 2.044946 ATCTTTGCCCAGCCCGAC 60.045 61.111 0.00 0.00 0.00 4.79
116 117 2.272146 GATCTTTGCCCAGCCCGA 59.728 61.111 0.00 0.00 0.00 5.14
117 118 2.830370 GGATCTTTGCCCAGCCCG 60.830 66.667 0.00 0.00 0.00 6.13
118 119 1.305213 TTGGATCTTTGCCCAGCCC 60.305 57.895 0.00 0.00 33.43 5.19
119 120 0.323725 TCTTGGATCTTTGCCCAGCC 60.324 55.000 0.00 0.00 33.43 4.85
120 121 1.772836 ATCTTGGATCTTTGCCCAGC 58.227 50.000 0.00 0.00 33.43 4.85
121 122 4.119442 CAAATCTTGGATCTTTGCCCAG 57.881 45.455 0.00 0.00 33.43 4.45
134 135 5.407387 CCAACATCTTTTGAGCCAAATCTTG 59.593 40.000 1.89 3.37 33.19 3.02
135 136 5.305128 TCCAACATCTTTTGAGCCAAATCTT 59.695 36.000 1.89 0.00 33.19 2.40
136 137 4.834496 TCCAACATCTTTTGAGCCAAATCT 59.166 37.500 1.89 0.00 33.19 2.40
137 138 5.138125 TCCAACATCTTTTGAGCCAAATC 57.862 39.130 1.89 0.00 33.19 2.17
138 139 4.590222 ACTCCAACATCTTTTGAGCCAAAT 59.410 37.500 1.89 0.00 33.19 2.32
139 140 3.960102 ACTCCAACATCTTTTGAGCCAAA 59.040 39.130 0.00 0.00 0.00 3.28
140 141 3.565307 ACTCCAACATCTTTTGAGCCAA 58.435 40.909 0.00 0.00 0.00 4.52
141 142 3.228188 ACTCCAACATCTTTTGAGCCA 57.772 42.857 0.00 0.00 0.00 4.75
142 143 3.319122 ACAACTCCAACATCTTTTGAGCC 59.681 43.478 0.00 0.00 0.00 4.70
143 144 4.574599 ACAACTCCAACATCTTTTGAGC 57.425 40.909 0.00 0.00 0.00 4.26
144 145 5.048713 GGGTACAACTCCAACATCTTTTGAG 60.049 44.000 0.00 0.00 0.00 3.02
145 146 4.825085 GGGTACAACTCCAACATCTTTTGA 59.175 41.667 0.00 0.00 0.00 2.69
146 147 4.582656 TGGGTACAACTCCAACATCTTTTG 59.417 41.667 0.00 0.00 0.00 2.44
147 148 4.798882 TGGGTACAACTCCAACATCTTTT 58.201 39.130 0.00 0.00 0.00 2.27
148 149 4.447138 TGGGTACAACTCCAACATCTTT 57.553 40.909 0.00 0.00 0.00 2.52
149 150 4.657814 ATGGGTACAACTCCAACATCTT 57.342 40.909 0.00 0.00 36.54 2.40
150 151 4.657814 AATGGGTACAACTCCAACATCT 57.342 40.909 0.00 0.00 36.54 2.90
151 152 5.469479 CAAAATGGGTACAACTCCAACATC 58.531 41.667 0.00 0.00 36.54 3.06
152 153 4.262420 GCAAAATGGGTACAACTCCAACAT 60.262 41.667 0.00 0.00 36.54 2.71
153 154 3.068873 GCAAAATGGGTACAACTCCAACA 59.931 43.478 0.00 0.00 36.54 3.33
154 155 3.068873 TGCAAAATGGGTACAACTCCAAC 59.931 43.478 0.00 0.00 36.54 3.77
155 156 3.300388 TGCAAAATGGGTACAACTCCAA 58.700 40.909 0.00 0.00 36.54 3.53
156 157 2.950781 TGCAAAATGGGTACAACTCCA 58.049 42.857 0.00 0.00 37.46 3.86
157 158 3.572255 TCTTGCAAAATGGGTACAACTCC 59.428 43.478 0.00 0.00 0.00 3.85
158 159 4.321230 CCTCTTGCAAAATGGGTACAACTC 60.321 45.833 0.00 0.00 0.00 3.01
159 160 3.573967 CCTCTTGCAAAATGGGTACAACT 59.426 43.478 0.00 0.00 0.00 3.16
160 161 3.306019 CCCTCTTGCAAAATGGGTACAAC 60.306 47.826 17.96 0.00 34.76 3.32
161 162 2.896685 CCCTCTTGCAAAATGGGTACAA 59.103 45.455 17.96 0.00 34.76 2.41
162 163 2.524306 CCCTCTTGCAAAATGGGTACA 58.476 47.619 17.96 0.00 34.76 2.90
163 164 1.204704 GCCCTCTTGCAAAATGGGTAC 59.795 52.381 23.55 10.88 39.66 3.34
164 165 1.555967 GCCCTCTTGCAAAATGGGTA 58.444 50.000 23.55 0.00 39.66 3.69
165 166 1.535204 CGCCCTCTTGCAAAATGGGT 61.535 55.000 23.55 0.00 39.66 4.51
166 167 1.216178 CGCCCTCTTGCAAAATGGG 59.784 57.895 20.54 20.54 40.23 4.00
167 168 1.446618 GCGCCCTCTTGCAAAATGG 60.447 57.895 0.00 1.85 0.00 3.16
168 169 1.010419 GTGCGCCCTCTTGCAAAATG 61.010 55.000 4.18 0.00 43.75 2.32
169 170 1.290009 GTGCGCCCTCTTGCAAAAT 59.710 52.632 4.18 0.00 43.75 1.82
170 171 1.462731 ATGTGCGCCCTCTTGCAAAA 61.463 50.000 4.18 0.00 43.75 2.44
171 172 1.865788 GATGTGCGCCCTCTTGCAAA 61.866 55.000 4.18 0.00 43.75 3.68
172 173 2.282391 ATGTGCGCCCTCTTGCAA 60.282 55.556 4.18 0.00 43.75 4.08
173 174 2.747460 GATGTGCGCCCTCTTGCA 60.747 61.111 4.18 0.00 39.13 4.08
174 175 0.815213 TATGATGTGCGCCCTCTTGC 60.815 55.000 4.18 0.00 0.00 4.01
175 176 1.667236 TTATGATGTGCGCCCTCTTG 58.333 50.000 4.18 0.00 0.00 3.02
176 177 2.418368 TTTATGATGTGCGCCCTCTT 57.582 45.000 4.18 0.00 0.00 2.85
177 178 2.645838 ATTTATGATGTGCGCCCTCT 57.354 45.000 4.18 0.00 0.00 3.69
178 179 2.880890 AGAATTTATGATGTGCGCCCTC 59.119 45.455 4.18 0.00 0.00 4.30
179 180 2.880890 GAGAATTTATGATGTGCGCCCT 59.119 45.455 4.18 0.00 0.00 5.19
180 181 2.030805 GGAGAATTTATGATGTGCGCCC 60.031 50.000 4.18 0.00 0.00 6.13
181 182 2.349817 CGGAGAATTTATGATGTGCGCC 60.350 50.000 4.18 0.00 0.00 6.53
182 183 2.543848 TCGGAGAATTTATGATGTGCGC 59.456 45.455 0.00 0.00 0.00 6.09
183 184 4.794248 TTCGGAGAATTTATGATGTGCG 57.206 40.909 0.00 0.00 45.90 5.34
184 185 6.064846 ACATTCGGAGAATTTATGATGTGC 57.935 37.500 0.00 0.00 45.90 4.57
185 186 6.484643 AGGACATTCGGAGAATTTATGATGTG 59.515 38.462 0.00 0.00 45.90 3.21
186 187 6.595682 AGGACATTCGGAGAATTTATGATGT 58.404 36.000 0.00 0.00 45.90 3.06
187 188 7.227314 TCAAGGACATTCGGAGAATTTATGATG 59.773 37.037 0.00 0.00 45.90 3.07
188 189 7.227512 GTCAAGGACATTCGGAGAATTTATGAT 59.772 37.037 0.00 0.00 35.22 2.45
189 190 6.538742 GTCAAGGACATTCGGAGAATTTATGA 59.461 38.462 0.00 0.00 35.22 2.15
190 191 6.238484 GGTCAAGGACATTCGGAGAATTTATG 60.238 42.308 0.00 0.00 36.40 1.90
191 192 5.823045 GGTCAAGGACATTCGGAGAATTTAT 59.177 40.000 0.00 0.00 36.40 1.40
192 193 5.183228 GGTCAAGGACATTCGGAGAATTTA 58.817 41.667 0.00 0.00 36.40 1.40
193 194 4.010349 GGTCAAGGACATTCGGAGAATTT 58.990 43.478 0.00 0.00 36.40 1.82
194 195 3.610911 GGTCAAGGACATTCGGAGAATT 58.389 45.455 0.00 0.00 36.40 2.17
195 196 2.092914 GGGTCAAGGACATTCGGAGAAT 60.093 50.000 0.00 0.00 36.40 2.40
196 197 1.278127 GGGTCAAGGACATTCGGAGAA 59.722 52.381 0.00 0.00 36.40 2.87
197 198 0.902531 GGGTCAAGGACATTCGGAGA 59.097 55.000 0.00 0.00 33.68 3.71
198 199 0.613260 TGGGTCAAGGACATTCGGAG 59.387 55.000 0.00 0.00 33.68 4.63
199 200 1.209504 GATGGGTCAAGGACATTCGGA 59.790 52.381 0.00 0.00 33.68 4.55
200 201 1.210478 AGATGGGTCAAGGACATTCGG 59.790 52.381 0.00 0.00 33.68 4.30
201 202 2.698855 AGATGGGTCAAGGACATTCG 57.301 50.000 0.00 0.00 33.68 3.34
202 203 4.332819 CGTTAAGATGGGTCAAGGACATTC 59.667 45.833 0.00 0.00 33.68 2.67
203 204 4.261801 CGTTAAGATGGGTCAAGGACATT 58.738 43.478 0.00 0.00 33.68 2.71
204 205 3.370527 CCGTTAAGATGGGTCAAGGACAT 60.371 47.826 0.00 0.00 33.68 3.06
205 206 2.027561 CCGTTAAGATGGGTCAAGGACA 60.028 50.000 0.00 0.00 33.68 4.02
206 207 2.629051 CCGTTAAGATGGGTCAAGGAC 58.371 52.381 0.00 0.00 0.00 3.85
207 208 1.557832 CCCGTTAAGATGGGTCAAGGA 59.442 52.381 0.10 0.00 45.68 3.36
208 209 2.038387 CCCGTTAAGATGGGTCAAGG 57.962 55.000 0.10 0.00 45.68 3.61
215 216 6.503589 TTTTTATCACACCCGTTAAGATGG 57.496 37.500 0.00 0.00 0.00 3.51
250 251 9.593565 ACTCTCTCCTGACATATTGATATAACA 57.406 33.333 0.00 0.00 0.00 2.41
251 252 9.853555 CACTCTCTCCTGACATATTGATATAAC 57.146 37.037 0.00 0.00 0.00 1.89
252 253 9.593565 ACACTCTCTCCTGACATATTGATATAA 57.406 33.333 0.00 0.00 0.00 0.98
253 254 9.593565 AACACTCTCTCCTGACATATTGATATA 57.406 33.333 0.00 0.00 0.00 0.86
254 255 8.489676 AACACTCTCTCCTGACATATTGATAT 57.510 34.615 0.00 0.00 0.00 1.63
255 256 7.014711 GGAACACTCTCTCCTGACATATTGATA 59.985 40.741 0.00 0.00 0.00 2.15
256 257 6.183360 GGAACACTCTCTCCTGACATATTGAT 60.183 42.308 0.00 0.00 0.00 2.57
257 258 5.127845 GGAACACTCTCTCCTGACATATTGA 59.872 44.000 0.00 0.00 0.00 2.57
258 259 5.105187 TGGAACACTCTCTCCTGACATATTG 60.105 44.000 0.00 0.00 32.51 1.90
259 260 5.026121 TGGAACACTCTCTCCTGACATATT 58.974 41.667 0.00 0.00 32.51 1.28
260 261 4.614475 TGGAACACTCTCTCCTGACATAT 58.386 43.478 0.00 0.00 32.51 1.78
261 262 4.047627 TGGAACACTCTCTCCTGACATA 57.952 45.455 0.00 0.00 32.51 2.29
262 263 2.894731 TGGAACACTCTCTCCTGACAT 58.105 47.619 0.00 0.00 32.51 3.06
263 264 2.381752 TGGAACACTCTCTCCTGACA 57.618 50.000 0.00 0.00 32.51 3.58
264 265 3.753294 TTTGGAACACTCTCTCCTGAC 57.247 47.619 0.00 0.00 39.29 3.51
265 266 4.771114 TTTTTGGAACACTCTCTCCTGA 57.229 40.909 0.00 0.00 39.29 3.86
285 286 2.414161 GCAGCGGCGTAATTCTCTTTTT 60.414 45.455 9.37 0.00 0.00 1.94
286 287 1.130561 GCAGCGGCGTAATTCTCTTTT 59.869 47.619 9.37 0.00 0.00 2.27
287 288 0.727398 GCAGCGGCGTAATTCTCTTT 59.273 50.000 9.37 0.00 0.00 2.52
288 289 1.090052 GGCAGCGGCGTAATTCTCTT 61.090 55.000 9.37 0.00 42.47 2.85
289 290 1.521681 GGCAGCGGCGTAATTCTCT 60.522 57.895 9.37 0.00 42.47 3.10
290 291 1.090052 AAGGCAGCGGCGTAATTCTC 61.090 55.000 9.37 0.00 42.47 2.87
291 292 1.078426 AAGGCAGCGGCGTAATTCT 60.078 52.632 9.37 0.00 42.47 2.40
292 293 1.090052 AGAAGGCAGCGGCGTAATTC 61.090 55.000 9.37 5.64 42.47 2.17
293 294 0.676782 AAGAAGGCAGCGGCGTAATT 60.677 50.000 9.37 0.01 42.47 1.40
294 295 1.078426 AAGAAGGCAGCGGCGTAAT 60.078 52.632 9.37 0.00 42.47 1.89
295 296 1.740296 GAAGAAGGCAGCGGCGTAA 60.740 57.895 9.37 0.00 42.47 3.18
296 297 2.125673 GAAGAAGGCAGCGGCGTA 60.126 61.111 9.37 0.00 42.47 4.42
297 298 4.314440 TGAAGAAGGCAGCGGCGT 62.314 61.111 9.37 0.00 42.47 5.68
298 299 2.835701 TAGTGAAGAAGGCAGCGGCG 62.836 60.000 0.51 0.51 42.47 6.46
299 300 0.462759 ATAGTGAAGAAGGCAGCGGC 60.463 55.000 0.00 0.00 40.13 6.53
300 301 1.293924 CATAGTGAAGAAGGCAGCGG 58.706 55.000 0.00 0.00 0.00 5.52
301 302 0.654683 GCATAGTGAAGAAGGCAGCG 59.345 55.000 0.00 0.00 0.00 5.18
302 303 1.742761 TGCATAGTGAAGAAGGCAGC 58.257 50.000 0.00 0.00 0.00 5.25
303 304 4.771590 TTTTGCATAGTGAAGAAGGCAG 57.228 40.909 0.00 0.00 32.31 4.85
325 326 9.880157 CATTTCTCATTCCAAATCACCTAATTT 57.120 29.630 0.00 0.00 0.00 1.82
326 327 7.983484 GCATTTCTCATTCCAAATCACCTAATT 59.017 33.333 0.00 0.00 0.00 1.40
327 328 7.495055 GCATTTCTCATTCCAAATCACCTAAT 58.505 34.615 0.00 0.00 0.00 1.73
328 329 6.404623 CGCATTTCTCATTCCAAATCACCTAA 60.405 38.462 0.00 0.00 0.00 2.69
329 330 5.066375 CGCATTTCTCATTCCAAATCACCTA 59.934 40.000 0.00 0.00 0.00 3.08
330 331 4.142315 CGCATTTCTCATTCCAAATCACCT 60.142 41.667 0.00 0.00 0.00 4.00
331 332 4.107622 CGCATTTCTCATTCCAAATCACC 58.892 43.478 0.00 0.00 0.00 4.02
332 333 4.985413 TCGCATTTCTCATTCCAAATCAC 58.015 39.130 0.00 0.00 0.00 3.06
333 334 4.701651 ACTCGCATTTCTCATTCCAAATCA 59.298 37.500 0.00 0.00 0.00 2.57
334 335 5.032863 CACTCGCATTTCTCATTCCAAATC 58.967 41.667 0.00 0.00 0.00 2.17
335 336 4.460382 ACACTCGCATTTCTCATTCCAAAT 59.540 37.500 0.00 0.00 0.00 2.32
336 337 3.820467 ACACTCGCATTTCTCATTCCAAA 59.180 39.130 0.00 0.00 0.00 3.28
337 338 3.411446 ACACTCGCATTTCTCATTCCAA 58.589 40.909 0.00 0.00 0.00 3.53
338 339 3.057969 ACACTCGCATTTCTCATTCCA 57.942 42.857 0.00 0.00 0.00 3.53
339 340 3.181506 GGAACACTCGCATTTCTCATTCC 60.182 47.826 0.00 0.00 0.00 3.01
340 341 3.436704 TGGAACACTCGCATTTCTCATTC 59.563 43.478 0.00 0.00 0.00 2.67
341 342 3.411446 TGGAACACTCGCATTTCTCATT 58.589 40.909 0.00 0.00 0.00 2.57
342 343 3.057969 TGGAACACTCGCATTTCTCAT 57.942 42.857 0.00 0.00 0.00 2.90
343 344 2.542020 TGGAACACTCGCATTTCTCA 57.458 45.000 0.00 0.00 0.00 3.27
344 345 3.896648 TTTGGAACACTCGCATTTCTC 57.103 42.857 0.00 0.00 39.29 2.87
345 346 4.647424 TTTTTGGAACACTCGCATTTCT 57.353 36.364 0.00 0.00 39.29 2.52
364 365 7.494922 AGGAAAGTTGGTGGCATATATTTTT 57.505 32.000 0.00 0.00 0.00 1.94
365 366 8.602472 TTAGGAAAGTTGGTGGCATATATTTT 57.398 30.769 0.00 0.00 0.00 1.82
366 367 8.641541 CATTAGGAAAGTTGGTGGCATATATTT 58.358 33.333 0.00 0.00 0.00 1.40
367 368 7.784550 ACATTAGGAAAGTTGGTGGCATATATT 59.215 33.333 0.00 0.00 0.00 1.28
368 369 7.231317 CACATTAGGAAAGTTGGTGGCATATAT 59.769 37.037 0.00 0.00 0.00 0.86
369 370 6.545666 CACATTAGGAAAGTTGGTGGCATATA 59.454 38.462 0.00 0.00 0.00 0.86
370 371 5.360714 CACATTAGGAAAGTTGGTGGCATAT 59.639 40.000 0.00 0.00 0.00 1.78
371 372 4.704540 CACATTAGGAAAGTTGGTGGCATA 59.295 41.667 0.00 0.00 0.00 3.14
372 373 3.511146 CACATTAGGAAAGTTGGTGGCAT 59.489 43.478 0.00 0.00 0.00 4.40
373 374 2.890311 CACATTAGGAAAGTTGGTGGCA 59.110 45.455 0.00 0.00 0.00 4.92
374 375 2.352715 GCACATTAGGAAAGTTGGTGGC 60.353 50.000 0.00 0.00 0.00 5.01
375 376 2.890311 TGCACATTAGGAAAGTTGGTGG 59.110 45.455 0.00 0.00 0.00 4.61
376 377 4.218200 TCATGCACATTAGGAAAGTTGGTG 59.782 41.667 0.00 0.00 0.00 4.17
377 378 4.406456 TCATGCACATTAGGAAAGTTGGT 58.594 39.130 0.00 0.00 0.00 3.67
378 379 5.389859 TTCATGCACATTAGGAAAGTTGG 57.610 39.130 0.00 0.00 0.00 3.77
379 380 6.680810 TCTTTCATGCACATTAGGAAAGTTG 58.319 36.000 15.74 0.00 42.94 3.16
380 381 6.899393 TCTTTCATGCACATTAGGAAAGTT 57.101 33.333 15.74 0.00 42.94 2.66
381 382 6.899393 TTCTTTCATGCACATTAGGAAAGT 57.101 33.333 15.74 0.00 42.94 2.66
382 383 6.306356 CGTTTCTTTCATGCACATTAGGAAAG 59.694 38.462 12.39 12.39 43.47 2.62
383 384 6.016693 TCGTTTCTTTCATGCACATTAGGAAA 60.017 34.615 0.00 0.00 0.00 3.13
384 385 5.471797 TCGTTTCTTTCATGCACATTAGGAA 59.528 36.000 0.00 0.00 0.00 3.36
385 386 5.000591 TCGTTTCTTTCATGCACATTAGGA 58.999 37.500 0.00 0.00 0.00 2.94
386 387 5.088739 GTCGTTTCTTTCATGCACATTAGG 58.911 41.667 0.00 0.00 0.00 2.69
387 388 5.931532 AGTCGTTTCTTTCATGCACATTAG 58.068 37.500 0.00 0.00 0.00 1.73
388 389 5.940192 AGTCGTTTCTTTCATGCACATTA 57.060 34.783 0.00 0.00 0.00 1.90
389 390 4.836125 AGTCGTTTCTTTCATGCACATT 57.164 36.364 0.00 0.00 0.00 2.71
390 391 4.275689 TCAAGTCGTTTCTTTCATGCACAT 59.724 37.500 0.00 0.00 0.00 3.21
391 392 3.625313 TCAAGTCGTTTCTTTCATGCACA 59.375 39.130 0.00 0.00 0.00 4.57
392 393 4.209452 TCAAGTCGTTTCTTTCATGCAC 57.791 40.909 0.00 0.00 0.00 4.57
393 394 4.786507 CATCAAGTCGTTTCTTTCATGCA 58.213 39.130 0.00 0.00 0.00 3.96
394 395 3.605486 GCATCAAGTCGTTTCTTTCATGC 59.395 43.478 0.00 11.48 0.00 4.06
395 396 4.786507 TGCATCAAGTCGTTTCTTTCATG 58.213 39.130 0.00 0.00 0.00 3.07
396 397 5.396484 CATGCATCAAGTCGTTTCTTTCAT 58.604 37.500 0.00 0.00 0.00 2.57
397 398 4.320421 CCATGCATCAAGTCGTTTCTTTCA 60.320 41.667 0.00 0.00 0.00 2.69
398 399 4.161333 CCATGCATCAAGTCGTTTCTTTC 58.839 43.478 0.00 0.00 0.00 2.62
399 400 3.057315 CCCATGCATCAAGTCGTTTCTTT 60.057 43.478 0.00 0.00 0.00 2.52
400 401 2.489329 CCCATGCATCAAGTCGTTTCTT 59.511 45.455 0.00 0.00 0.00 2.52
401 402 2.086869 CCCATGCATCAAGTCGTTTCT 58.913 47.619 0.00 0.00 0.00 2.52
402 403 1.812571 ACCCATGCATCAAGTCGTTTC 59.187 47.619 0.00 0.00 0.00 2.78
403 404 1.541147 CACCCATGCATCAAGTCGTTT 59.459 47.619 0.00 0.00 0.00 3.60
404 405 1.167851 CACCCATGCATCAAGTCGTT 58.832 50.000 0.00 0.00 0.00 3.85
405 406 2.858622 CACCCATGCATCAAGTCGT 58.141 52.632 0.00 0.00 0.00 4.34
416 417 3.896133 GGCGCAGATGCACCCATG 61.896 66.667 10.83 0.00 42.21 3.66
417 418 4.119363 AGGCGCAGATGCACCCAT 62.119 61.111 10.83 0.00 43.98 4.00
431 432 2.536997 ATTACACCTCACGCCCAGGC 62.537 60.000 0.00 0.00 33.84 4.85
432 433 0.828022 TATTACACCTCACGCCCAGG 59.172 55.000 0.00 0.00 37.03 4.45
433 434 1.480954 AGTATTACACCTCACGCCCAG 59.519 52.381 0.00 0.00 0.00 4.45
434 435 1.479323 GAGTATTACACCTCACGCCCA 59.521 52.381 0.00 0.00 0.00 5.36
435 436 1.202498 GGAGTATTACACCTCACGCCC 60.202 57.143 3.30 0.00 0.00 6.13
436 437 1.202498 GGGAGTATTACACCTCACGCC 60.202 57.143 9.72 0.00 0.00 5.68
437 438 1.755380 AGGGAGTATTACACCTCACGC 59.245 52.381 9.72 0.00 0.00 5.34
438 439 3.712091 GAGGGAGTATTACACCTCACG 57.288 52.381 22.59 0.00 46.81 4.35
441 442 5.130477 TGAAATGGAGGGAGTATTACACCTC 59.870 44.000 20.76 20.76 46.85 3.85
442 443 5.036916 TGAAATGGAGGGAGTATTACACCT 58.963 41.667 9.72 9.42 35.67 4.00
443 444 5.367945 TGAAATGGAGGGAGTATTACACC 57.632 43.478 1.95 1.95 0.00 4.16
444 445 7.881775 AAATGAAATGGAGGGAGTATTACAC 57.118 36.000 0.00 0.00 0.00 2.90
445 446 9.627123 CTAAAATGAAATGGAGGGAGTATTACA 57.373 33.333 0.00 0.00 0.00 2.41
446 447 9.628500 ACTAAAATGAAATGGAGGGAGTATTAC 57.372 33.333 0.00 0.00 0.00 1.89
448 449 9.547279 AAACTAAAATGAAATGGAGGGAGTATT 57.453 29.630 0.00 0.00 0.00 1.89
449 450 8.971073 CAAACTAAAATGAAATGGAGGGAGTAT 58.029 33.333 0.00 0.00 0.00 2.12
450 451 7.093945 GCAAACTAAAATGAAATGGAGGGAGTA 60.094 37.037 0.00 0.00 0.00 2.59
451 452 6.295292 GCAAACTAAAATGAAATGGAGGGAGT 60.295 38.462 0.00 0.00 0.00 3.85
452 453 6.101997 GCAAACTAAAATGAAATGGAGGGAG 58.898 40.000 0.00 0.00 0.00 4.30
453 454 5.541868 TGCAAACTAAAATGAAATGGAGGGA 59.458 36.000 0.00 0.00 0.00 4.20
454 455 5.792741 TGCAAACTAAAATGAAATGGAGGG 58.207 37.500 0.00 0.00 0.00 4.30
470 471 8.806146 ACTTTGACCAAATCTTATATGCAAACT 58.194 29.630 0.00 0.00 0.00 2.66
471 472 8.986477 ACTTTGACCAAATCTTATATGCAAAC 57.014 30.769 0.00 0.00 0.00 2.93
472 473 8.801299 TGACTTTGACCAAATCTTATATGCAAA 58.199 29.630 0.00 0.00 0.00 3.68
473 474 8.347004 TGACTTTGACCAAATCTTATATGCAA 57.653 30.769 0.00 0.00 0.00 4.08
474 475 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
475 476 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
499 500 9.392259 ACTTAGCTAGTCAAACTTTACAAAGTT 57.608 29.630 13.09 13.09 46.01 2.66
500 501 8.959705 ACTTAGCTAGTCAAACTTTACAAAGT 57.040 30.769 1.47 1.47 41.22 2.66
647 648 6.609237 TGATCAGAGTCAAACTTCACAAAG 57.391 37.500 0.00 0.00 38.54 2.77
648 649 7.389803 TTTGATCAGAGTCAAACTTCACAAA 57.610 32.000 0.00 0.00 41.70 2.83
664 665 9.956720 GGTCCAAAACATATAAGATTTGATCAG 57.043 33.333 11.04 0.00 34.39 2.90
665 666 8.620416 CGGTCCAAAACATATAAGATTTGATCA 58.380 33.333 11.04 0.00 34.39 2.92
666 667 8.836413 TCGGTCCAAAACATATAAGATTTGATC 58.164 33.333 11.04 5.10 34.39 2.92
667 668 8.746052 TCGGTCCAAAACATATAAGATTTGAT 57.254 30.769 11.04 0.00 34.39 2.57
668 669 8.455682 GTTCGGTCCAAAACATATAAGATTTGA 58.544 33.333 11.04 0.00 34.39 2.69
669 670 8.240682 TGTTCGGTCCAAAACATATAAGATTTG 58.759 33.333 4.29 4.29 32.88 2.32
670 671 8.241367 GTGTTCGGTCCAAAACATATAAGATTT 58.759 33.333 9.41 0.00 37.67 2.17
671 672 7.148137 GGTGTTCGGTCCAAAACATATAAGATT 60.148 37.037 9.41 0.00 37.67 2.40
672 673 6.317893 GGTGTTCGGTCCAAAACATATAAGAT 59.682 38.462 9.41 0.00 37.67 2.40
673 674 5.644636 GGTGTTCGGTCCAAAACATATAAGA 59.355 40.000 9.41 0.00 37.67 2.10
674 675 5.163693 GGGTGTTCGGTCCAAAACATATAAG 60.164 44.000 9.41 0.00 37.67 1.73
675 676 4.701171 GGGTGTTCGGTCCAAAACATATAA 59.299 41.667 9.41 0.00 37.67 0.98
676 677 4.263435 GGGTGTTCGGTCCAAAACATATA 58.737 43.478 9.41 0.00 37.67 0.86
677 678 3.086282 GGGTGTTCGGTCCAAAACATAT 58.914 45.455 9.41 0.00 37.67 1.78
678 679 2.506444 GGGTGTTCGGTCCAAAACATA 58.494 47.619 9.41 0.00 37.67 2.29
679 680 1.324383 GGGTGTTCGGTCCAAAACAT 58.676 50.000 9.41 0.00 37.67 2.71
680 681 0.752376 GGGGTGTTCGGTCCAAAACA 60.752 55.000 3.28 3.28 33.18 2.83
681 682 1.457823 GGGGGTGTTCGGTCCAAAAC 61.458 60.000 0.00 0.00 0.00 2.43
682 683 1.152715 GGGGGTGTTCGGTCCAAAA 60.153 57.895 0.00 0.00 0.00 2.44
683 684 1.647334 AAGGGGGTGTTCGGTCCAAA 61.647 55.000 0.00 0.00 0.00 3.28
684 685 2.079911 AAGGGGGTGTTCGGTCCAA 61.080 57.895 0.00 0.00 0.00 3.53
685 686 2.448931 AAGGGGGTGTTCGGTCCA 60.449 61.111 0.00 0.00 0.00 4.02
686 687 2.033602 CAAGGGGGTGTTCGGTCC 59.966 66.667 0.00 0.00 0.00 4.46
687 688 1.302271 GACAAGGGGGTGTTCGGTC 60.302 63.158 0.00 0.00 0.00 4.79
688 689 1.350310 AAGACAAGGGGGTGTTCGGT 61.350 55.000 0.00 0.00 0.00 4.69
689 690 0.605589 GAAGACAAGGGGGTGTTCGG 60.606 60.000 0.00 0.00 32.41 4.30
690 691 0.396811 AGAAGACAAGGGGGTGTTCG 59.603 55.000 0.00 0.00 43.56 3.95
691 692 3.409570 GTTAGAAGACAAGGGGGTGTTC 58.590 50.000 0.00 0.00 40.32 3.18
692 693 2.107726 GGTTAGAAGACAAGGGGGTGTT 59.892 50.000 0.00 0.00 0.00 3.32
693 694 1.703513 GGTTAGAAGACAAGGGGGTGT 59.296 52.381 0.00 0.00 0.00 4.16
694 695 1.702957 TGGTTAGAAGACAAGGGGGTG 59.297 52.381 0.00 0.00 0.00 4.61
695 696 1.703513 GTGGTTAGAAGACAAGGGGGT 59.296 52.381 0.00 0.00 0.00 4.95
696 697 1.004394 GGTGGTTAGAAGACAAGGGGG 59.996 57.143 0.00 0.00 0.00 5.40
697 698 1.004394 GGGTGGTTAGAAGACAAGGGG 59.996 57.143 0.00 0.00 0.00 4.79
698 699 1.004394 GGGGTGGTTAGAAGACAAGGG 59.996 57.143 0.00 0.00 0.00 3.95
699 700 1.985895 AGGGGTGGTTAGAAGACAAGG 59.014 52.381 0.00 0.00 0.00 3.61
700 701 4.903045 TTAGGGGTGGTTAGAAGACAAG 57.097 45.455 0.00 0.00 0.00 3.16
701 702 5.649970 TTTTAGGGGTGGTTAGAAGACAA 57.350 39.130 0.00 0.00 0.00 3.18
702 703 5.649970 TTTTTAGGGGTGGTTAGAAGACA 57.350 39.130 0.00 0.00 0.00 3.41
723 724 4.647853 GGGTGGTTAGAAGACAAGGTTTTT 59.352 41.667 0.00 0.00 0.00 1.94
724 725 4.212716 GGGTGGTTAGAAGACAAGGTTTT 58.787 43.478 0.00 0.00 0.00 2.43
725 726 3.436035 GGGGTGGTTAGAAGACAAGGTTT 60.436 47.826 0.00 0.00 0.00 3.27
726 727 2.107726 GGGGTGGTTAGAAGACAAGGTT 59.892 50.000 0.00 0.00 0.00 3.50
727 728 1.703513 GGGGTGGTTAGAAGACAAGGT 59.296 52.381 0.00 0.00 0.00 3.50
829 834 2.759795 GGTTGAGGGGAAGCAGCT 59.240 61.111 0.00 0.00 0.00 4.24
852 857 3.064987 CTACTGGGCGTGAGGACGG 62.065 68.421 0.00 0.00 46.20 4.79
855 860 3.075005 GGCTACTGGGCGTGAGGA 61.075 66.667 0.00 0.00 0.00 3.71
904 909 2.126307 CGGACGTGCACAGGAGAG 60.126 66.667 18.64 1.21 0.00 3.20
965 979 3.068691 CGTCCTTCCGGCAGAGGA 61.069 66.667 14.69 14.69 38.79 3.71
968 982 3.744719 CGTCGTCCTTCCGGCAGA 61.745 66.667 1.35 0.00 31.49 4.26
1089 1115 3.258228 ATTGTGGCTGCCGCTCAGA 62.258 57.895 30.17 15.32 45.72 3.27
1163 1189 1.822371 AGGAGGAAGAGAAGAAGCGTC 59.178 52.381 0.00 0.00 0.00 5.19
1164 1190 1.822371 GAGGAGGAAGAGAAGAAGCGT 59.178 52.381 0.00 0.00 0.00 5.07
1284 1313 2.107366 TCCTTGTAGATGCCGATGACA 58.893 47.619 0.00 0.00 0.00 3.58
1303 1332 4.373116 TTGGCAGTCGGCGAGGTC 62.373 66.667 11.20 8.16 46.16 3.85
1353 1382 1.666872 GCCTTTGTACACGGTCGCT 60.667 57.895 11.04 0.00 0.00 4.93
1355 1384 1.897398 GCAGCCTTTGTACACGGTCG 61.897 60.000 11.04 5.08 0.00 4.79
1413 1442 4.778213 ATACAGAGCATTCTTTAGCCCA 57.222 40.909 0.00 0.00 0.00 5.36
1419 1448 6.237942 CGTTGATCGAATACAGAGCATTCTTT 60.238 38.462 0.00 0.00 42.86 2.52
1437 1466 4.991760 GCATCTGCTGCGTTGATC 57.008 55.556 0.00 0.00 41.97 2.92
1500 1529 1.612463 GAGGATGCAATTCCATCAGGC 59.388 52.381 11.43 0.00 42.63 4.85
1516 1545 0.250727 CCGGTTTCCAAAGCAGAGGA 60.251 55.000 0.00 0.00 36.24 3.71
1533 1562 1.672881 GGATGCTTCTTTGATGGTCCG 59.327 52.381 0.00 0.00 0.00 4.79
1534 1563 2.027385 GGGATGCTTCTTTGATGGTCC 58.973 52.381 0.00 0.00 0.00 4.46
1605 1646 0.592637 TGCAAGCACCATCAAACTCG 59.407 50.000 0.00 0.00 0.00 4.18
1608 1649 2.137523 CCTTTGCAAGCACCATCAAAC 58.862 47.619 0.00 0.00 0.00 2.93
1647 1688 1.227527 CCTGATTATCACGCCGGCA 60.228 57.895 28.98 7.49 0.00 5.69
1662 1703 4.570663 GATCCGTCCGGTCGCCTG 62.571 72.222 15.94 2.53 36.47 4.85
1692 1733 1.606885 TACCCAAACCCTCGCGTAGG 61.607 60.000 5.77 11.79 46.09 3.18
1716 1757 4.821260 TGATATTCAGCGGCATTACATGTT 59.179 37.500 2.30 0.00 0.00 2.71
1719 1760 3.433274 CGTGATATTCAGCGGCATTACAT 59.567 43.478 1.45 0.00 0.00 2.29
1725 1766 0.532640 ATGCGTGATATTCAGCGGCA 60.533 50.000 1.45 0.00 0.00 5.69
1739 1780 3.210012 AACCCCAGGAGCAATGCGT 62.210 57.895 0.00 0.00 0.00 5.24
1761 1802 4.199310 TGAATCCCTTGTTAGCAGCATAC 58.801 43.478 0.00 0.00 0.00 2.39
1770 1811 4.925054 CGAACGTACTTGAATCCCTTGTTA 59.075 41.667 0.00 0.00 0.00 2.41
1788 1829 1.626654 AATCGCCTTGAGCACGAACG 61.627 55.000 0.00 0.00 44.04 3.95
1791 1832 0.815095 TAGAATCGCCTTGAGCACGA 59.185 50.000 0.00 0.00 44.04 4.35
1866 1907 3.565482 CCTTAGCTTTCTTGCACAAGTCA 59.435 43.478 10.05 0.00 39.38 3.41
1917 1958 4.789012 TTTCCTCAAAGCATGGTTGATC 57.211 40.909 11.56 0.00 34.59 2.92
2008 2049 2.887151 AGCTAGCATGGGAAGTTTGT 57.113 45.000 18.83 0.00 0.00 2.83
2204 2245 4.098044 TCCTCAGCTTACACTTCTTATCCG 59.902 45.833 0.00 0.00 0.00 4.18
2217 2258 3.439857 AGGCACAATTTCCTCAGCTTA 57.560 42.857 0.00 0.00 0.00 3.09
2290 2331 9.525409 AAACGTTGTATGTAGTCTCCATAATAC 57.475 33.333 0.00 0.00 0.00 1.89
2298 2339 9.947669 ATAGTATCAAACGTTGTATGTAGTCTC 57.052 33.333 0.00 0.00 0.00 3.36
2322 2363 8.669055 TTAGTTTACAGAGGGAGTACCAAATA 57.331 34.615 0.00 0.00 43.89 1.40
2439 2485 3.633986 AGCAGTAGCATATTTCCCTTTGC 59.366 43.478 0.00 0.00 45.49 3.68
2456 2502 2.991250 AGACGGATAAATTGCAGCAGT 58.009 42.857 0.00 0.00 0.00 4.40
2478 2524 0.383124 GCGACTCTGAACAACGTTGC 60.383 55.000 27.61 13.21 0.00 4.17
2523 2569 1.946745 AAGGCGCTCTTAGAGATTGC 58.053 50.000 14.14 12.47 33.14 3.56
2524 2570 5.755375 TGAATAAAGGCGCTCTTAGAGATTG 59.245 40.000 14.14 2.94 34.78 2.67
2527 2573 5.339008 TTGAATAAAGGCGCTCTTAGAGA 57.661 39.130 14.14 0.00 34.78 3.10
2711 2758 8.084073 TCTGAAAGCATAGAAAGAAACAAATGG 58.916 33.333 0.00 0.00 0.00 3.16
2775 2822 4.018597 AGAGTGCCAAATCCTCTTGAATCT 60.019 41.667 0.00 0.00 31.64 2.40
2808 2855 7.743520 TTCTCAAACGTGTAAATTGGAAAAC 57.256 32.000 0.00 0.00 0.00 2.43
2810 2857 8.934507 AAATTCTCAAACGTGTAAATTGGAAA 57.065 26.923 0.00 0.00 0.00 3.13
2893 2940 4.917906 AGGTTTTTCCTCATAGACTGCT 57.082 40.909 0.00 0.00 44.42 4.24
2894 2941 5.119694 CCTAGGTTTTTCCTCATAGACTGC 58.880 45.833 0.00 0.00 44.42 4.40
2895 2942 5.119694 GCCTAGGTTTTTCCTCATAGACTG 58.880 45.833 11.31 0.00 44.42 3.51
2896 2943 4.141914 CGCCTAGGTTTTTCCTCATAGACT 60.142 45.833 11.31 0.00 44.42 3.24
2897 2944 4.120589 CGCCTAGGTTTTTCCTCATAGAC 58.879 47.826 11.31 0.00 44.42 2.59
2898 2945 4.028131 TCGCCTAGGTTTTTCCTCATAGA 58.972 43.478 11.31 0.00 44.42 1.98
2899 2946 4.120589 GTCGCCTAGGTTTTTCCTCATAG 58.879 47.826 11.31 0.00 44.42 2.23
2900 2947 3.773119 AGTCGCCTAGGTTTTTCCTCATA 59.227 43.478 11.31 0.00 44.42 2.15
2901 2948 2.572104 AGTCGCCTAGGTTTTTCCTCAT 59.428 45.455 11.31 0.00 44.42 2.90
2914 2961 1.284715 CACACACACGAGTCGCCTA 59.715 57.895 13.59 0.00 0.00 3.93
2915 2962 2.027605 CACACACACGAGTCGCCT 59.972 61.111 13.59 0.00 0.00 5.52
2937 2984 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2943 2992 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2949 2998 1.435408 CGATGCCACACACACACACA 61.435 55.000 0.00 0.00 0.00 3.72
2953 3002 0.879839 CACTCGATGCCACACACACA 60.880 55.000 0.00 0.00 0.00 3.72
2956 3005 0.723414 CATCACTCGATGCCACACAC 59.277 55.000 0.00 0.00 42.54 3.82
2957 3006 3.142124 CATCACTCGATGCCACACA 57.858 52.632 0.00 0.00 42.54 3.72
2959 3008 5.671815 TGTGTTCATCACTCGATGCCACA 62.672 47.826 16.76 16.76 46.94 4.17
2965 3014 6.988580 ACATATGATTGTGTTCATCACTCGAT 59.011 34.615 10.38 0.00 46.27 3.59
2966 3015 6.340522 ACATATGATTGTGTTCATCACTCGA 58.659 36.000 10.38 0.00 46.27 4.04
2967 3016 6.594284 ACATATGATTGTGTTCATCACTCG 57.406 37.500 10.38 0.00 46.27 4.18
2996 3045 8.981647 GCTGATTTGTTCAACATTTTTCATAGT 58.018 29.630 0.00 0.00 32.78 2.12
2997 3046 9.199982 AGCTGATTTGTTCAACATTTTTCATAG 57.800 29.630 0.00 0.00 32.78 2.23
2998 3047 9.545105 AAGCTGATTTGTTCAACATTTTTCATA 57.455 25.926 0.00 0.00 32.78 2.15
2999 3048 8.441312 AAGCTGATTTGTTCAACATTTTTCAT 57.559 26.923 0.00 0.00 32.78 2.57
3000 3049 7.846644 AAGCTGATTTGTTCAACATTTTTCA 57.153 28.000 0.00 0.00 32.78 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.