>input_sequence_62819
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-----------------------------------------------------------------ATGTCGATGAGGAGT
TGCTATTCTTCTTCTCCTTTCCTCCGTGGGATCTCTAGAGCGGCGTGGAGGCACGCGGTGGCCGGCACTCCGAGTCTGAG
CGGCAGCCACAATCTGTGCCACTTGCCCCTCCGGCCTCGCGTGCCGCCCATCGCCCTCGGCCTTGCTGGACGCTTCTTCT
CTTCCTCCTCATCCAAATCCAAGCGCTCCACCAAGAAATCTGCCGCAAAGAAGGACACGCCGACGGGCTCTGCCGGCGGC
GGCCA---GTTCTATGTCGTCCGCAAGGGGGATGTCATCGGCATCTACAAGGACCTCGCCGACTGCCAAGCTCAAGTCAG
CAATTCGGTCTGCGATCCTTCAGCGACCGTGTACAAAGGCTGCTCTCTGCGTAAAGAAACCGAGGAGTATCTCGCAAAGC
GTGGGCTAAAGAATGCTCTGTATTCGATCAACGCAGCAGATGCAAGAGATGAGTTGTTTGATGCTCTGGCTCCCTGCCCT
TTCCAGCAGCCTGATGGAATTGCATCCTCTGCTTTGGAAACCGGACCATCAAAGA------------AGCATCCCAAAGT
CGCTGAACAGGAGCCGTTACCTGATAGTCATCTGTCCTGCATTCTCGAGTTTGATGGTGCTTGCAAAGGAAACCCTGGGA
AATCAGGTGCCGGCGTGATAATCAGGCGACCGGACGGATCCGTGATCGCTCACCTACGCGAGGGTTTGGGTATTGCAACA
TGTAATGCCGCTGAATATCACGCATTGCTCCTGGGGTTGAGGTATGCTGCTAACAAGGGATTCAAGTACGTTCGTGCTCA
AGGCGATTCTAAGCTTGTCTGTAACCAGGTCCAGGATCTCTGGCGTGTTAGGAATGATAATATGGCTGACTTGTGCAAGA
AAGCTAAGGAGCTCAAGGGAAAGTTTCTTCAGTTTCAGATCAACCATGCTTTGAGGAAATTTAATGCAGATGCTGATGCC
CAAGCTAACTTTGCTGTTGAACTTCCTGTTGGTGAAGTTCAAGAGCAGACAAACTTCCCATGCTAG--------------
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>chr5A_1_TraesCS5A01G355500
ACTCGGTTGACATTTCAATGAAATAATTACGTTCACCCTTGCATTTAACTCAATTATTAGCTTATGATGTACTGTGCATT
TCAATGTGTACTGCAATGTTTTAGTTTGCCAGAAGGTCGGGCTGGGCAAAGATCCAAGATTTGGCTCAAAAGATGTTGGA
GTTGTACCCATTTTGCAAGAGGGCGCACATCATAAATTCTCCGAATGTCCTTGACCCATCTTAACGGGTGTGATAAAAAA
TATAAAATCTTGTTATATCAATATGTCAGGAGAGAGTGTTCCAAAAAAAAGAGAATTACGCCGCTGCCTTCTTCACTATG
CAAAAAAATTAGGTGATTTGGAATGAGAAATGCGAGTGTTCCAAAAAAATATATGCCACCAACTTTCCTAATGTGCATGA
AAGAAACGACTTGATGCATGGGTGCATCTGCGCCTGGGCGTGAGGTGTAATACTCCCTCCATTTCATTTTAGTTTGCATA
TAAGATTTGGTCAAAGTCAAACTTTGTAAAGTTTGACTAGCTAAGTATAAAAACAATTTAACATTCATACTATGAAATCA
ATACTATTAGATGCATGATGAAATTAATTTTCATAACATATAACTTTAGTATTGTAGATGTTAATATATTTTTTAAAGTT
AGTCAAACTTTGTGAAGTTTGACTCTGATCAAATCTTATATGTTTTGGACCGAACACCCCCTTGTCTTCTAACCACCCCT
AAAAAAAACCTTGTCTTCTAACCACCCCT---AAAAAAAACCTTGTCTTCTAACC-TATCTCAGCCCGAACCGGCCGATG
GCGGCGCGCCGCTCCGCCACGCCCGGCCGCCGCAGCTGCTTCCCCTCAACCGCCGCCCGTCCTCACGCCCAGTAGCCCCA
GCTCGGTCTCCGCTCCCCCGCGCCGCCTCTCTCCTGTGCACGTCCGCT---------CGCCACCTGCTTGACCCGCTCAT
TCCCCACCCCCGCCCCCTTCCT------------CTGCCGGAAGGACGACGCCCTCTTTTGCTGGATGTCGATGAGGAGT
TGCTATTCTTCTTCTCCTTTCCTCCGTGGGATCTCTAGAGCGGCGTGGAGGCACGCGGTGGCCGGCACTCCGAGTCTGAG
CGGCAGCCACAATCTGTGCCACTTGCCCCTCCGGCCTCGCGTGCCGCCCATCGCCCTCGGCCTTGCTGGACGCTTCTTCT
CTTCCTCCTCATCCAAATCCAAGCGCTCCACCAAGAAATCTGCCGCAAAGAAGGACACGCCGACGGGCTCTGCCGGCGGC
GGCCA---GTTCTATGTCGTCCGCAAGGGGGATGTCATCGGCATCTACAAGGACCTCGCCGACTGCCAAGCTCAAGTCAG
CAATTCGGTCTGCGATCCTTCAGCGACCGTGTACAAAGGCTGCTCTCTGCGTAAAGAAACCGAGGAGTATCTCGCAAAGC
GTGGGCTAAAGAATGCTCTGTATTCGATCAACGCAGCAGATGCAAGAGATGAGTTGTTTGATGCTCTGGCTCCCTGCCCT
TTCCAGCAGCCTGATGGAATTGCATCCTCTGCTTTGGAAACCGGACCATCAAAGA------------AGCATCCCAAAGT
CGCTGAACAGGAGCCGTTACCTGATAGTCATCTGTCCTGCATTCTCGAGTTTGATGGTGCTTGCAAAGGAAACCCTGGGA
AATCAGGTGCCGGCGTGATAATCAGGCGACCGGACGGATCCGTGATCGCTCACCTACGCGAGGGTTTGGGTATTGCAACA
TGTAATGCCGCTGAATATCACGCATTGCTCCTGGGGTTGAGGTATGCTGCTAACAAGGGATTCAAGTACGTTCGTGCTCA
AGGCGATTCTAAGCTTGTCTGTAACCAGGTCCAGGATCTCTGGCGTGTTAGGAATGATAATATGGCTGACTTGTGCAAGA
AAGCTAAGGAGCTCAAGGGAAAGTTTCTTCAGTTTCAGATCAACCATGCTTTGAGGAAATTTAATGCAGATGCTGATGCC
CAAGCTAACTTTGCTGTTGAACTTCCTGTTGGTGAAGTTCAAGAGCAGACAAACTTCCCATGCTAGCTAGTGGTTGTGCG
TTGTGCTTCTGGGCAGTTCGCGTCCTGCTCCACCTTTTTTTGCTGCCACTGAAGCTATGTGACATCTGCTCATTTCACAT
TGACAGAAACAAGAATTCAAAGTCGAGCAGTTGGTGCGTAATTTGCGGTTGATCCGTGTGGTTGCGAGCTGGAGTCGAGA
TATTCGGATAAGAAGTGTAAGCTGAGGAAATTGTGCCTAGATTTTTGGATGAGCTTGAGTAGAAGCTTGGCACTAGTATT
TAACTTGCTGGTATTATGGAGACTACATACAACGTTTGATACTATTTGGTACTCCCTCTGTAAACTAATGTAAGACATTT
TTGCAGTTTACATTGAACTGTAAAAAAACGTCTTATATAGTATACAGAG-----GTAGTAGCATAGTTAATTTATATTGC
CTCGGCAAAGGGAAATATGCTACTGCTGCAATTTATCCGTCTTGCAACGTTGTTCAGAGTCGCAATACTACACTTTCAAA
ATACTAATGCAATCTCTAAGAGCGCCTTT-ATTCAAAAGAATTTTAGGATTTTTGAGAATTTGAGTTCTTAGTAATTTTC
TAAAAGAAAGTGATCGTTTGATTCACATGATTGAAATCCTTACGAATTATTATTTACCGATTCAATTGCACTCTGTTTTG
GAGCAAAATTACCATCAACTCAAACCATTGTTATAATCCATTTGTTTCTTTCTATGCTTTCAGAACTTTTCAATCCAATA
ATCTGTATTTTTTATCTTATAAGATTCAAGAGGATTTGGCACTCTAATTATACAGTTTTCCAATTTACACGTTTGAGAAT
TTTGTGAATGGCCTCTTTAGGTAGGCCGAGGTCATGGTTACGAAGGAACCAAGTTAAAAAGCAGTCTATGAGGAAAAACC
TAGGCGACTCGTGTGTGTGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTGGCATCGAGTGATGAACACAATCATATGTT
ATTAACTATGAAAAATGTTGAACAAATCAGCTTA
>chr5D_729
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--------CCTTGTTTTCTAACCACCCCTCAAAAAAAAAACCTTGTCTTCTAACCCTATCTCAGTCCGAACTGGCCGATG
GCGGCGCGCCGCTCCACCACGCCCCGCCGCCGCTGTTGCTTCCCCGCAACCTCCGCATGCCCTCACGCCCAGTAGTCCCC
GCTCGGCCTCCGCTCCTCCGCGCGGCCTGTCTCCTGTGCATGTCCGCTCGCCAAAGCCGCCACCTGCTTGACCCGCTCCT
CCGCGCGGTCTGTGTCCTGA-------------------------ACGACGCCCTCTTTTGCTGGATGTCGATGAGGAGT
TGCTATTTTTCTTCTCCTTTCCTCTGTGGGATCTCTAGAGCGGCGTGGAGGCACGCGGTGGCCGGCACTCCGAGCCTGAG
CGGGAGCCACAACCTGTGCCACTTGCCCCTCCGGCCTCCCGTGCCGCTCATTGCTCTTGGCCTTGCCGAGCGCTTCTTCT
CTTCCTCCTCATCCAAATCCAAGCGCCCCACCAAGAAATCTGCCGCAAAGAAGGGCGCGCCGACGGACTCTGCCGCCGGC
GGCCACCCGTTCTATGTCGTCCGCAAGGGGCACGTCATCGGCATCTACAAGAACCTCGCCGACTGTCAAGCTCAAGTCAG
CAATTCGGTCTGCGATCCTTCCGTGACCGTGTACAAAGGCTGCTCTCTGCGCAAAGAAACCGAGGAGTATCTCGCAAAGC
GCGGGCTCAAGAATGCTCTGTATTCCATCAATGCAGCAGATGCAAGAGATGAGTTGTTTGATGGTCTGGCTCCCTGCCCT
TTCCAGCAACCTGATGGAACTGCAACCTCTTCTACTCCGAAAAGGTCACAGGAGAAGGAAACAGGACAGCATCCCAAAGC
CGCTGAACAGGAGCCATTACCTGATAGTCATCTGTCCTGCATTCTTGAATTCGATGGTGCTTGCAAAGGGAACCCTGGGA
AATCAGGCGCCGGCGTGATAATAAGGCGACCGGACGGGTCCGTGATCGCTCAACTACGCGAGGGTTTGGGTGTTGCGACG
TGTAACGCTGCTGAATATCGTGCATTGCTCCTGGGGTTGAGATATGCTGCCAACAAGGGATTCAAGTATGTCCGTGCTCA
AGGCGATTCTAAGCTCGTCTGTAACCAGGTCCAGGATCTCTGGCGTGTTAGGAACGATAATATGGCAGACTTGTGCAAGA
AAGCTAAGGAACTCAAGCGGAAGTTTCTTCAGTTTCAAATCAACCATGCTTTGAGGAAATTTAATGCAGATGCTGATGCC
CAAGCTAACTTTGCTGTTGAACTTCCTGTTGGTGAAGTTCAAGAGCAGTCAAACTTCCCATGCTAGCTAGTGGTTGTGCG
TTGTGCTTCTGGGCACTTCGCGTCCTGCTCCACCTTTTTTTGCTGCCACTGAAGCTATGTGACATCTGCTCATTTCACAT
TGACAGAAACAAGAATTCAAAGTCGAGCAGTTGGTGCGTAATTTGCGGTTGATCCGTGTGGTTGCGAGCTGGAGTCTAGA
TATTGGGATAAGAAGTGCAAGCTGAGGAAATTGTGCCTAGATTTT-GGATGAGCTTGAGTAGAAGCTTGGCACTAGTATT
TAACTTGCTGATATTA---AGACTGCATACAACGTTTGATACGATTTGGTACTCCCTCTGTAAACTAATGTAAGACATTT
TTGCAGTTTACATTGAACTGT--AAAAACGTCTTATATAGTATACAGAG-----GTAGTAGCATAATTAATTGATATTGC
CTCG------------------------CAATTTATCTGTCTTACAACGTTGTTCAGAGTCGCAATACTACACTTTCAAA
ATACTAATTTAACCTCTAAGAGTGCCTTTGATTCAAAGGAATTTTAGGATTTTTGAGAATTTGAGTTCTTAGTAATTTTC
TAAAAGAAAGTGATCGTTTGATTCACATGATTGAAATCCTTACGAATTATTATTTACCGATTCAATTGCACTCTGTTTTG
GAGCAAAATTACCATCAACTCAAACCATTGTTATAATTCATTTGTTTCTTTCTATGCTTTCAGAACTTTTCTATCCAATA
ATCTTTATTTTTTATCTTATAGGATTCAAGAGGATTTGGCACTCTAATTATACAATATTCCAATTTACACGTTTGAGAAT
TTTGTGAATGGCCTCTTTAGGTAGGCCGAGGTCATGGTTACGAAGGAACCAAGTTAAAAGCAGTC---TGAGGAAAAACC
CCGGCGACTCGTGTGTGTGTGTGCGCGTGTGCGTGTGCGTGAGT------------------------------------
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>chr5B_758
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----------------------------------------CCTTGTCTTCTAACCCTATCTCAGTCCCAACTCGCCGATG
GCGGCGCGCCGCTCCGCCACGTCCCGCCGCCGCCGCTGCTTCCCCTCAACCTCCCGTTGCCCTCACGCCCAGTAGTCCCC
GCTCGGCCTCCGCTCCCCTGCGCCGCCTGTCGCCTGTGCACGTCCGCTCGCCAAAGCCGCCACCTGCTTGACCCGCTCAT
TCCCCACCCCCACCCCCACCCGCTCCCCCTCCCCCTGCCGGAAGGACGACGCCCTCTTTTGCTGGATGTCGATGAGGAGT
TGCTGTTCTTCTTCTCCTTTCCTCCGTGGGATCTCCAGAGCGGCGTGGAGGCACGCGGTGGCCGGCACTCCGAGCCTGCG
CGGCAGCCACAACCTGTGCCACTTGCCCCTCAGGCCTCCCGTGTCGCCCATCGCCCTCGGCCTTGCTGAGCGCTTCTTCT
CTTCCTCCTCGTCCAAATCCAAGCGCTCTACCAAGAAATCTGCGGCAAAGAAGGGCACGCCGATGGACTCTGCCGGCGGC
GGCCA---GTTCTATGTCGTCCGCAAGGGGGACGTCATCGGCATCTACAAGAACCTCGCCGACTGCCAAACACAAGTCAG
CAATTCGGTCTGCGATCCATCGGTGACCGTGTACAAAGGTTGTTCTCTGCGCAAAGAAACCGAGGAGTGTCTCGCAAAGC
GCGGGCTCAAGAATGCTCTGTATTCCATCAACGCAGCAGATGCAAGAGATGAGTTGTTTGATGCTCTGGCTCCCTGCCCT
TTCCAGCAACCTGATGGAATTACAACCTCTGCTTTGGAAACA-GACCATCAAAGA------------AGCATCCCAAAGT
GGCTGAACAGGAGCCGTTACCTGACAGTCACCTGTCCTGCATTCTTGAATTTGATGGTGCCTCCAAAGGGAATCCTGGGA
AATCAGGCGCCGGCGTGATAATAAGGCGACCAGACGGATCCGTGATCGCTCAGCTACGCGAGGGCTTGGGCATTGCGACG
TGTAACGCCGCTGAGTGTCGCGCATTGCTCCTGGGGTTGAGATATGCTGCCAACAAGGGATTCAAGTATGTCCGTGCTCA
AGGCGATTCTAAGCTCGTCTGTAACCAGGTCCAGGATCTCTGGCGCGCTAGGAATGCTAATTTGGCGGACTTGTGCAAGA
AAGCTAAGGAGCTCAAGGGAAAGTTTCTTCAGTTTCAAATCAACCATGCTTTGAGGAAATTTAATGCAGATGCTGATGCC
CAAGCTAACTTTGCTGTTGAACTTGCTGTTGGTGAAGTTCAGGAGCAGTCAAACTTCCCAGGCTAGTT----GTTGTGCG
TTGTGCTTCAAGGCAGTTTGCGTCCTGCTCCACC-TTTTTTGCTGCCACTGAAGCTA-----CATTTGCTCATTTCACAT
TGACAGAAACTATAATTCATTGTTGAGCAGTTGGTGCGTAATTTGCAATTGATCCGCGTGGTTACGAGCTGGAGTCGAGG
TACTGGAATCAGAAGTGCAAGCCGAGGAAATTGTGTCTAAAATTTTGTATGAGCTTGAGTAGCCTGTTAT---TAGTGTT
TAACTTACTGATATTATGTGGACTACATACAACGTCGGATACAATTTAGTACTCCCTCCGTATGAAAGTGTGAGACATTT
TTGCAGTTCAAATTATAATGC--AAAAAATGTCTTATAATTTGATACAGAGGCAGTATTAGCATAGTTAATTGATATTGC
CTCCACAAAGGGAAATATGCTTCTGCTGCAATTTATCTGTCTT-CAACATTGTTGAGAGTCACAATACCGCACTTCCAAT
ATA-----------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------S-------------------------------------------------S------S--------
------------------------S--------S-----------------S----SS-S---------------S---S
------S---------------------S---------------------------------------------------
------------------S--S----------------------------------------------------------
--------------------------------------------------------------------------S-----
------------S-------------------------S-----------------------------SS----------
------------------------------------------------------S-----------S-------------
--------------------------------S------------------S----------------------------
---------------------S-S---------------------------S----------------------------
-S-----S-----------------S------------------------------------------------------
--------S---------------S----------------SS-------------------------------------
---------------------------------------------S--S--------------------S----------
-------S--------------S-----------------------------S-----------------------S--S
-----S-------------S---------------------S--------S-----------------S--S--------
---------------S--------------------------------------------------S-------------
-------------------------------------S------------------------------------------
------------------------------------------------S-------------------------------
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----S------------S--------------------------------------------------------------
----------S-------S-----------------------S-------------------------------------
---------------------SS-------------------------------------------------S-------
----S----------------S---------------S-----S------------------------------------
--------SS--S---------S--------------S------------------------------------------
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-------------------------------------S---------------------------------S--------
----S----------------S--------------------------------S-S-----------------------
-----------------------------------------------------------SSSSSSSSS------------
SS---------------------S-------S-----S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_121
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---------------------TAGTTTGCCAGAAGGTCGGG---------------------------------------
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>reverse_1545
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------------------------TCCTCTGCTTTGGAAACCGG------------------------------------
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>forward_139
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---------------------------------------GGCTGGGCAAAGATCCAAGA---------------------
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>reverse_1766
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-----TGCCGCTGAATATCACGCAT-------------------------------------------------------
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>forward_710
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--------------------------------------------------CGAACACCCCCTTGTCTTCT----------
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>reverse_2524
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-------------------------------------------GCAACGTTGTTCAGAGTCGC-----------------
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