Multiple sequence alignment - TraesCS5A01G355200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G355200 chr5A 100.000 2022 0 0 783 2804 557314530 557316551 0.000000e+00 3735
1 TraesCS5A01G355200 chr5A 100.000 452 0 0 1 452 557313748 557314199 0.000000e+00 835
2 TraesCS5A01G355200 chr5D 89.104 2010 78 47 785 2707 441098959 441100914 0.000000e+00 2368
3 TraesCS5A01G355200 chr5D 83.721 258 14 12 210 452 441098573 441098817 4.700000e-53 219
4 TraesCS5A01G355200 chr5D 93.893 131 6 2 84 213 47283871 47284000 2.200000e-46 196
5 TraesCS5A01G355200 chr5B 87.524 2060 85 68 783 2707 536656462 536658484 0.000000e+00 2222
6 TraesCS5A01G355200 chr5B 83.004 253 16 14 211 452 536656084 536656320 1.320000e-48 204
7 TraesCS5A01G355200 chr5B 96.694 121 3 1 93 213 282392116 282391997 1.700000e-47 200
8 TraesCS5A01G355200 chr6D 80.000 340 54 8 1219 1548 472897338 472897003 3.610000e-59 239
9 TraesCS5A01G355200 chr6B 76.872 454 86 13 1219 1658 717968691 717968243 3.610000e-59 239
10 TraesCS5A01G355200 chr6B 97.458 118 3 0 96 213 181705045 181705162 4.740000e-48 202
11 TraesCS5A01G355200 chr6A 79.341 334 58 7 1219 1548 616916961 616917287 1.010000e-54 224
12 TraesCS5A01G355200 chr7B 94.531 128 7 0 97 224 692308821 692308694 6.130000e-47 198
13 TraesCS5A01G355200 chr7B 87.755 98 7 2 2188 2285 604278568 604278660 2.950000e-20 110
14 TraesCS5A01G355200 chr4B 94.531 128 6 1 94 221 422040373 422040247 2.200000e-46 196
15 TraesCS5A01G355200 chr4B 93.798 129 7 1 90 218 97557015 97557142 2.850000e-45 193
16 TraesCS5A01G355200 chr4B 90.816 98 4 2 2188 2285 225958569 225958661 2.930000e-25 126
17 TraesCS5A01G355200 chr4B 90.816 98 4 2 2188 2285 235738955 235739047 2.930000e-25 126
18 TraesCS5A01G355200 chr4B 89.583 96 5 3 2188 2283 199055773 199055863 1.760000e-22 117
19 TraesCS5A01G355200 chr3B 95.200 125 5 1 97 221 31105662 31105785 2.200000e-46 196
20 TraesCS5A01G355200 chr4A 93.182 132 9 0 90 221 673090092 673089961 7.920000e-46 195
21 TraesCS5A01G355200 chr1D 93.182 132 7 2 84 214 415493064 415493194 2.850000e-45 193
22 TraesCS5A01G355200 chr2A 90.816 98 4 2 2188 2285 315960219 315960311 2.930000e-25 126
23 TraesCS5A01G355200 chr7A 90.323 93 4 2 2196 2288 474142953 474142866 1.760000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G355200 chr5A 557313748 557316551 2803 False 2285.0 3735 100.0000 1 2804 2 chr5A.!!$F1 2803
1 TraesCS5A01G355200 chr5D 441098573 441100914 2341 False 1293.5 2368 86.4125 210 2707 2 chr5D.!!$F2 2497
2 TraesCS5A01G355200 chr5B 536656084 536658484 2400 False 1213.0 2222 85.2640 211 2707 2 chr5B.!!$F1 2496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2069 0.3199 CGGACTGCTATGGGGATTCG 60.32 60.0 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.768833 GTTGGGACCAACGAAGAAAC 57.231 50.000 17.51 0.00 45.24 2.78
27 28 2.018515 GTTGGGACCAACGAAGAAACA 58.981 47.619 17.51 0.00 45.24 2.83
28 29 2.621526 GTTGGGACCAACGAAGAAACAT 59.378 45.455 17.51 0.00 45.24 2.71
29 30 3.773418 TGGGACCAACGAAGAAACATA 57.227 42.857 0.00 0.00 0.00 2.29
30 31 4.088056 TGGGACCAACGAAGAAACATAA 57.912 40.909 0.00 0.00 0.00 1.90
31 32 4.069304 TGGGACCAACGAAGAAACATAAG 58.931 43.478 0.00 0.00 0.00 1.73
32 33 3.119955 GGGACCAACGAAGAAACATAAGC 60.120 47.826 0.00 0.00 0.00 3.09
33 34 3.500680 GGACCAACGAAGAAACATAAGCA 59.499 43.478 0.00 0.00 0.00 3.91
34 35 4.156008 GGACCAACGAAGAAACATAAGCAT 59.844 41.667 0.00 0.00 0.00 3.79
35 36 5.296813 ACCAACGAAGAAACATAAGCATC 57.703 39.130 0.00 0.00 0.00 3.91
36 37 4.759693 ACCAACGAAGAAACATAAGCATCA 59.240 37.500 0.00 0.00 0.00 3.07
37 38 5.088739 CCAACGAAGAAACATAAGCATCAC 58.911 41.667 0.00 0.00 0.00 3.06
38 39 5.106555 CCAACGAAGAAACATAAGCATCACT 60.107 40.000 0.00 0.00 0.00 3.41
39 40 5.536554 ACGAAGAAACATAAGCATCACTG 57.463 39.130 0.00 0.00 0.00 3.66
40 41 5.237815 ACGAAGAAACATAAGCATCACTGA 58.762 37.500 0.00 0.00 0.00 3.41
41 42 5.877012 ACGAAGAAACATAAGCATCACTGAT 59.123 36.000 0.00 0.00 0.00 2.90
42 43 6.036517 ACGAAGAAACATAAGCATCACTGATC 59.963 38.462 0.00 0.00 0.00 2.92
43 44 6.036408 CGAAGAAACATAAGCATCACTGATCA 59.964 38.462 0.00 0.00 0.00 2.92
44 45 6.674694 AGAAACATAAGCATCACTGATCAC 57.325 37.500 0.00 0.00 0.00 3.06
45 46 5.587844 AGAAACATAAGCATCACTGATCACC 59.412 40.000 0.00 0.00 0.00 4.02
46 47 3.813443 ACATAAGCATCACTGATCACCC 58.187 45.455 0.00 0.00 0.00 4.61
47 48 3.144506 CATAAGCATCACTGATCACCCC 58.855 50.000 0.00 0.00 0.00 4.95
48 49 0.994247 AAGCATCACTGATCACCCCA 59.006 50.000 0.00 0.00 0.00 4.96
49 50 1.219773 AGCATCACTGATCACCCCAT 58.780 50.000 0.00 0.00 0.00 4.00
50 51 2.411583 AGCATCACTGATCACCCCATA 58.588 47.619 0.00 0.00 0.00 2.74
51 52 2.779430 AGCATCACTGATCACCCCATAA 59.221 45.455 0.00 0.00 0.00 1.90
52 53 3.202818 AGCATCACTGATCACCCCATAAA 59.797 43.478 0.00 0.00 0.00 1.40
53 54 4.141088 AGCATCACTGATCACCCCATAAAT 60.141 41.667 0.00 0.00 0.00 1.40
54 55 5.073554 AGCATCACTGATCACCCCATAAATA 59.926 40.000 0.00 0.00 0.00 1.40
55 56 5.182001 GCATCACTGATCACCCCATAAATAC 59.818 44.000 0.00 0.00 0.00 1.89
56 57 5.966853 TCACTGATCACCCCATAAATACA 57.033 39.130 0.00 0.00 0.00 2.29
57 58 5.928976 TCACTGATCACCCCATAAATACAG 58.071 41.667 0.00 0.00 0.00 2.74
58 59 5.428457 TCACTGATCACCCCATAAATACAGT 59.572 40.000 0.00 0.00 36.69 3.55
59 60 5.760253 CACTGATCACCCCATAAATACAGTC 59.240 44.000 0.00 0.00 34.57 3.51
60 61 5.667626 ACTGATCACCCCATAAATACAGTCT 59.332 40.000 0.00 0.00 31.87 3.24
61 62 6.174720 TGATCACCCCATAAATACAGTCTC 57.825 41.667 0.00 0.00 0.00 3.36
62 63 5.665360 TGATCACCCCATAAATACAGTCTCA 59.335 40.000 0.00 0.00 0.00 3.27
63 64 5.353394 TCACCCCATAAATACAGTCTCAC 57.647 43.478 0.00 0.00 0.00 3.51
64 65 4.780554 TCACCCCATAAATACAGTCTCACA 59.219 41.667 0.00 0.00 0.00 3.58
65 66 5.249622 TCACCCCATAAATACAGTCTCACAA 59.750 40.000 0.00 0.00 0.00 3.33
66 67 5.943416 CACCCCATAAATACAGTCTCACAAA 59.057 40.000 0.00 0.00 0.00 2.83
67 68 5.944007 ACCCCATAAATACAGTCTCACAAAC 59.056 40.000 0.00 0.00 0.00 2.93
68 69 5.943416 CCCCATAAATACAGTCTCACAAACA 59.057 40.000 0.00 0.00 0.00 2.83
69 70 6.432783 CCCCATAAATACAGTCTCACAAACAA 59.567 38.462 0.00 0.00 0.00 2.83
70 71 7.305474 CCCATAAATACAGTCTCACAAACAAC 58.695 38.462 0.00 0.00 0.00 3.32
71 72 7.040755 CCCATAAATACAGTCTCACAAACAACA 60.041 37.037 0.00 0.00 0.00 3.33
72 73 7.803189 CCATAAATACAGTCTCACAAACAACAC 59.197 37.037 0.00 0.00 0.00 3.32
73 74 5.751243 AATACAGTCTCACAAACAACACC 57.249 39.130 0.00 0.00 0.00 4.16
74 75 2.365582 ACAGTCTCACAAACAACACCC 58.634 47.619 0.00 0.00 0.00 4.61
75 76 1.676006 CAGTCTCACAAACAACACCCC 59.324 52.381 0.00 0.00 0.00 4.95
76 77 1.283613 AGTCTCACAAACAACACCCCA 59.716 47.619 0.00 0.00 0.00 4.96
77 78 2.096248 GTCTCACAAACAACACCCCAA 58.904 47.619 0.00 0.00 0.00 4.12
78 79 2.494073 GTCTCACAAACAACACCCCAAA 59.506 45.455 0.00 0.00 0.00 3.28
79 80 3.056465 GTCTCACAAACAACACCCCAAAA 60.056 43.478 0.00 0.00 0.00 2.44
80 81 3.194542 TCTCACAAACAACACCCCAAAAG 59.805 43.478 0.00 0.00 0.00 2.27
81 82 3.165875 TCACAAACAACACCCCAAAAGA 58.834 40.909 0.00 0.00 0.00 2.52
82 83 3.578716 TCACAAACAACACCCCAAAAGAA 59.421 39.130 0.00 0.00 0.00 2.52
83 84 4.223923 TCACAAACAACACCCCAAAAGAAT 59.776 37.500 0.00 0.00 0.00 2.40
84 85 4.332268 CACAAACAACACCCCAAAAGAATG 59.668 41.667 0.00 0.00 0.00 2.67
85 86 4.019771 ACAAACAACACCCCAAAAGAATGT 60.020 37.500 0.00 0.00 0.00 2.71
86 87 4.400529 AACAACACCCCAAAAGAATGTC 57.599 40.909 0.00 0.00 0.00 3.06
87 88 2.360801 ACAACACCCCAAAAGAATGTCG 59.639 45.455 0.00 0.00 0.00 4.35
88 89 0.958822 ACACCCCAAAAGAATGTCGC 59.041 50.000 0.00 0.00 0.00 5.19
89 90 0.958091 CACCCCAAAAGAATGTCGCA 59.042 50.000 0.00 0.00 0.00 5.10
90 91 1.339610 CACCCCAAAAGAATGTCGCAA 59.660 47.619 0.00 0.00 0.00 4.85
91 92 2.035632 ACCCCAAAAGAATGTCGCAAA 58.964 42.857 0.00 0.00 0.00 3.68
92 93 2.432510 ACCCCAAAAGAATGTCGCAAAA 59.567 40.909 0.00 0.00 0.00 2.44
93 94 3.070878 ACCCCAAAAGAATGTCGCAAAAT 59.929 39.130 0.00 0.00 0.00 1.82
94 95 4.282195 ACCCCAAAAGAATGTCGCAAAATA 59.718 37.500 0.00 0.00 0.00 1.40
95 96 4.625311 CCCCAAAAGAATGTCGCAAAATAC 59.375 41.667 0.00 0.00 0.00 1.89
96 97 5.469479 CCCAAAAGAATGTCGCAAAATACT 58.531 37.500 0.00 0.00 0.00 2.12
97 98 6.349777 CCCCAAAAGAATGTCGCAAAATACTA 60.350 38.462 0.00 0.00 0.00 1.82
98 99 6.526674 CCCAAAAGAATGTCGCAAAATACTAC 59.473 38.462 0.00 0.00 0.00 2.73
99 100 7.305474 CCAAAAGAATGTCGCAAAATACTACT 58.695 34.615 0.00 0.00 0.00 2.57
100 101 7.481798 CCAAAAGAATGTCGCAAAATACTACTC 59.518 37.037 0.00 0.00 0.00 2.59
101 102 6.663944 AAGAATGTCGCAAAATACTACTCC 57.336 37.500 0.00 0.00 0.00 3.85
102 103 5.116882 AGAATGTCGCAAAATACTACTCCC 58.883 41.667 0.00 0.00 0.00 4.30
103 104 4.755266 ATGTCGCAAAATACTACTCCCT 57.245 40.909 0.00 0.00 0.00 4.20
104 105 4.119442 TGTCGCAAAATACTACTCCCTC 57.881 45.455 0.00 0.00 0.00 4.30
105 106 3.118884 TGTCGCAAAATACTACTCCCTCC 60.119 47.826 0.00 0.00 0.00 4.30
106 107 2.100252 TCGCAAAATACTACTCCCTCCG 59.900 50.000 0.00 0.00 0.00 4.63
107 108 2.159142 CGCAAAATACTACTCCCTCCGT 60.159 50.000 0.00 0.00 0.00 4.69
108 109 3.455327 GCAAAATACTACTCCCTCCGTC 58.545 50.000 0.00 0.00 0.00 4.79
109 110 3.740452 GCAAAATACTACTCCCTCCGTCC 60.740 52.174 0.00 0.00 0.00 4.79
110 111 1.978454 AATACTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
111 112 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
112 113 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
113 114 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
114 115 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
115 116 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
116 117 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
117 118 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
118 119 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
119 120 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
120 121 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
121 122 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
122 123 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
123 124 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
124 125 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
125 126 3.055675 TCCGTCCGGAAATACTTGTCATT 60.056 43.478 5.23 0.00 42.05 2.57
126 127 3.063452 CCGTCCGGAAATACTTGTCATTG 59.937 47.826 5.23 0.00 37.50 2.82
127 128 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
128 129 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
129 130 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
130 131 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
131 132 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
132 133 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
133 134 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
134 135 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
135 136 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
136 137 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
140 141 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
142 143 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
143 144 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
145 146 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
146 147 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
167 168 9.277783 AGATGTATTTTAGTTGTAGATGCATCC 57.722 33.333 23.06 9.46 39.26 3.51
168 169 8.978874 ATGTATTTTAGTTGTAGATGCATCCA 57.021 30.769 23.06 12.10 0.00 3.41
169 170 8.978874 TGTATTTTAGTTGTAGATGCATCCAT 57.021 30.769 23.06 8.39 0.00 3.41
170 171 9.407380 TGTATTTTAGTTGTAGATGCATCCATT 57.593 29.630 23.06 7.62 0.00 3.16
173 174 9.807649 ATTTTAGTTGTAGATGCATCCATTTTC 57.192 29.630 23.06 9.68 0.00 2.29
174 175 7.936496 TTAGTTGTAGATGCATCCATTTTCA 57.064 32.000 23.06 6.02 0.00 2.69
175 176 8.523915 TTAGTTGTAGATGCATCCATTTTCAT 57.476 30.769 23.06 4.58 0.00 2.57
176 177 7.035840 AGTTGTAGATGCATCCATTTTCATC 57.964 36.000 23.06 7.89 36.49 2.92
177 178 6.040166 AGTTGTAGATGCATCCATTTTCATCC 59.960 38.462 23.06 3.48 36.81 3.51
178 179 5.447757 TGTAGATGCATCCATTTTCATCCA 58.552 37.500 23.06 0.00 36.81 3.41
179 180 6.072649 TGTAGATGCATCCATTTTCATCCAT 58.927 36.000 23.06 2.35 36.81 3.41
180 181 6.551975 TGTAGATGCATCCATTTTCATCCATT 59.448 34.615 23.06 1.91 36.81 3.16
181 182 6.494666 AGATGCATCCATTTTCATCCATTT 57.505 33.333 23.06 0.00 36.81 2.32
182 183 6.895782 AGATGCATCCATTTTCATCCATTTT 58.104 32.000 23.06 0.00 36.81 1.82
183 184 8.025270 AGATGCATCCATTTTCATCCATTTTA 57.975 30.769 23.06 0.00 36.81 1.52
184 185 8.487848 AGATGCATCCATTTTCATCCATTTTAA 58.512 29.630 23.06 0.00 36.81 1.52
185 186 9.280174 GATGCATCCATTTTCATCCATTTTAAT 57.720 29.630 16.23 0.00 31.62 1.40
186 187 8.439993 TGCATCCATTTTCATCCATTTTAATG 57.560 30.769 0.00 0.00 36.17 1.90
187 188 8.047911 TGCATCCATTTTCATCCATTTTAATGT 58.952 29.630 2.13 0.00 34.60 2.71
188 189 8.553696 GCATCCATTTTCATCCATTTTAATGTC 58.446 33.333 2.13 0.00 34.60 3.06
189 190 9.602568 CATCCATTTTCATCCATTTTAATGTCA 57.397 29.630 2.13 0.00 34.60 3.58
191 192 9.656040 TCCATTTTCATCCATTTTAATGTCAAG 57.344 29.630 2.13 0.00 34.60 3.02
192 193 9.439500 CCATTTTCATCCATTTTAATGTCAAGT 57.561 29.630 2.13 0.00 34.60 3.16
199 200 9.236691 CATCCATTTTAATGTCAAGTATTTCCG 57.763 33.333 2.13 0.00 34.60 4.30
200 201 7.767261 TCCATTTTAATGTCAAGTATTTCCGG 58.233 34.615 0.00 0.00 34.60 5.14
201 202 7.612244 TCCATTTTAATGTCAAGTATTTCCGGA 59.388 33.333 0.00 0.00 34.60 5.14
202 203 7.700656 CCATTTTAATGTCAAGTATTTCCGGAC 59.299 37.037 1.83 0.00 34.60 4.79
203 204 6.411630 TTTAATGTCAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
204 205 2.373540 TGTCAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
205 206 1.894466 TGTCAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
206 207 2.094390 TGTCAAGTATTTCCGGACGGAG 60.094 50.000 13.64 0.73 46.06 4.63
207 208 1.479323 TCAAGTATTTCCGGACGGAGG 59.521 52.381 13.64 0.00 46.06 4.30
208 209 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
221 222 1.893801 ACGGAGGGAGTACAAGACAAG 59.106 52.381 0.00 0.00 0.00 3.16
222 223 2.168496 CGGAGGGAGTACAAGACAAGA 58.832 52.381 0.00 0.00 0.00 3.02
223 224 2.761208 CGGAGGGAGTACAAGACAAGAT 59.239 50.000 0.00 0.00 0.00 2.40
224 225 3.429547 CGGAGGGAGTACAAGACAAGATG 60.430 52.174 0.00 0.00 0.00 2.90
225 226 3.526534 GAGGGAGTACAAGACAAGATGC 58.473 50.000 0.00 0.00 0.00 3.91
226 227 2.906389 AGGGAGTACAAGACAAGATGCA 59.094 45.455 0.00 0.00 0.00 3.96
232 233 5.510671 AGTACAAGACAAGATGCAAAAACG 58.489 37.500 0.00 0.00 0.00 3.60
244 245 5.514914 AGATGCAAAAACGTAAACAACACAG 59.485 36.000 0.00 0.00 0.00 3.66
277 278 7.056635 AGAAGAAGAAGAAAAGATGACAACCA 58.943 34.615 0.00 0.00 0.00 3.67
280 281 7.484140 AGAAGAAGAAAAGATGACAACCAAAC 58.516 34.615 0.00 0.00 0.00 2.93
281 282 6.773976 AGAAGAAAAGATGACAACCAAACA 57.226 33.333 0.00 0.00 0.00 2.83
288 289 3.446873 AGATGACAACCAAACACAAAGCA 59.553 39.130 0.00 0.00 0.00 3.91
291 292 3.993081 TGACAACCAAACACAAAGCAAAG 59.007 39.130 0.00 0.00 0.00 2.77
292 293 2.741517 ACAACCAAACACAAAGCAAAGC 59.258 40.909 0.00 0.00 0.00 3.51
294 295 3.051081 ACCAAACACAAAGCAAAGCAA 57.949 38.095 0.00 0.00 0.00 3.91
296 297 3.817647 ACCAAACACAAAGCAAAGCAAAA 59.182 34.783 0.00 0.00 0.00 2.44
336 337 1.393883 GCCCTTTTTCTAAGCGACGAG 59.606 52.381 0.00 0.00 0.00 4.18
351 355 1.890041 CGAGGAACCAAACCGCACA 60.890 57.895 0.00 0.00 0.00 4.57
377 383 3.435105 TGCGATTTTGCTTTGAAGTGT 57.565 38.095 0.00 0.00 35.36 3.55
378 384 3.114809 TGCGATTTTGCTTTGAAGTGTG 58.885 40.909 0.00 0.00 35.36 3.82
937 958 4.929707 GGGGGCTAATCGCGGTGG 62.930 72.222 6.13 0.00 40.44 4.61
968 1002 1.108776 TAGGGTTTCGGATCTGGTCG 58.891 55.000 0.62 0.00 0.00 4.79
969 1003 1.153429 GGGTTTCGGATCTGGTCGG 60.153 63.158 0.62 0.00 0.00 4.79
970 1004 1.595357 GGTTTCGGATCTGGTCGGT 59.405 57.895 0.62 0.00 0.00 4.69
971 1005 0.036671 GGTTTCGGATCTGGTCGGTT 60.037 55.000 0.62 0.00 0.00 4.44
972 1006 1.609841 GGTTTCGGATCTGGTCGGTTT 60.610 52.381 0.62 0.00 0.00 3.27
973 1007 2.148768 GTTTCGGATCTGGTCGGTTTT 58.851 47.619 0.62 0.00 0.00 2.43
974 1008 2.551032 GTTTCGGATCTGGTCGGTTTTT 59.449 45.455 0.62 0.00 0.00 1.94
975 1009 1.803334 TCGGATCTGGTCGGTTTTTG 58.197 50.000 0.62 0.00 0.00 2.44
976 1010 0.802494 CGGATCTGGTCGGTTTTTGG 59.198 55.000 0.00 0.00 0.00 3.28
977 1011 1.880646 CGGATCTGGTCGGTTTTTGGT 60.881 52.381 0.00 0.00 0.00 3.67
978 1012 2.235891 GGATCTGGTCGGTTTTTGGTT 58.764 47.619 0.00 0.00 0.00 3.67
979 1013 2.626266 GGATCTGGTCGGTTTTTGGTTT 59.374 45.455 0.00 0.00 0.00 3.27
980 1014 3.552068 GGATCTGGTCGGTTTTTGGTTTG 60.552 47.826 0.00 0.00 0.00 2.93
981 1015 1.135333 TCTGGTCGGTTTTTGGTTTGC 59.865 47.619 0.00 0.00 0.00 3.68
982 1016 1.136110 CTGGTCGGTTTTTGGTTTGCT 59.864 47.619 0.00 0.00 0.00 3.91
983 1017 1.550976 TGGTCGGTTTTTGGTTTGCTT 59.449 42.857 0.00 0.00 0.00 3.91
984 1018 2.028020 TGGTCGGTTTTTGGTTTGCTTT 60.028 40.909 0.00 0.00 0.00 3.51
985 1019 2.350192 GGTCGGTTTTTGGTTTGCTTTG 59.650 45.455 0.00 0.00 0.00 2.77
986 1020 2.350192 GTCGGTTTTTGGTTTGCTTTGG 59.650 45.455 0.00 0.00 0.00 3.28
987 1021 2.028020 TCGGTTTTTGGTTTGCTTTGGT 60.028 40.909 0.00 0.00 0.00 3.67
988 1022 2.350192 CGGTTTTTGGTTTGCTTTGGTC 59.650 45.455 0.00 0.00 0.00 4.02
989 1023 2.680841 GGTTTTTGGTTTGCTTTGGTCC 59.319 45.455 0.00 0.00 0.00 4.46
1587 1645 4.176851 GGCGAGGACGACGAGGAC 62.177 72.222 0.00 0.00 42.66 3.85
1588 1646 4.517703 GCGAGGACGACGAGGACG 62.518 72.222 0.00 3.46 42.66 4.79
1589 1647 2.812609 CGAGGACGACGAGGACGA 60.813 66.667 0.00 0.00 41.06 4.20
1590 1648 2.172372 CGAGGACGACGAGGACGAT 61.172 63.158 0.00 0.00 41.06 3.73
1591 1649 1.352404 GAGGACGACGAGGACGATG 59.648 63.158 0.00 0.00 42.66 3.84
1592 1650 1.078637 AGGACGACGAGGACGATGA 60.079 57.895 0.00 0.00 42.66 2.92
1933 2025 2.094906 GCATCAGCATCAGCAGTTCAAA 60.095 45.455 0.00 0.00 45.49 2.69
1946 2038 5.466058 CAGCAGTTCAAATAGCATCCTAGAG 59.534 44.000 0.00 0.00 0.00 2.43
1970 2069 5.685337 GCCAGTTATTACTCTTCCTTCCCTC 60.685 48.000 0.00 0.00 30.26 4.30
1996 2095 1.269988 CCCATAGCAGTCCGATCTGTG 60.270 57.143 8.19 0.00 37.70 3.66
2032 2131 1.183676 GCCAGATCCCCATTCCATGC 61.184 60.000 0.00 0.00 0.00 4.06
2034 2133 0.541296 CAGATCCCCATTCCATGCCC 60.541 60.000 0.00 0.00 0.00 5.36
2035 2134 1.000590 AGATCCCCATTCCATGCCCA 61.001 55.000 0.00 0.00 0.00 5.36
2036 2135 0.115745 GATCCCCATTCCATGCCCAT 59.884 55.000 0.00 0.00 0.00 4.00
2061 2160 3.697542 TGTAGTCGTAGCAGCATTAGGAA 59.302 43.478 0.00 0.00 0.00 3.36
2062 2161 3.444703 AGTCGTAGCAGCATTAGGAAG 57.555 47.619 0.00 0.00 0.00 3.46
2063 2162 2.101582 AGTCGTAGCAGCATTAGGAAGG 59.898 50.000 0.00 0.00 0.00 3.46
2065 2164 2.362397 TCGTAGCAGCATTAGGAAGGAG 59.638 50.000 0.00 0.00 0.00 3.69
2066 2165 2.101582 CGTAGCAGCATTAGGAAGGAGT 59.898 50.000 0.00 0.00 0.00 3.85
2070 2169 2.680339 GCAGCATTAGGAAGGAGTCAAC 59.320 50.000 0.00 0.00 0.00 3.18
2072 2171 2.912956 AGCATTAGGAAGGAGTCAACCA 59.087 45.455 0.00 0.00 0.00 3.67
2075 2183 4.082733 GCATTAGGAAGGAGTCAACCAAAC 60.083 45.833 0.00 0.00 0.00 2.93
2082 2190 3.642141 AGGAGTCAACCAAACCAATGTT 58.358 40.909 0.00 0.00 35.82 2.71
2097 2205 9.128107 CAAACCAATGTTTTCATGTAGATGTAC 57.872 33.333 0.00 0.00 41.92 2.90
2108 2216 6.732154 TCATGTAGATGTACTAGCGGTTAAC 58.268 40.000 1.30 0.00 0.00 2.01
2146 2257 4.480031 GGCGAGGAAGACGAAGAC 57.520 61.111 0.00 0.00 0.00 3.01
2171 2282 2.058595 GGGCCAGCGTTCCTCTAGA 61.059 63.158 4.39 0.00 0.00 2.43
2172 2283 1.403687 GGGCCAGCGTTCCTCTAGAT 61.404 60.000 4.39 0.00 0.00 1.98
2173 2284 0.032815 GGCCAGCGTTCCTCTAGATC 59.967 60.000 0.00 0.00 0.00 2.75
2174 2285 0.032815 GCCAGCGTTCCTCTAGATCC 59.967 60.000 0.00 0.00 0.00 3.36
2223 2341 7.571080 ACTCCAGTTATTAGTCAGTAGTAGC 57.429 40.000 0.00 0.00 0.00 3.58
2268 2389 6.108015 ACATGTTGTTCCATTATTGCATTCC 58.892 36.000 0.00 0.00 0.00 3.01
2292 2413 0.320050 TCTGTACCATTCTGTGCGCA 59.680 50.000 5.66 5.66 0.00 6.09
2389 2514 4.369182 CAGCCGTGGGAGTTTTATACTAG 58.631 47.826 0.00 0.00 37.17 2.57
2391 2516 4.117685 GCCGTGGGAGTTTTATACTAGTG 58.882 47.826 5.39 0.00 37.17 2.74
2394 2519 4.804139 CGTGGGAGTTTTATACTAGTGCTG 59.196 45.833 5.39 0.00 37.17 4.41
2399 2533 8.377034 TGGGAGTTTTATACTAGTGCTGTTTTA 58.623 33.333 5.39 0.00 37.17 1.52
2514 2681 2.174969 GTGGTGACGGCGTGTTGAA 61.175 57.895 21.19 0.00 0.00 2.69
2515 2682 1.227704 TGGTGACGGCGTGTTGAAT 60.228 52.632 21.19 0.00 0.00 2.57
2537 2704 4.373116 GCTCGGCTCGGTTGGTCA 62.373 66.667 0.00 0.00 0.00 4.02
2539 2706 3.649277 CTCGGCTCGGTTGGTCAGG 62.649 68.421 0.00 0.00 0.00 3.86
2542 2709 2.045926 GCTCGGTTGGTCAGGCAT 60.046 61.111 0.00 0.00 0.00 4.40
2553 2721 4.415150 CAGGCATGCAGGTCCGGT 62.415 66.667 21.36 0.00 0.00 5.28
2554 2722 3.650950 AGGCATGCAGGTCCGGTT 61.651 61.111 21.36 0.00 0.00 4.44
2570 2746 1.735571 CGGTTAACCATTCCGAACTGG 59.264 52.381 24.14 0.00 46.05 4.00
2571 2747 2.089201 GGTTAACCATTCCGAACTGGG 58.911 52.381 20.12 4.80 36.82 4.45
2572 2748 1.471287 GTTAACCATTCCGAACTGGGC 59.529 52.381 11.80 0.00 38.76 5.36
2573 2749 0.391927 TAACCATTCCGAACTGGGCG 60.392 55.000 11.80 0.00 38.76 6.13
2663 2858 2.699768 ATTGGCAATGGCGACGTGG 61.700 57.895 12.82 0.00 42.47 4.94
2695 2890 1.271543 TGGCATCTTGTGTGGAGAAGG 60.272 52.381 0.00 0.00 0.00 3.46
2718 2913 3.898509 CCGGGCGAGAGAGCTCTG 61.899 72.222 23.91 8.22 40.61 3.35
2719 2914 3.898509 CGGGCGAGAGAGCTCTGG 61.899 72.222 23.91 11.28 40.61 3.86
2720 2915 3.535962 GGGCGAGAGAGCTCTGGG 61.536 72.222 23.91 10.89 40.61 4.45
2734 2929 4.838307 TGGGCTATCCAGGAGCTT 57.162 55.556 0.00 0.00 41.46 3.74
2735 2930 3.027533 TGGGCTATCCAGGAGCTTT 57.972 52.632 0.00 0.00 41.46 3.51
2736 2931 1.298953 TGGGCTATCCAGGAGCTTTT 58.701 50.000 0.00 0.00 41.46 2.27
2737 2932 1.640670 TGGGCTATCCAGGAGCTTTTT 59.359 47.619 0.00 0.00 41.46 1.94
2760 2955 8.561738 TTTTCTTCTTCTCGGCTTATTAATGT 57.438 30.769 0.00 0.00 0.00 2.71
2761 2956 8.561738 TTTCTTCTTCTCGGCTTATTAATGTT 57.438 30.769 0.00 0.00 0.00 2.71
2762 2957 8.561738 TTCTTCTTCTCGGCTTATTAATGTTT 57.438 30.769 0.00 0.00 0.00 2.83
2763 2958 8.197988 TCTTCTTCTCGGCTTATTAATGTTTC 57.802 34.615 0.00 0.00 0.00 2.78
2764 2959 8.041323 TCTTCTTCTCGGCTTATTAATGTTTCT 58.959 33.333 0.00 0.00 0.00 2.52
2765 2960 8.561738 TTCTTCTCGGCTTATTAATGTTTCTT 57.438 30.769 0.00 0.00 0.00 2.52
2766 2961 9.661563 TTCTTCTCGGCTTATTAATGTTTCTTA 57.338 29.630 0.00 0.00 0.00 2.10
2767 2962 9.832445 TCTTCTCGGCTTATTAATGTTTCTTAT 57.168 29.630 0.00 0.00 0.00 1.73
2769 2964 9.607988 TTCTCGGCTTATTAATGTTTCTTATCA 57.392 29.630 0.00 0.00 0.00 2.15
2770 2965 9.778741 TCTCGGCTTATTAATGTTTCTTATCAT 57.221 29.630 0.00 0.00 0.00 2.45
2772 2967 8.999431 TCGGCTTATTAATGTTTCTTATCATCC 58.001 33.333 0.00 0.00 0.00 3.51
2773 2968 7.957484 CGGCTTATTAATGTTTCTTATCATCCG 59.043 37.037 0.00 0.00 0.00 4.18
2774 2969 8.237267 GGCTTATTAATGTTTCTTATCATCCGG 58.763 37.037 0.00 0.00 0.00 5.14
2775 2970 8.237267 GCTTATTAATGTTTCTTATCATCCGGG 58.763 37.037 0.00 0.00 0.00 5.73
2776 2971 9.284968 CTTATTAATGTTTCTTATCATCCGGGT 57.715 33.333 0.00 0.00 0.00 5.28
2778 2973 8.848474 ATTAATGTTTCTTATCATCCGGGTAG 57.152 34.615 0.00 0.00 0.00 3.18
2779 2974 4.067972 TGTTTCTTATCATCCGGGTAGC 57.932 45.455 0.00 0.00 0.00 3.58
2780 2975 3.181458 TGTTTCTTATCATCCGGGTAGCC 60.181 47.826 0.00 0.00 0.00 3.93
2781 2976 2.391926 TCTTATCATCCGGGTAGCCA 57.608 50.000 12.31 0.00 0.00 4.75
2782 2977 2.684943 TCTTATCATCCGGGTAGCCAA 58.315 47.619 12.31 0.00 0.00 4.52
2783 2978 3.248024 TCTTATCATCCGGGTAGCCAAT 58.752 45.455 12.31 0.59 0.00 3.16
2784 2979 3.260884 TCTTATCATCCGGGTAGCCAATC 59.739 47.826 12.31 0.00 0.00 2.67
2785 2980 0.693049 ATCATCCGGGTAGCCAATCC 59.307 55.000 12.31 0.00 0.00 3.01
2786 2981 1.301716 CATCCGGGTAGCCAATCCG 60.302 63.158 12.31 1.35 43.05 4.18
2787 2982 3.178540 ATCCGGGTAGCCAATCCGC 62.179 63.158 12.31 0.00 42.18 5.54
2788 2983 4.929707 CCGGGTAGCCAATCCGCC 62.930 72.222 12.31 0.00 42.18 6.13
2790 2985 4.929707 GGGTAGCCAATCCGCCGG 62.930 72.222 5.96 0.00 0.00 6.13
2791 2986 4.929707 GGTAGCCAATCCGCCGGG 62.930 72.222 1.90 0.00 0.00 5.73
2792 2987 4.171103 GTAGCCAATCCGCCGGGT 62.171 66.667 1.90 0.00 36.79 5.28
2793 2988 2.444329 TAGCCAATCCGCCGGGTA 60.444 61.111 1.90 0.00 34.19 3.69
2794 2989 2.504274 TAGCCAATCCGCCGGGTAG 61.504 63.158 1.90 0.00 34.19 3.18
2796 2991 4.169696 CCAATCCGCCGGGTAGCA 62.170 66.667 1.90 0.00 33.83 3.49
2797 2992 2.588877 CAATCCGCCGGGTAGCAG 60.589 66.667 1.90 0.00 33.83 4.24
2798 2993 4.547367 AATCCGCCGGGTAGCAGC 62.547 66.667 1.90 0.00 33.83 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.421751 TGTTTCTTCGTTGGTCCCAA 57.578 45.000 0.00 0.00 0.00 4.12
9 10 2.649531 ATGTTTCTTCGTTGGTCCCA 57.350 45.000 0.00 0.00 0.00 4.37
10 11 3.119955 GCTTATGTTTCTTCGTTGGTCCC 60.120 47.826 0.00 0.00 0.00 4.46
11 12 3.500680 TGCTTATGTTTCTTCGTTGGTCC 59.499 43.478 0.00 0.00 0.00 4.46
12 13 4.742438 TGCTTATGTTTCTTCGTTGGTC 57.258 40.909 0.00 0.00 0.00 4.02
13 14 4.759693 TGATGCTTATGTTTCTTCGTTGGT 59.240 37.500 0.00 0.00 0.00 3.67
14 15 5.088739 GTGATGCTTATGTTTCTTCGTTGG 58.911 41.667 0.00 0.00 0.00 3.77
15 16 5.791974 CAGTGATGCTTATGTTTCTTCGTTG 59.208 40.000 0.00 0.00 0.00 4.10
16 17 5.700832 TCAGTGATGCTTATGTTTCTTCGTT 59.299 36.000 0.00 0.00 0.00 3.85
17 18 5.237815 TCAGTGATGCTTATGTTTCTTCGT 58.762 37.500 0.00 0.00 0.00 3.85
18 19 5.784750 TCAGTGATGCTTATGTTTCTTCG 57.215 39.130 0.00 0.00 0.00 3.79
19 20 7.185453 GTGATCAGTGATGCTTATGTTTCTTC 58.815 38.462 11.20 0.00 0.00 2.87
20 21 6.094603 GGTGATCAGTGATGCTTATGTTTCTT 59.905 38.462 11.20 0.00 0.00 2.52
21 22 5.587844 GGTGATCAGTGATGCTTATGTTTCT 59.412 40.000 11.20 0.00 0.00 2.52
22 23 5.220931 GGGTGATCAGTGATGCTTATGTTTC 60.221 44.000 11.20 0.00 0.00 2.78
23 24 4.641989 GGGTGATCAGTGATGCTTATGTTT 59.358 41.667 11.20 0.00 0.00 2.83
24 25 4.202441 GGGTGATCAGTGATGCTTATGTT 58.798 43.478 11.20 0.00 0.00 2.71
25 26 3.434167 GGGGTGATCAGTGATGCTTATGT 60.434 47.826 11.20 0.00 0.00 2.29
26 27 3.144506 GGGGTGATCAGTGATGCTTATG 58.855 50.000 11.20 0.00 0.00 1.90
27 28 2.779430 TGGGGTGATCAGTGATGCTTAT 59.221 45.455 11.20 0.00 0.00 1.73
28 29 2.195727 TGGGGTGATCAGTGATGCTTA 58.804 47.619 11.20 0.00 0.00 3.09
29 30 0.994247 TGGGGTGATCAGTGATGCTT 59.006 50.000 11.20 0.00 0.00 3.91
30 31 1.219773 ATGGGGTGATCAGTGATGCT 58.780 50.000 11.20 0.00 0.00 3.79
31 32 2.936919 TATGGGGTGATCAGTGATGC 57.063 50.000 11.20 3.05 0.00 3.91
32 33 6.298361 TGTATTTATGGGGTGATCAGTGATG 58.702 40.000 11.20 0.00 0.00 3.07
33 34 6.101734 ACTGTATTTATGGGGTGATCAGTGAT 59.898 38.462 4.98 4.98 33.37 3.06
34 35 5.428457 ACTGTATTTATGGGGTGATCAGTGA 59.572 40.000 0.00 0.00 33.37 3.41
35 36 5.684704 ACTGTATTTATGGGGTGATCAGTG 58.315 41.667 0.00 0.00 33.37 3.66
36 37 5.667626 AGACTGTATTTATGGGGTGATCAGT 59.332 40.000 0.00 0.00 36.54 3.41
37 38 6.179906 AGACTGTATTTATGGGGTGATCAG 57.820 41.667 0.00 0.00 0.00 2.90
38 39 5.665360 TGAGACTGTATTTATGGGGTGATCA 59.335 40.000 0.00 0.00 0.00 2.92
39 40 5.992217 GTGAGACTGTATTTATGGGGTGATC 59.008 44.000 0.00 0.00 0.00 2.92
40 41 5.428457 TGTGAGACTGTATTTATGGGGTGAT 59.572 40.000 0.00 0.00 0.00 3.06
41 42 4.780554 TGTGAGACTGTATTTATGGGGTGA 59.219 41.667 0.00 0.00 0.00 4.02
42 43 5.097742 TGTGAGACTGTATTTATGGGGTG 57.902 43.478 0.00 0.00 0.00 4.61
43 44 5.772393 TTGTGAGACTGTATTTATGGGGT 57.228 39.130 0.00 0.00 0.00 4.95
44 45 5.943416 TGTTTGTGAGACTGTATTTATGGGG 59.057 40.000 0.00 0.00 0.00 4.96
45 46 7.040755 TGTTGTTTGTGAGACTGTATTTATGGG 60.041 37.037 0.00 0.00 0.00 4.00
46 47 7.803189 GTGTTGTTTGTGAGACTGTATTTATGG 59.197 37.037 0.00 0.00 0.00 2.74
47 48 7.803189 GGTGTTGTTTGTGAGACTGTATTTATG 59.197 37.037 0.00 0.00 0.00 1.90
48 49 7.040686 GGGTGTTGTTTGTGAGACTGTATTTAT 60.041 37.037 0.00 0.00 0.00 1.40
49 50 6.261381 GGGTGTTGTTTGTGAGACTGTATTTA 59.739 38.462 0.00 0.00 0.00 1.40
50 51 5.067283 GGGTGTTGTTTGTGAGACTGTATTT 59.933 40.000 0.00 0.00 0.00 1.40
51 52 4.578928 GGGTGTTGTTTGTGAGACTGTATT 59.421 41.667 0.00 0.00 0.00 1.89
52 53 4.134563 GGGTGTTGTTTGTGAGACTGTAT 58.865 43.478 0.00 0.00 0.00 2.29
53 54 3.537580 GGGTGTTGTTTGTGAGACTGTA 58.462 45.455 0.00 0.00 0.00 2.74
54 55 2.365582 GGGTGTTGTTTGTGAGACTGT 58.634 47.619 0.00 0.00 0.00 3.55
55 56 1.676006 GGGGTGTTGTTTGTGAGACTG 59.324 52.381 0.00 0.00 0.00 3.51
56 57 1.283613 TGGGGTGTTGTTTGTGAGACT 59.716 47.619 0.00 0.00 0.00 3.24
57 58 1.757682 TGGGGTGTTGTTTGTGAGAC 58.242 50.000 0.00 0.00 0.00 3.36
58 59 2.516227 TTGGGGTGTTGTTTGTGAGA 57.484 45.000 0.00 0.00 0.00 3.27
59 60 3.194542 TCTTTTGGGGTGTTGTTTGTGAG 59.805 43.478 0.00 0.00 0.00 3.51
60 61 3.165875 TCTTTTGGGGTGTTGTTTGTGA 58.834 40.909 0.00 0.00 0.00 3.58
61 62 3.601443 TCTTTTGGGGTGTTGTTTGTG 57.399 42.857 0.00 0.00 0.00 3.33
62 63 4.019771 ACATTCTTTTGGGGTGTTGTTTGT 60.020 37.500 0.00 0.00 0.00 2.83
63 64 4.512484 ACATTCTTTTGGGGTGTTGTTTG 58.488 39.130 0.00 0.00 0.00 2.93
64 65 4.679372 CGACATTCTTTTGGGGTGTTGTTT 60.679 41.667 0.00 0.00 0.00 2.83
65 66 3.181480 CGACATTCTTTTGGGGTGTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
66 67 2.360801 CGACATTCTTTTGGGGTGTTGT 59.639 45.455 0.00 0.00 0.00 3.32
67 68 2.862140 GCGACATTCTTTTGGGGTGTTG 60.862 50.000 0.00 0.00 0.00 3.33
68 69 1.339929 GCGACATTCTTTTGGGGTGTT 59.660 47.619 0.00 0.00 0.00 3.32
69 70 0.958822 GCGACATTCTTTTGGGGTGT 59.041 50.000 0.00 0.00 0.00 4.16
70 71 0.958091 TGCGACATTCTTTTGGGGTG 59.042 50.000 0.00 0.00 0.00 4.61
71 72 1.698506 TTGCGACATTCTTTTGGGGT 58.301 45.000 0.00 0.00 0.00 4.95
72 73 2.810439 TTTGCGACATTCTTTTGGGG 57.190 45.000 0.00 0.00 0.00 4.96
73 74 5.469479 AGTATTTTGCGACATTCTTTTGGG 58.531 37.500 0.00 0.00 0.00 4.12
74 75 7.305474 AGTAGTATTTTGCGACATTCTTTTGG 58.695 34.615 0.00 0.00 0.00 3.28
75 76 7.481798 GGAGTAGTATTTTGCGACATTCTTTTG 59.518 37.037 0.00 0.00 0.00 2.44
76 77 7.361799 GGGAGTAGTATTTTGCGACATTCTTTT 60.362 37.037 0.00 0.00 0.00 2.27
77 78 6.093633 GGGAGTAGTATTTTGCGACATTCTTT 59.906 38.462 0.00 0.00 0.00 2.52
78 79 5.585047 GGGAGTAGTATTTTGCGACATTCTT 59.415 40.000 0.00 0.00 0.00 2.52
79 80 5.104900 AGGGAGTAGTATTTTGCGACATTCT 60.105 40.000 0.00 0.00 0.00 2.40
80 81 5.116882 AGGGAGTAGTATTTTGCGACATTC 58.883 41.667 0.00 0.00 0.00 2.67
81 82 5.099042 AGGGAGTAGTATTTTGCGACATT 57.901 39.130 0.00 0.00 0.00 2.71
82 83 4.443034 GGAGGGAGTAGTATTTTGCGACAT 60.443 45.833 0.00 0.00 0.00 3.06
83 84 3.118884 GGAGGGAGTAGTATTTTGCGACA 60.119 47.826 0.00 0.00 0.00 4.35
84 85 3.455327 GGAGGGAGTAGTATTTTGCGAC 58.545 50.000 0.00 0.00 0.00 5.19
85 86 2.100252 CGGAGGGAGTAGTATTTTGCGA 59.900 50.000 0.00 0.00 0.00 5.10
86 87 2.159142 ACGGAGGGAGTAGTATTTTGCG 60.159 50.000 0.00 0.00 0.00 4.85
87 88 3.455327 GACGGAGGGAGTAGTATTTTGC 58.545 50.000 0.00 0.00 0.00 3.68
88 89 3.490419 CGGACGGAGGGAGTAGTATTTTG 60.490 52.174 0.00 0.00 0.00 2.44
89 90 2.692041 CGGACGGAGGGAGTAGTATTTT 59.308 50.000 0.00 0.00 0.00 1.82
90 91 2.305009 CGGACGGAGGGAGTAGTATTT 58.695 52.381 0.00 0.00 0.00 1.40
91 92 1.478288 CCGGACGGAGGGAGTAGTATT 60.478 57.143 4.40 0.00 37.50 1.89
92 93 0.110104 CCGGACGGAGGGAGTAGTAT 59.890 60.000 4.40 0.00 37.50 2.12
93 94 0.982852 TCCGGACGGAGGGAGTAGTA 60.983 60.000 9.76 0.00 39.76 1.82
94 95 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
95 96 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
96 97 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
97 98 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
98 99 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
99 100 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
100 101 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
101 102 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
102 103 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
103 104 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
104 105 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
105 106 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
106 107 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
107 108 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
108 109 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
109 110 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
110 111 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
114 115 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
116 117 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
117 118 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
119 120 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
120 121 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
141 142 9.277783 GGATGCATCTACAACTAAAATACATCT 57.722 33.333 25.28 0.00 31.89 2.90
142 143 9.056005 TGGATGCATCTACAACTAAAATACATC 57.944 33.333 25.28 3.59 0.00 3.06
143 144 8.978874 TGGATGCATCTACAACTAAAATACAT 57.021 30.769 25.28 0.00 0.00 2.29
144 145 8.978874 ATGGATGCATCTACAACTAAAATACA 57.021 30.769 25.28 10.32 0.00 2.29
147 148 9.807649 GAAAATGGATGCATCTACAACTAAAAT 57.192 29.630 25.28 0.00 0.00 1.82
148 149 8.801299 TGAAAATGGATGCATCTACAACTAAAA 58.199 29.630 25.28 0.20 0.00 1.52
149 150 8.347004 TGAAAATGGATGCATCTACAACTAAA 57.653 30.769 25.28 1.63 0.00 1.85
150 151 7.936496 TGAAAATGGATGCATCTACAACTAA 57.064 32.000 25.28 3.19 0.00 2.24
151 152 7.229306 GGATGAAAATGGATGCATCTACAACTA 59.771 37.037 25.28 8.38 37.77 2.24
152 153 6.040166 GGATGAAAATGGATGCATCTACAACT 59.960 38.462 25.28 6.11 37.77 3.16
153 154 6.183360 TGGATGAAAATGGATGCATCTACAAC 60.183 38.462 25.28 12.22 37.77 3.32
154 155 5.892686 TGGATGAAAATGGATGCATCTACAA 59.107 36.000 25.28 10.04 37.77 2.41
155 156 5.447757 TGGATGAAAATGGATGCATCTACA 58.552 37.500 25.28 16.33 37.77 2.74
156 157 6.585695 ATGGATGAAAATGGATGCATCTAC 57.414 37.500 25.28 11.04 37.77 2.59
157 158 7.606135 AAATGGATGAAAATGGATGCATCTA 57.394 32.000 25.28 20.79 37.77 1.98
158 159 6.494666 AAATGGATGAAAATGGATGCATCT 57.505 33.333 25.28 5.84 37.77 2.90
159 160 8.665643 TTAAAATGGATGAAAATGGATGCATC 57.334 30.769 18.81 18.81 37.11 3.91
160 161 9.062524 CATTAAAATGGATGAAAATGGATGCAT 57.937 29.630 0.00 0.00 32.53 3.96
161 162 8.047911 ACATTAAAATGGATGAAAATGGATGCA 58.952 29.630 7.56 0.00 40.70 3.96
162 163 8.441312 ACATTAAAATGGATGAAAATGGATGC 57.559 30.769 7.56 0.00 40.70 3.91
163 164 9.602568 TGACATTAAAATGGATGAAAATGGATG 57.397 29.630 7.56 0.00 40.70 3.51
165 166 9.656040 CTTGACATTAAAATGGATGAAAATGGA 57.344 29.630 7.56 0.00 40.70 3.41
166 167 9.439500 ACTTGACATTAAAATGGATGAAAATGG 57.561 29.630 7.56 0.00 40.70 3.16
173 174 9.236691 CGGAAATACTTGACATTAAAATGGATG 57.763 33.333 7.56 0.00 40.70 3.51
174 175 8.413229 CCGGAAATACTTGACATTAAAATGGAT 58.587 33.333 0.00 0.00 40.70 3.41
175 176 7.612244 TCCGGAAATACTTGACATTAAAATGGA 59.388 33.333 0.00 0.00 40.70 3.41
176 177 7.700656 GTCCGGAAATACTTGACATTAAAATGG 59.299 37.037 5.23 0.00 40.70 3.16
177 178 7.428183 CGTCCGGAAATACTTGACATTAAAATG 59.572 37.037 5.23 1.13 42.10 2.32
178 179 7.414762 CCGTCCGGAAATACTTGACATTAAAAT 60.415 37.037 5.23 0.00 37.50 1.82
179 180 6.128227 CCGTCCGGAAATACTTGACATTAAAA 60.128 38.462 5.23 0.00 37.50 1.52
180 181 5.352016 CCGTCCGGAAATACTTGACATTAAA 59.648 40.000 5.23 0.00 37.50 1.52
181 182 4.871557 CCGTCCGGAAATACTTGACATTAA 59.128 41.667 5.23 0.00 37.50 1.40
182 183 4.160065 TCCGTCCGGAAATACTTGACATTA 59.840 41.667 5.23 0.00 42.05 1.90
183 184 3.055675 TCCGTCCGGAAATACTTGACATT 60.056 43.478 5.23 0.00 42.05 2.71
184 185 2.498481 TCCGTCCGGAAATACTTGACAT 59.502 45.455 5.23 0.00 42.05 3.06
185 186 1.894466 TCCGTCCGGAAATACTTGACA 59.106 47.619 5.23 0.00 42.05 3.58
186 187 2.537401 CTCCGTCCGGAAATACTTGAC 58.463 52.381 5.23 0.00 44.66 3.18
187 188 1.479323 CCTCCGTCCGGAAATACTTGA 59.521 52.381 5.23 0.00 44.66 3.02
188 189 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
189 190 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
190 191 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
191 192 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
192 193 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
193 194 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
194 195 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
195 196 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
196 197 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
197 198 1.664321 CTTGTACTCCCTCCGTCCGG 61.664 65.000 0.00 0.00 0.00 5.14
198 199 0.679002 TCTTGTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
199 200 0.816373 GTCTTGTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 0.00 4.79
200 201 1.542492 TGTCTTGTACTCCCTCCGTC 58.458 55.000 0.00 0.00 0.00 4.79
201 202 1.893801 CTTGTCTTGTACTCCCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
202 203 2.168496 TCTTGTCTTGTACTCCCTCCG 58.832 52.381 0.00 0.00 0.00 4.63
203 204 3.680196 GCATCTTGTCTTGTACTCCCTCC 60.680 52.174 0.00 0.00 0.00 4.30
204 205 3.055819 TGCATCTTGTCTTGTACTCCCTC 60.056 47.826 0.00 0.00 0.00 4.30
205 206 2.906389 TGCATCTTGTCTTGTACTCCCT 59.094 45.455 0.00 0.00 0.00 4.20
206 207 3.334583 TGCATCTTGTCTTGTACTCCC 57.665 47.619 0.00 0.00 0.00 4.30
207 208 5.689383 TTTTGCATCTTGTCTTGTACTCC 57.311 39.130 0.00 0.00 0.00 3.85
208 209 5.621228 CGTTTTTGCATCTTGTCTTGTACTC 59.379 40.000 0.00 0.00 0.00 2.59
221 222 5.513495 TCTGTGTTGTTTACGTTTTTGCATC 59.487 36.000 0.00 0.00 0.00 3.91
222 223 5.403246 TCTGTGTTGTTTACGTTTTTGCAT 58.597 33.333 0.00 0.00 0.00 3.96
223 224 4.795268 TCTGTGTTGTTTACGTTTTTGCA 58.205 34.783 0.00 0.00 0.00 4.08
224 225 5.343860 AGTTCTGTGTTGTTTACGTTTTTGC 59.656 36.000 0.00 0.00 0.00 3.68
225 226 6.921332 AGTTCTGTGTTGTTTACGTTTTTG 57.079 33.333 0.00 0.00 0.00 2.44
226 227 9.460906 TTTTAGTTCTGTGTTGTTTACGTTTTT 57.539 25.926 0.00 0.00 0.00 1.94
299 300 1.211709 GCGCCTGCGGTTATGTTTT 59.788 52.632 13.96 0.00 40.19 2.43
300 301 2.696759 GGCGCCTGCGGTTATGTTT 61.697 57.895 22.15 0.00 44.10 2.83
301 302 3.131478 GGCGCCTGCGGTTATGTT 61.131 61.111 22.15 0.00 44.10 2.71
303 304 4.856801 AGGGCGCCTGCGGTTATG 62.857 66.667 28.56 0.00 44.10 1.90
304 305 3.638592 AAAGGGCGCCTGCGGTTAT 62.639 57.895 28.56 1.11 44.10 1.89
305 306 3.853698 AAAAGGGCGCCTGCGGTTA 62.854 57.895 28.56 0.00 44.10 2.85
308 309 4.419939 GAAAAAGGGCGCCTGCGG 62.420 66.667 28.56 0.00 44.10 5.69
309 310 1.582610 TTAGAAAAAGGGCGCCTGCG 61.583 55.000 28.56 7.26 44.10 5.18
310 311 0.171231 CTTAGAAAAAGGGCGCCTGC 59.829 55.000 28.56 11.04 41.71 4.85
311 312 0.171231 GCTTAGAAAAAGGGCGCCTG 59.829 55.000 28.56 4.97 32.13 4.85
312 313 1.305930 CGCTTAGAAAAAGGGCGCCT 61.306 55.000 28.56 9.77 39.42 5.52
313 314 1.136774 CGCTTAGAAAAAGGGCGCC 59.863 57.895 21.18 21.18 39.42 6.53
314 315 0.179197 GTCGCTTAGAAAAAGGGCGC 60.179 55.000 0.00 0.00 44.51 6.53
315 316 0.094730 CGTCGCTTAGAAAAAGGGCG 59.905 55.000 0.00 0.00 45.93 6.13
316 317 1.393883 CTCGTCGCTTAGAAAAAGGGC 59.606 52.381 0.00 0.00 0.00 5.19
319 320 3.123116 GGTTCCTCGTCGCTTAGAAAAAG 59.877 47.826 0.00 0.00 0.00 2.27
333 334 1.234615 ATGTGCGGTTTGGTTCCTCG 61.235 55.000 0.00 0.00 0.00 4.63
336 337 2.365582 AGATATGTGCGGTTTGGTTCC 58.634 47.619 0.00 0.00 0.00 3.62
361 365 2.485302 GGGGCACACTTCAAAGCAAAAT 60.485 45.455 0.00 0.00 0.00 1.82
365 371 0.685785 TTGGGGCACACTTCAAAGCA 60.686 50.000 0.00 0.00 0.00 3.91
804 819 4.693915 TTGGGGAGGGGAGGGGTG 62.694 72.222 0.00 0.00 0.00 4.61
805 820 2.765068 AATTTGGGGAGGGGAGGGGT 62.765 60.000 0.00 0.00 0.00 4.95
807 822 0.325577 CAAATTTGGGGAGGGGAGGG 60.326 60.000 10.49 0.00 0.00 4.30
936 957 2.076597 AACCCTAACACCCACTGCCC 62.077 60.000 0.00 0.00 0.00 5.36
937 958 0.178973 AAACCCTAACACCCACTGCC 60.179 55.000 0.00 0.00 0.00 4.85
968 1002 2.680841 GGACCAAAGCAAACCAAAAACC 59.319 45.455 0.00 0.00 0.00 3.27
969 1003 3.605634 AGGACCAAAGCAAACCAAAAAC 58.394 40.909 0.00 0.00 0.00 2.43
970 1004 3.990959 AGGACCAAAGCAAACCAAAAA 57.009 38.095 0.00 0.00 0.00 1.94
971 1005 5.454045 GGATTAGGACCAAAGCAAACCAAAA 60.454 40.000 0.00 0.00 0.00 2.44
972 1006 4.039852 GGATTAGGACCAAAGCAAACCAAA 59.960 41.667 0.00 0.00 0.00 3.28
973 1007 3.576550 GGATTAGGACCAAAGCAAACCAA 59.423 43.478 0.00 0.00 0.00 3.67
974 1008 3.161866 GGATTAGGACCAAAGCAAACCA 58.838 45.455 0.00 0.00 0.00 3.67
975 1009 2.163613 CGGATTAGGACCAAAGCAAACC 59.836 50.000 0.00 0.00 0.00 3.27
976 1010 2.163613 CCGGATTAGGACCAAAGCAAAC 59.836 50.000 0.00 0.00 0.00 2.93
977 1011 2.442413 CCGGATTAGGACCAAAGCAAA 58.558 47.619 0.00 0.00 0.00 3.68
978 1012 1.953311 GCCGGATTAGGACCAAAGCAA 60.953 52.381 5.05 0.00 0.00 3.91
979 1013 0.393808 GCCGGATTAGGACCAAAGCA 60.394 55.000 5.05 0.00 0.00 3.91
980 1014 1.436983 CGCCGGATTAGGACCAAAGC 61.437 60.000 5.05 0.00 0.00 3.51
981 1015 0.177141 TCGCCGGATTAGGACCAAAG 59.823 55.000 5.05 0.00 0.00 2.77
982 1016 0.834612 ATCGCCGGATTAGGACCAAA 59.165 50.000 5.05 0.00 0.00 3.28
983 1017 0.105964 CATCGCCGGATTAGGACCAA 59.894 55.000 5.05 0.00 0.00 3.67
984 1018 0.757561 TCATCGCCGGATTAGGACCA 60.758 55.000 5.05 0.00 0.00 4.02
985 1019 0.391597 TTCATCGCCGGATTAGGACC 59.608 55.000 5.05 0.00 0.00 4.46
986 1020 1.499049 GTTCATCGCCGGATTAGGAC 58.501 55.000 5.05 0.00 0.00 3.85
987 1021 0.031585 CGTTCATCGCCGGATTAGGA 59.968 55.000 5.05 0.00 0.00 2.94
988 1022 2.517598 CGTTCATCGCCGGATTAGG 58.482 57.895 5.05 0.00 0.00 2.69
1933 2025 6.957020 AGTAATAACTGGCTCTAGGATGCTAT 59.043 38.462 0.00 0.00 33.57 2.97
1946 2038 4.164413 AGGGAAGGAAGAGTAATAACTGGC 59.836 45.833 0.00 0.00 35.56 4.85
1970 2069 0.319900 CGGACTGCTATGGGGATTCG 60.320 60.000 0.00 0.00 0.00 3.34
1996 2095 1.003118 TGGCTACCTGATGACACAACC 59.997 52.381 0.00 0.00 0.00 3.77
2032 2131 2.864097 GCTGCTACGACTACATGATGGG 60.864 54.545 0.00 0.00 0.00 4.00
2034 2133 3.084070 TGCTGCTACGACTACATGATG 57.916 47.619 0.00 0.00 0.00 3.07
2035 2134 4.327982 AATGCTGCTACGACTACATGAT 57.672 40.909 0.00 0.00 0.00 2.45
2036 2135 3.801114 AATGCTGCTACGACTACATGA 57.199 42.857 0.00 0.00 0.00 3.07
2061 2160 3.312736 ACATTGGTTTGGTTGACTCCT 57.687 42.857 0.00 0.00 0.00 3.69
2062 2161 4.400529 AAACATTGGTTTGGTTGACTCC 57.599 40.909 0.00 0.00 45.22 3.85
2063 2162 5.415221 TGAAAACATTGGTTTGGTTGACTC 58.585 37.500 3.99 0.00 46.20 3.36
2065 2164 5.584251 ACATGAAAACATTGGTTTGGTTGAC 59.416 36.000 3.99 0.00 46.20 3.18
2066 2165 5.738909 ACATGAAAACATTGGTTTGGTTGA 58.261 33.333 3.99 0.00 46.20 3.18
2070 2169 7.153985 ACATCTACATGAAAACATTGGTTTGG 58.846 34.615 3.99 0.00 39.06 3.28
2072 2171 9.077885 AGTACATCTACATGAAAACATTGGTTT 57.922 29.630 0.00 0.00 39.94 3.27
2075 2183 8.338259 GCTAGTACATCTACATGAAAACATTGG 58.662 37.037 0.00 0.00 33.72 3.16
2082 2190 5.847111 ACCGCTAGTACATCTACATGAAA 57.153 39.130 0.00 0.00 33.72 2.69
2155 2266 0.032815 GGATCTAGAGGAACGCTGGC 59.967 60.000 0.00 0.00 40.01 4.85
2156 2267 1.403814 TGGATCTAGAGGAACGCTGG 58.596 55.000 0.00 0.00 40.01 4.85
2157 2268 2.029470 GGATGGATCTAGAGGAACGCTG 60.029 54.545 0.00 0.00 40.01 5.18
2158 2269 2.243810 GGATGGATCTAGAGGAACGCT 58.756 52.381 0.00 0.00 43.89 5.07
2223 2341 5.283294 TGTTCAGAATCACAACAAATGCTG 58.717 37.500 0.00 0.00 0.00 4.41
2292 2413 2.154567 AGCATTTGGTGAGCATGGAT 57.845 45.000 0.00 0.00 0.00 3.41
2410 2544 2.539688 GCCAGCACAGCAAAAACTAAAC 59.460 45.455 0.00 0.00 0.00 2.01
2506 2673 1.509787 CGAGCCGCAATTCAACACG 60.510 57.895 0.00 0.00 0.00 4.49
2508 2675 2.976840 GCCGAGCCGCAATTCAACA 61.977 57.895 0.00 0.00 0.00 3.33
2532 2699 2.352422 GACCTGCATGCCTGACCA 59.648 61.111 16.68 0.00 0.00 4.02
2537 2704 1.847798 TTAACCGGACCTGCATGCCT 61.848 55.000 16.68 0.00 0.00 4.75
2539 2706 1.654023 GGTTAACCGGACCTGCATGC 61.654 60.000 9.46 11.82 34.27 4.06
2542 2709 0.402504 AATGGTTAACCGGACCTGCA 59.597 50.000 19.65 0.00 39.43 4.41
2553 2721 1.828979 GCCCAGTTCGGAATGGTTAA 58.171 50.000 9.78 0.00 36.56 2.01
2554 2722 0.391927 CGCCCAGTTCGGAATGGTTA 60.392 55.000 9.78 0.00 36.56 2.85
2575 2751 4.947147 CCACCACCACCACCACCG 62.947 72.222 0.00 0.00 0.00 4.94
2659 2854 1.970917 GCCAAGATTCTGTCGCCACG 61.971 60.000 0.00 0.00 0.00 4.94
2663 2858 1.661341 AGATGCCAAGATTCTGTCGC 58.339 50.000 0.00 0.00 0.00 5.19
2717 2912 1.298953 AAAAGCTCCTGGATAGCCCA 58.701 50.000 0.00 0.00 44.25 5.36
2718 2913 2.443958 AAAAAGCTCCTGGATAGCCC 57.556 50.000 0.00 0.00 41.02 5.19
2734 2929 9.010029 ACATTAATAAGCCGAGAAGAAGAAAAA 57.990 29.630 0.00 0.00 0.00 1.94
2735 2930 8.561738 ACATTAATAAGCCGAGAAGAAGAAAA 57.438 30.769 0.00 0.00 0.00 2.29
2736 2931 8.561738 AACATTAATAAGCCGAGAAGAAGAAA 57.438 30.769 0.00 0.00 0.00 2.52
2737 2932 8.561738 AAACATTAATAAGCCGAGAAGAAGAA 57.438 30.769 0.00 0.00 0.00 2.52
2738 2933 8.041323 AGAAACATTAATAAGCCGAGAAGAAGA 58.959 33.333 0.00 0.00 0.00 2.87
2739 2934 8.202745 AGAAACATTAATAAGCCGAGAAGAAG 57.797 34.615 0.00 0.00 0.00 2.85
2740 2935 8.561738 AAGAAACATTAATAAGCCGAGAAGAA 57.438 30.769 0.00 0.00 0.00 2.52
2741 2936 9.832445 ATAAGAAACATTAATAAGCCGAGAAGA 57.168 29.630 0.00 0.00 0.00 2.87
2743 2938 9.607988 TGATAAGAAACATTAATAAGCCGAGAA 57.392 29.630 0.00 0.00 0.00 2.87
2744 2939 9.778741 ATGATAAGAAACATTAATAAGCCGAGA 57.221 29.630 0.00 0.00 0.00 4.04
2746 2941 8.999431 GGATGATAAGAAACATTAATAAGCCGA 58.001 33.333 0.00 0.00 0.00 5.54
2747 2942 7.957484 CGGATGATAAGAAACATTAATAAGCCG 59.043 37.037 0.00 0.00 0.00 5.52
2748 2943 8.237267 CCGGATGATAAGAAACATTAATAAGCC 58.763 37.037 0.00 0.00 0.00 4.35
2749 2944 8.237267 CCCGGATGATAAGAAACATTAATAAGC 58.763 37.037 0.73 0.00 0.00 3.09
2750 2945 9.284968 ACCCGGATGATAAGAAACATTAATAAG 57.715 33.333 0.73 0.00 0.00 1.73
2752 2947 9.938280 CTACCCGGATGATAAGAAACATTAATA 57.062 33.333 0.73 0.00 0.00 0.98
2753 2948 7.390718 GCTACCCGGATGATAAGAAACATTAAT 59.609 37.037 0.73 0.00 0.00 1.40
2754 2949 6.708949 GCTACCCGGATGATAAGAAACATTAA 59.291 38.462 0.73 0.00 0.00 1.40
2755 2950 6.228258 GCTACCCGGATGATAAGAAACATTA 58.772 40.000 0.73 0.00 0.00 1.90
2756 2951 5.063880 GCTACCCGGATGATAAGAAACATT 58.936 41.667 0.73 0.00 0.00 2.71
2757 2952 4.505039 GGCTACCCGGATGATAAGAAACAT 60.505 45.833 0.73 0.00 0.00 2.71
2758 2953 3.181458 GGCTACCCGGATGATAAGAAACA 60.181 47.826 0.73 0.00 0.00 2.83
2759 2954 3.181458 TGGCTACCCGGATGATAAGAAAC 60.181 47.826 0.73 0.00 0.00 2.78
2760 2955 3.042682 TGGCTACCCGGATGATAAGAAA 58.957 45.455 0.73 0.00 0.00 2.52
2761 2956 2.684943 TGGCTACCCGGATGATAAGAA 58.315 47.619 0.73 0.00 0.00 2.52
2762 2957 2.391926 TGGCTACCCGGATGATAAGA 57.608 50.000 0.73 0.00 0.00 2.10
2763 2958 3.600388 GATTGGCTACCCGGATGATAAG 58.400 50.000 0.73 0.00 0.00 1.73
2764 2959 2.304761 GGATTGGCTACCCGGATGATAA 59.695 50.000 0.73 0.00 0.00 1.75
2765 2960 1.906574 GGATTGGCTACCCGGATGATA 59.093 52.381 0.73 0.00 0.00 2.15
2766 2961 0.693049 GGATTGGCTACCCGGATGAT 59.307 55.000 0.73 0.00 0.00 2.45
2767 2962 1.754380 CGGATTGGCTACCCGGATGA 61.754 60.000 0.73 0.00 39.59 2.92
2768 2963 1.301716 CGGATTGGCTACCCGGATG 60.302 63.158 0.73 0.00 39.59 3.51
2769 2964 3.148084 CGGATTGGCTACCCGGAT 58.852 61.111 0.73 0.00 39.59 4.18
2770 2965 3.857038 GCGGATTGGCTACCCGGA 61.857 66.667 0.73 0.00 43.17 5.14
2771 2966 4.929707 GGCGGATTGGCTACCCGG 62.930 72.222 3.39 0.00 43.17 5.73
2773 2968 4.929707 CCGGCGGATTGGCTACCC 62.930 72.222 24.41 0.00 42.02 3.69
2774 2969 4.929707 CCCGGCGGATTGGCTACC 62.930 72.222 30.79 0.00 42.02 3.18
2775 2970 2.710724 CTACCCGGCGGATTGGCTAC 62.711 65.000 30.79 0.00 42.02 3.58
2776 2971 2.444329 TACCCGGCGGATTGGCTA 60.444 61.111 30.79 3.42 42.02 3.93
2777 2972 3.861797 CTACCCGGCGGATTGGCT 61.862 66.667 30.79 4.46 42.02 4.75
2779 2974 4.169696 TGCTACCCGGCGGATTGG 62.170 66.667 30.79 16.86 34.52 3.16
2780 2975 2.588877 CTGCTACCCGGCGGATTG 60.589 66.667 30.79 13.80 40.74 2.67
2781 2976 4.547367 GCTGCTACCCGGCGGATT 62.547 66.667 30.79 16.72 40.74 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.