>input_sequence_68366
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-------------------------------------------------------------------------ATGAACG
GCGAGATGATGATGCGGCCTCCCGTGCCGGCGCCGTACCAGGTGTGGGCGGCGGCGCTGGCG---------CAGCAGCAG
CAGCTCCCGCCGGTGGCGGAGGCGCCGCCGG---CG---GGGTTCAAGCCGGCGAGGCCCGCGTGGAAGCGGGCGGCGCG
GCAGCAGCCCGGGTGGAAGCAGCGCAAGGCCGCGGCCCAGGCGCAGGGGAGGTGGGGCGGGTCGGCGGCGCCGCGCAACA
CGACGTCGTACCTGATCCGGGCCAAGCGGGCGGGTGGCGTGGCGTCGCTGGTGTCGCCGTGCCCCGTGACGCCCGCCGTG
CTGCCGACGCCGCGGCTGTCGCCGGCGCGGGAGGTGCTGGTGGAGATGGCCAAGGAGGCGTGGGGCGTCGACGGGTACGG
CTCCATGAAGGGCCTCATCCGCCTCCGCCCCCAGGCCGCCGGCCCCGACACCGGCGACGGCGACGGCGCCGACTCGGGCT
CCGGCGAGAGCGACGTGGAGGAGCACGTGGAGGTGGAGCGCCGCCTCGACCACGACCTCAGCCGCTTCGAGATGGTGCAG
CTCCCCGCCGGGCCCGCCGGCGAGGACGA---------CGAGGACGATGACGCCCGCGCGGCCCGGCTGGAGGAGGAGAA
CCTGACCCTCCGCGCGCGGCTCTTCCTGGTGGAGCGCGACATGGCCGACCTCCGCCGCCGCCTCGTCGCCGTGGAGTCCC
TCTGCCGCGACCGCCACCGCGACGGCTGCGTCGTGGACGCCGCCCTGCCTTCCCCCGCCGAAACCGACGAGGCG---GCC
ACCGAGGACGCCATGGTACTCTGA--------------------------------------------------------
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>chr5A_1_TraesCS5A01G355200
GAGAAAGGTTGGGACCAACGAAGAAACATAAGCATCACTGATCACCCCATAAATACAGTCTCACAAACAACACCCCAAAA
GAATGTCGCAAAATACTACTCCCTCCGTCCGGAAATACTTGTCATTGAAATGGATGTATCTAGATGTATTTTAGTTGTAG
ATGCATCCATTTTCATCCATTTTAATGTCAAGTATTTCCGGACGGAGGGAGTACAAGACAAGATGCAAAAACGTAAACAA
CACAGAACTAAAAGAAGAAGAAGAAAAGATGACAACCAAACACAAAGCAAAGCAAAAAAAAAACATAACCGCAGGCGCCC
TTTTTCTAAGCGACGAGGAACCAAACCGC---ACATATCTTGCGAT--TTTGCTTTGAAGTGTGC-----CCCAACCAAA
GCCGCGAGGATGGATGGATGGATG----CGTCTCGCGGCGGCACAGCCCCTGCCGTCCGTCCAAGANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCT
CCATCTCCAACCTCCCCCCACCCCTCCCCTCCCCAAATTTGGATCAAACGAACTCGCTAAACTTAATCTCATCCTTAAAC
GCGCGGCGAACGGAATCGGATTT-GGGAGGGAC--GAGGCGTTTGGATCCCATTTTGGG---GGGCTAATCGCGGTGGGC
AGTGGGT-------------GTTAGGGTTTCGGATCTGGTCGGTTTTTGGTTTGCTTTGGTCCTAATCCGGCGATGAACG
GCGAGATGATGATGCGGCCTCCCGTGCCGGCGCCGTACCAGGTGTGGGCGGCGGCGCTGGCG---------CAGCAGCAG
CAGCTCCCGCCGGTGGCGGAGGCGCCGCCGG---CG---GGGTTCAAGCCGGCGAGGCCCGCGTGGAAGCGGGCGGCGCG
GCAGCAGCCCGGGTGGAAGCAGCGCAAGGCCGCGGCCCAGGCGCAGGGGAGGTGGGGCGGGTCGGCGGCGCCGCGCAACA
CGACGTCGTACCTGATCCGGGCCAAGCGGGCGGGTGGCGTGGCGTCGCTGGTGTCGCCGTGCCCCGTGACGCCCGCCGTG
CTGCCGACGCCGCGGCTGTCGCCGGCGCGGGAGGTGCTGGTGGAGATGGCCAAGGAGGCGTGGGGCGTCGACGGGTACGG
CTCCATGAAGGGCCTCATCCGCCTCCGCCCCCAGGCCGCCGGCCCCGACACCGGCGACGGCGACGGCGCCGACTCGGGCT
CCGGCGAGAGCGACGTGGAGGAGCACGTGGAGGTGGAGCGCCGCCTCGACCACGACCTCAGCCGCTTCGAGATGGTGCAG
CTCCCCGCCGGGCCCGCCGGCGAGGACGA---------CGAGGACGATGACGCCCGCGCGGCCCGGCTGGAGGAGGAGAA
CCTGACCCTCCGCGCGCGGCTCTTCCTGGTGGAGCGCGACATGGCCGACCTCCGCCGCCGCCTCGTCGCCGTGGAGTCCC
TCTGCCGCGACCGCCACCGCGACGGCTGCGTCGTGGACGCCGCCCTGCCTTCCCCCGCCGAAACCGACGAGGCG---GCC
ACCGAGGACGCCATGGTACTCTGACGTG----------------GCCGGCCGCCCGCACCGTGCCCTGTACATAGTTCAC
CGTCCCTT---CCTCCTCCCCCCTGTGCAGGTGTCAACAGACAGACAGATGTGAATGAAGAGTAGCCAGCAGCATCAGCA
TCAGCA------------GTTCAAATAGCATCCTAGAGCCAGTTATTACTCTTCCTTC-------CCTCGAATCCCCATA
GCAGTCCGATCTGTGGTTGTGTCATCAGGTAGCCAGATCCCCATTCCATGCCCATCATGTAGTCGTAGCAGCATTAGGAA
GGAGTCAACCA---------AACCAATGTTTTCATGTAGATGTACTAGCGGTTAACCGGCG---TCAATGGCGGGCACCG
GCGAGGAAGACGAAGACGACGCGGGGCCAGCGTTCCTCTAGATCCATCCAGTGCCTGCCAAACTCGGCAA----CTCCAG
TTATTAGTCAGTAGTAG---CAGCATTTGTTGTGATTCTGAACATGTTGT---TCCATTATTGCATTCCGCATTCTGTAC
CATTCTGTGCGCATCCATGCTCACCAAATGCTTGGCCATTGGCAGGG----GGCAGGCAGCGGCGGCGAGACCCATGGAC
GATGGATCCAGCAGCCGTGGGAGTTTTATACTAGTGCTG---------TTTTAATTTTATTTTGTTTAGTTTTTGCTGTG
CTGGCGTG------------CGA------------TTTTGGCGAGACGTGGCGTGACCAGTGGGACTCGCTCCTGTGGAT
GCGGGGGGTGGGGGTGGT---------GACGGCGTGTTGAATTGCGGCTCGGCTCGGTTGGTCAGGCATG-CAGGTCCGG
TTAA--------CCATTCCGAACTGGGCGGCGGTGGT------GGTGGTGGTGGGGCGGGTCCGAGGAAGAGGATGACCG
ACCGGGAGGGAGGCGAGTGGTTGGG-------------CATTGGCAATGGCGACGTGGCGACAGAATCTTGGCATCTTGT
GTGGAGAAGGTGCTGCCGGGCGAGAGAGCTCTGGGCTATCCAGGAGCTTTTTTCTTCTTCTCGGCTTATTAATGTTTCTT
ATCATCCGGGTAGCCAATCCGCCGGGTAGCAGCGGAGG
>chr5D_210
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-------------------------------------------------AGTACAAGAAAAAGATGCAAAACATAAACAA
CACATAACTGAAAGAAGAAGAAGAAAAGATGACAACCCAAAGCAAAGCGAAAAACACACCCGCAC------------CCT
TTTTTCTAAGCGATGAAGAACCAAACCGCCGCACCTATCTTGCGGTTCTTGGCTTTGAAGTGCCCAAGCGCCCAACCAAA
GCCGCGAGGATGGATGGATGGATGGATGCGTCTCGCGGCGGCACAACCCCTGCCGTCCGTCCAAGACACGCAACCGCACG
CGCGATCCAGGCCGTCCGCTCCTCGGGGCCGCGGATCCGGCCGTCCGACCCGCCTCGACCTCCTTTATATACCCCAGGAC
CCATCCACCG--GCCCTGCCTACGCCGTCTCTCTGTCCTGTCCTTTC---------------------------------
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----------------------------------------------------------------------------TTCT
CCAACTCCAACCTCCCCCTCT-CCTCCCCTCCCCAAATTTGGATCAAACGAACTCGCTAAACTTAATCTCATCCTTAAAC
GCGCGGCGAACGGAATCGGATTT-GGGAGGGAC--GAGGCGTTTGGATCCCATTTTGGGCGGGGGCTAATCGCGGTAAGC
AGTGGGTGATTTGGGCCGGGGTTAGGGTTTCGGATCTGGTAA---------------------TAATCCGGCGATGAACG
GCGAGATGATGATGCGGCCTCCCATGCCGGCGCCGTACCAGGTGTGGGCGGCGGCGCTGGCG---------CAGCAGCAG
CAGCTCCCGCCGGTGGCGGAGGCGCCGCCGG---CGGCGGGGTTCAAGCCGGCGAGGCCCGCGTGGAAGCGGGCGGCGCG
GCAGCAGTCCGGGTGGAAGCAGCGCAAGGCCACGGCCCAGGCGCAGGGGAGGTGGGGCGGGTCGGCGGCGCCGCGCAACA
CGACGTCGTACCTGATCCGGGCCAAGCGGGCGGGTGGCGTGGCGTCGCTGGTGTCGCCGTGCCCCGTGACGCCCGCCGTG
CTGCCGACGCCGCGGCTGTCGCCGGCGCGGGAGGTGCTGGTGGAGATGGCCAAGGAGGCGTGGGGCGTCGACGGTTACGG
CTCCATGAAGGGCCTCATCCGCCTCCGCCCCCAGGCCGCCGGCCCCGACGCCGGCGACGGCGAC---------TCGGGCT
CCGGCGAGAGCGACGTGGAGGAGCACGTGGAGGTGGAGCGCCGCCTTGACCACGACCTCAGCCGCTTCGAGATGGTGCAG
CTCCCCGCCGCGCCGGCAGGCGAGGACGA---------GGA---------CGCCCGCGCGGCCCGGCTGGAGGAGGAGAA
CCTGACCCTCCGCGCGCGGCTCTTCCTGGTGGAGCGCGACATGGCCGACCTCCGCCGCCGCCTCCTCGCCGTCGAGTCCC
TCTGCCGCGACCGCCACCGCGACGGCTGCGTCGTGGACGCCGCCCTGCCTT---CCCCAACCAGCGACGAGGCG---GCC
ACCGAGGACGCCATGGTACTCTGACGTGGCCGCCGCCGCC----GCCGGCCGCCCGCACCGTGCCCTGTACATAGCCCAC
CGTCCCTTCCTCCTCCAACACCCTGTGCAGGTGTCAACAGACAGACAGATGTGAATGAAGAGTAGCCAGCAGCATCACAA
TCAGCATCAG------CAGTTGAATTAGCATCCTAGAACCAGTTGTTACTCTTCCTTCCT----TCCTTGAATCCCCATA
GCAGTCCGATCTGTAGTTGTGTCAT----TAGCCAGATCCCCATTTCGTGTC---CATGCAGTCGTAGCAGCATTAGGAG
TCAACCAAACCAAG-CAAGCAAGCAAGGTGTTCATGTAGATGTA---GCGGTTAATCGGCGGCGTCAATGGCGGGCACCG
GCGAGGAAGACGAAGAAGACGCGGG----GCGTTCCTCCAG----ATCCAGTGCCTGCCAAACTCGGCAAACAACTCCAG
TTATTAGTCAGTAGTAG---TAGCATTTGTTGTGATTCTGAACATGTTGTTGTTCCATTATTGCA--CTGCATTCTGTTC
CATTCTGTGTGCTCCCGTGCTCACCAGATGCTTGGCCATTGGCAGGG----GACAGGCAGCGGCGGCGAGACCCATGGAC
GATGGATCCAGCAGCCGTGGGAGTTTTATACTACTACTATACTGCTGTTTTTTATTTTATTTTATTTAGTTTTTGCTGTG
CTGGCGTGCGTGCGTGCGTGCGA------------TTTTGGCGAGACGTGGCGTGACCAGTGGGACTCGCTCCTGTGGAT
GCGGGGGGTGGGGGTGGC---------GACGGTGCGTTGAG-TGCGGCTCGGCTCGGTAGGTCGGTCAGG-CAGGTCCGG
GCAACCTGATTGCCGTTCCGAACTG------GGTGGT------GGTGGTGGTGGGGCGAGTCCGAGGAAGAGGATGACCG
ACCGGGAGGGAGGCGAGTGGTTGGGTTGGGCGCTGTGGCATTGGCAATGGCGATGTGACGACAGAATCTTGGCATATTGT
GTGGAGAAGATGCTGCCGGGC-----------------------------------------------------------
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>chr5B_211
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--------------------------------------------------GTACAAGACAAAGATGCAAAGCATAAACAA
CACATAACTAA---AAGAAGAAGAAAAGATGACAGCCCAAAGCAAAGCGAAAAACACAAGCGCAC------------CCT
TTTTTGTAAGCGATGAAGAACCAAACCGCCGCACCTATCTTGCGGTTCTTGGCTTTGAAGTGCCCAAGCGCCCAACCAAA
GCCGCGA----GGATGGATGGATGGATGCGTCTCGCGGCGGCACACCCCCTGCTGTCCGTCCAAGACACGCAACCGCTGG
CGCGATCCAGGCCGTCCGCGCCTGGGGGCCACGGATCCGGCCGTCCGACGCGCGCCCGCCCCCTTTATATACCCCGGGAC
CCCTTCCCCTCTGCCCTGCCTACGCCGTCTCTCTGTCCTGTCCTTTC---------------------------------
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----------------------------------------------------------------------------TCCT
CCATCTCCAACCTCCCCCTCC-CCT---CTCCCCAAATTTGGATCAAACGAACTCGCTAAACTTAATCTCATCCTTAAAC
GCGCGGCGAACGGAATCGGATTTTGGGAGGGACGGGAGGCGTTTGGATCCCATTTTGGGCGGGGGCTAATCGCGGTAAGC
AGCGAGTGATTTGGGTCGGGGTTAGGGTTTCGGATCTGGTCA---------------------TAATCCGGCGATGAACG
GCGAGATGATGATGCGGCCTCCCATGCCTGCGCCGTACCAGGTGTGGGCGGCGGCGCTGGCGCAGCAGCAGCAGCAGCAG
CAGCTCCCGCCGGTGGCCGTGGCGGAGGCGCCGCCGGCGGGGTTCAAGCCGGCGAGGCCCGCGTGGAAGCGGGCGGCGCG
GCAGCAGCCCGGGTGGAAGCAGCGCAAGGCCGCGGCCCAGGCGCAGGGGAGGTGGGGCGGGTCGGCGGCGCCGCGCAACA
CGACGTCGTACCTGATCCGGGCCAAGCGGGCCGGGGGCGTGGCGTCGCTGGTGTCGCCGTGCCCCGTGACGCCCGCCGTG
CTGCCGACGCCGCGGCTGTCGCCGGCGCGGGAGGTGCTGGTGGAGATGGCCAAGGAGGCGTGGGGCGTCGACGGGTACGG
CTCTATGAAGGGCCTCATCCGCCTCCGCCCCCAGGCCGCCGGCCCCGACGCCGGCGACGGCGACGGCGCTGACTCGGGCT
CCGGCGAGAGCGACGTGGAGGAGCACGTGGAGGTGGAGCGCCGCCTCGACCACGACCTCAGCCGCTTCGAGATGGTGCAG
CTCCCCGCCGCGCCCGCCGGCGAGGACGACGAGGACGAGGA---------CGCCCGCGCGGCCCGGCTGGAGGAGGAGAA
CCTGACCCTCCGCGCGCGGCTCTTCCTGGTGGAGCGCGACATGGCCGACCTCCGCCGCCGCCTCGTCGCCGTCGAGTCCC
TCTGCCGCGACCGCCACCGCGACGGCTGCGTCGTCGACGCCGCCCTGCCGCCCCCCTCCAACAGCGACGAGGCGGACGCC
ACCGAGGACGCCATGGTACTCTGACGTGGCCGCCGCCGCCCCTGGCCGGCCGCCCGCACCGTGCCCTGTACATAGTTCAC
CGTCCCTTCCTCCTCCTCCCCTCTGTGCAGGTGTCAACAGACAGACAGATGTGAATGAAGAGTAGCCAGCAGCATCAGCA
TCAGCATCAGAAGCAGCAGTTCAATTAGCATCCCAGAACCAGTCATCACTCTTCCTCCCTTCCCTCCTTGAATCCCCATA
GCAGTTCGATCTGTAGTTGTGTCATCAGGTAGCCAGGTCC--ATTCCATGTC---CATGTCCTCGTAGCAGCATTAGGAG
TCAACCAAACCAATCCAAGCAAGCAATGTGTTCATGTAGATGTATTAGCGGTTAAT---CGGCGTCAATGGCGGGCACCG
GCGA---------AGAAGACGCGGG----GCGTTCCTCTAG----ATCCAGTGCCTACCAAAGTCGGCATACAACTCCAG
TCATTAGTCAGTACTAGCAGTAGCATTTGTTGTGATTCTGAACATATTGTTGCTCCATTATTGCATTCTGCATTCTGTAC
CATTCTGTGCGCGTCCATGCTCACCAGATGCTTGGCCATTGGCAGGGAGGGGACAGGCAGCGGCGGCGAGACCCATGGAT
GATGGATCCAGCAGCCGTGGGAGTTTTATACTACTATACTACTATATTTTTTTGTTTTATTTTATTTAGTTTTTGCTGTG
CTTGCGTG------------CGTGTGTGCGTGCGGTTTTGGCGAGACGTGGCGTGACCAGTGGGACTCGCTCCTGTGGAC
GCGGGGGTGGGGTGGGGTGGGGTGGTGGACGGTGCGTTGAG-TGCGGCGCGGCTTGGTAGGTCGGTCAGGTCAGGTCCGG
GCAACCTGATTGCCATTCTGAACTG------GGTGGTGGTGATGGTGGTGGTGGGGCGGGTCCGAGGAAGAGGATGACCG
ACC----GGGAGGCGAGTGGTTGGGCTGGGCGCTGTGGCGTTGGCAATGGCGATGTGACGACAGAATCTTGGCATCTTGT
GTGGAGAAGATGCTGCCGGGC-----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SSSSSS-----S-------
----S--------------------------------S--SS------S--SS-S-S--SSSSSSSSSSSSSSSSSS--S
-------------S--S-----------------S---------S-----S-----------SS----------------
---------------------------------------------S--------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
------------------SS-S----------------------------------------------------------
----------------------------------------------------------------------------SS--
-----------------------------------------SSSSSSSSSSSSSSSSSSSSSS-----------------
-----------------------S--------------------------------------------------------
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-------------------------------------------------S-------------------S----------
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----------S---------------------------S--SSSSSSSSS------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------S--S-S-S----------------
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------------------------S------------S------------------------------S-----------
--------------S-----------------------------------S-SSS------------------------S
SS-SS---S-S-----------S------S--------------S----------S------------------------
----------------S--------SSSS------------SSSS-----------------------------------
--------------------S-----------------------------------------------S-----------
------------S-------------S-------------------------S---------------------------
---------------------------------S-S--S-------------S----------S----------------
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--------------------------------S-S-----SS----------------S----S-S--S-----------
SS-----------------------SSSSSS-------------------------------------------------
-----------------------------------------------------S---S----------------------
---------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_116
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----------------TACTCCCTCCGTCCGGAAAT--------------------------------------------
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>reverse_2069
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--------------------------------------------------------------------CGAATCCCCATA
GCAGTCCG------------------------------------------------------------------------
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