Multiple sequence alignment - TraesCS5A01G350400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G350400 chr5A 100.000 2343 0 0 1 2343 553337055 553334713 0.000000e+00 4327.0
1 TraesCS5A01G350400 chr5A 100.000 441 0 0 2646 3086 553334410 553333970 0.000000e+00 815.0
2 TraesCS5A01G350400 chr5A 82.210 371 46 13 70 424 708184546 708184180 5.000000e-78 302.0
3 TraesCS5A01G350400 chr5A 75.940 266 48 13 1003 1260 552900075 552900332 4.180000e-24 122.0
4 TraesCS5A01G350400 chr5D 94.118 1190 59 7 1091 2279 438185944 438184765 0.000000e+00 1799.0
5 TraesCS5A01G350400 chr5D 89.344 366 13 9 753 1092 438186466 438186101 1.310000e-118 436.0
6 TraesCS5A01G350400 chr5B 91.160 362 22 4 1154 1507 532796224 532795865 1.660000e-132 483.0
7 TraesCS5A01G350400 chr5B 90.938 320 28 1 1784 2103 532790734 532790416 2.200000e-116 429.0
8 TraesCS5A01G350400 chr5B 93.208 265 14 1 2822 3086 532775060 532774800 1.340000e-103 387.0
9 TraesCS5A01G350400 chr5B 85.424 295 35 8 44 331 185547270 185546977 1.800000e-77 300.0
10 TraesCS5A01G350400 chr5B 91.875 160 12 1 1504 1663 532790892 532790734 4.010000e-54 222.0
11 TraesCS5A01G350400 chr5B 91.358 162 10 4 2118 2276 532776304 532776144 5.180000e-53 219.0
12 TraesCS5A01G350400 chrUn 83.150 546 70 19 72 606 28783708 28783174 2.150000e-131 479.0
13 TraesCS5A01G350400 chr2B 77.720 772 105 41 4 749 590850116 590850846 7.960000e-111 411.0
14 TraesCS5A01G350400 chr2B 85.714 126 14 3 6 130 590850021 590850143 2.500000e-26 130.0
15 TraesCS5A01G350400 chr2B 94.737 38 1 1 19 56 79035401 79035365 1.200000e-04 58.4
16 TraesCS5A01G350400 chr2D 85.714 126 15 3 6 130 502831092 502831215 2.500000e-26 130.0
17 TraesCS5A01G350400 chr2D 100.000 29 0 0 717 745 284522111 284522139 2.000000e-03 54.7
18 TraesCS5A01G350400 chr7D 83.133 83 13 1 2987 3069 84372059 84371978 1.190000e-09 75.0
19 TraesCS5A01G350400 chr7D 92.000 50 2 2 6 54 558930054 558930006 5.520000e-08 69.4
20 TraesCS5A01G350400 chr7D 97.297 37 1 0 20 56 576692548 576692584 2.570000e-06 63.9
21 TraesCS5A01G350400 chr7D 92.857 42 2 1 2992 3033 578815472 578815432 3.320000e-05 60.2
22 TraesCS5A01G350400 chr1B 79.825 114 10 7 18 130 531014201 531014302 1.540000e-08 71.3
23 TraesCS5A01G350400 chr3D 78.632 117 14 8 20 129 556839141 556839029 1.990000e-07 67.6
24 TraesCS5A01G350400 chr4A 94.737 38 1 1 19 56 626050658 626050622 1.200000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G350400 chr5A 553333970 553337055 3085 True 2571.0 4327 100.000 1 3086 2 chr5A.!!$R2 3085
1 TraesCS5A01G350400 chr5D 438184765 438186466 1701 True 1117.5 1799 91.731 753 2279 2 chr5D.!!$R1 1526
2 TraesCS5A01G350400 chr5B 532774800 532776304 1504 True 303.0 387 92.283 2118 3086 2 chr5B.!!$R3 968
3 TraesCS5A01G350400 chrUn 28783174 28783708 534 True 479.0 479 83.150 72 606 1 chrUn.!!$R1 534
4 TraesCS5A01G350400 chr2B 590850021 590850846 825 False 270.5 411 81.717 4 749 2 chr2B.!!$F1 745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 684 0.036388 TCTAGGCTTCGTGGGCTTTG 60.036 55.0 10.85 6.21 42.20 2.77 F
623 725 0.041576 TCGCGACAATACTCGATCGG 60.042 55.0 16.41 8.65 35.58 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 2077 0.165944 GGTTTCCGATGCTGTTGACG 59.834 55.0 0.0 0.0 0.00 4.35 R
2280 2572 0.179078 TGTACGTTTGGGCGTGACTT 60.179 50.0 0.0 0.0 45.33 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.746900 GCCATGGCAAAATCTGGAC 57.253 52.632 32.08 0.00 41.49 4.02
62 63 1.188863 GCCATGGCAAAATCTGGACT 58.811 50.000 32.08 0.00 41.49 3.85
63 64 2.378038 GCCATGGCAAAATCTGGACTA 58.622 47.619 32.08 0.00 41.49 2.59
65 66 3.385755 GCCATGGCAAAATCTGGACTATT 59.614 43.478 32.08 0.00 41.49 1.73
66 67 4.738541 GCCATGGCAAAATCTGGACTATTG 60.739 45.833 32.08 0.00 41.49 1.90
67 68 4.365723 CATGGCAAAATCTGGACTATTGC 58.634 43.478 0.00 0.00 44.18 3.56
68 69 3.700538 TGGCAAAATCTGGACTATTGCT 58.299 40.909 8.47 0.00 44.30 3.91
75 145 2.481441 TCTGGACTATTGCTCCATGGT 58.519 47.619 12.58 0.00 37.18 3.55
80 150 5.765510 TGGACTATTGCTCCATGGTAAAAT 58.234 37.500 12.58 11.87 32.52 1.82
82 152 6.096705 TGGACTATTGCTCCATGGTAAAATTG 59.903 38.462 12.58 12.34 32.52 2.32
112 206 9.780413 TTTTCACATGGCAAATTTTACTTTTTC 57.220 25.926 0.00 0.00 0.00 2.29
142 236 3.667360 GCAAATTTTCCATGCCAAGTCT 58.333 40.909 0.00 0.00 34.03 3.24
144 238 4.083696 GCAAATTTTCCATGCCAAGTCTTG 60.084 41.667 5.53 5.53 34.03 3.02
145 239 2.818130 TTTTCCATGCCAAGTCTTGC 57.182 45.000 7.09 3.84 0.00 4.01
146 240 1.702182 TTTCCATGCCAAGTCTTGCA 58.298 45.000 7.09 9.24 42.52 4.08
246 343 4.019860 ACTCTAGTTTGTGAGTCATGGCAT 60.020 41.667 0.00 0.00 39.04 4.40
285 382 6.861144 TGAATACATTCATGGCGATTTTTGA 58.139 32.000 0.45 0.00 41.51 2.69
289 388 8.721019 ATACATTCATGGCGATTTTTGATTTT 57.279 26.923 0.00 0.00 0.00 1.82
357 456 6.653020 TGGCAAATTCTGACACTATACAGAT 58.347 36.000 0.00 0.00 38.54 2.90
358 457 7.112122 TGGCAAATTCTGACACTATACAGATT 58.888 34.615 0.00 0.00 38.54 2.40
387 486 8.871862 GCTATGTTGCAACATTGATGATTTTTA 58.128 29.630 39.87 23.41 46.95 1.52
392 491 8.928733 GTTGCAACATTGATGATTTTTACATCT 58.071 29.630 24.52 0.00 42.89 2.90
393 492 9.491675 TTGCAACATTGATGATTTTTACATCTT 57.508 25.926 0.00 0.00 42.89 2.40
394 493 8.927721 TGCAACATTGATGATTTTTACATCTTG 58.072 29.630 0.00 0.00 42.89 3.02
417 517 8.703604 TTGAACATAGAAATGTAGCAGACTAC 57.296 34.615 0.00 0.00 45.79 2.73
418 518 7.265673 TGAACATAGAAATGTAGCAGACTACC 58.734 38.462 1.05 0.00 45.79 3.18
419 519 7.124298 TGAACATAGAAATGTAGCAGACTACCT 59.876 37.037 1.05 0.00 45.79 3.08
488 590 9.271828 CAATTAAGGGTATTTTTGTGAGCTTTT 57.728 29.630 0.00 0.00 0.00 2.27
489 591 8.831715 ATTAAGGGTATTTTTGTGAGCTTTTG 57.168 30.769 0.00 0.00 0.00 2.44
530 632 3.365535 GCCCCGTGCATCTTGTTT 58.634 55.556 0.00 0.00 40.77 2.83
531 633 1.665442 GCCCCGTGCATCTTGTTTT 59.335 52.632 0.00 0.00 40.77 2.43
532 634 0.885196 GCCCCGTGCATCTTGTTTTA 59.115 50.000 0.00 0.00 40.77 1.52
533 635 1.476488 GCCCCGTGCATCTTGTTTTAT 59.524 47.619 0.00 0.00 40.77 1.40
534 636 2.685897 GCCCCGTGCATCTTGTTTTATA 59.314 45.455 0.00 0.00 40.77 0.98
535 637 3.317993 GCCCCGTGCATCTTGTTTTATAT 59.682 43.478 0.00 0.00 40.77 0.86
536 638 4.202111 GCCCCGTGCATCTTGTTTTATATT 60.202 41.667 0.00 0.00 40.77 1.28
537 639 5.681179 GCCCCGTGCATCTTGTTTTATATTT 60.681 40.000 0.00 0.00 40.77 1.40
538 640 6.337356 CCCCGTGCATCTTGTTTTATATTTT 58.663 36.000 0.00 0.00 0.00 1.82
539 641 6.816140 CCCCGTGCATCTTGTTTTATATTTTT 59.184 34.615 0.00 0.00 0.00 1.94
558 660 4.769345 TTTTGGGCCCAATTCATATTCC 57.231 40.909 37.41 0.00 35.70 3.01
559 661 3.704545 TTGGGCCCAATTCATATTCCT 57.295 42.857 34.07 0.00 0.00 3.36
560 662 3.704545 TGGGCCCAATTCATATTCCTT 57.295 42.857 26.33 0.00 0.00 3.36
561 663 4.006247 TGGGCCCAATTCATATTCCTTT 57.994 40.909 26.33 0.00 0.00 3.11
562 664 4.369872 TGGGCCCAATTCATATTCCTTTT 58.630 39.130 26.33 0.00 0.00 2.27
563 665 4.787534 TGGGCCCAATTCATATTCCTTTTT 59.212 37.500 26.33 0.00 0.00 1.94
564 666 5.104569 TGGGCCCAATTCATATTCCTTTTTC 60.105 40.000 26.33 0.00 0.00 2.29
565 667 5.130975 GGGCCCAATTCATATTCCTTTTTCT 59.869 40.000 19.95 0.00 0.00 2.52
566 668 6.326323 GGGCCCAATTCATATTCCTTTTTCTA 59.674 38.462 19.95 0.00 0.00 2.10
567 669 7.436933 GGCCCAATTCATATTCCTTTTTCTAG 58.563 38.462 0.00 0.00 0.00 2.43
568 670 7.436933 GCCCAATTCATATTCCTTTTTCTAGG 58.563 38.462 0.00 0.00 36.59 3.02
569 671 7.436933 CCCAATTCATATTCCTTTTTCTAGGC 58.563 38.462 0.00 0.00 35.15 3.93
570 672 7.288621 CCCAATTCATATTCCTTTTTCTAGGCT 59.711 37.037 0.00 0.00 35.15 4.58
571 673 8.699130 CCAATTCATATTCCTTTTTCTAGGCTT 58.301 33.333 0.00 0.00 35.15 4.35
572 674 9.741647 CAATTCATATTCCTTTTTCTAGGCTTC 57.258 33.333 0.00 0.00 35.15 3.86
573 675 7.553881 TTCATATTCCTTTTTCTAGGCTTCG 57.446 36.000 0.00 0.00 35.15 3.79
574 676 6.650120 TCATATTCCTTTTTCTAGGCTTCGT 58.350 36.000 0.00 0.00 35.15 3.85
575 677 6.538742 TCATATTCCTTTTTCTAGGCTTCGTG 59.461 38.462 0.00 0.00 35.15 4.35
576 678 3.053831 TCCTTTTTCTAGGCTTCGTGG 57.946 47.619 0.00 0.00 35.15 4.94
577 679 2.084546 CCTTTTTCTAGGCTTCGTGGG 58.915 52.381 0.00 0.00 0.00 4.61
578 680 1.468914 CTTTTTCTAGGCTTCGTGGGC 59.531 52.381 0.00 0.00 0.00 5.36
579 681 0.690762 TTTTCTAGGCTTCGTGGGCT 59.309 50.000 0.00 10.50 44.34 5.19
580 682 0.690762 TTTCTAGGCTTCGTGGGCTT 59.309 50.000 10.85 0.45 42.20 4.35
581 683 0.690762 TTCTAGGCTTCGTGGGCTTT 59.309 50.000 10.85 0.00 42.20 3.51
582 684 0.036388 TCTAGGCTTCGTGGGCTTTG 60.036 55.000 10.85 6.21 42.20 2.77
583 685 1.648467 CTAGGCTTCGTGGGCTTTGC 61.648 60.000 10.85 0.00 42.20 3.68
584 686 2.404566 TAGGCTTCGTGGGCTTTGCA 62.405 55.000 10.85 0.00 42.20 4.08
585 687 2.639327 GGCTTCGTGGGCTTTGCAT 61.639 57.895 0.00 0.00 0.00 3.96
586 688 1.290009 GCTTCGTGGGCTTTGCATT 59.710 52.632 0.00 0.00 0.00 3.56
587 689 0.525761 GCTTCGTGGGCTTTGCATTA 59.474 50.000 0.00 0.00 0.00 1.90
588 690 1.468054 GCTTCGTGGGCTTTGCATTAG 60.468 52.381 0.00 0.00 0.00 1.73
589 691 0.525761 TTCGTGGGCTTTGCATTAGC 59.474 50.000 11.75 11.75 42.57 3.09
603 705 4.972286 GCATTAGCAACAAGGTTTTCAC 57.028 40.909 0.00 0.00 41.58 3.18
604 706 4.620982 GCATTAGCAACAAGGTTTTCACT 58.379 39.130 0.00 0.00 41.58 3.41
605 707 4.681483 GCATTAGCAACAAGGTTTTCACTC 59.319 41.667 0.00 0.00 41.58 3.51
606 708 4.545823 TTAGCAACAAGGTTTTCACTCG 57.454 40.909 0.00 0.00 0.00 4.18
607 709 1.065551 AGCAACAAGGTTTTCACTCGC 59.934 47.619 0.00 0.00 0.00 5.03
608 710 1.741993 CAACAAGGTTTTCACTCGCG 58.258 50.000 0.00 0.00 0.00 5.87
609 711 1.329292 CAACAAGGTTTTCACTCGCGA 59.671 47.619 9.26 9.26 0.00 5.87
610 712 0.935196 ACAAGGTTTTCACTCGCGAC 59.065 50.000 3.71 0.00 0.00 5.19
611 713 0.934496 CAAGGTTTTCACTCGCGACA 59.066 50.000 3.71 0.00 0.00 4.35
612 714 1.329292 CAAGGTTTTCACTCGCGACAA 59.671 47.619 3.71 0.00 0.00 3.18
613 715 1.878953 AGGTTTTCACTCGCGACAAT 58.121 45.000 3.71 0.00 0.00 2.71
614 716 3.034721 AGGTTTTCACTCGCGACAATA 57.965 42.857 3.71 0.00 0.00 1.90
615 717 2.735134 AGGTTTTCACTCGCGACAATAC 59.265 45.455 3.71 3.86 0.00 1.89
616 718 2.735134 GGTTTTCACTCGCGACAATACT 59.265 45.455 3.71 0.00 0.00 2.12
617 719 3.181533 GGTTTTCACTCGCGACAATACTC 60.182 47.826 3.71 0.00 0.00 2.59
618 720 1.891178 TTCACTCGCGACAATACTCG 58.109 50.000 3.71 0.00 36.70 4.18
619 721 1.081094 TCACTCGCGACAATACTCGA 58.919 50.000 3.71 0.00 35.58 4.04
620 722 1.669265 TCACTCGCGACAATACTCGAT 59.331 47.619 3.71 0.00 35.58 3.59
621 723 2.037649 CACTCGCGACAATACTCGATC 58.962 52.381 3.71 0.00 35.58 3.69
622 724 1.310018 CTCGCGACAATACTCGATCG 58.690 55.000 3.71 9.36 35.58 3.69
623 725 0.041576 TCGCGACAATACTCGATCGG 60.042 55.000 16.41 8.65 35.58 4.18
624 726 0.316772 CGCGACAATACTCGATCGGT 60.317 55.000 16.41 14.22 35.58 4.69
625 727 1.836383 GCGACAATACTCGATCGGTT 58.164 50.000 16.41 4.90 35.58 4.44
626 728 1.779724 GCGACAATACTCGATCGGTTC 59.220 52.381 16.41 5.81 35.58 3.62
634 736 4.891727 CGATCGGTTCGGGCTGGG 62.892 72.222 7.38 0.00 44.28 4.45
635 737 3.467226 GATCGGTTCGGGCTGGGA 61.467 66.667 0.00 0.00 0.00 4.37
636 738 3.735037 GATCGGTTCGGGCTGGGAC 62.735 68.421 0.00 0.00 0.00 4.46
638 740 4.096003 CGGTTCGGGCTGGGACAT 62.096 66.667 0.00 0.00 38.20 3.06
639 741 2.355115 GGTTCGGGCTGGGACATT 59.645 61.111 0.00 0.00 38.20 2.71
640 742 1.304134 GGTTCGGGCTGGGACATTT 60.304 57.895 0.00 0.00 38.20 2.32
641 743 0.898326 GGTTCGGGCTGGGACATTTT 60.898 55.000 0.00 0.00 38.20 1.82
642 744 0.526211 GTTCGGGCTGGGACATTTTC 59.474 55.000 0.00 0.00 38.20 2.29
643 745 0.111446 TTCGGGCTGGGACATTTTCA 59.889 50.000 0.00 0.00 38.20 2.69
644 746 0.322456 TCGGGCTGGGACATTTTCAG 60.322 55.000 0.00 0.00 38.20 3.02
645 747 0.322456 CGGGCTGGGACATTTTCAGA 60.322 55.000 0.00 0.00 38.20 3.27
646 748 1.683011 CGGGCTGGGACATTTTCAGAT 60.683 52.381 0.00 0.00 38.20 2.90
647 749 2.027385 GGGCTGGGACATTTTCAGATC 58.973 52.381 0.00 0.00 38.20 2.75
648 750 1.672881 GGCTGGGACATTTTCAGATCG 59.327 52.381 0.00 0.00 38.20 3.69
649 751 2.632377 GCTGGGACATTTTCAGATCGA 58.368 47.619 0.00 0.00 38.20 3.59
650 752 3.009723 GCTGGGACATTTTCAGATCGAA 58.990 45.455 0.00 0.00 38.20 3.71
651 753 3.181506 GCTGGGACATTTTCAGATCGAAC 60.182 47.826 0.00 0.00 38.20 3.95
652 754 4.002982 CTGGGACATTTTCAGATCGAACA 58.997 43.478 0.00 0.00 38.20 3.18
653 755 4.393834 TGGGACATTTTCAGATCGAACAA 58.606 39.130 0.00 0.86 31.73 2.83
654 756 4.824537 TGGGACATTTTCAGATCGAACAAA 59.175 37.500 0.00 0.00 31.73 2.83
655 757 5.300539 TGGGACATTTTCAGATCGAACAAAA 59.699 36.000 0.00 0.00 31.73 2.44
656 758 6.015519 TGGGACATTTTCAGATCGAACAAAAT 60.016 34.615 0.00 0.00 31.73 1.82
657 759 6.528072 GGGACATTTTCAGATCGAACAAAATC 59.472 38.462 0.00 0.00 31.73 2.17
658 760 6.249260 GGACATTTTCAGATCGAACAAAATCG 59.751 38.462 0.00 0.00 44.04 3.34
659 761 6.668323 ACATTTTCAGATCGAACAAAATCGT 58.332 32.000 0.00 0.00 43.19 3.73
660 762 7.138736 ACATTTTCAGATCGAACAAAATCGTT 58.861 30.769 0.00 0.00 43.19 3.85
661 763 7.323656 ACATTTTCAGATCGAACAAAATCGTTC 59.676 33.333 0.00 0.00 43.19 3.95
673 775 1.965219 ATCGTTCGATCGATCCCCC 59.035 57.895 22.30 6.34 45.57 5.40
674 776 0.826256 ATCGTTCGATCGATCCCCCA 60.826 55.000 22.30 0.00 45.57 4.96
675 777 1.299926 CGTTCGATCGATCCCCCAC 60.300 63.158 20.18 11.82 0.00 4.61
676 778 1.735376 CGTTCGATCGATCCCCCACT 61.735 60.000 20.18 0.00 0.00 4.00
677 779 0.464452 GTTCGATCGATCCCCCACTT 59.536 55.000 20.18 0.00 0.00 3.16
678 780 0.750850 TTCGATCGATCCCCCACTTC 59.249 55.000 20.18 0.00 0.00 3.01
679 781 1.113517 TCGATCGATCCCCCACTTCC 61.114 60.000 19.51 0.00 0.00 3.46
680 782 1.115930 CGATCGATCCCCCACTTCCT 61.116 60.000 19.51 0.00 0.00 3.36
681 783 0.394565 GATCGATCCCCCACTTCCTG 59.605 60.000 14.76 0.00 0.00 3.86
682 784 1.700042 ATCGATCCCCCACTTCCTGC 61.700 60.000 0.00 0.00 0.00 4.85
683 785 2.597903 GATCCCCCACTTCCTGCC 59.402 66.667 0.00 0.00 0.00 4.85
684 786 3.406595 GATCCCCCACTTCCTGCCG 62.407 68.421 0.00 0.00 0.00 5.69
685 787 3.943137 ATCCCCCACTTCCTGCCGA 62.943 63.158 0.00 0.00 0.00 5.54
686 788 3.646715 CCCCCACTTCCTGCCGAA 61.647 66.667 0.00 0.00 0.00 4.30
687 789 2.359975 CCCCACTTCCTGCCGAAC 60.360 66.667 0.00 0.00 0.00 3.95
688 790 2.742372 CCCACTTCCTGCCGAACG 60.742 66.667 0.00 0.00 0.00 3.95
689 791 2.342279 CCACTTCCTGCCGAACGA 59.658 61.111 0.00 0.00 0.00 3.85
690 792 1.079127 CCACTTCCTGCCGAACGAT 60.079 57.895 0.00 0.00 0.00 3.73
691 793 0.673644 CCACTTCCTGCCGAACGATT 60.674 55.000 0.00 0.00 0.00 3.34
692 794 0.721718 CACTTCCTGCCGAACGATTC 59.278 55.000 0.00 0.00 0.00 2.52
704 806 2.890474 CGATTCGTTCGGGCTGGG 60.890 66.667 0.00 0.00 44.28 4.45
705 807 2.582436 GATTCGTTCGGGCTGGGA 59.418 61.111 0.00 0.00 0.00 4.37
706 808 1.814169 GATTCGTTCGGGCTGGGAC 60.814 63.158 0.00 0.00 0.00 4.46
707 809 2.515996 GATTCGTTCGGGCTGGGACA 62.516 60.000 0.00 0.00 0.00 4.02
708 810 1.910580 ATTCGTTCGGGCTGGGACAT 61.911 55.000 0.00 0.00 38.20 3.06
709 811 2.511600 CGTTCGGGCTGGGACATC 60.512 66.667 0.00 0.00 38.20 3.06
710 812 2.124695 GTTCGGGCTGGGACATCC 60.125 66.667 0.00 0.00 45.18 3.51
721 823 2.551644 GGACATCCCAACACCGAAC 58.448 57.895 0.00 0.00 34.14 3.95
722 824 1.296056 GGACATCCCAACACCGAACG 61.296 60.000 0.00 0.00 34.14 3.95
723 825 0.601841 GACATCCCAACACCGAACGT 60.602 55.000 0.00 0.00 0.00 3.99
724 826 0.179040 ACATCCCAACACCGAACGTT 60.179 50.000 0.00 0.00 0.00 3.99
725 827 0.515564 CATCCCAACACCGAACGTTC 59.484 55.000 18.47 18.47 0.00 3.95
736 838 0.226235 CGAACGTTCGGCACATATCG 59.774 55.000 36.53 13.23 46.30 2.92
737 839 1.552226 GAACGTTCGGCACATATCGA 58.448 50.000 13.36 0.00 0.00 3.59
738 840 1.254570 GAACGTTCGGCACATATCGAC 59.745 52.381 13.36 0.00 34.99 4.20
739 841 0.864377 ACGTTCGGCACATATCGACG 60.864 55.000 0.00 0.00 36.65 5.12
740 842 0.864377 CGTTCGGCACATATCGACGT 60.864 55.000 0.00 0.00 34.99 4.34
741 843 0.844503 GTTCGGCACATATCGACGTC 59.155 55.000 5.18 5.18 34.99 4.34
742 844 0.248743 TTCGGCACATATCGACGTCC 60.249 55.000 10.58 0.00 34.99 4.79
743 845 1.065109 CGGCACATATCGACGTCCA 59.935 57.895 10.58 0.00 0.00 4.02
744 846 0.526739 CGGCACATATCGACGTCCAA 60.527 55.000 10.58 0.00 0.00 3.53
745 847 1.647346 GGCACATATCGACGTCCAAA 58.353 50.000 10.58 0.00 0.00 3.28
746 848 2.004017 GGCACATATCGACGTCCAAAA 58.996 47.619 10.58 0.00 0.00 2.44
747 849 2.417239 GGCACATATCGACGTCCAAAAA 59.583 45.455 10.58 0.00 0.00 1.94
748 850 3.485216 GGCACATATCGACGTCCAAAAAG 60.485 47.826 10.58 0.00 0.00 2.27
749 851 3.369756 GCACATATCGACGTCCAAAAAGA 59.630 43.478 10.58 0.00 0.00 2.52
750 852 4.142988 GCACATATCGACGTCCAAAAAGAA 60.143 41.667 10.58 0.00 0.00 2.52
751 853 5.615984 GCACATATCGACGTCCAAAAAGAAA 60.616 40.000 10.58 0.00 0.00 2.52
815 917 1.793581 GCGATCGTCATGCACCAAA 59.206 52.632 17.81 0.00 0.00 3.28
839 941 6.198650 TGATGCAGAAGTGGTTGATTAATG 57.801 37.500 0.00 0.00 0.00 1.90
850 952 3.001939 GGTTGATTAATGGGACGCGTTAG 59.998 47.826 15.53 0.00 0.00 2.34
868 970 4.621886 CGTTAGTTAAGTGCTTCACTCTCC 59.378 45.833 2.46 0.00 44.62 3.71
869 971 5.539048 GTTAGTTAAGTGCTTCACTCTCCA 58.461 41.667 2.46 0.00 44.62 3.86
877 991 1.630244 CTTCACTCTCCAAAGCGGCG 61.630 60.000 0.51 0.51 33.14 6.46
951 1065 1.809207 GTGTCCCCGCATCCATTTG 59.191 57.895 0.00 0.00 0.00 2.32
957 1071 2.174639 TCCCCGCATCCATTTGTATTCT 59.825 45.455 0.00 0.00 0.00 2.40
975 1089 2.099652 CTGCTCCTCCACACCACGAA 62.100 60.000 0.00 0.00 0.00 3.85
977 1091 0.951040 GCTCCTCCACACCACGAAAG 60.951 60.000 0.00 0.00 0.00 2.62
991 1119 3.193263 CACGAAAGCAGACTCATAGCAT 58.807 45.455 0.00 0.00 0.00 3.79
1083 1211 4.436998 CTCGCCACCACCGACCTC 62.437 72.222 0.00 0.00 0.00 3.85
1096 1382 2.093288 ACCGACCTCGACTACTACATGA 60.093 50.000 0.00 0.00 43.02 3.07
1188 1474 2.969238 CGCCGGTGGATCATGCTC 60.969 66.667 7.26 0.00 0.00 4.26
1195 1481 1.035923 GTGGATCATGCTCGAGGAGA 58.964 55.000 15.58 11.19 0.00 3.71
1215 1501 4.351938 CGGCCAGACGTCGACCAA 62.352 66.667 19.87 0.00 0.00 3.67
1221 1507 0.109689 CAGACGTCGACCAAGACTCC 60.110 60.000 10.58 0.00 38.90 3.85
1224 1510 2.126031 GTCGACCAAGACTCCCGC 60.126 66.667 3.51 0.00 38.09 6.13
1242 1528 0.108567 GCCTCTTCCTCAACCTCGAC 60.109 60.000 0.00 0.00 0.00 4.20
1246 1532 0.388649 CTTCCTCAACCTCGACACCG 60.389 60.000 0.00 0.00 37.07 4.94
1247 1533 1.812686 TTCCTCAACCTCGACACCGG 61.813 60.000 0.00 0.00 36.24 5.28
1256 1542 4.675029 CGACACCGGGCGTTTCCT 62.675 66.667 6.32 0.00 34.39 3.36
1296 1582 2.859032 GCTACGCAGCTACACATACCTC 60.859 54.545 0.00 0.00 44.93 3.85
1324 1610 4.767255 GTGGCCTGCTCGTCCTGG 62.767 72.222 3.32 0.00 0.00 4.45
1329 1615 3.205395 CTGCTCGTCCTGGAGGAG 58.795 66.667 32.03 32.03 46.49 3.69
1359 1645 1.739562 CAGGCTCTGCGTCCTCAAC 60.740 63.158 0.00 0.00 0.00 3.18
1389 1675 1.669440 CACCCTCTTCCGTTTCCGA 59.331 57.895 0.00 0.00 35.63 4.55
1398 1684 3.411351 CGTTTCCGAGTGCCACCG 61.411 66.667 0.00 0.00 35.63 4.94
1416 1702 1.450312 GGTGCATCCCTTCGACAGG 60.450 63.158 0.00 6.66 43.49 4.00
1425 1711 1.444553 CTTCGACAGGAGCGTGGTC 60.445 63.158 0.00 0.00 0.00 4.02
1475 1761 2.703536 TCAGCTTCTACAACTTCCACCA 59.296 45.455 0.00 0.00 0.00 4.17
1692 1978 2.265182 GCAAGCCACGCCCACTTTA 61.265 57.895 0.00 0.00 0.00 1.85
1791 2077 2.597510 AGGAAAACGCTGGTGCCC 60.598 61.111 0.00 0.00 35.36 5.36
1916 2203 1.731720 GAGGGTCTGATGTGTGAAGC 58.268 55.000 0.00 0.00 0.00 3.86
1974 2261 7.497249 CGAAGTTTTATTGAGAGATGGGAAGAT 59.503 37.037 0.00 0.00 0.00 2.40
2058 2345 1.078848 GAGCCTCGCACATGTCCTT 60.079 57.895 0.00 0.00 0.00 3.36
2094 2381 2.291190 GGGCAAGCGTTAGTTTTGTGTA 59.709 45.455 0.00 0.00 0.00 2.90
2121 2408 3.499918 ACACAAATGCTAGACAAGTGCTC 59.500 43.478 0.00 0.00 34.69 4.26
2129 2416 3.373439 GCTAGACAAGTGCTCCTTTGATG 59.627 47.826 0.00 0.00 0.00 3.07
2135 2422 5.776744 ACAAGTGCTCCTTTGATGATTTTC 58.223 37.500 0.00 0.00 0.00 2.29
2136 2423 5.302568 ACAAGTGCTCCTTTGATGATTTTCA 59.697 36.000 0.00 0.00 0.00 2.69
2137 2424 5.382618 AGTGCTCCTTTGATGATTTTCAC 57.617 39.130 0.00 0.00 0.00 3.18
2143 2434 9.412460 TGCTCCTTTGATGATTTTCACTATTAT 57.588 29.630 0.00 0.00 0.00 1.28
2216 2507 2.930950 TGGCTAATCCATTTCCCTTCG 58.069 47.619 0.00 0.00 40.72 3.79
2241 2532 2.162681 GTGGGGTTGAGATTTGAGGTG 58.837 52.381 0.00 0.00 0.00 4.00
2266 2558 1.731709 TGGTTGCTGTGAAATCGATCG 59.268 47.619 9.36 9.36 0.00 3.69
2279 2571 1.165907 TCGATCGCATCCATTTGGGC 61.166 55.000 11.09 0.00 36.21 5.36
2280 2572 1.446516 CGATCGCATCCATTTGGGCA 61.447 55.000 0.26 0.00 36.21 5.36
2281 2573 0.746063 GATCGCATCCATTTGGGCAA 59.254 50.000 0.00 0.00 36.21 4.52
2282 2574 0.748450 ATCGCATCCATTTGGGCAAG 59.252 50.000 0.00 0.00 36.21 4.01
2284 2576 0.179129 CGCATCCATTTGGGCAAGTC 60.179 55.000 0.00 0.00 36.21 3.01
2285 2577 0.896923 GCATCCATTTGGGCAAGTCA 59.103 50.000 0.00 0.00 36.21 3.41
2286 2578 1.404583 GCATCCATTTGGGCAAGTCAC 60.405 52.381 0.00 0.00 36.21 3.67
2299 3556 0.179078 AAGTCACGCCCAAACGTACA 60.179 50.000 0.00 0.00 46.34 2.90
2300 3557 0.599204 AGTCACGCCCAAACGTACAG 60.599 55.000 0.00 0.00 46.34 2.74
2301 3558 0.877213 GTCACGCCCAAACGTACAGT 60.877 55.000 0.00 0.00 46.34 3.55
2302 3559 0.876777 TCACGCCCAAACGTACAGTG 60.877 55.000 0.00 0.00 46.34 3.66
2303 3560 1.595929 ACGCCCAAACGTACAGTGG 60.596 57.895 0.00 0.00 46.19 4.00
2304 3561 1.595929 CGCCCAAACGTACAGTGGT 60.596 57.895 0.00 0.00 0.00 4.16
2305 3562 1.837538 CGCCCAAACGTACAGTGGTG 61.838 60.000 0.00 0.00 0.00 4.17
2306 3563 1.946267 CCCAAACGTACAGTGGTGC 59.054 57.895 0.00 0.00 0.00 5.01
2307 3564 0.534203 CCCAAACGTACAGTGGTGCT 60.534 55.000 0.00 0.00 0.00 4.40
2320 3577 1.065418 GTGGTGCTGTAGGTAGCCAAT 60.065 52.381 0.00 0.00 43.02 3.16
2321 3578 2.169769 GTGGTGCTGTAGGTAGCCAATA 59.830 50.000 0.00 0.00 43.02 1.90
2322 3579 2.169769 TGGTGCTGTAGGTAGCCAATAC 59.830 50.000 0.00 0.00 43.02 1.89
2333 3590 4.529109 GTAGCCAATACCCTCTGATCTC 57.471 50.000 0.00 0.00 0.00 2.75
2334 3591 3.051940 AGCCAATACCCTCTGATCTCA 57.948 47.619 0.00 0.00 0.00 3.27
2335 3592 3.387962 AGCCAATACCCTCTGATCTCAA 58.612 45.455 0.00 0.00 0.00 3.02
2336 3593 3.390639 AGCCAATACCCTCTGATCTCAAG 59.609 47.826 0.00 0.00 0.00 3.02
2337 3594 3.135530 GCCAATACCCTCTGATCTCAAGT 59.864 47.826 0.00 0.00 0.00 3.16
2338 3595 4.345257 GCCAATACCCTCTGATCTCAAGTA 59.655 45.833 0.00 0.00 0.00 2.24
2339 3596 5.012561 GCCAATACCCTCTGATCTCAAGTAT 59.987 44.000 0.00 0.00 0.00 2.12
2340 3597 6.211584 GCCAATACCCTCTGATCTCAAGTATA 59.788 42.308 0.00 0.00 0.00 1.47
2341 3598 7.093112 GCCAATACCCTCTGATCTCAAGTATAT 60.093 40.741 0.00 0.00 0.00 0.86
2342 3599 9.480861 CCAATACCCTCTGATCTCAAGTATATA 57.519 37.037 0.00 0.00 0.00 0.86
2670 3927 5.579047 ACCCACATAGATCATGAACCAAAA 58.421 37.500 0.00 0.00 38.10 2.44
2672 3929 6.669154 ACCCACATAGATCATGAACCAAAATT 59.331 34.615 0.00 0.00 38.10 1.82
2685 3942 7.727331 TGAACCAAAATTTTGATTCATGGAC 57.273 32.000 29.09 10.05 43.77 4.02
2686 3943 6.709846 TGAACCAAAATTTTGATTCATGGACC 59.290 34.615 29.09 9.43 43.77 4.46
2687 3944 5.237048 ACCAAAATTTTGATTCATGGACCG 58.763 37.500 28.44 11.85 40.55 4.79
2688 3945 5.221621 ACCAAAATTTTGATTCATGGACCGT 60.222 36.000 28.44 12.41 40.55 4.83
2689 3946 5.700373 CCAAAATTTTGATTCATGGACCGTT 59.300 36.000 28.44 0.00 40.55 4.44
2690 3947 6.347563 CCAAAATTTTGATTCATGGACCGTTG 60.348 38.462 28.44 5.57 40.55 4.10
2693 3950 3.704800 TTGATTCATGGACCGTTGGTA 57.295 42.857 0.00 0.00 35.25 3.25
2694 3951 3.924114 TGATTCATGGACCGTTGGTAT 57.076 42.857 0.00 0.00 35.25 2.73
2695 3952 5.360649 TTGATTCATGGACCGTTGGTATA 57.639 39.130 0.00 0.00 35.25 1.47
2696 3953 5.560722 TGATTCATGGACCGTTGGTATAT 57.439 39.130 0.00 0.00 35.25 0.86
2697 3954 5.935945 TGATTCATGGACCGTTGGTATATT 58.064 37.500 0.00 0.00 35.25 1.28
2699 3956 6.262049 TGATTCATGGACCGTTGGTATATTTG 59.738 38.462 0.00 0.00 35.25 2.32
2700 3957 5.360649 TCATGGACCGTTGGTATATTTGA 57.639 39.130 0.00 0.00 35.25 2.69
2701 3958 5.364778 TCATGGACCGTTGGTATATTTGAG 58.635 41.667 0.00 0.00 35.25 3.02
2702 3959 4.829872 TGGACCGTTGGTATATTTGAGT 57.170 40.909 0.00 0.00 35.25 3.41
2703 3960 5.168647 TGGACCGTTGGTATATTTGAGTT 57.831 39.130 0.00 0.00 35.25 3.01
2704 3961 5.180271 TGGACCGTTGGTATATTTGAGTTC 58.820 41.667 0.00 0.00 35.25 3.01
2705 3962 4.573607 GGACCGTTGGTATATTTGAGTTCC 59.426 45.833 0.00 0.00 35.25 3.62
2706 3963 5.425630 GACCGTTGGTATATTTGAGTTCCT 58.574 41.667 0.00 0.00 35.25 3.36
2707 3964 5.812286 ACCGTTGGTATATTTGAGTTCCTT 58.188 37.500 0.00 0.00 32.11 3.36
2708 3965 5.646360 ACCGTTGGTATATTTGAGTTCCTTG 59.354 40.000 0.00 0.00 32.11 3.61
2709 3966 5.646360 CCGTTGGTATATTTGAGTTCCTTGT 59.354 40.000 0.00 0.00 0.00 3.16
2710 3967 6.403200 CCGTTGGTATATTTGAGTTCCTTGTG 60.403 42.308 0.00 0.00 0.00 3.33
2711 3968 6.403200 CGTTGGTATATTTGAGTTCCTTGTGG 60.403 42.308 0.00 0.00 0.00 4.17
2712 3969 5.505780 TGGTATATTTGAGTTCCTTGTGGG 58.494 41.667 0.00 0.00 0.00 4.61
2714 3971 5.589050 GGTATATTTGAGTTCCTTGTGGGAC 59.411 44.000 0.00 0.00 45.03 4.46
2715 3972 1.961793 TTTGAGTTCCTTGTGGGACG 58.038 50.000 0.00 0.00 46.60 4.79
2716 3973 1.124780 TTGAGTTCCTTGTGGGACGA 58.875 50.000 0.00 0.00 46.60 4.20
2717 3974 0.679505 TGAGTTCCTTGTGGGACGAG 59.320 55.000 0.00 0.00 46.60 4.18
2718 3975 0.966920 GAGTTCCTTGTGGGACGAGA 59.033 55.000 0.00 0.00 46.60 4.04
2719 3976 1.550976 GAGTTCCTTGTGGGACGAGAT 59.449 52.381 0.00 0.00 46.60 2.75
2720 3977 1.550976 AGTTCCTTGTGGGACGAGATC 59.449 52.381 0.00 0.00 46.60 2.75
2721 3978 1.550976 GTTCCTTGTGGGACGAGATCT 59.449 52.381 0.00 0.00 45.03 2.75
2722 3979 1.938585 TCCTTGTGGGACGAGATCTT 58.061 50.000 0.00 0.00 39.58 2.40
2723 3980 2.257207 TCCTTGTGGGACGAGATCTTT 58.743 47.619 0.00 0.00 39.58 2.52
2725 3982 2.028112 CCTTGTGGGACGAGATCTTTCA 60.028 50.000 0.00 0.00 37.23 2.69
2728 3985 3.399330 TGTGGGACGAGATCTTTCAAAC 58.601 45.455 0.00 0.44 0.00 2.93
2729 3986 3.181459 TGTGGGACGAGATCTTTCAAACA 60.181 43.478 0.00 2.93 0.00 2.83
2730 3987 3.813166 GTGGGACGAGATCTTTCAAACAA 59.187 43.478 0.00 0.00 0.00 2.83
2731 3988 4.065088 TGGGACGAGATCTTTCAAACAAG 58.935 43.478 0.00 0.00 0.00 3.16
2732 3989 4.202315 TGGGACGAGATCTTTCAAACAAGA 60.202 41.667 0.00 0.00 37.20 3.02
2733 3990 4.152580 GGGACGAGATCTTTCAAACAAGAC 59.847 45.833 0.00 0.00 35.57 3.01
2734 3991 4.152580 GGACGAGATCTTTCAAACAAGACC 59.847 45.833 0.00 0.00 35.57 3.85
2735 3992 3.741344 ACGAGATCTTTCAAACAAGACCG 59.259 43.478 0.00 0.00 35.57 4.79
2736 3993 3.123621 CGAGATCTTTCAAACAAGACCGG 59.876 47.826 0.00 0.00 35.57 5.28
2737 3994 2.814336 AGATCTTTCAAACAAGACCGGC 59.186 45.455 0.00 0.00 35.57 6.13
2738 3995 1.314730 TCTTTCAAACAAGACCGGCC 58.685 50.000 0.00 0.00 0.00 6.13
2739 3996 0.040425 CTTTCAAACAAGACCGGCCG 60.040 55.000 21.04 21.04 0.00 6.13
2740 3997 2.065906 TTTCAAACAAGACCGGCCGC 62.066 55.000 22.85 7.25 0.00 6.53
2741 3998 3.283684 CAAACAAGACCGGCCGCA 61.284 61.111 22.85 0.00 0.00 5.69
2742 3999 2.517402 AAACAAGACCGGCCGCAA 60.517 55.556 22.85 0.00 0.00 4.85
2743 4000 2.841160 AAACAAGACCGGCCGCAAC 61.841 57.895 22.85 13.04 0.00 4.17
2744 4001 3.767630 AACAAGACCGGCCGCAACT 62.768 57.895 22.85 15.28 0.00 3.16
2745 4002 2.047655 CAAGACCGGCCGCAACTA 60.048 61.111 22.85 0.00 0.00 2.24
2746 4003 1.449601 CAAGACCGGCCGCAACTAT 60.450 57.895 22.85 0.00 0.00 2.12
2747 4004 0.179094 CAAGACCGGCCGCAACTATA 60.179 55.000 22.85 0.00 0.00 1.31
2748 4005 0.756903 AAGACCGGCCGCAACTATAT 59.243 50.000 22.85 0.46 0.00 0.86
2749 4006 0.756903 AGACCGGCCGCAACTATATT 59.243 50.000 22.85 0.00 0.00 1.28
2750 4007 1.140252 AGACCGGCCGCAACTATATTT 59.860 47.619 22.85 0.00 0.00 1.40
2751 4008 1.529865 GACCGGCCGCAACTATATTTC 59.470 52.381 22.85 0.00 0.00 2.17
2752 4009 1.134340 ACCGGCCGCAACTATATTTCA 60.134 47.619 22.85 0.00 0.00 2.69
2753 4010 1.531149 CCGGCCGCAACTATATTTCAG 59.469 52.381 22.85 0.00 0.00 3.02
2754 4011 2.210116 CGGCCGCAACTATATTTCAGT 58.790 47.619 14.67 0.00 0.00 3.41
2755 4012 2.032894 CGGCCGCAACTATATTTCAGTG 60.033 50.000 14.67 0.00 0.00 3.66
2756 4013 3.202906 GGCCGCAACTATATTTCAGTGA 58.797 45.455 0.00 0.00 0.00 3.41
2757 4014 3.625764 GGCCGCAACTATATTTCAGTGAA 59.374 43.478 0.08 0.08 0.00 3.18
2758 4015 4.275936 GGCCGCAACTATATTTCAGTGAAT 59.724 41.667 6.36 0.01 0.00 2.57
2759 4016 5.221048 GGCCGCAACTATATTTCAGTGAATT 60.221 40.000 6.36 5.94 0.00 2.17
2760 4017 6.265577 GCCGCAACTATATTTCAGTGAATTT 58.734 36.000 6.36 0.27 0.00 1.82
2761 4018 6.197096 GCCGCAACTATATTTCAGTGAATTTG 59.803 38.462 6.36 5.24 0.00 2.32
2762 4019 7.471721 CCGCAACTATATTTCAGTGAATTTGA 58.528 34.615 6.36 0.00 0.00 2.69
2763 4020 7.967854 CCGCAACTATATTTCAGTGAATTTGAA 59.032 33.333 6.36 0.00 33.00 2.69
2764 4021 9.003112 CGCAACTATATTTCAGTGAATTTGAAG 57.997 33.333 6.36 4.14 36.07 3.02
2765 4022 8.801913 GCAACTATATTTCAGTGAATTTGAAGC 58.198 33.333 6.36 1.70 36.07 3.86
2766 4023 9.844790 CAACTATATTTCAGTGAATTTGAAGCA 57.155 29.630 6.36 0.00 36.07 3.91
2773 4030 9.932207 ATTTCAGTGAATTTGAAGCATGATAAA 57.068 25.926 6.36 0.00 36.07 1.40
2774 4031 9.761504 TTTCAGTGAATTTGAAGCATGATAAAA 57.238 25.926 6.36 0.00 36.07 1.52
2775 4032 8.746922 TCAGTGAATTTGAAGCATGATAAAAC 57.253 30.769 0.00 0.00 0.00 2.43
2776 4033 8.579006 TCAGTGAATTTGAAGCATGATAAAACT 58.421 29.630 0.00 0.00 0.00 2.66
2777 4034 9.844790 CAGTGAATTTGAAGCATGATAAAACTA 57.155 29.630 0.00 0.00 0.00 2.24
2803 4060 9.732130 ATAAAACTCTGATTCTTAGACTTGCTT 57.268 29.630 0.00 0.00 0.00 3.91
2805 4062 6.352016 ACTCTGATTCTTAGACTTGCTTCA 57.648 37.500 0.00 0.00 0.00 3.02
2809 4066 4.923871 TGATTCTTAGACTTGCTTCACGTC 59.076 41.667 0.00 0.00 33.66 4.34
2812 4069 4.299155 TCTTAGACTTGCTTCACGTCAAG 58.701 43.478 11.88 11.88 43.79 3.02
2819 4076 2.863658 GCTTCACGTCAAGCTAGTTG 57.136 50.000 17.63 0.00 44.71 3.16
2833 4090 6.479990 TCAAGCTAGTTGGATATCATGTTTCG 59.520 38.462 4.83 0.00 36.71 3.46
2841 4098 8.421784 AGTTGGATATCATGTTTCGTAGTGTAT 58.578 33.333 4.83 0.00 0.00 2.29
2845 4102 7.060748 GGATATCATGTTTCGTAGTGTATCGTG 59.939 40.741 4.83 0.00 0.00 4.35
2967 4224 4.881920 AGTGTTTTTGTGTGCTTCAAACT 58.118 34.783 0.00 0.00 35.05 2.66
2977 4234 3.186409 TGTGCTTCAAACTATTCTGCGTC 59.814 43.478 0.00 0.00 0.00 5.19
2982 4239 4.200838 TCAAACTATTCTGCGTCCATGA 57.799 40.909 0.00 0.00 0.00 3.07
2986 4243 3.937814 ACTATTCTGCGTCCATGAAACA 58.062 40.909 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.586732 TTTGCCATGGCTATAGAAGTAAAATAT 57.413 29.630 35.53 0.00 42.51 1.28
4 5 7.896383 ATTTGCCATGGCTATAGAAGTAAAA 57.104 32.000 35.53 22.86 42.51 1.52
7 8 7.896383 AAAATTTGCCATGGCTATAGAAGTA 57.104 32.000 35.53 13.29 42.51 2.24
8 9 6.796785 AAAATTTGCCATGGCTATAGAAGT 57.203 33.333 35.53 16.21 42.51 3.01
10 11 7.779798 AGAGTAAAATTTGCCATGGCTATAGAA 59.220 33.333 35.53 19.54 42.51 2.10
11 12 7.290061 AGAGTAAAATTTGCCATGGCTATAGA 58.710 34.615 35.53 15.54 42.51 1.98
12 13 7.516198 AGAGTAAAATTTGCCATGGCTATAG 57.484 36.000 35.53 0.00 42.51 1.31
13 14 9.586732 AATAGAGTAAAATTTGCCATGGCTATA 57.413 29.630 35.53 21.22 42.51 1.31
14 15 8.482852 AATAGAGTAAAATTTGCCATGGCTAT 57.517 30.769 35.53 25.11 42.51 2.97
58 59 6.507023 CAATTTTACCATGGAGCAATAGTCC 58.493 40.000 21.47 0.00 34.31 3.85
59 60 5.979517 GCAATTTTACCATGGAGCAATAGTC 59.020 40.000 21.47 2.67 0.00 2.59
60 61 5.658190 AGCAATTTTACCATGGAGCAATAGT 59.342 36.000 21.47 1.20 0.00 2.12
61 62 6.152932 AGCAATTTTACCATGGAGCAATAG 57.847 37.500 21.47 4.41 0.00 1.73
62 63 6.543430 AAGCAATTTTACCATGGAGCAATA 57.457 33.333 21.47 5.02 0.00 1.90
63 64 5.425196 AAGCAATTTTACCATGGAGCAAT 57.575 34.783 21.47 9.83 0.00 3.56
65 66 4.888326 AAAGCAATTTTACCATGGAGCA 57.112 36.364 21.47 0.00 0.00 4.26
145 239 4.980434 GCAATTAAGTTGGCATGCTCTATG 59.020 41.667 18.92 11.32 38.29 2.23
146 240 4.646040 TGCAATTAAGTTGGCATGCTCTAT 59.354 37.500 18.92 3.31 38.29 1.98
156 252 5.182950 TGTGTACTCCATGCAATTAAGTTGG 59.817 40.000 0.00 0.00 38.29 3.77
213 309 8.521170 ACTCACAAACTAGAGTGCTATACATA 57.479 34.615 0.00 0.00 43.09 2.29
214 310 7.122799 TGACTCACAAACTAGAGTGCTATACAT 59.877 37.037 0.00 0.00 44.61 2.29
220 316 4.562347 CCATGACTCACAAACTAGAGTGCT 60.562 45.833 0.00 0.00 44.61 4.40
224 320 3.930336 TGCCATGACTCACAAACTAGAG 58.070 45.455 0.00 0.00 37.87 2.43
299 398 8.218338 ACATCATGCCAAAAACATTGTTTTTA 57.782 26.923 29.88 19.89 31.17 1.52
300 399 7.098074 ACATCATGCCAAAAACATTGTTTTT 57.902 28.000 26.74 26.74 32.38 1.94
301 400 6.696441 ACATCATGCCAAAAACATTGTTTT 57.304 29.167 19.31 19.31 0.00 2.43
329 428 6.883756 TGTATAGTGTCAGAATTTGCCATGAA 59.116 34.615 0.00 0.00 0.00 2.57
341 440 8.478066 ACATAGCAAAATCTGTATAGTGTCAGA 58.522 33.333 0.00 0.00 43.38 3.27
387 486 8.043113 TCTGCTACATTTCTATGTTCAAGATGT 58.957 33.333 0.00 0.00 42.29 3.06
392 491 8.703604 GTAGTCTGCTACATTTCTATGTTCAA 57.296 34.615 0.00 0.00 42.29 2.69
394 493 7.982354 AAGGTAGTCTGCTACATTTCTATGTTC 59.018 37.037 7.03 0.00 46.18 3.18
409 509 4.142469 ACACACAAACAAAAGGTAGTCTGC 60.142 41.667 0.00 0.00 0.00 4.26
417 517 7.220683 CAGAATCTGTAACACACAAACAAAAGG 59.779 37.037 1.31 0.00 36.48 3.11
418 518 7.220683 CCAGAATCTGTAACACACAAACAAAAG 59.779 37.037 9.63 0.00 36.48 2.27
419 519 7.032580 CCAGAATCTGTAACACACAAACAAAA 58.967 34.615 9.63 0.00 36.48 2.44
423 523 5.527582 ACTCCAGAATCTGTAACACACAAAC 59.472 40.000 9.63 0.00 36.48 2.93
462 564 8.831715 AAAGCTCACAAAAATACCCTTAATTG 57.168 30.769 0.00 0.00 0.00 2.32
468 570 4.503123 GGCAAAAGCTCACAAAAATACCCT 60.503 41.667 0.00 0.00 0.00 4.34
475 577 3.119459 TGTTACGGCAAAAGCTCACAAAA 60.119 39.130 0.00 0.00 0.00 2.44
479 581 1.069227 CCTGTTACGGCAAAAGCTCAC 60.069 52.381 0.00 0.00 0.00 3.51
513 615 0.885196 TAAAACAAGATGCACGGGGC 59.115 50.000 0.00 0.00 45.13 5.80
514 616 5.514274 AATATAAAACAAGATGCACGGGG 57.486 39.130 0.00 0.00 0.00 5.73
515 617 7.826260 AAAAATATAAAACAAGATGCACGGG 57.174 32.000 0.00 0.00 0.00 5.28
536 638 4.787534 AGGAATATGAATTGGGCCCAAAAA 59.212 37.500 40.00 27.28 39.55 1.94
537 639 4.369872 AGGAATATGAATTGGGCCCAAAA 58.630 39.130 40.00 27.64 39.55 2.44
538 640 4.006247 AGGAATATGAATTGGGCCCAAA 57.994 40.909 40.00 25.18 39.55 3.28
539 641 3.704545 AGGAATATGAATTGGGCCCAA 57.295 42.857 38.72 38.72 40.47 4.12
540 642 3.704545 AAGGAATATGAATTGGGCCCA 57.295 42.857 24.45 24.45 0.00 5.36
541 643 5.130975 AGAAAAAGGAATATGAATTGGGCCC 59.869 40.000 17.59 17.59 0.00 5.80
542 644 6.239217 AGAAAAAGGAATATGAATTGGGCC 57.761 37.500 0.00 0.00 0.00 5.80
543 645 7.436933 CCTAGAAAAAGGAATATGAATTGGGC 58.563 38.462 0.00 0.00 39.15 5.36
544 646 7.288621 AGCCTAGAAAAAGGAATATGAATTGGG 59.711 37.037 0.00 0.00 39.15 4.12
545 647 8.242729 AGCCTAGAAAAAGGAATATGAATTGG 57.757 34.615 0.00 0.00 39.15 3.16
546 648 9.741647 GAAGCCTAGAAAAAGGAATATGAATTG 57.258 33.333 0.00 0.00 39.15 2.32
547 649 8.624776 CGAAGCCTAGAAAAAGGAATATGAATT 58.375 33.333 0.00 0.00 39.15 2.17
548 650 7.775561 ACGAAGCCTAGAAAAAGGAATATGAAT 59.224 33.333 0.00 0.00 39.15 2.57
549 651 7.065803 CACGAAGCCTAGAAAAAGGAATATGAA 59.934 37.037 0.00 0.00 39.15 2.57
550 652 6.538742 CACGAAGCCTAGAAAAAGGAATATGA 59.461 38.462 0.00 0.00 39.15 2.15
551 653 6.238484 CCACGAAGCCTAGAAAAAGGAATATG 60.238 42.308 0.00 0.00 39.15 1.78
552 654 5.823045 CCACGAAGCCTAGAAAAAGGAATAT 59.177 40.000 0.00 0.00 39.15 1.28
553 655 5.183228 CCACGAAGCCTAGAAAAAGGAATA 58.817 41.667 0.00 0.00 39.15 1.75
554 656 4.010349 CCACGAAGCCTAGAAAAAGGAAT 58.990 43.478 0.00 0.00 39.15 3.01
555 657 3.408634 CCACGAAGCCTAGAAAAAGGAA 58.591 45.455 0.00 0.00 39.15 3.36
556 658 2.290071 CCCACGAAGCCTAGAAAAAGGA 60.290 50.000 0.00 0.00 39.15 3.36
557 659 2.084546 CCCACGAAGCCTAGAAAAAGG 58.915 52.381 0.00 0.00 39.87 3.11
558 660 1.468914 GCCCACGAAGCCTAGAAAAAG 59.531 52.381 0.00 0.00 0.00 2.27
559 661 1.073284 AGCCCACGAAGCCTAGAAAAA 59.927 47.619 0.00 0.00 0.00 1.94
560 662 0.690762 AGCCCACGAAGCCTAGAAAA 59.309 50.000 0.00 0.00 0.00 2.29
561 663 0.690762 AAGCCCACGAAGCCTAGAAA 59.309 50.000 0.00 0.00 0.00 2.52
562 664 0.690762 AAAGCCCACGAAGCCTAGAA 59.309 50.000 0.00 0.00 0.00 2.10
563 665 0.036388 CAAAGCCCACGAAGCCTAGA 60.036 55.000 0.00 0.00 0.00 2.43
564 666 1.648467 GCAAAGCCCACGAAGCCTAG 61.648 60.000 0.00 0.00 0.00 3.02
565 667 1.674322 GCAAAGCCCACGAAGCCTA 60.674 57.895 0.00 0.00 0.00 3.93
566 668 2.985847 GCAAAGCCCACGAAGCCT 60.986 61.111 0.00 0.00 0.00 4.58
567 669 2.158561 AATGCAAAGCCCACGAAGCC 62.159 55.000 0.00 0.00 0.00 4.35
568 670 0.525761 TAATGCAAAGCCCACGAAGC 59.474 50.000 0.00 0.00 0.00 3.86
569 671 1.468054 GCTAATGCAAAGCCCACGAAG 60.468 52.381 12.24 0.00 39.41 3.79
570 672 0.525761 GCTAATGCAAAGCCCACGAA 59.474 50.000 12.24 0.00 39.41 3.85
571 673 2.179764 GCTAATGCAAAGCCCACGA 58.820 52.632 12.24 0.00 39.41 4.35
572 674 4.792106 GCTAATGCAAAGCCCACG 57.208 55.556 12.24 0.00 39.41 4.94
582 684 4.620982 AGTGAAAACCTTGTTGCTAATGC 58.379 39.130 0.00 0.00 40.20 3.56
583 685 4.911610 CGAGTGAAAACCTTGTTGCTAATG 59.088 41.667 0.00 0.00 0.00 1.90
584 686 4.556699 GCGAGTGAAAACCTTGTTGCTAAT 60.557 41.667 0.00 0.00 0.00 1.73
585 687 3.242936 GCGAGTGAAAACCTTGTTGCTAA 60.243 43.478 0.00 0.00 0.00 3.09
586 688 2.289547 GCGAGTGAAAACCTTGTTGCTA 59.710 45.455 0.00 0.00 0.00 3.49
587 689 1.065551 GCGAGTGAAAACCTTGTTGCT 59.934 47.619 0.00 0.00 0.00 3.91
588 690 1.477105 GCGAGTGAAAACCTTGTTGC 58.523 50.000 0.00 0.00 0.00 4.17
589 691 1.329292 TCGCGAGTGAAAACCTTGTTG 59.671 47.619 3.71 0.00 0.00 3.33
590 692 1.329599 GTCGCGAGTGAAAACCTTGTT 59.670 47.619 10.24 0.00 0.00 2.83
591 693 0.935196 GTCGCGAGTGAAAACCTTGT 59.065 50.000 10.24 0.00 0.00 3.16
592 694 0.934496 TGTCGCGAGTGAAAACCTTG 59.066 50.000 10.24 0.00 0.00 3.61
593 695 1.658994 TTGTCGCGAGTGAAAACCTT 58.341 45.000 10.24 0.00 0.00 3.50
594 696 1.878953 ATTGTCGCGAGTGAAAACCT 58.121 45.000 10.24 0.00 0.00 3.50
595 697 2.735134 AGTATTGTCGCGAGTGAAAACC 59.265 45.455 10.24 0.00 0.00 3.27
596 698 3.479866 CGAGTATTGTCGCGAGTGAAAAC 60.480 47.826 10.24 3.43 32.22 2.43
597 699 2.659757 CGAGTATTGTCGCGAGTGAAAA 59.340 45.455 10.24 0.00 32.22 2.29
598 700 2.095617 TCGAGTATTGTCGCGAGTGAAA 60.096 45.455 10.24 2.01 39.90 2.69
599 701 1.465777 TCGAGTATTGTCGCGAGTGAA 59.534 47.619 10.24 2.85 39.90 3.18
600 702 1.081094 TCGAGTATTGTCGCGAGTGA 58.919 50.000 10.24 0.00 39.90 3.41
601 703 2.037649 GATCGAGTATTGTCGCGAGTG 58.962 52.381 10.24 0.00 41.99 3.51
602 704 1.332993 CGATCGAGTATTGTCGCGAGT 60.333 52.381 10.24 0.58 41.99 4.18
603 705 1.310018 CGATCGAGTATTGTCGCGAG 58.690 55.000 10.24 0.00 41.99 5.03
604 706 0.041576 CCGATCGAGTATTGTCGCGA 60.042 55.000 18.66 3.71 42.73 5.87
605 707 0.316772 ACCGATCGAGTATTGTCGCG 60.317 55.000 18.66 0.00 39.90 5.87
606 708 1.779724 GAACCGATCGAGTATTGTCGC 59.220 52.381 18.66 0.00 39.90 5.19
618 720 3.467226 TCCCAGCCCGAACCGATC 61.467 66.667 0.00 0.00 0.00 3.69
619 721 3.782443 GTCCCAGCCCGAACCGAT 61.782 66.667 0.00 0.00 0.00 4.18
621 723 3.622060 AATGTCCCAGCCCGAACCG 62.622 63.158 0.00 0.00 0.00 4.44
622 724 0.898326 AAAATGTCCCAGCCCGAACC 60.898 55.000 0.00 0.00 0.00 3.62
623 725 0.526211 GAAAATGTCCCAGCCCGAAC 59.474 55.000 0.00 0.00 0.00 3.95
624 726 0.111446 TGAAAATGTCCCAGCCCGAA 59.889 50.000 0.00 0.00 0.00 4.30
625 727 0.322456 CTGAAAATGTCCCAGCCCGA 60.322 55.000 0.00 0.00 0.00 5.14
626 728 0.322456 TCTGAAAATGTCCCAGCCCG 60.322 55.000 0.00 0.00 0.00 6.13
627 729 2.027385 GATCTGAAAATGTCCCAGCCC 58.973 52.381 0.00 0.00 0.00 5.19
628 730 1.672881 CGATCTGAAAATGTCCCAGCC 59.327 52.381 0.00 0.00 0.00 4.85
629 731 2.632377 TCGATCTGAAAATGTCCCAGC 58.368 47.619 0.00 0.00 0.00 4.85
630 732 4.002982 TGTTCGATCTGAAAATGTCCCAG 58.997 43.478 2.31 0.00 38.60 4.45
631 733 4.014569 TGTTCGATCTGAAAATGTCCCA 57.985 40.909 2.31 0.00 38.60 4.37
632 734 5.371115 TTTGTTCGATCTGAAAATGTCCC 57.629 39.130 2.31 0.00 38.60 4.46
633 735 6.249260 CGATTTTGTTCGATCTGAAAATGTCC 59.751 38.462 8.46 0.00 41.62 4.02
634 736 6.797033 ACGATTTTGTTCGATCTGAAAATGTC 59.203 34.615 8.46 0.00 41.62 3.06
635 737 6.668323 ACGATTTTGTTCGATCTGAAAATGT 58.332 32.000 8.46 5.80 41.62 2.71
636 738 7.552848 AACGATTTTGTTCGATCTGAAAATG 57.447 32.000 8.46 5.39 41.62 2.32
637 739 7.781763 GAACGATTTTGTTCGATCTGAAAAT 57.218 32.000 0.31 4.91 41.62 1.82
656 758 1.454295 TGGGGGATCGATCGAACGA 60.454 57.895 23.50 20.25 46.04 3.85
657 759 1.299926 GTGGGGGATCGATCGAACG 60.300 63.158 23.50 9.01 0.00 3.95
658 760 0.464452 AAGTGGGGGATCGATCGAAC 59.536 55.000 23.50 19.61 0.00 3.95
659 761 0.750850 GAAGTGGGGGATCGATCGAA 59.249 55.000 23.50 5.77 0.00 3.71
660 762 1.113517 GGAAGTGGGGGATCGATCGA 61.114 60.000 21.86 21.86 0.00 3.59
661 763 1.115930 AGGAAGTGGGGGATCGATCG 61.116 60.000 18.81 9.36 0.00 3.69
662 764 0.394565 CAGGAAGTGGGGGATCGATC 59.605 60.000 17.36 17.36 0.00 3.69
663 765 1.700042 GCAGGAAGTGGGGGATCGAT 61.700 60.000 0.00 0.00 0.00 3.59
664 766 2.367202 GCAGGAAGTGGGGGATCGA 61.367 63.158 0.00 0.00 0.00 3.59
665 767 2.190578 GCAGGAAGTGGGGGATCG 59.809 66.667 0.00 0.00 0.00 3.69
666 768 2.597903 GGCAGGAAGTGGGGGATC 59.402 66.667 0.00 0.00 0.00 3.36
667 769 3.411517 CGGCAGGAAGTGGGGGAT 61.412 66.667 0.00 0.00 0.00 3.85
668 770 4.649705 TCGGCAGGAAGTGGGGGA 62.650 66.667 0.00 0.00 0.00 4.81
669 771 3.646715 TTCGGCAGGAAGTGGGGG 61.647 66.667 0.00 0.00 0.00 5.40
670 772 2.359975 GTTCGGCAGGAAGTGGGG 60.360 66.667 0.00 0.00 34.69 4.96
671 773 2.521958 ATCGTTCGGCAGGAAGTGGG 62.522 60.000 0.00 0.00 34.69 4.61
672 774 0.673644 AATCGTTCGGCAGGAAGTGG 60.674 55.000 0.00 0.00 34.69 4.00
673 775 0.721718 GAATCGTTCGGCAGGAAGTG 59.278 55.000 0.00 0.00 34.69 3.16
674 776 3.139029 GAATCGTTCGGCAGGAAGT 57.861 52.632 0.00 0.00 34.69 3.01
688 790 1.814169 GTCCCAGCCCGAACGAATC 60.814 63.158 0.00 0.00 0.00 2.52
689 791 1.910580 ATGTCCCAGCCCGAACGAAT 61.911 55.000 0.00 0.00 0.00 3.34
690 792 2.515996 GATGTCCCAGCCCGAACGAA 62.516 60.000 0.00 0.00 0.00 3.85
691 793 3.000819 ATGTCCCAGCCCGAACGA 61.001 61.111 0.00 0.00 0.00 3.85
692 794 2.511600 GATGTCCCAGCCCGAACG 60.512 66.667 0.00 0.00 0.00 3.95
693 795 2.124695 GGATGTCCCAGCCCGAAC 60.125 66.667 0.00 0.00 33.26 3.95
703 805 1.296056 CGTTCGGTGTTGGGATGTCC 61.296 60.000 0.00 0.00 0.00 4.02
704 806 0.601841 ACGTTCGGTGTTGGGATGTC 60.602 55.000 0.00 0.00 0.00 3.06
705 807 0.179040 AACGTTCGGTGTTGGGATGT 60.179 50.000 0.00 0.00 0.00 3.06
706 808 0.515564 GAACGTTCGGTGTTGGGATG 59.484 55.000 13.36 0.00 0.00 3.51
707 809 0.947180 CGAACGTTCGGTGTTGGGAT 60.947 55.000 36.53 0.00 46.30 3.85
708 810 1.592131 CGAACGTTCGGTGTTGGGA 60.592 57.895 36.53 0.00 46.30 4.37
709 811 2.932905 CGAACGTTCGGTGTTGGG 59.067 61.111 36.53 11.49 46.30 4.12
718 820 1.254570 GTCGATATGTGCCGAACGTTC 59.745 52.381 18.47 18.47 36.50 3.95
719 821 1.274596 GTCGATATGTGCCGAACGTT 58.725 50.000 0.00 0.00 36.50 3.99
720 822 0.864377 CGTCGATATGTGCCGAACGT 60.864 55.000 0.00 0.00 36.50 3.99
721 823 0.864377 ACGTCGATATGTGCCGAACG 60.864 55.000 0.00 0.00 36.50 3.95
722 824 0.844503 GACGTCGATATGTGCCGAAC 59.155 55.000 0.00 0.00 36.50 3.95
723 825 0.248743 GGACGTCGATATGTGCCGAA 60.249 55.000 9.92 0.00 36.50 4.30
724 826 1.357690 GGACGTCGATATGTGCCGA 59.642 57.895 9.92 0.00 0.00 5.54
725 827 0.526739 TTGGACGTCGATATGTGCCG 60.527 55.000 9.92 0.00 32.29 5.69
726 828 1.647346 TTTGGACGTCGATATGTGCC 58.353 50.000 9.92 0.00 32.29 5.01
727 829 3.369756 TCTTTTTGGACGTCGATATGTGC 59.630 43.478 9.92 0.00 33.80 4.57
728 830 5.524511 TTCTTTTTGGACGTCGATATGTG 57.475 39.130 9.92 0.00 0.00 3.21
729 831 5.121768 CCTTTCTTTTTGGACGTCGATATGT 59.878 40.000 9.92 0.00 0.00 2.29
730 832 5.350365 TCCTTTCTTTTTGGACGTCGATATG 59.650 40.000 9.92 0.28 0.00 1.78
731 833 5.484715 TCCTTTCTTTTTGGACGTCGATAT 58.515 37.500 9.92 0.00 0.00 1.63
732 834 4.885413 TCCTTTCTTTTTGGACGTCGATA 58.115 39.130 9.92 0.00 0.00 2.92
733 835 3.735591 TCCTTTCTTTTTGGACGTCGAT 58.264 40.909 9.92 0.00 0.00 3.59
734 836 3.182341 TCCTTTCTTTTTGGACGTCGA 57.818 42.857 9.92 1.86 0.00 4.20
735 837 3.955771 TTCCTTTCTTTTTGGACGTCG 57.044 42.857 9.92 0.00 0.00 5.12
736 838 4.444388 GCAATTCCTTTCTTTTTGGACGTC 59.556 41.667 7.13 7.13 0.00 4.34
737 839 4.142049 TGCAATTCCTTTCTTTTTGGACGT 60.142 37.500 0.00 0.00 0.00 4.34
738 840 4.209080 GTGCAATTCCTTTCTTTTTGGACG 59.791 41.667 0.00 0.00 30.83 4.79
739 841 4.209080 CGTGCAATTCCTTTCTTTTTGGAC 59.791 41.667 0.00 0.00 35.91 4.02
740 842 4.098654 TCGTGCAATTCCTTTCTTTTTGGA 59.901 37.500 0.00 0.00 0.00 3.53
741 843 4.367450 TCGTGCAATTCCTTTCTTTTTGG 58.633 39.130 0.00 0.00 0.00 3.28
742 844 5.173854 GTCTCGTGCAATTCCTTTCTTTTTG 59.826 40.000 0.00 0.00 0.00 2.44
743 845 5.163561 TGTCTCGTGCAATTCCTTTCTTTTT 60.164 36.000 0.00 0.00 0.00 1.94
744 846 4.338118 TGTCTCGTGCAATTCCTTTCTTTT 59.662 37.500 0.00 0.00 0.00 2.27
745 847 3.882888 TGTCTCGTGCAATTCCTTTCTTT 59.117 39.130 0.00 0.00 0.00 2.52
746 848 3.251004 GTGTCTCGTGCAATTCCTTTCTT 59.749 43.478 0.00 0.00 0.00 2.52
747 849 2.808543 GTGTCTCGTGCAATTCCTTTCT 59.191 45.455 0.00 0.00 0.00 2.52
748 850 2.808543 AGTGTCTCGTGCAATTCCTTTC 59.191 45.455 0.00 0.00 0.00 2.62
749 851 2.549754 CAGTGTCTCGTGCAATTCCTTT 59.450 45.455 0.00 0.00 0.00 3.11
750 852 2.146342 CAGTGTCTCGTGCAATTCCTT 58.854 47.619 0.00 0.00 0.00 3.36
751 853 1.800805 CAGTGTCTCGTGCAATTCCT 58.199 50.000 0.00 0.00 0.00 3.36
779 881 2.434359 GTAGTGGCCAGGCACGAC 60.434 66.667 18.76 18.76 0.00 4.34
815 917 6.183360 CCATTAATCAACCACTTCTGCATCAT 60.183 38.462 0.00 0.00 0.00 2.45
839 941 0.717784 GCACTTAACTAACGCGTCCC 59.282 55.000 14.44 0.00 0.00 4.46
850 952 4.319839 GCTTTGGAGAGTGAAGCACTTAAC 60.320 45.833 1.18 0.00 45.44 2.01
868 970 2.174349 GTCTTCTGCGCCGCTTTG 59.826 61.111 11.67 0.34 0.00 2.77
869 971 2.280797 TGTCTTCTGCGCCGCTTT 60.281 55.556 11.67 0.00 0.00 3.51
937 1051 2.294233 CAGAATACAAATGGATGCGGGG 59.706 50.000 0.00 0.00 0.00 5.73
951 1065 1.555075 TGGTGTGGAGGAGCAGAATAC 59.445 52.381 0.00 0.00 0.00 1.89
957 1071 1.691195 TTTCGTGGTGTGGAGGAGCA 61.691 55.000 0.00 0.00 0.00 4.26
975 1089 1.539929 GCCGATGCTATGAGTCTGCTT 60.540 52.381 0.00 0.00 33.53 3.91
977 1091 1.280886 CGCCGATGCTATGAGTCTGC 61.281 60.000 0.00 0.00 34.43 4.26
1023 1151 0.107654 CGAAGTTGGATGGGAGGGAC 60.108 60.000 0.00 0.00 0.00 4.46
1083 1211 2.031807 CCGGAGTGTCATGTAGTAGTCG 59.968 54.545 0.00 0.00 0.00 4.18
1201 1487 0.109689 GAGTCTTGGTCGACGTCTGG 60.110 60.000 14.70 0.00 38.90 3.86
1202 1488 0.109689 GGAGTCTTGGTCGACGTCTG 60.110 60.000 14.70 7.51 38.90 3.51
1203 1489 1.242665 GGGAGTCTTGGTCGACGTCT 61.243 60.000 14.70 3.07 38.90 4.18
1204 1490 1.212229 GGGAGTCTTGGTCGACGTC 59.788 63.158 9.92 5.18 38.90 4.34
1221 1507 1.219393 GAGGTTGAGGAAGAGGCGG 59.781 63.158 0.00 0.00 0.00 6.13
1224 1510 1.067495 GTGTCGAGGTTGAGGAAGAGG 60.067 57.143 0.00 0.00 0.00 3.69
1290 1576 3.849951 CTGGCCGTGGCGAGGTAT 61.850 66.667 14.42 0.00 42.09 2.73
1324 1610 1.270732 CCTGCACATATCAGGCTCCTC 60.271 57.143 0.00 0.00 43.88 3.71
1389 1675 4.722700 GGATGCACCGGTGGCACT 62.723 66.667 34.58 20.36 45.23 4.40
1398 1684 1.450312 CCTGTCGAAGGGATGCACC 60.450 63.158 0.00 0.00 43.15 5.01
1475 1761 3.480133 GGTCGGCCCATGCTAGGT 61.480 66.667 0.00 0.00 37.74 3.08
1629 1915 1.198637 GTGATCTGAGGCTTGTTGTGC 59.801 52.381 0.00 0.00 0.00 4.57
1756 2042 1.152419 TCACGAGGTCCACCCTGAA 60.152 57.895 0.00 0.00 46.51 3.02
1791 2077 0.165944 GGTTTCCGATGCTGTTGACG 59.834 55.000 0.00 0.00 0.00 4.35
1974 2261 1.412710 GTGTGCGGGATAATCCTCTCA 59.587 52.381 0.00 0.00 36.57 3.27
2058 2345 1.299648 GCCCATGCAGTAGGACACA 59.700 57.895 3.72 0.00 37.47 3.72
2094 2381 2.217750 TGTCTAGCATTTGTGTTGCGT 58.782 42.857 0.00 0.00 44.82 5.24
2143 2434 9.545105 AACATCACAGAAATTCATTAAGCAAAA 57.455 25.926 0.00 0.00 0.00 2.44
2147 2438 7.427606 CGAGAACATCACAGAAATTCATTAAGC 59.572 37.037 0.00 0.00 0.00 3.09
2151 2442 5.124457 CCCGAGAACATCACAGAAATTCATT 59.876 40.000 0.00 0.00 0.00 2.57
2164 2455 5.629079 AACAAATCTTTCCCGAGAACATC 57.371 39.130 0.00 0.00 0.00 3.06
2215 2506 0.246635 AATCTCAACCCCACTCGACG 59.753 55.000 0.00 0.00 0.00 5.12
2216 2507 2.076863 CAAATCTCAACCCCACTCGAC 58.923 52.381 0.00 0.00 0.00 4.20
2241 2532 2.414559 CGATTTCACAGCAACCATGGTC 60.415 50.000 20.07 6.67 34.35 4.02
2266 2558 0.896923 TGACTTGCCCAAATGGATGC 59.103 50.000 0.00 0.00 37.39 3.91
2279 2571 0.233848 GTACGTTTGGGCGTGACTTG 59.766 55.000 0.00 0.00 45.33 3.16
2280 2572 0.179078 TGTACGTTTGGGCGTGACTT 60.179 50.000 0.00 0.00 45.33 3.01
2281 2573 0.599204 CTGTACGTTTGGGCGTGACT 60.599 55.000 0.00 0.00 45.33 3.41
2282 2574 0.877213 ACTGTACGTTTGGGCGTGAC 60.877 55.000 0.00 0.00 45.33 3.67
2284 2576 1.567537 CACTGTACGTTTGGGCGTG 59.432 57.895 0.00 0.00 45.33 5.34
2286 2578 1.595929 ACCACTGTACGTTTGGGCG 60.596 57.895 10.91 0.00 34.41 6.13
2299 3556 0.544357 TGGCTACCTACAGCACCACT 60.544 55.000 0.00 0.00 43.67 4.00
2300 3557 0.323629 TTGGCTACCTACAGCACCAC 59.676 55.000 0.00 0.00 43.67 4.16
2301 3558 1.285280 ATTGGCTACCTACAGCACCA 58.715 50.000 0.00 0.00 43.67 4.17
2302 3559 2.484947 GGTATTGGCTACCTACAGCACC 60.485 54.545 0.00 0.00 45.70 5.01
2303 3560 2.835027 GGTATTGGCTACCTACAGCAC 58.165 52.381 0.00 0.00 45.70 4.40
2312 3569 3.898123 TGAGATCAGAGGGTATTGGCTAC 59.102 47.826 0.00 0.00 0.00 3.58
2313 3570 4.199002 TGAGATCAGAGGGTATTGGCTA 57.801 45.455 0.00 0.00 0.00 3.93
2314 3571 3.051940 TGAGATCAGAGGGTATTGGCT 57.948 47.619 0.00 0.00 0.00 4.75
2315 3572 3.135530 ACTTGAGATCAGAGGGTATTGGC 59.864 47.826 0.00 0.00 0.00 4.52
2645 3902 5.191727 TGGTTCATGATCTATGTGGGTTT 57.808 39.130 0.00 0.00 38.01 3.27
2646 3903 4.860802 TGGTTCATGATCTATGTGGGTT 57.139 40.909 0.00 0.00 38.01 4.11
2647 3904 4.860802 TTGGTTCATGATCTATGTGGGT 57.139 40.909 0.00 0.00 38.01 4.51
2648 3905 6.720112 ATTTTGGTTCATGATCTATGTGGG 57.280 37.500 0.00 0.00 38.01 4.61
2649 3906 8.875803 CAAAATTTTGGTTCATGATCTATGTGG 58.124 33.333 21.00 0.00 35.13 4.17
2650 3907 9.642327 TCAAAATTTTGGTTCATGATCTATGTG 57.358 29.630 26.45 0.00 38.66 3.21
2663 3920 5.700373 CGGTCCATGAATCAAAATTTTGGTT 59.300 36.000 25.65 25.65 43.70 3.67
2664 3921 5.221621 ACGGTCCATGAATCAAAATTTTGGT 60.222 36.000 26.45 19.61 38.66 3.67
2665 3922 5.237048 ACGGTCCATGAATCAAAATTTTGG 58.763 37.500 26.45 12.73 38.66 3.28
2670 3927 3.831911 ACCAACGGTCCATGAATCAAAAT 59.168 39.130 0.00 0.00 0.00 1.82
2672 3929 2.870175 ACCAACGGTCCATGAATCAAA 58.130 42.857 0.00 0.00 0.00 2.69
2679 3936 5.123227 ACTCAAATATACCAACGGTCCATG 58.877 41.667 0.00 0.00 37.09 3.66
2682 3939 4.573607 GGAACTCAAATATACCAACGGTCC 59.426 45.833 0.00 0.00 37.09 4.46
2683 3940 5.425630 AGGAACTCAAATATACCAACGGTC 58.574 41.667 0.00 0.00 37.09 4.79
2685 3942 5.646360 ACAAGGAACTCAAATATACCAACGG 59.354 40.000 0.00 0.00 38.49 4.44
2686 3943 6.403200 CCACAAGGAACTCAAATATACCAACG 60.403 42.308 0.00 0.00 38.49 4.10
2687 3944 6.127730 CCCACAAGGAACTCAAATATACCAAC 60.128 42.308 0.00 0.00 38.49 3.77
2688 3945 5.949354 CCCACAAGGAACTCAAATATACCAA 59.051 40.000 0.00 0.00 38.49 3.67
2689 3946 5.251932 TCCCACAAGGAACTCAAATATACCA 59.748 40.000 0.00 0.00 43.78 3.25
2690 3947 5.751586 TCCCACAAGGAACTCAAATATACC 58.248 41.667 0.00 0.00 43.78 2.73
2703 3960 1.938585 AAGATCTCGTCCCACAAGGA 58.061 50.000 0.00 0.00 44.91 3.36
2704 3961 2.028112 TGAAAGATCTCGTCCCACAAGG 60.028 50.000 0.00 0.00 0.00 3.61
2705 3962 3.319137 TGAAAGATCTCGTCCCACAAG 57.681 47.619 0.00 0.00 0.00 3.16
2706 3963 3.762407 TTGAAAGATCTCGTCCCACAA 57.238 42.857 0.00 0.00 0.00 3.33
2707 3964 3.181459 TGTTTGAAAGATCTCGTCCCACA 60.181 43.478 0.00 0.28 0.00 4.17
2708 3965 3.399330 TGTTTGAAAGATCTCGTCCCAC 58.601 45.455 0.00 0.00 0.00 4.61
2709 3966 3.762407 TGTTTGAAAGATCTCGTCCCA 57.238 42.857 0.00 0.00 0.00 4.37
2710 3967 4.152580 GTCTTGTTTGAAAGATCTCGTCCC 59.847 45.833 0.00 0.00 38.41 4.46
2711 3968 4.152580 GGTCTTGTTTGAAAGATCTCGTCC 59.847 45.833 0.00 0.00 38.41 4.79
2712 3969 4.143305 CGGTCTTGTTTGAAAGATCTCGTC 60.143 45.833 0.00 0.00 38.41 4.20
2714 3971 3.123621 CCGGTCTTGTTTGAAAGATCTCG 59.876 47.826 0.00 0.00 38.41 4.04
2715 3972 3.120165 GCCGGTCTTGTTTGAAAGATCTC 60.120 47.826 1.90 0.00 38.41 2.75
2716 3973 2.814336 GCCGGTCTTGTTTGAAAGATCT 59.186 45.455 1.90 0.00 38.41 2.75
2717 3974 2.095212 GGCCGGTCTTGTTTGAAAGATC 60.095 50.000 1.90 0.00 38.41 2.75
2718 3975 1.886542 GGCCGGTCTTGTTTGAAAGAT 59.113 47.619 1.90 0.00 38.41 2.40
2719 3976 1.314730 GGCCGGTCTTGTTTGAAAGA 58.685 50.000 1.90 0.00 33.77 2.52
2720 3977 0.040425 CGGCCGGTCTTGTTTGAAAG 60.040 55.000 20.10 0.00 0.00 2.62
2721 3978 2.026522 CGGCCGGTCTTGTTTGAAA 58.973 52.632 20.10 0.00 0.00 2.69
2722 3979 2.548295 GCGGCCGGTCTTGTTTGAA 61.548 57.895 29.38 0.00 0.00 2.69
2723 3980 2.975799 GCGGCCGGTCTTGTTTGA 60.976 61.111 29.38 0.00 0.00 2.69
2725 3982 2.517402 TTGCGGCCGGTCTTGTTT 60.517 55.556 29.38 0.00 0.00 2.83
2728 3985 0.179094 TATAGTTGCGGCCGGTCTTG 60.179 55.000 29.38 0.00 0.00 3.02
2729 3986 0.756903 ATATAGTTGCGGCCGGTCTT 59.243 50.000 29.38 3.94 0.00 3.01
2730 3987 0.756903 AATATAGTTGCGGCCGGTCT 59.243 50.000 29.38 10.04 0.00 3.85
2731 3988 1.529865 GAAATATAGTTGCGGCCGGTC 59.470 52.381 29.38 12.09 0.00 4.79
2732 3989 1.134340 TGAAATATAGTTGCGGCCGGT 60.134 47.619 29.38 0.00 0.00 5.28
2733 3990 1.531149 CTGAAATATAGTTGCGGCCGG 59.469 52.381 29.38 8.95 0.00 6.13
2734 3991 2.032894 CACTGAAATATAGTTGCGGCCG 60.033 50.000 24.05 24.05 0.00 6.13
2735 3992 3.202906 TCACTGAAATATAGTTGCGGCC 58.797 45.455 0.00 0.00 0.00 6.13
2736 3993 4.875544 TTCACTGAAATATAGTTGCGGC 57.124 40.909 0.00 0.00 0.00 6.53
2737 3994 7.471721 TCAAATTCACTGAAATATAGTTGCGG 58.528 34.615 0.00 0.00 0.00 5.69
2738 3995 8.894409 TTCAAATTCACTGAAATATAGTTGCG 57.106 30.769 0.00 0.00 29.93 4.85
2739 3996 8.801913 GCTTCAAATTCACTGAAATATAGTTGC 58.198 33.333 0.00 0.00 32.57 4.17
2740 3997 9.844790 TGCTTCAAATTCACTGAAATATAGTTG 57.155 29.630 0.00 0.00 32.57 3.16
2747 4004 9.932207 TTTATCATGCTTCAAATTCACTGAAAT 57.068 25.926 0.00 0.00 32.57 2.17
2748 4005 9.761504 TTTTATCATGCTTCAAATTCACTGAAA 57.238 25.926 0.00 0.00 32.57 2.69
2749 4006 9.195411 GTTTTATCATGCTTCAAATTCACTGAA 57.805 29.630 0.00 0.00 0.00 3.02
2750 4007 8.579006 AGTTTTATCATGCTTCAAATTCACTGA 58.421 29.630 0.00 0.00 0.00 3.41
2751 4008 8.752766 AGTTTTATCATGCTTCAAATTCACTG 57.247 30.769 0.00 0.00 0.00 3.66
2777 4034 9.732130 AAGCAAGTCTAAGAATCAGAGTTTTAT 57.268 29.630 0.00 0.00 34.21 1.40
2778 4035 9.209175 GAAGCAAGTCTAAGAATCAGAGTTTTA 57.791 33.333 0.00 0.00 34.21 1.52
2779 4036 7.716998 TGAAGCAAGTCTAAGAATCAGAGTTTT 59.283 33.333 0.00 0.00 34.21 2.43
2780 4037 7.172361 GTGAAGCAAGTCTAAGAATCAGAGTTT 59.828 37.037 0.00 0.00 34.21 2.66
2781 4038 6.648725 GTGAAGCAAGTCTAAGAATCAGAGTT 59.351 38.462 0.00 0.00 36.35 3.01
2782 4039 6.162777 GTGAAGCAAGTCTAAGAATCAGAGT 58.837 40.000 0.00 0.00 0.00 3.24
2783 4040 5.288232 CGTGAAGCAAGTCTAAGAATCAGAG 59.712 44.000 0.00 0.00 0.00 3.35
2784 4041 5.164233 CGTGAAGCAAGTCTAAGAATCAGA 58.836 41.667 0.00 0.00 0.00 3.27
2785 4042 4.926238 ACGTGAAGCAAGTCTAAGAATCAG 59.074 41.667 0.00 0.00 0.00 2.90
2786 4043 4.883083 ACGTGAAGCAAGTCTAAGAATCA 58.117 39.130 0.00 0.00 0.00 2.57
2787 4044 4.923871 TGACGTGAAGCAAGTCTAAGAATC 59.076 41.667 13.09 0.00 41.87 2.52
2788 4045 4.883083 TGACGTGAAGCAAGTCTAAGAAT 58.117 39.130 13.09 0.00 41.87 2.40
2789 4046 4.316205 TGACGTGAAGCAAGTCTAAGAA 57.684 40.909 13.09 0.00 41.87 2.52
2790 4047 4.299155 CTTGACGTGAAGCAAGTCTAAGA 58.701 43.478 0.73 0.00 41.87 2.10
2791 4048 3.120854 GCTTGACGTGAAGCAAGTCTAAG 60.121 47.826 30.87 13.93 46.46 2.18
2792 4049 2.800544 GCTTGACGTGAAGCAAGTCTAA 59.199 45.455 30.87 6.62 46.46 2.10
2793 4050 2.404215 GCTTGACGTGAAGCAAGTCTA 58.596 47.619 30.87 6.34 46.46 2.59
2794 4051 1.221414 GCTTGACGTGAAGCAAGTCT 58.779 50.000 30.87 0.00 46.46 3.24
2795 4052 3.736581 GCTTGACGTGAAGCAAGTC 57.263 52.632 30.87 12.42 46.46 3.01
2801 4058 3.026630 TCCAACTAGCTTGACGTGAAG 57.973 47.619 10.68 10.68 30.42 3.02
2802 4059 3.678056 ATCCAACTAGCTTGACGTGAA 57.322 42.857 1.04 0.00 30.42 3.18
2803 4060 4.401202 TGATATCCAACTAGCTTGACGTGA 59.599 41.667 1.04 0.00 30.42 4.35
2805 4062 5.163405 ACATGATATCCAACTAGCTTGACGT 60.163 40.000 0.00 0.00 30.42 4.34
2809 4066 6.258727 ACGAAACATGATATCCAACTAGCTTG 59.741 38.462 0.00 0.00 0.00 4.01
2812 4069 6.924060 ACTACGAAACATGATATCCAACTAGC 59.076 38.462 0.00 0.00 0.00 3.42
2814 4071 7.778083 ACACTACGAAACATGATATCCAACTA 58.222 34.615 0.00 0.00 0.00 2.24
2816 4073 6.903883 ACACTACGAAACATGATATCCAAC 57.096 37.500 0.00 0.00 0.00 3.77
2819 4076 7.060748 CACGATACACTACGAAACATGATATCC 59.939 40.741 0.00 0.00 0.00 2.59
2841 4098 8.325282 CGCTAAACAAAATATAGAACATCACGA 58.675 33.333 0.00 0.00 0.00 4.35
2845 4102 7.908082 TGCACGCTAAACAAAATATAGAACATC 59.092 33.333 0.00 0.00 0.00 3.06
2866 4123 5.401972 ACACAATGAAACATTAACATGCACG 59.598 36.000 0.00 0.00 33.05 5.34
2919 4176 6.714810 ACCATGTTCTAGTGCACATAGAAAAA 59.285 34.615 26.38 21.03 40.11 1.94
2920 4177 6.237901 ACCATGTTCTAGTGCACATAGAAAA 58.762 36.000 26.38 23.82 40.11 2.29
2921 4178 5.804639 ACCATGTTCTAGTGCACATAGAAA 58.195 37.500 26.38 20.11 40.11 2.52
2922 4179 5.420725 ACCATGTTCTAGTGCACATAGAA 57.579 39.130 23.43 23.43 37.01 2.10
2923 4180 5.656859 ACTACCATGTTCTAGTGCACATAGA 59.343 40.000 21.04 18.53 32.16 1.98
2924 4181 5.750547 CACTACCATGTTCTAGTGCACATAG 59.249 44.000 21.04 16.63 34.92 2.23
2925 4182 5.186992 ACACTACCATGTTCTAGTGCACATA 59.813 40.000 21.04 7.67 42.48 2.29
2967 4224 4.323417 ACTTGTTTCATGGACGCAGAATA 58.677 39.130 0.00 0.00 0.00 1.75
2977 4234 7.978975 TCTTGTTTAAAAGGACTTGTTTCATGG 59.021 33.333 0.00 0.00 0.00 3.66
2982 4239 7.234661 TGGTCTTGTTTAAAAGGACTTGTTT 57.765 32.000 12.79 0.00 0.00 2.83
2986 4243 7.654022 TGATTGGTCTTGTTTAAAAGGACTT 57.346 32.000 12.79 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.