>input_sequence_61170
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-------ATGGCCATGGCGGCGGACTGGTCGTCCCTCCCATCCAACTTCGTCCGCGCCGTCGCCGACGTCTTCCTCGCCA
CCACCGACCTCGACTACTA-------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CATGACACTCCGGAGCGTGTGCCACGGCTGGCGAGCCGCGACCGCCGACCCGCACGGCACCGA
CCCCCGCTTTCACCCCCGCCGGTGGATCATGCTCGAGGAGACCCGGCCAGACGTCGACCAAGACTCCCGCCTCTTCCTCA
ACCTCGACACCGGGCGTTTCCTGCGGAAACGCCTCTCCGTGCTACGCAGCTACACATACCTCGCCACGGCCAGTGGCCTG
CTCGTCCTGGAGGAGCCTGATATGTGCAGGCTCTGCGTCCTCAACCCCTTCACGGGCACCCTCTTCCGTTTCCGAGTGCC
ACCGGTGCATCCCTTCGACAGGAGCGTGGTCGTCGCCGGCTCGTCGCCCATGGTGCTCTTCAGCTTCTACAACTTCCACC
ACCTAGCATGGGCCGACCAGAACTGTGTTTTCTTTCCGCCGCTGGTCAAGCCCACGCCGGCACTTCGCGGGTTCACCGCC
GTGGTGGCCTTCCAGGGCCGCGTATACGCTGCCCACTCCAGCGGCTCGGTTGCGCTAGTCGAGCTCTCCCGGCGGCACAA
CAAGCCTCAGATCACCGTCATCGTCCCCAGCAGTAACTGGCAAGCCACGCCCACTTTACTCGTGGACAACGCCGGCGAGC
TGCTGCTGCTGCGCATTCCGGTTTACTCCCGCATGGAGGTCTTCAGGGTGGACCTCGTGAGGAAAACGCTGGTGCCCGTC
AACAGCATCGGAAACCGTGCCCTCTTCCTCGGCCTCCGGTGCT-CCCTCTCTGTTGACGCCGACCGCCTCCCTGCCGTCG
ACGCCAATTTCATCTACTACGGCGAGGGTCTGATGTGTGAAGCGGGGGTTTGCGCGCATCGCCTCGGGGACGACCGAAGT
TTTATTGAGAGATGGGAAGATGAGAGGATTATCCCGCACACGGGAGACATGTGGAAACCTATCGACCCAAGAGCATCGCG
CCCCAAGAGCCTCGCACATGTCCTTGTGTCCTACTGCATGGGCAAGCGTTAG----------------------------
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----------------------
>chr5A_1_TraesCS5A01G350400
TATATTTTACTTCTATAGCCATGGCAAATTTTACTCTATTTTTGCCATGGCAAAATCTGGACTATTGCTC----------
-----------------------------------------------------------CATGGTAAAATTGC---TTTT
TTCACATG---------------------GCAAATTTTACTTTTTCTTTCCATGGCAAATTTTCCATGCCAAGTCTTGCA
TA--GAGCATGCCAACTTAATTGCATGGAGTACACATCCATGTATGAATACATTCATGTCAAATTAATTATGTATAGCAC
-TCTAGTTTGTGAGTCATGGCATTTTTATTTAATATATGAATACATTCATGGCGATTTTTGA--TTTTTTGAGTACTTAA
AAACAATGTTTTTGGCATGATGTTTTTTTCATGGCAAATTCTGACACTATACAGATTTTGCTATGTTGCAACATTGATGA
TTTTTACATCTTG-AACATAGAAATGTAGCAGACTACCTTTTG--TTTGTGTGTTACAGATTCTGGAGTTTTGTGTTTTT
TAACAATTAAGGGTATTTTTGTGAGCTTTTGCCGTAACAGGCCCATTTTTTGCTGCCCCGTGCATCTTGTTTTATATTTT
TTGGGCCCAATTCATATTCCTTTTTCTAGGCTTCGTGGGCTTTGCATTAGCAACAAGGTTTTCACTCGCGACAATACTCG
ATCGGTTCGGGCTGGGACATTTTCAGATCGAACAAAATCGTTCGATCGATCCCCCACTTCCTGCCGAACGATTCGTTCGG
GCTGGGACATCCCAACACCGAACGTTCGGCACATATCGACGTCCAAAAAGAAAGGAATTGCACGAGACACTGCTAGTGCT
GTCGTGCCTGGCCACTACGCGATCGTCATGCACCAAATGATGCAGAAGTGGTTGATTAATGGGACGCGTTAGTTAAGTGC
TTCACTCTCCAAAG------------CGGCGCAGAAGACACAGCGTCACATCGCAGTAACTGCTGGCTCCCCGAGCGCGC
CCCATCGTGTCCCCGCATCCATTTGTATTCTGCTCCTCCACACCACGAAAGCAGAC--------------TCATAGCATC
GGCGACCATGGCCATGGCGGCGGACTGGTCGTCCCTCCCATCCAACTTCGTCCGCGCCGTCGCCGACGTCTTCCTCGCCA
CCACCGACCTCGACTACTA-------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CATGACACTCCGGAGCGTGTGCCACGGCTGGCGAGCCGCGACCGCCGACCCGCACGGCACCGA
CCCCCGCTTTCACCCCCGCCGGTGGATCATGCTCGAGGAGACCCGGCCAGACGTCGACCAAGACTCCCGCCTCTTCCTCA
ACCTCGACACCGGGCGTTTCCTGCGGAAACGCCTCTCCGTGCTACGCAGCTACACATACCTCGCCACGGCCAGTGGCCTG
CTCGTCCTGGAGGAGCCTGATATGTGCAGGCTCTGCGTCCTCAACCCCTTCACGGGCACCCTCTTCCGTTTCCGAGTGCC
ACCGGTGCATCCCTTCGACAGGAGCGTGGTCGTCGCCGGCTCGTCGCCCATGGTGCTCTTCAGCTTCTACAACTTCCACC
ACCTAGCATGGGCCGACCAGAACTGTGTTTTCTTTCCGCCGCTGGTCAAGCCCACGCCGGCACTTCGCGGGTTCACCGCC
GTGGTGGCCTTCCAGGGCCGCGTATACGCTGCCCACTCCAGCGGCTCGGTTGCGCTAGTCGAGCTCTCCCGGCGGCACAA
CAAGCCTCAGATCACCGTCATCGTCCCCAGCAGTAACTGGCAAGCCACGCCCACTTTACTCGTGGACAACGCCGGCGAGC
TGCTGCTGCTGCGCATTCCGGTTTACTCCCGCATGGAGGTCTTCAGGGTGGACCTCGTGAGGAAAACGCTGGTGCCCGTC
AACAGCATCGGAAACCGTGCCCTCTTCCTCGGCCTCCGGTGCT-CCCTCTCTGTTGACGCCGACCGCCTCCCTGCCGTCG
ACGCCAATTTCATCTACTACGGCGAGGGTCTGATGTGTGAAGCGGGGGTTTGCGCGCATCGCCTCGGGGACGACCGAAGT
TTTATTGAGAGATGGGAAGATGAGAGGATTATCCCGCACACGGGAGACATGTGGAAACCTATCGACCCAAGAGCATCGCG
CCCCAAGAGCCTCGCACATGTCCTTGTGTCCTACTGCATGGGCAAGCGTTAGTTTTGTGTACGCAACACAAATGCTAGAC
AAGTGCTCCTTTGATGATTTTCAC----TATTATTTTGCTTAATGAATTTCTGTGATGTTCTCGGGAAAGATTTGTTTAC
TGAATATGGCTAATCCATTTCCCTTCGTCGAGTGGGGTTGAGATTTGAGGTGA-CCATGGTTGCTGTGAAATCGATCGCA
TCCATTTGGGCAAGTCAC--------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------GCCCAAACGTACAGTGGTGCTGTAGGTAGCCAATACCCTCTGATCTCAAGTATATAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACCCACATAGATCATGA
ACCAAAATTTTGATTCATGGACCGTTGGTATATTTGAGTTCCTTGTGGGACGAGATCTTTCAAACAAGACCGGCCGCAAC
TATATTTCAGTGAATTTGAAGCATGATAAAACTATAAAACTCTGATTCTTAGACTTGCTTCACGTCAAGCTAGTTGGATA
TCATGTTTCGTAGTGTATCGTGATGTTCTATATTTTGTTTAGCGTGCATGTTAATGTTTCATTGTGTCATCATGCTACCT
TGTTTTTTCCTTTTTTTTTTCTATGTGCACTAGAACATGGTAGTGTTTTTGTGTGCTTCAAACTATTCTGCGTCCATGAA
ACAAGTCCTTTTAAACAAGACCAATCATGAATATATTTTGACAAGATTTAAAATTAGGATTTTAAAATACGGTAAAACTT
TATGATACTATAGAAACTTTAT
>chr2B_4
TTTACTTCTC-----TAGCCATGGCAAATTTTACTCTATTTTTGCCATGGCAAATTTAAACTATTCTTCCATGGCAAAAA
TACTTTCATTCACATGGAAAATTTAACTTTCTTGCCATGGAAAATTTTACTCTTTTTTTCATGGCACAAATAC---TTTT
TTCACATGTCGAATTTACTTTTTGCCATGGCAAATTTTACTCTTTTTTTCCATGGAAAATTTTCCATGCCACACCATTTG
CCTAGAGAGTGGCAACTTAATTGCATGGAGTACACATCCATGTATGGATACATCCATATCAACT----------------
--CTAGTTTATGGGTCATGGCA-TTTGATTTAATATATGAATACATTCATGGCTATTTTTTTATTTTGTCAACTACTCG-
AAACAATCTTT--GGCATGGTAG-TTTGTCATGGCAAATGCTGACTCCATACATAA-TTGTTATGTTGCAATATTGATGA
TTTGC-CACCCCTCAACATAGAAATGTACCAGACTA---TTTT--GTTGTGTGATACAGATTCTGCAGTTTTGTGCTTTT
TTAAAG---GGGGTAT-TTCATGATCTTT---------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------TGTCATGGCATGCCCATTTTTTTG-------------------
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----------------------TCGTCCTGTGCATCTTGTTTT-ATATCTTTTTTGGCCCAAT-----------------
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-TCTTTTTTCTTTTTC-----------------------------------------------------TAGGCTTTGTG
GGCTTTTCATTAGCGGCATGGTTTCC------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------CTCGTAAAACAAATTAGCGA
TAAGGTTTTCTCGGTCGGTTCATGCTGGGATGGT---TTCAGATCGAATGAAATCGTTCGATTGATTCCCCATGTGTTGT
CG-----------------------------------------------------------------------------A
ACGATTCGTTTGGGCTGAGGCATCTCTAGACCGAACGTTCAACACATATCGACGTCCTAAAAG-----------------
----------------------
>chrUn_72
--------------------------------------------------------------------------------
------------------------------------------------------------ATGGCTAAAATAGTTTTTTA
TTCACATG---------------------GAAAATTTTACTTCTTTTTGCCATGGCAATTTTTCCATGCCATGTCATTTG
TATGGAGCATGGCAACTTAATTGCATGGAGTACACATCCATGTATAAATACATTCATGTCAACTTAATGCTGTATGGCAA
TTCTAATTTATGGGTCACGGCA-TTTTATTTAATATATGAATACAGTCATGACAATTTTTTGATTTTCTTGAGTACTCGT
AAACAATCTTT--GGCATGATGTTTTTGTCATGGCAAATGCTGACAGCATACAGAA-TTGCTATGTTGCAACATTGATGA
TTTTTGCATCCCACAACATAGAGATGTACCAGACTA---TTTTTGTTTGTGTATTATAGATTCTGGAGTTTTGTGTTTAA
AAAAAATTAGGGGTAC-TTTATGAGCTTT---------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------TACCATGACAGGCCCATGAT-----------------------
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------------------------GTCCTGTGCATCTTGTTTTTATATCTTATTTTGTCCAAT-----------------
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-TCGTTTTTCTTTTTC-----------------------------------------------------TTGGCTTTGTG
GGCTTTTCATTAGCGGCGTGGTTTTC------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------CCTC----------------
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----------------------
>chr5D_753
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-----------------------------------------------------GGAATTGCACGAGACACTGCTAGTGCT
ATCGTGCCTGGCCACTACGCGATCGTCATGCACCAATTGATGCAGAAGTGGTTGATTAATCGGACGCGTTAATTAAGTGC
TTCACTCTCAGAAGCGAGCGGCGACCCGGCTCAGAAGACACAGCGTCACATCGCAGTAACTGCTGCTTCCCCGAGCGCGC
CCCATCGTGTTCCCGCATCCATTTATATTCGGCTCCTCCACACCACGAGAACAGACGCCAAACCGCGAACTCATAGCACC
GGCGACCATGGCCATGGCGGCGGACTGGTCATCCCTCCCATCCAACTTCGTCCGCGCCGTCGCCGACGTCTTCCTCGCCA
CCACCGACCTTGACTACTATTCATCCGTTCCTAAATATAAGTCTTTGAAGAGATTTCACTATGGACTATATACGGAACAA
AATTAGTGAATCATAATCTAAAATGCATCTATATACATCCGTACGTGGTCCATAGTGAAATCTCTACAAAGACTTATATT
TAGAAACGGAGGGAGTACATGGCACTCCGGAGCGTGTGCCACAGCTGGAGAGCCGCCACCGCCGACCCGCACGACACCGA
CCCCCGCTTCCACCCCCGCCGGTGGATCATGCTGGAGGAGCCCCGGGGCAACGTCGACGACGACTCGCGACTCTTCCTCA
ACCTCGAAACCTTGCGTTTCCAGCGGAAACGCCTTTCCGTGCTACGCAGCTACACCTACCTTGCCACGGCCAGTGGCCTG
CTCGTCCTGCAGGAACCTGATATGTGCAGGCTCTGCGTCCTCAATCCCTTCACGGGCACCCTCTTCAGTTTCCGGGTGCC
ACCCGTGCATCCCTTCGACAGAAGCGTGGTGGTCGCCGGCTCGTCGCCCATGGTGCTCTTCAGCTTCTACAACTTCCACC
GCCTAGCATGGGCCGACCAGAACTGTGTTTTCTTTCCGCCGCTGGTCAAGCCCACGCAGGCACTTCGCGGGTTCACCGCC
GTGGTGGCCTTCCAGGGC-GCGTATACGCTGCCCACTCCAGCGGCTCGGTTGCGCTAGTCGAGCTCTCCCGGCGACACAA
CAAGCCTCAGATCACCGTCATCGTCCCCAGCAGTAACTGGCAAGCCACGCCCACTTTTCTCGTGGACAACGCCGGCGAGC
TGCTGCTGCTGCGCATTCCGGTTTACTCCCGCATGGAGGTCCTCAGGGTGGACCTCGTGAGGAAAACGCTGGTGCCAGTC
AACAGCATCGGAAACCGTGCCCTCTTCCTCGGCCTCCGGTGCT-CCCTCTCCGTTGACGCCGACCGCCTCCCTGCCGTCG
ACGCCAATTTCATCTACTACGGCGAGGGTCTGATGTGTGAAGTGGGGGTTTGCGCGCATCGCCTCGGGGACGACCGAAGT
TTTATTGAGAGATGGGAAGACGAGAGGATTATCCCGCACACGGGAGACATGTGGAAACCTATCGACCCAAGAGCATCGCG
CCCCAAGAGCCTCGCACATGTCCTCGTGTCCTACTGCATGGGCAATCGTTAGTTTTGTGTCCGCAACACAAATGCTAGAC
AAGTG------------TTTTTCACTATTATTAGTTTCCTTCATGAATTTCTGTAATGATCTCGTGTAAGATCTGTTTAC
CGGATATGGCTAATCCACTTCCCTTGATCGAGTGGGTTTGAGATTTGAGGTAA-CCATGGTTGCTGTGAAATCGATCCCA
TCCATTTGGG----------------------------------------------------------------------
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>chr5B_2118
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---TGCTGCTTTGATAATTTTTCACTATTATT--TTTCCTTCATGAATTTCTGTAATGTTCTCGGGAAAGATTTGTTTAC
TGAATATGGCTAATCCATTTCCCTTGATCGAGT-GGGTTGAGATTTGAGGTAACCCATGGTTGCTGTGAAATCGATCCCA
TTCATTTTTTTGCATGGTAATACGTGTCTCATTTATATCATAAGGATCATAGTACAAGCCACGTACATACCGACCTGACA
AAACTGAAAAGACAGTAGAACGCTAGCCTTTGCACACAGGAACACCAGCCAAAAAGTAAAATTACAAACAAGACTAAAGG
ATCCTCTGAGCTTGACACCAACGCCCGTCACCTGCCTCTGGCGCCACCATAGCAGCCACCAAAGGAGAACATGACGGATC
ACCTCCATATCCGAGCTCGACGCGGCTCCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTTGCCAATAAAGGC
GAAGCCATTGCCGTTGAACGAATTAGACCGGGGCAACACCCCGGATACGTCATCGAACTCCAGATATGGCACCCCCGCCC
AACTAAGATGTTGGAGGAGGAAACCATACCTGCCTGGCACGAACCACGAACCCAGATTCACCATCTTCCAGATGCTGTCG
ATGCAGACTACAATCTGCATCTGCTCCTGGAATACCTCCCAAGCTCCACGCCGGCGATGGAGCAAACGCCGTTGCAACAG
CGGAGCCCGAGGACACAGGACCACCACGAGGATGTCGCCGCCGCCGCACCATCCTTGCTTGAACAGTCTGGTTTCCAAAT
CCACCACAAAAGCGGATCGCCTCGTTGGAGAAGGATCTGAAGATTTATTAGTCGGCGCCGCCATCACCACTGCCGAAGCC
ATGACGATGAACAACCCAAAATCCTAAAAAACTAATGCCTAAAGCAATCCACACACGTGGATCCGGCGACCCCCCTCACC
ACCGACGACCGAGGTCGTCAGCGGAGGGGAGCCGCCGGAGGACGGCGGCGGAGGAAGACGCCCTAGCGGCAGGAGGCGAG
ATCGCCTTTCTTTTCTTCTCCTGGAAGAAAGAAAGCGCCCAAGCGTACTAGATAGTCGATCCCATCCATTTGGCTTTGTG
AGTTATTCAAACAAACTGTCGTAGCCCAAACGTACCAGTAGTACATAGTACTCCAAATT---------------------
--------------------------------------------------------------------------------
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--CAAATTGTTGATTTATTAATATGATGTTATGCTCCAAATTCAAGTATAAAGAGAAAGACTAATTTTTATTA-------
-----------------------------------------------------------------------------ATA
TCATGTTTCTTAGTGTACCGTAATGTTCTATATTTTGTTTAGAGTGCATGTTAATGTTTCATTGTGTCATCGTGCTACCT
TGTTTTTTCCTGTTTCCG----ATGTGCACTAGAACATGGTAGTGTTTTTGTGTGCTTCAAACCATTCTGCGTTCATGCA
ACGAGTCCTTTTAAACAAGACCAATTATGAATATATTTTGACAAGATTTAAAATTAGGATTTTAAAATACGGTAAAACTT
TATGACACTATAGAAACTTTAT
>SNPs
-S--S--SS-SSSSS---------------------------------------S-SSSSSSSS-SSSS-----------
----------------------------------------------------------------S----S-S--------
---------------------------------------------S-------------------------S---S-SSS
-----------S--------------------------------------------------S-----SS-----S---S
---------S--S---------S------------------------------S------SS-----S---------SSS
-------S---SS--------------S-----------S-------S-------SS-----------------------
-----S----SSS---------------S-------SSS---S-------------------------------------
---S-----S------S---S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
S-----------------------------------S-----------------------S----------S--------
---------SS-------------------S----------------------------------SS-------------
----------S-------------S-----S-----------------S-S---------------------------S-
------------------------------S-------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S--------------------S-----S-------S----------------S------
---------S-----------------------S------S-----SSSS--------S-S-----S--S----------
-------S---SS--------S------------S--------------------S-----S------------------
---------S----S-----------------------------S---------------------S-------S-----
---S-----------------S--------S-------------------------------------------------
S--------------------------------------------------------S----------------------
------------------S-------------------------------------------------------S-----
---------------------------------------------------------S----------------------
-----------------------------------------S----------------------------------S---
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------S-----------------------------------------------------------
------------------------S--------------------S--------------S-------------------
-------S-------S-----SSS---------S---S---S------------S-------------------------
-------------------------SS------------------------S-------------------------S--
----------SSSS-SSS--------------------------------------------------------------
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-----------------------------------SSSSSSSSSS---SSSS----SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----S-S------S--SS-SSSSSS--SSSSS-SSSSSSSSSSSSSS-SSSSSSSSSS-S--SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S---S--S-S-S--S----
---------S-------S---S--------------------S-------------------------------------
-----------S---SSSSSSS-----------------------------------------S---------S----S-
--S-----------------------------------------------------------------------------
-----S----------------
>forward_684
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------------------------TCTAGGCTTCGTGGGCTTTG------------------------------------
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----------------------
>reverse_2077
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----------------------------------------------------------------------------CGTC
AACAGCATCGGAAACC----------------------------------------------------------------
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----------------------
>forward_725
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------TCGCGACAATACTCG
ATCGG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>reverse_2572
--------------------------------------------------------------------------------
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-----------AAGTCACGCCCAAACGTACA-------------------------------------------------
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----------------------
