Multiple sequence alignment - TraesCS5A01G349800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G349800 chr5A 100.000 2369 0 0 1 2369 552551248 552548880 0.000000e+00 4375
1 TraesCS5A01G349800 chr5A 88.746 311 32 3 245 554 554681199 554681507 6.180000e-101 377
2 TraesCS5A01G349800 chr5A 88.710 310 32 3 245 553 11888488 11888181 2.220000e-100 375
3 TraesCS5A01G349800 chr5A 87.540 313 36 3 242 554 103574087 103574396 2.240000e-95 359
4 TraesCS5A01G349800 chr5D 96.347 876 31 1 1494 2369 437354942 437354068 0.000000e+00 1439
5 TraesCS5A01G349800 chr5D 88.131 1188 82 33 724 1884 437356140 437354985 0.000000e+00 1358
6 TraesCS5A01G349800 chr5D 92.932 665 25 12 744 1390 437460214 437459554 0.000000e+00 948
7 TraesCS5A01G349800 chr5D 84.507 213 29 4 901 1110 437362627 437362416 8.580000e-50 207
8 TraesCS5A01G349800 chr5D 88.356 146 12 2 1 146 437461259 437461119 1.130000e-38 171
9 TraesCS5A01G349800 chr5B 88.556 900 75 24 1425 2316 531552730 531551851 0.000000e+00 1066
10 TraesCS5A01G349800 chr5B 91.128 665 47 8 744 1401 531600861 531600202 0.000000e+00 891
11 TraesCS5A01G349800 chr5B 88.058 695 56 18 745 1422 531553522 531552838 0.000000e+00 798
12 TraesCS5A01G349800 chr2A 90.415 313 23 6 245 554 375987162 375987470 2.840000e-109 405
13 TraesCS5A01G349800 chr2A 89.355 310 32 1 245 554 612313622 612313314 2.860000e-104 388
14 TraesCS5A01G349800 chr6A 89.524 315 29 3 242 554 608862885 608863197 1.710000e-106 396
15 TraesCS5A01G349800 chr6A 80.266 527 66 17 1279 1799 87755278 87755772 1.730000e-96 363
16 TraesCS5A01G349800 chr4A 89.677 310 31 1 245 554 191376563 191376871 6.140000e-106 394
17 TraesCS5A01G349800 chr4D 88.535 314 33 3 243 554 221295046 221295358 6.180000e-101 377
18 TraesCS5A01G349800 chr1A 88.179 313 33 3 245 554 413849908 413850219 1.030000e-98 370
19 TraesCS5A01G349800 chr6B 79.468 526 69 17 1279 1799 144960437 144960928 1.050000e-88 337
20 TraesCS5A01G349800 chr6D 79.317 527 61 21 1279 1799 69941880 69942364 2.270000e-85 326
21 TraesCS5A01G349800 chrUn 89.103 156 15 1 1 154 150640939 150641094 2.400000e-45 193
22 TraesCS5A01G349800 chrUn 89.103 156 15 1 1 154 150737477 150737632 2.400000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G349800 chr5A 552548880 552551248 2368 True 4375.0 4375 100.000 1 2369 1 chr5A.!!$R2 2368
1 TraesCS5A01G349800 chr5D 437354068 437356140 2072 True 1398.5 1439 92.239 724 2369 2 chr5D.!!$R2 1645
2 TraesCS5A01G349800 chr5D 437459554 437461259 1705 True 559.5 948 90.644 1 1390 2 chr5D.!!$R3 1389
3 TraesCS5A01G349800 chr5B 531551851 531553522 1671 True 932.0 1066 88.307 745 2316 2 chr5B.!!$R2 1571
4 TraesCS5A01G349800 chr5B 531600202 531600861 659 True 891.0 891 91.128 744 1401 1 chr5B.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 502 0.105504 CCCAATCCCCTCAATTCCCC 60.106 60.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 2901 0.034574 TGCCACCTATGTTCGCCATT 60.035 50.0 0.0 0.0 34.86 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 8.836268 TGTAAACCAACAATATAGTCTTCGTT 57.164 30.769 0.00 0.00 0.00 3.85
77 78 8.592998 CCAACAATATAGTCTTCGTTCAACTAC 58.407 37.037 0.00 0.00 0.00 2.73
85 86 7.934855 AGTCTTCGTTCAACTACCTTATCTA 57.065 36.000 0.00 0.00 0.00 1.98
86 87 8.345724 AGTCTTCGTTCAACTACCTTATCTAA 57.654 34.615 0.00 0.00 0.00 2.10
87 88 8.800332 AGTCTTCGTTCAACTACCTTATCTAAA 58.200 33.333 0.00 0.00 0.00 1.85
88 89 9.415544 GTCTTCGTTCAACTACCTTATCTAAAA 57.584 33.333 0.00 0.00 0.00 1.52
146 147 9.561069 ACAATTAATTAAGCCTAACTGATCGAT 57.439 29.630 0.00 0.00 0.00 3.59
152 153 9.561069 AATTAAGCCTAACTGATCGATAACATT 57.439 29.630 0.00 0.00 0.00 2.71
153 154 8.958119 TTAAGCCTAACTGATCGATAACATTT 57.042 30.769 0.00 0.00 0.00 2.32
154 155 7.865706 AAGCCTAACTGATCGATAACATTTT 57.134 32.000 0.00 0.00 0.00 1.82
155 156 7.865706 AGCCTAACTGATCGATAACATTTTT 57.134 32.000 0.00 0.00 0.00 1.94
178 179 6.605471 TTTATCAGCTAAGTGAACTCAGGA 57.395 37.500 0.00 0.00 0.00 3.86
180 181 3.501349 TCAGCTAAGTGAACTCAGGACT 58.499 45.455 0.00 0.00 0.00 3.85
183 184 4.218635 CAGCTAAGTGAACTCAGGACTACA 59.781 45.833 0.00 0.00 0.00 2.74
184 185 4.218852 AGCTAAGTGAACTCAGGACTACAC 59.781 45.833 0.00 0.00 0.00 2.90
185 186 4.618693 GCTAAGTGAACTCAGGACTACACC 60.619 50.000 0.00 0.00 0.00 4.16
207 366 7.888021 ACACCTGTCCAAATTCACATTATTCTA 59.112 33.333 0.00 0.00 0.00 2.10
212 371 7.279981 TGTCCAAATTCACATTATTCTACCTCG 59.720 37.037 0.00 0.00 0.00 4.63
214 373 6.765989 CCAAATTCACATTATTCTACCTCGGA 59.234 38.462 0.00 0.00 0.00 4.55
219 378 4.523173 CACATTATTCTACCTCGGAGGCTA 59.477 45.833 23.84 13.63 39.63 3.93
220 379 5.010719 CACATTATTCTACCTCGGAGGCTAA 59.989 44.000 23.84 15.07 39.63 3.09
221 380 5.601313 ACATTATTCTACCTCGGAGGCTAAA 59.399 40.000 23.84 14.73 39.63 1.85
222 381 5.526506 TTATTCTACCTCGGAGGCTAAAC 57.473 43.478 23.84 0.00 39.63 2.01
223 382 1.386533 TCTACCTCGGAGGCTAAACG 58.613 55.000 23.84 6.27 39.63 3.60
224 383 1.065199 TCTACCTCGGAGGCTAAACGA 60.065 52.381 23.84 8.40 39.63 3.85
228 387 2.187073 TCGGAGGCTAAACGAGACC 58.813 57.895 4.58 0.00 30.67 3.85
229 388 0.323178 TCGGAGGCTAAACGAGACCT 60.323 55.000 4.58 0.00 35.23 3.85
230 389 0.531200 CGGAGGCTAAACGAGACCTT 59.469 55.000 0.00 0.00 33.39 3.50
231 390 1.067071 CGGAGGCTAAACGAGACCTTT 60.067 52.381 0.00 0.00 33.39 3.11
232 391 2.619147 GGAGGCTAAACGAGACCTTTC 58.381 52.381 0.00 0.00 33.39 2.62
233 392 2.260481 GAGGCTAAACGAGACCTTTCG 58.740 52.381 0.00 0.00 45.70 3.46
243 402 4.151258 CGAGACCTTTCGTGTAACACTA 57.849 45.455 0.00 0.00 35.74 2.74
244 403 4.539870 CGAGACCTTTCGTGTAACACTAA 58.460 43.478 0.00 0.00 35.74 2.24
245 404 4.615961 CGAGACCTTTCGTGTAACACTAAG 59.384 45.833 0.00 0.00 35.74 2.18
246 405 4.879598 AGACCTTTCGTGTAACACTAAGG 58.120 43.478 13.80 13.80 43.22 2.69
249 408 3.556423 CCTTTCGTGTAACACTAAGGCCT 60.556 47.826 0.00 0.00 37.18 5.19
251 410 1.200716 TCGTGTAACACTAAGGCCTCG 59.799 52.381 5.23 2.42 35.74 4.63
252 411 1.068055 CGTGTAACACTAAGGCCTCGT 60.068 52.381 5.23 3.22 35.74 4.18
256 415 2.922740 AACACTAAGGCCTCGTTTGA 57.077 45.000 5.23 0.00 0.00 2.69
257 416 2.165319 ACACTAAGGCCTCGTTTGAC 57.835 50.000 5.23 0.00 0.00 3.18
258 417 1.414919 ACACTAAGGCCTCGTTTGACA 59.585 47.619 5.23 0.00 0.00 3.58
259 418 2.158871 ACACTAAGGCCTCGTTTGACAA 60.159 45.455 5.23 0.00 0.00 3.18
261 420 2.076863 CTAAGGCCTCGTTTGACAAGG 58.923 52.381 5.23 0.00 0.00 3.61
262 421 0.537371 AAGGCCTCGTTTGACAAGGG 60.537 55.000 5.23 0.00 0.00 3.95
264 423 0.955919 GGCCTCGTTTGACAAGGGAG 60.956 60.000 0.00 9.46 0.00 4.30
265 424 0.955919 GCCTCGTTTGACAAGGGAGG 60.956 60.000 22.80 22.80 0.00 4.30
266 425 0.396811 CCTCGTTTGACAAGGGAGGT 59.603 55.000 20.46 0.00 0.00 3.85
267 426 1.202770 CCTCGTTTGACAAGGGAGGTT 60.203 52.381 20.46 0.00 0.00 3.50
269 428 2.949644 CTCGTTTGACAAGGGAGGTTTT 59.050 45.455 8.82 0.00 0.00 2.43
270 429 2.685897 TCGTTTGACAAGGGAGGTTTTG 59.314 45.455 0.00 0.00 0.00 2.44
271 430 2.798145 CGTTTGACAAGGGAGGTTTTGC 60.798 50.000 0.00 0.00 0.00 3.68
272 431 2.151502 TTGACAAGGGAGGTTTTGCA 57.848 45.000 0.00 0.00 0.00 4.08
273 432 1.691196 TGACAAGGGAGGTTTTGCAG 58.309 50.000 0.00 0.00 0.00 4.41
274 433 0.315251 GACAAGGGAGGTTTTGCAGC 59.685 55.000 0.00 0.00 0.00 5.25
275 434 1.115326 ACAAGGGAGGTTTTGCAGCC 61.115 55.000 0.00 0.00 0.00 4.85
276 435 1.533994 AAGGGAGGTTTTGCAGCCC 60.534 57.895 0.00 0.00 39.12 5.19
277 436 2.997315 GGGAGGTTTTGCAGCCCC 60.997 66.667 0.00 0.00 32.50 5.80
279 438 3.373565 GAGGTTTTGCAGCCCCGG 61.374 66.667 0.00 0.00 0.00 5.73
280 439 3.860930 GAGGTTTTGCAGCCCCGGA 62.861 63.158 0.73 0.00 0.00 5.14
281 440 3.373565 GGTTTTGCAGCCCCGGAG 61.374 66.667 0.73 0.00 0.00 4.63
283 442 2.597217 TTTTGCAGCCCCGGAGTG 60.597 61.111 0.73 0.00 0.00 3.51
289 448 4.787280 AGCCCCGGAGTGGAGGAG 62.787 72.222 0.73 0.00 42.00 3.69
292 451 4.400251 CCCGGAGTGGAGGAGGGT 62.400 72.222 0.73 0.00 42.00 4.34
293 452 2.760385 CCGGAGTGGAGGAGGGTC 60.760 72.222 0.00 0.00 42.00 4.46
294 453 2.360980 CGGAGTGGAGGAGGGTCT 59.639 66.667 0.00 0.00 0.00 3.85
295 454 2.055042 CGGAGTGGAGGAGGGTCTG 61.055 68.421 0.00 0.00 0.00 3.51
296 455 1.388531 GGAGTGGAGGAGGGTCTGA 59.611 63.158 0.00 0.00 0.00 3.27
297 456 0.686112 GGAGTGGAGGAGGGTCTGAG 60.686 65.000 0.00 0.00 0.00 3.35
298 457 0.333312 GAGTGGAGGAGGGTCTGAGA 59.667 60.000 0.00 0.00 0.00 3.27
299 458 0.334676 AGTGGAGGAGGGTCTGAGAG 59.665 60.000 0.00 0.00 0.00 3.20
300 459 0.686112 GTGGAGGAGGGTCTGAGAGG 60.686 65.000 0.00 0.00 0.00 3.69
301 460 0.851332 TGGAGGAGGGTCTGAGAGGA 60.851 60.000 0.00 0.00 0.00 3.71
302 461 0.560688 GGAGGAGGGTCTGAGAGGAT 59.439 60.000 0.00 0.00 0.00 3.24
303 462 1.062505 GGAGGAGGGTCTGAGAGGATT 60.063 57.143 0.00 0.00 0.00 3.01
304 463 2.628290 GGAGGAGGGTCTGAGAGGATTT 60.628 54.545 0.00 0.00 0.00 2.17
305 464 2.433970 GAGGAGGGTCTGAGAGGATTTG 59.566 54.545 0.00 0.00 0.00 2.32
306 465 1.488393 GGAGGGTCTGAGAGGATTTGG 59.512 57.143 0.00 0.00 0.00 3.28
307 466 2.192263 GAGGGTCTGAGAGGATTTGGT 58.808 52.381 0.00 0.00 0.00 3.67
308 467 2.573915 GAGGGTCTGAGAGGATTTGGTT 59.426 50.000 0.00 0.00 0.00 3.67
309 468 3.775316 GAGGGTCTGAGAGGATTTGGTTA 59.225 47.826 0.00 0.00 0.00 2.85
310 469 4.175962 AGGGTCTGAGAGGATTTGGTTAA 58.824 43.478 0.00 0.00 0.00 2.01
311 470 4.790790 AGGGTCTGAGAGGATTTGGTTAAT 59.209 41.667 0.00 0.00 0.00 1.40
312 471 5.104318 AGGGTCTGAGAGGATTTGGTTAATC 60.104 44.000 0.00 0.00 41.64 1.75
324 483 7.089770 GATTTGGTTAATCCCTCTCTTTCAC 57.910 40.000 0.00 0.00 37.29 3.18
325 484 4.569719 TGGTTAATCCCTCTCTTTCACC 57.430 45.455 0.00 0.00 34.77 4.02
326 485 3.265995 TGGTTAATCCCTCTCTTTCACCC 59.734 47.826 0.00 0.00 34.77 4.61
327 486 3.265995 GGTTAATCCCTCTCTTTCACCCA 59.734 47.826 0.00 0.00 0.00 4.51
328 487 4.263771 GGTTAATCCCTCTCTTTCACCCAA 60.264 45.833 0.00 0.00 0.00 4.12
329 488 5.510430 GTTAATCCCTCTCTTTCACCCAAT 58.490 41.667 0.00 0.00 0.00 3.16
330 489 3.941704 ATCCCTCTCTTTCACCCAATC 57.058 47.619 0.00 0.00 0.00 2.67
331 490 1.916181 TCCCTCTCTTTCACCCAATCC 59.084 52.381 0.00 0.00 0.00 3.01
332 491 1.064389 CCCTCTCTTTCACCCAATCCC 60.064 57.143 0.00 0.00 0.00 3.85
333 492 1.064389 CCTCTCTTTCACCCAATCCCC 60.064 57.143 0.00 0.00 0.00 4.81
334 493 1.918957 CTCTCTTTCACCCAATCCCCT 59.081 52.381 0.00 0.00 0.00 4.79
335 494 1.916181 TCTCTTTCACCCAATCCCCTC 59.084 52.381 0.00 0.00 0.00 4.30
336 495 1.635487 CTCTTTCACCCAATCCCCTCA 59.365 52.381 0.00 0.00 0.00 3.86
337 496 2.041620 CTCTTTCACCCAATCCCCTCAA 59.958 50.000 0.00 0.00 0.00 3.02
338 497 2.654385 TCTTTCACCCAATCCCCTCAAT 59.346 45.455 0.00 0.00 0.00 2.57
339 498 3.077391 TCTTTCACCCAATCCCCTCAATT 59.923 43.478 0.00 0.00 0.00 2.32
340 499 2.826674 TCACCCAATCCCCTCAATTC 57.173 50.000 0.00 0.00 0.00 2.17
341 500 1.287739 TCACCCAATCCCCTCAATTCC 59.712 52.381 0.00 0.00 0.00 3.01
342 501 0.636647 ACCCAATCCCCTCAATTCCC 59.363 55.000 0.00 0.00 0.00 3.97
343 502 0.105504 CCCAATCCCCTCAATTCCCC 60.106 60.000 0.00 0.00 0.00 4.81
344 503 0.636101 CCAATCCCCTCAATTCCCCA 59.364 55.000 0.00 0.00 0.00 4.96
345 504 1.689258 CCAATCCCCTCAATTCCCCAC 60.689 57.143 0.00 0.00 0.00 4.61
346 505 1.288932 CAATCCCCTCAATTCCCCACT 59.711 52.381 0.00 0.00 0.00 4.00
347 506 2.513738 CAATCCCCTCAATTCCCCACTA 59.486 50.000 0.00 0.00 0.00 2.74
348 507 2.369668 TCCCCTCAATTCCCCACTAA 57.630 50.000 0.00 0.00 0.00 2.24
349 508 2.871796 TCCCCTCAATTCCCCACTAAT 58.128 47.619 0.00 0.00 0.00 1.73
350 509 3.206464 TCCCCTCAATTCCCCACTAATT 58.794 45.455 0.00 0.00 0.00 1.40
351 510 3.600617 TCCCCTCAATTCCCCACTAATTT 59.399 43.478 0.00 0.00 0.00 1.82
352 511 3.960755 CCCCTCAATTCCCCACTAATTTC 59.039 47.826 0.00 0.00 0.00 2.17
353 512 4.326132 CCCCTCAATTCCCCACTAATTTCT 60.326 45.833 0.00 0.00 0.00 2.52
354 513 4.889995 CCCTCAATTCCCCACTAATTTCTC 59.110 45.833 0.00 0.00 0.00 2.87
355 514 4.889995 CCTCAATTCCCCACTAATTTCTCC 59.110 45.833 0.00 0.00 0.00 3.71
356 515 4.867086 TCAATTCCCCACTAATTTCTCCC 58.133 43.478 0.00 0.00 0.00 4.30
357 516 4.544152 TCAATTCCCCACTAATTTCTCCCT 59.456 41.667 0.00 0.00 0.00 4.20
358 517 4.797912 ATTCCCCACTAATTTCTCCCTC 57.202 45.455 0.00 0.00 0.00 4.30
359 518 3.508952 TCCCCACTAATTTCTCCCTCT 57.491 47.619 0.00 0.00 0.00 3.69
360 519 3.385115 TCCCCACTAATTTCTCCCTCTC 58.615 50.000 0.00 0.00 0.00 3.20
361 520 3.115390 CCCCACTAATTTCTCCCTCTCA 58.885 50.000 0.00 0.00 0.00 3.27
362 521 3.718956 CCCCACTAATTTCTCCCTCTCAT 59.281 47.826 0.00 0.00 0.00 2.90
363 522 4.907875 CCCCACTAATTTCTCCCTCTCATA 59.092 45.833 0.00 0.00 0.00 2.15
364 523 5.369699 CCCCACTAATTTCTCCCTCTCATAA 59.630 44.000 0.00 0.00 0.00 1.90
365 524 6.126478 CCCCACTAATTTCTCCCTCTCATAAA 60.126 42.308 0.00 0.00 0.00 1.40
366 525 7.421853 CCCCACTAATTTCTCCCTCTCATAAAT 60.422 40.741 0.00 0.00 0.00 1.40
367 526 7.663493 CCCACTAATTTCTCCCTCTCATAAATC 59.337 40.741 0.00 0.00 0.00 2.17
368 527 7.663493 CCACTAATTTCTCCCTCTCATAAATCC 59.337 40.741 0.00 0.00 0.00 3.01
369 528 8.213679 CACTAATTTCTCCCTCTCATAAATCCA 58.786 37.037 0.00 0.00 0.00 3.41
370 529 8.953665 ACTAATTTCTCCCTCTCATAAATCCAT 58.046 33.333 0.00 0.00 0.00 3.41
371 530 9.447157 CTAATTTCTCCCTCTCATAAATCCATC 57.553 37.037 0.00 0.00 0.00 3.51
377 536 8.600668 TCTCCCTCTCATAAATCCATCTATTTG 58.399 37.037 0.00 0.00 31.63 2.32
378 537 7.693132 TCCCTCTCATAAATCCATCTATTTGG 58.307 38.462 0.00 0.00 38.18 3.28
388 547 7.898014 AATCCATCTATTTGGTTAAACCTCC 57.102 36.000 0.00 0.00 39.58 4.30
389 548 6.652205 TCCATCTATTTGGTTAAACCTCCT 57.348 37.500 0.00 0.00 39.58 3.69
391 550 7.571025 TCCATCTATTTGGTTAAACCTCCTAC 58.429 38.462 0.00 0.00 39.58 3.18
394 553 8.674607 CATCTATTTGGTTAAACCTCCTACAAC 58.325 37.037 0.00 0.00 39.58 3.32
395 554 7.747690 TCTATTTGGTTAAACCTCCTACAACA 58.252 34.615 0.00 0.00 39.58 3.33
396 555 6.894339 ATTTGGTTAAACCTCCTACAACAG 57.106 37.500 0.00 0.00 39.58 3.16
402 561 3.963428 AACCTCCTACAACAGTAGCAG 57.037 47.619 0.00 0.00 35.08 4.24
403 562 1.550976 ACCTCCTACAACAGTAGCAGC 59.449 52.381 0.00 0.00 35.08 5.25
404 563 1.550524 CCTCCTACAACAGTAGCAGCA 59.449 52.381 0.00 0.00 35.08 4.41
407 566 4.500545 CCTCCTACAACAGTAGCAGCATAG 60.501 50.000 0.00 0.00 35.08 2.23
410 569 3.057969 ACAACAGTAGCAGCATAGCAA 57.942 42.857 0.00 0.00 36.85 3.91
412 571 3.189287 ACAACAGTAGCAGCATAGCAAAC 59.811 43.478 0.00 0.00 36.85 2.93
413 572 2.002586 ACAGTAGCAGCATAGCAAACG 58.997 47.619 0.00 0.00 36.85 3.60
416 672 1.327764 GTAGCAGCATAGCAAACGTCC 59.672 52.381 0.00 0.00 36.85 4.79
419 675 1.442769 CAGCATAGCAAACGTCCAGT 58.557 50.000 0.00 0.00 0.00 4.00
420 676 1.806542 CAGCATAGCAAACGTCCAGTT 59.193 47.619 0.00 0.00 46.76 3.16
424 680 1.053424 TAGCAAACGTCCAGTTCCCT 58.947 50.000 0.00 0.00 43.37 4.20
427 683 1.944430 GCAAACGTCCAGTTCCCTAGG 60.944 57.143 0.06 0.06 43.37 3.02
429 685 0.974383 AACGTCCAGTTCCCTAGGTG 59.026 55.000 8.29 0.00 39.16 4.00
431 687 0.531200 CGTCCAGTTCCCTAGGTGTC 59.469 60.000 8.29 0.00 0.00 3.67
434 690 2.028020 GTCCAGTTCCCTAGGTGTCTTG 60.028 54.545 8.29 0.00 0.00 3.02
435 691 1.279271 CCAGTTCCCTAGGTGTCTTGG 59.721 57.143 8.29 5.20 35.98 3.61
445 701 4.227527 CCTAGGTGTCTTGGGGTATTTTCT 59.772 45.833 0.00 0.00 33.21 2.52
448 704 4.600111 AGGTGTCTTGGGGTATTTTCTGTA 59.400 41.667 0.00 0.00 0.00 2.74
449 705 4.698780 GGTGTCTTGGGGTATTTTCTGTAC 59.301 45.833 0.00 0.00 0.00 2.90
451 707 4.351407 TGTCTTGGGGTATTTTCTGTACCA 59.649 41.667 4.87 0.00 42.74 3.25
452 708 4.698780 GTCTTGGGGTATTTTCTGTACCAC 59.301 45.833 4.87 1.46 44.29 4.16
456 712 3.951680 GGGGTATTTTCTGTACCACATGG 59.048 47.826 0.00 0.00 43.64 3.66
459 715 5.891551 GGGTATTTTCTGTACCACATGGATT 59.108 40.000 4.53 0.00 42.74 3.01
461 717 7.558444 GGGTATTTTCTGTACCACATGGATTAA 59.442 37.037 4.53 0.00 42.74 1.40
462 718 8.621286 GGTATTTTCTGTACCACATGGATTAAG 58.379 37.037 4.53 0.00 41.03 1.85
463 719 9.391006 GTATTTTCTGTACCACATGGATTAAGA 57.609 33.333 4.53 0.00 38.94 2.10
464 720 8.877864 ATTTTCTGTACCACATGGATTAAGAA 57.122 30.769 4.53 5.62 38.94 2.52
465 721 7.921786 TTTCTGTACCACATGGATTAAGAAG 57.078 36.000 4.53 0.00 38.94 2.85
466 722 5.989477 TCTGTACCACATGGATTAAGAAGG 58.011 41.667 4.53 0.00 38.94 3.46
467 723 5.724370 TCTGTACCACATGGATTAAGAAGGA 59.276 40.000 4.53 0.00 38.94 3.36
470 726 7.054124 TGTACCACATGGATTAAGAAGGATTC 58.946 38.462 4.53 0.00 41.65 2.52
471 727 5.126067 ACCACATGGATTAAGAAGGATTCG 58.874 41.667 4.53 0.00 44.39 3.34
473 729 5.008019 CCACATGGATTAAGAAGGATTCGTG 59.992 44.000 0.00 0.00 44.32 4.35
482 738 1.681793 GAAGGATTCGTGGAGATCGGA 59.318 52.381 0.00 0.00 34.17 4.55
483 739 1.776662 AGGATTCGTGGAGATCGGAA 58.223 50.000 0.00 0.00 0.00 4.30
484 740 2.108168 AGGATTCGTGGAGATCGGAAA 58.892 47.619 0.00 0.00 0.00 3.13
485 741 2.500098 AGGATTCGTGGAGATCGGAAAA 59.500 45.455 0.00 0.00 0.00 2.29
488 744 3.887621 TTCGTGGAGATCGGAAAAGAT 57.112 42.857 0.00 0.00 0.00 2.40
490 746 3.521560 TCGTGGAGATCGGAAAAGATTG 58.478 45.455 0.00 0.00 0.00 2.67
491 747 2.609459 CGTGGAGATCGGAAAAGATTGG 59.391 50.000 0.00 0.00 0.00 3.16
492 748 2.356069 GTGGAGATCGGAAAAGATTGGC 59.644 50.000 0.00 0.00 0.00 4.52
493 749 1.950216 GGAGATCGGAAAAGATTGGCC 59.050 52.381 0.00 0.00 0.00 5.36
494 750 2.422093 GGAGATCGGAAAAGATTGGCCT 60.422 50.000 3.32 0.00 0.00 5.19
495 751 2.615912 GAGATCGGAAAAGATTGGCCTG 59.384 50.000 3.32 0.00 0.00 4.85
496 752 1.066152 GATCGGAAAAGATTGGCCTGC 59.934 52.381 3.32 0.00 0.00 4.85
498 754 0.453390 CGGAAAAGATTGGCCTGCTC 59.547 55.000 3.32 0.00 0.00 4.26
501 757 2.498885 GGAAAAGATTGGCCTGCTCAAT 59.501 45.455 3.32 0.00 37.52 2.57
502 758 3.429960 GGAAAAGATTGGCCTGCTCAATC 60.430 47.826 17.95 17.95 46.39 2.67
503 759 1.772836 AAGATTGGCCTGCTCAATCC 58.227 50.000 20.17 9.84 46.91 3.01
504 760 0.106318 AGATTGGCCTGCTCAATCCC 60.106 55.000 20.17 6.74 46.91 3.85
506 762 1.143684 GATTGGCCTGCTCAATCCCTA 59.856 52.381 3.32 0.00 42.59 3.53
507 763 0.255890 TTGGCCTGCTCAATCCCTAC 59.744 55.000 3.32 0.00 0.00 3.18
509 765 1.522569 GCCTGCTCAATCCCTACGT 59.477 57.895 0.00 0.00 0.00 3.57
510 766 0.750850 GCCTGCTCAATCCCTACGTA 59.249 55.000 0.00 0.00 0.00 3.57
511 767 1.344763 GCCTGCTCAATCCCTACGTAT 59.655 52.381 0.00 0.00 0.00 3.06
512 768 2.610727 GCCTGCTCAATCCCTACGTATC 60.611 54.545 0.00 0.00 0.00 2.24
515 789 4.442893 CCTGCTCAATCCCTACGTATCAAA 60.443 45.833 0.00 0.00 0.00 2.69
518 792 4.452455 GCTCAATCCCTACGTATCAAATGG 59.548 45.833 0.00 0.00 0.00 3.16
522 796 2.104111 TCCCTACGTATCAAATGGGCTG 59.896 50.000 9.86 0.00 34.89 4.85
524 798 3.131396 CCTACGTATCAAATGGGCTGAC 58.869 50.000 0.00 0.00 0.00 3.51
526 800 3.066291 ACGTATCAAATGGGCTGACAA 57.934 42.857 0.00 0.00 0.00 3.18
527 801 3.009723 ACGTATCAAATGGGCTGACAAG 58.990 45.455 0.00 0.00 0.00 3.16
528 802 2.355756 CGTATCAAATGGGCTGACAAGG 59.644 50.000 0.00 0.00 0.00 3.61
529 803 2.905415 ATCAAATGGGCTGACAAGGA 57.095 45.000 0.00 0.00 0.00 3.36
533 807 3.511146 TCAAATGGGCTGACAAGGATTTC 59.489 43.478 0.00 0.00 0.00 2.17
534 808 2.149973 ATGGGCTGACAAGGATTTCC 57.850 50.000 0.00 0.00 0.00 3.13
537 811 1.373570 GGCTGACAAGGATTTCCGAG 58.626 55.000 0.00 0.00 42.08 4.63
538 812 1.373570 GCTGACAAGGATTTCCGAGG 58.626 55.000 0.00 0.00 42.08 4.63
539 813 1.066143 GCTGACAAGGATTTCCGAGGA 60.066 52.381 0.00 0.00 42.08 3.71
545 819 4.662278 ACAAGGATTTCCGAGGATTTTGA 58.338 39.130 0.00 0.00 42.08 2.69
548 822 4.017126 AGGATTTCCGAGGATTTTGAACC 58.983 43.478 0.00 0.00 42.08 3.62
550 824 4.096532 GGATTTCCGAGGATTTTGAACCTC 59.903 45.833 0.00 0.00 46.31 3.85
557 831 4.550422 GAGGATTTTGAACCTCTGCAAAC 58.450 43.478 0.00 0.00 46.28 2.93
559 833 3.321968 GGATTTTGAACCTCTGCAAACCT 59.678 43.478 0.00 0.00 34.09 3.50
561 835 1.981256 TTGAACCTCTGCAAACCTCC 58.019 50.000 0.00 0.00 0.00 4.30
562 836 1.140312 TGAACCTCTGCAAACCTCCT 58.860 50.000 0.00 0.00 0.00 3.69
563 837 1.072331 TGAACCTCTGCAAACCTCCTC 59.928 52.381 0.00 0.00 0.00 3.71
564 838 1.349357 GAACCTCTGCAAACCTCCTCT 59.651 52.381 0.00 0.00 0.00 3.69
565 839 2.327325 ACCTCTGCAAACCTCCTCTA 57.673 50.000 0.00 0.00 0.00 2.43
567 841 1.134551 CCTCTGCAAACCTCCTCTAGC 60.135 57.143 0.00 0.00 0.00 3.42
568 842 1.552337 CTCTGCAAACCTCCTCTAGCA 59.448 52.381 0.00 0.00 0.00 3.49
569 843 1.977854 TCTGCAAACCTCCTCTAGCAA 59.022 47.619 0.00 0.00 0.00 3.91
570 844 2.371841 TCTGCAAACCTCCTCTAGCAAA 59.628 45.455 0.00 0.00 0.00 3.68
572 846 2.158682 TGCAAACCTCCTCTAGCAAACA 60.159 45.455 0.00 0.00 0.00 2.83
574 848 3.057946 GCAAACCTCCTCTAGCAAACAAG 60.058 47.826 0.00 0.00 0.00 3.16
589 929 1.826385 ACAAGGCCTAATGCACTGTC 58.174 50.000 5.16 0.00 43.89 3.51
594 934 1.281899 GCCTAATGCACTGTCGAGAC 58.718 55.000 0.00 0.00 40.77 3.36
616 956 4.081807 ACGACTATTGTACTTTCTCACCCC 60.082 45.833 0.00 0.00 0.00 4.95
625 965 4.086706 ACTTTCTCACCCCTTGTTAGTG 57.913 45.455 0.00 0.00 0.00 2.74
627 967 4.351111 ACTTTCTCACCCCTTGTTAGTGAT 59.649 41.667 0.00 0.00 39.64 3.06
634 974 4.881850 CACCCCTTGTTAGTGATATGGAAC 59.118 45.833 0.00 0.00 33.21 3.62
661 1020 1.961394 GGTTCACACCCCCTTTTCTTC 59.039 52.381 0.00 0.00 37.03 2.87
663 1022 2.885266 GTTCACACCCCCTTTTCTTCTC 59.115 50.000 0.00 0.00 0.00 2.87
675 1034 5.048434 CCCTTTTCTTCTCACCTTGACAATC 60.048 44.000 0.00 0.00 0.00 2.67
680 1039 6.280855 TCTTCTCACCTTGACAATCGAATA 57.719 37.500 0.00 0.00 0.00 1.75
684 1043 9.098355 CTTCTCACCTTGACAATCGAATAATAA 57.902 33.333 0.00 0.00 0.00 1.40
685 1044 8.648557 TCTCACCTTGACAATCGAATAATAAG 57.351 34.615 0.00 0.00 0.00 1.73
686 1045 7.224753 TCTCACCTTGACAATCGAATAATAAGC 59.775 37.037 0.00 0.00 0.00 3.09
687 1046 6.821160 TCACCTTGACAATCGAATAATAAGCA 59.179 34.615 0.00 0.00 0.00 3.91
688 1047 7.335673 TCACCTTGACAATCGAATAATAAGCAA 59.664 33.333 0.00 0.00 0.00 3.91
699 1058 2.851263 AATAAGCAACCGGACACTCA 57.149 45.000 9.46 0.00 0.00 3.41
700 1059 2.094762 ATAAGCAACCGGACACTCAC 57.905 50.000 9.46 0.00 0.00 3.51
703 1070 2.251642 GCAACCGGACACTCACACC 61.252 63.158 9.46 0.00 0.00 4.16
718 1085 2.048127 ACCGCCTCGCTCAGAAAC 60.048 61.111 0.00 0.00 0.00 2.78
813 1226 0.394488 TCCTCCTTCAGCGTCGATCT 60.394 55.000 0.00 0.00 0.00 2.75
876 1291 4.754667 GTCCTTCCGCGTCCCACC 62.755 72.222 4.92 0.00 0.00 4.61
956 1371 4.351938 CGTTCGACCGCCTCCACA 62.352 66.667 0.00 0.00 0.00 4.17
1299 1729 1.077212 CAAGGTCTGGGCCATCCTG 60.077 63.158 24.55 16.73 36.20 3.86
1422 1853 3.417101 TCCGTGCCTGTCATTTGTTTAT 58.583 40.909 0.00 0.00 0.00 1.40
1441 1977 0.248825 TGTGTGTGCGTTGATTTGCC 60.249 50.000 0.00 0.00 0.00 4.52
1484 2020 7.468922 AAAAAGTGCAGAAATTTTAGTGCTC 57.531 32.000 17.11 14.50 36.84 4.26
1594 2130 5.063944 CAGTGAACATCTACGGAGGAAAATG 59.936 44.000 0.00 0.00 0.00 2.32
1680 2668 3.005155 AGGAAACTCTGCAATGTTTCTGC 59.995 43.478 27.97 19.11 46.43 4.26
1734 2722 7.224362 TGCAGTAACAAATGAACAAAAAGATGG 59.776 33.333 0.00 0.00 0.00 3.51
1795 2783 5.476599 CCCCATATTTTGTTGTCACTTCAGA 59.523 40.000 0.00 0.00 0.00 3.27
1910 2898 1.664873 CATCTACCTCCGACTCGACA 58.335 55.000 0.00 0.00 0.00 4.35
1913 2901 3.548745 TCTACCTCCGACTCGACAATA 57.451 47.619 0.00 0.00 0.00 1.90
1959 2947 3.638627 TGACAGACAGACATCAGTGTTCT 59.361 43.478 0.00 0.00 39.09 3.01
2002 2990 2.480419 CCTTTGCGCCATACTACTATGC 59.520 50.000 4.18 0.00 0.00 3.14
2252 3254 5.948992 AGGTCACAGCTGAAAATTAACTC 57.051 39.130 23.35 0.00 0.00 3.01
2297 3299 7.446625 GCCATTTCTGAACAGATGTTATCCTAT 59.553 37.037 5.34 0.00 38.56 2.57
2342 3346 5.530519 TTTCACTAAAATGCAGTAGCGAG 57.469 39.130 0.00 0.00 46.23 5.03
2356 3360 5.276442 GCAGTAGCGAGATTTACACTAAAGC 60.276 44.000 0.00 0.00 34.46 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.447157 TTTCAATGACCAGAAAATTTCACTTTT 57.553 25.926 8.55 0.00 31.35 2.27
21 22 8.805175 ACAATGTAAATGATTTCAATGACCAGA 58.195 29.630 0.00 0.00 0.00 3.86
51 52 7.596749 AGTTGAACGAAGACTATATTGTTGG 57.403 36.000 0.00 0.00 0.00 3.77
55 56 8.928270 AAGGTAGTTGAACGAAGACTATATTG 57.072 34.615 0.00 0.00 0.00 1.90
91 92 9.613428 TCCAGACACACCTTCAAATATATAAAG 57.387 33.333 0.00 0.00 0.00 1.85
93 94 9.613428 CTTCCAGACACACCTTCAAATATATAA 57.387 33.333 0.00 0.00 0.00 0.98
96 97 7.103641 GTCTTCCAGACACACCTTCAAATATA 58.896 38.462 0.00 0.00 44.45 0.86
97 98 5.940470 GTCTTCCAGACACACCTTCAAATAT 59.060 40.000 0.00 0.00 44.45 1.28
98 99 5.305585 GTCTTCCAGACACACCTTCAAATA 58.694 41.667 0.00 0.00 44.45 1.40
99 100 4.137543 GTCTTCCAGACACACCTTCAAAT 58.862 43.478 0.00 0.00 44.45 2.32
100 101 3.541632 GTCTTCCAGACACACCTTCAAA 58.458 45.455 0.00 0.00 44.45 2.69
115 116 9.174166 TCAGTTAGGCTTAATTAATTGTCTTCC 57.826 33.333 11.05 5.13 0.00 3.46
153 154 7.387948 GTCCTGAGTTCACTTAGCTGATAAAAA 59.612 37.037 0.00 0.00 0.00 1.94
154 155 6.874134 GTCCTGAGTTCACTTAGCTGATAAAA 59.126 38.462 0.00 0.00 0.00 1.52
155 156 6.211584 AGTCCTGAGTTCACTTAGCTGATAAA 59.788 38.462 0.00 0.00 0.00 1.40
156 157 5.717178 AGTCCTGAGTTCACTTAGCTGATAA 59.283 40.000 0.00 0.00 0.00 1.75
157 158 5.265191 AGTCCTGAGTTCACTTAGCTGATA 58.735 41.667 0.00 0.00 0.00 2.15
158 159 4.093011 AGTCCTGAGTTCACTTAGCTGAT 58.907 43.478 0.00 0.00 0.00 2.90
159 160 3.501349 AGTCCTGAGTTCACTTAGCTGA 58.499 45.455 0.00 0.00 0.00 4.26
163 164 4.767928 AGGTGTAGTCCTGAGTTCACTTAG 59.232 45.833 10.35 0.00 36.35 2.18
178 179 4.431416 TGTGAATTTGGACAGGTGTAGT 57.569 40.909 0.00 0.00 0.00 2.73
180 181 7.888021 AGAATAATGTGAATTTGGACAGGTGTA 59.112 33.333 0.00 0.00 0.00 2.90
183 184 7.339466 GGTAGAATAATGTGAATTTGGACAGGT 59.661 37.037 0.00 0.00 0.00 4.00
184 185 7.557719 AGGTAGAATAATGTGAATTTGGACAGG 59.442 37.037 0.00 0.00 0.00 4.00
185 186 8.511604 AGGTAGAATAATGTGAATTTGGACAG 57.488 34.615 0.00 0.00 0.00 3.51
198 357 5.723672 TTAGCCTCCGAGGTAGAATAATG 57.276 43.478 16.09 0.00 37.80 1.90
207 366 0.323178 TCTCGTTTAGCCTCCGAGGT 60.323 55.000 16.09 5.64 46.03 3.85
212 371 2.619147 GAAAGGTCTCGTTTAGCCTCC 58.381 52.381 0.00 0.00 32.53 4.30
214 373 2.365408 CGAAAGGTCTCGTTTAGCCT 57.635 50.000 0.00 0.00 34.40 4.58
222 381 3.009301 AGTGTTACACGAAAGGTCTCG 57.991 47.619 10.00 0.00 44.50 4.04
223 382 4.922103 CCTTAGTGTTACACGAAAGGTCTC 59.078 45.833 28.51 0.71 42.20 3.36
224 383 4.798593 GCCTTAGTGTTACACGAAAGGTCT 60.799 45.833 32.53 12.39 45.41 3.85
225 384 3.431233 GCCTTAGTGTTACACGAAAGGTC 59.569 47.826 32.53 25.78 45.41 3.85
226 385 3.396560 GCCTTAGTGTTACACGAAAGGT 58.603 45.455 32.53 13.51 45.41 3.50
227 386 2.740447 GGCCTTAGTGTTACACGAAAGG 59.260 50.000 30.60 30.60 45.89 3.11
228 387 3.660865 AGGCCTTAGTGTTACACGAAAG 58.339 45.455 19.53 19.53 39.64 2.62
229 388 3.656559 GAGGCCTTAGTGTTACACGAAA 58.343 45.455 6.77 8.81 39.64 3.46
230 389 2.352030 CGAGGCCTTAGTGTTACACGAA 60.352 50.000 6.77 10.19 39.64 3.85
231 390 1.200716 CGAGGCCTTAGTGTTACACGA 59.799 52.381 6.77 1.49 39.64 4.35
232 391 1.068055 ACGAGGCCTTAGTGTTACACG 60.068 52.381 6.77 3.82 39.64 4.49
233 392 2.738013 ACGAGGCCTTAGTGTTACAC 57.262 50.000 6.77 7.50 34.10 2.90
234 393 3.069872 TCAAACGAGGCCTTAGTGTTACA 59.930 43.478 6.77 0.00 0.00 2.41
235 394 3.431233 GTCAAACGAGGCCTTAGTGTTAC 59.569 47.826 6.77 3.84 0.00 2.50
236 395 3.069872 TGTCAAACGAGGCCTTAGTGTTA 59.930 43.478 6.77 0.00 0.00 2.41
237 396 2.158871 TGTCAAACGAGGCCTTAGTGTT 60.159 45.455 6.77 7.28 0.00 3.32
238 397 1.414919 TGTCAAACGAGGCCTTAGTGT 59.585 47.619 6.77 2.35 0.00 3.55
240 399 2.550208 CCTTGTCAAACGAGGCCTTAGT 60.550 50.000 6.77 8.03 42.49 2.24
241 400 2.076863 CCTTGTCAAACGAGGCCTTAG 58.923 52.381 6.77 7.25 42.49 2.18
243 402 0.537371 CCCTTGTCAAACGAGGCCTT 60.537 55.000 6.77 0.00 46.42 4.35
244 403 1.073199 CCCTTGTCAAACGAGGCCT 59.927 57.895 3.86 3.86 46.42 5.19
245 404 0.955919 CTCCCTTGTCAAACGAGGCC 60.956 60.000 7.73 0.00 46.42 5.19
246 405 0.955919 CCTCCCTTGTCAAACGAGGC 60.956 60.000 12.46 0.00 46.42 4.70
249 408 2.685897 CAAAACCTCCCTTGTCAAACGA 59.314 45.455 0.00 0.00 0.00 3.85
251 410 2.167487 TGCAAAACCTCCCTTGTCAAAC 59.833 45.455 0.00 0.00 0.00 2.93
252 411 2.430332 CTGCAAAACCTCCCTTGTCAAA 59.570 45.455 0.00 0.00 0.00 2.69
256 415 1.115326 GGCTGCAAAACCTCCCTTGT 61.115 55.000 0.50 0.00 0.00 3.16
257 416 1.667722 GGCTGCAAAACCTCCCTTG 59.332 57.895 0.50 0.00 0.00 3.61
258 417 1.533994 GGGCTGCAAAACCTCCCTT 60.534 57.895 0.50 0.00 34.19 3.95
259 418 2.118294 GGGCTGCAAAACCTCCCT 59.882 61.111 0.50 0.00 34.19 4.20
261 420 3.373565 CGGGGCTGCAAAACCTCC 61.374 66.667 0.50 0.00 0.00 4.30
262 421 3.373565 CCGGGGCTGCAAAACCTC 61.374 66.667 0.50 0.00 0.00 3.85
264 423 3.373565 CTCCGGGGCTGCAAAACC 61.374 66.667 0.00 0.00 0.00 3.27
265 424 2.597510 ACTCCGGGGCTGCAAAAC 60.598 61.111 0.00 0.00 0.00 2.43
266 425 2.597217 CACTCCGGGGCTGCAAAA 60.597 61.111 0.00 0.00 0.00 2.44
267 426 4.659172 CCACTCCGGGGCTGCAAA 62.659 66.667 0.00 0.00 0.00 3.68
272 431 4.787280 CTCCTCCACTCCGGGGCT 62.787 72.222 0.00 0.00 31.39 5.19
275 434 4.400251 ACCCTCCTCCACTCCGGG 62.400 72.222 0.00 0.00 40.79 5.73
276 435 2.760385 GACCCTCCTCCACTCCGG 60.760 72.222 0.00 0.00 0.00 5.14
277 436 2.055042 CAGACCCTCCTCCACTCCG 61.055 68.421 0.00 0.00 0.00 4.63
279 438 0.333312 TCTCAGACCCTCCTCCACTC 59.667 60.000 0.00 0.00 0.00 3.51
280 439 0.334676 CTCTCAGACCCTCCTCCACT 59.665 60.000 0.00 0.00 0.00 4.00
281 440 0.686112 CCTCTCAGACCCTCCTCCAC 60.686 65.000 0.00 0.00 0.00 4.02
283 442 0.560688 ATCCTCTCAGACCCTCCTCC 59.439 60.000 0.00 0.00 0.00 4.30
286 445 1.488393 CCAAATCCTCTCAGACCCTCC 59.512 57.143 0.00 0.00 0.00 4.30
287 446 2.192263 ACCAAATCCTCTCAGACCCTC 58.808 52.381 0.00 0.00 0.00 4.30
288 447 2.350863 ACCAAATCCTCTCAGACCCT 57.649 50.000 0.00 0.00 0.00 4.34
289 448 4.569719 TTAACCAAATCCTCTCAGACCC 57.430 45.455 0.00 0.00 0.00 4.46
300 459 6.095580 GGTGAAAGAGAGGGATTAACCAAATC 59.904 42.308 0.00 0.00 42.90 2.17
301 460 5.952347 GGTGAAAGAGAGGGATTAACCAAAT 59.048 40.000 0.00 0.00 41.20 2.32
302 461 5.321927 GGTGAAAGAGAGGGATTAACCAAA 58.678 41.667 0.00 0.00 41.20 3.28
303 462 4.263771 GGGTGAAAGAGAGGGATTAACCAA 60.264 45.833 0.00 0.00 41.20 3.67
304 463 3.265995 GGGTGAAAGAGAGGGATTAACCA 59.734 47.826 0.00 0.00 41.20 3.67
305 464 3.265995 TGGGTGAAAGAGAGGGATTAACC 59.734 47.826 0.00 0.00 38.08 2.85
306 465 4.569719 TGGGTGAAAGAGAGGGATTAAC 57.430 45.455 0.00 0.00 0.00 2.01
307 466 5.340027 GGATTGGGTGAAAGAGAGGGATTAA 60.340 44.000 0.00 0.00 0.00 1.40
308 467 4.166144 GGATTGGGTGAAAGAGAGGGATTA 59.834 45.833 0.00 0.00 0.00 1.75
309 468 3.053320 GGATTGGGTGAAAGAGAGGGATT 60.053 47.826 0.00 0.00 0.00 3.01
310 469 2.511637 GGATTGGGTGAAAGAGAGGGAT 59.488 50.000 0.00 0.00 0.00 3.85
311 470 1.916181 GGATTGGGTGAAAGAGAGGGA 59.084 52.381 0.00 0.00 0.00 4.20
312 471 1.064389 GGGATTGGGTGAAAGAGAGGG 60.064 57.143 0.00 0.00 0.00 4.30
313 472 1.064389 GGGGATTGGGTGAAAGAGAGG 60.064 57.143 0.00 0.00 0.00 3.69
314 473 1.918957 AGGGGATTGGGTGAAAGAGAG 59.081 52.381 0.00 0.00 0.00 3.20
315 474 1.916181 GAGGGGATTGGGTGAAAGAGA 59.084 52.381 0.00 0.00 0.00 3.10
316 475 1.635487 TGAGGGGATTGGGTGAAAGAG 59.365 52.381 0.00 0.00 0.00 2.85
317 476 1.753903 TGAGGGGATTGGGTGAAAGA 58.246 50.000 0.00 0.00 0.00 2.52
318 477 2.603075 TTGAGGGGATTGGGTGAAAG 57.397 50.000 0.00 0.00 0.00 2.62
319 478 3.440127 GAATTGAGGGGATTGGGTGAAA 58.560 45.455 0.00 0.00 0.00 2.69
320 479 2.292192 GGAATTGAGGGGATTGGGTGAA 60.292 50.000 0.00 0.00 0.00 3.18
321 480 1.287739 GGAATTGAGGGGATTGGGTGA 59.712 52.381 0.00 0.00 0.00 4.02
322 481 1.689258 GGGAATTGAGGGGATTGGGTG 60.689 57.143 0.00 0.00 0.00 4.61
323 482 0.636647 GGGAATTGAGGGGATTGGGT 59.363 55.000 0.00 0.00 0.00 4.51
324 483 0.105504 GGGGAATTGAGGGGATTGGG 60.106 60.000 0.00 0.00 0.00 4.12
325 484 0.636101 TGGGGAATTGAGGGGATTGG 59.364 55.000 0.00 0.00 0.00 3.16
326 485 1.288932 AGTGGGGAATTGAGGGGATTG 59.711 52.381 0.00 0.00 0.00 2.67
327 486 1.698874 AGTGGGGAATTGAGGGGATT 58.301 50.000 0.00 0.00 0.00 3.01
328 487 2.605825 TAGTGGGGAATTGAGGGGAT 57.394 50.000 0.00 0.00 0.00 3.85
329 488 2.369668 TTAGTGGGGAATTGAGGGGA 57.630 50.000 0.00 0.00 0.00 4.81
330 489 3.688049 AATTAGTGGGGAATTGAGGGG 57.312 47.619 0.00 0.00 0.00 4.79
331 490 4.871822 AGAAATTAGTGGGGAATTGAGGG 58.128 43.478 0.00 0.00 0.00 4.30
332 491 4.889995 GGAGAAATTAGTGGGGAATTGAGG 59.110 45.833 0.00 0.00 0.00 3.86
333 492 4.889995 GGGAGAAATTAGTGGGGAATTGAG 59.110 45.833 0.00 0.00 0.00 3.02
334 493 4.544152 AGGGAGAAATTAGTGGGGAATTGA 59.456 41.667 0.00 0.00 0.00 2.57
335 494 4.871822 AGGGAGAAATTAGTGGGGAATTG 58.128 43.478 0.00 0.00 0.00 2.32
336 495 4.796265 AGAGGGAGAAATTAGTGGGGAATT 59.204 41.667 0.00 0.00 0.00 2.17
337 496 4.384465 AGAGGGAGAAATTAGTGGGGAAT 58.616 43.478 0.00 0.00 0.00 3.01
338 497 3.780850 GAGAGGGAGAAATTAGTGGGGAA 59.219 47.826 0.00 0.00 0.00 3.97
339 498 3.246350 TGAGAGGGAGAAATTAGTGGGGA 60.246 47.826 0.00 0.00 0.00 4.81
340 499 3.115390 TGAGAGGGAGAAATTAGTGGGG 58.885 50.000 0.00 0.00 0.00 4.96
341 500 6.500589 TTATGAGAGGGAGAAATTAGTGGG 57.499 41.667 0.00 0.00 0.00 4.61
342 501 7.663493 GGATTTATGAGAGGGAGAAATTAGTGG 59.337 40.741 0.00 0.00 0.00 4.00
343 502 8.213679 TGGATTTATGAGAGGGAGAAATTAGTG 58.786 37.037 0.00 0.00 0.00 2.74
344 503 8.337118 TGGATTTATGAGAGGGAGAAATTAGT 57.663 34.615 0.00 0.00 0.00 2.24
345 504 9.447157 GATGGATTTATGAGAGGGAGAAATTAG 57.553 37.037 0.00 0.00 0.00 1.73
346 505 9.175577 AGATGGATTTATGAGAGGGAGAAATTA 57.824 33.333 0.00 0.00 0.00 1.40
347 506 8.054931 AGATGGATTTATGAGAGGGAGAAATT 57.945 34.615 0.00 0.00 0.00 1.82
348 507 7.645132 AGATGGATTTATGAGAGGGAGAAAT 57.355 36.000 0.00 0.00 0.00 2.17
349 508 8.748179 ATAGATGGATTTATGAGAGGGAGAAA 57.252 34.615 0.00 0.00 0.00 2.52
350 509 8.748179 AATAGATGGATTTATGAGAGGGAGAA 57.252 34.615 0.00 0.00 0.00 2.87
351 510 8.600668 CAAATAGATGGATTTATGAGAGGGAGA 58.399 37.037 0.00 0.00 0.00 3.71
352 511 7.828223 CCAAATAGATGGATTTATGAGAGGGAG 59.172 40.741 0.00 0.00 43.54 4.30
353 512 7.295672 ACCAAATAGATGGATTTATGAGAGGGA 59.704 37.037 0.00 0.00 43.54 4.20
354 513 7.465116 ACCAAATAGATGGATTTATGAGAGGG 58.535 38.462 0.00 0.00 43.54 4.30
355 514 8.930846 AACCAAATAGATGGATTTATGAGAGG 57.069 34.615 0.00 0.00 43.54 3.69
362 521 9.416284 GGAGGTTTAACCAAATAGATGGATTTA 57.584 33.333 17.10 0.00 43.54 1.40
363 522 8.122481 AGGAGGTTTAACCAAATAGATGGATTT 58.878 33.333 17.10 0.00 43.54 2.17
364 523 7.652554 AGGAGGTTTAACCAAATAGATGGATT 58.347 34.615 17.10 0.00 43.54 3.01
365 524 7.226059 AGGAGGTTTAACCAAATAGATGGAT 57.774 36.000 17.10 0.00 43.54 3.41
366 525 6.652205 AGGAGGTTTAACCAAATAGATGGA 57.348 37.500 17.10 0.00 43.54 3.41
367 526 7.343357 TGTAGGAGGTTTAACCAAATAGATGG 58.657 38.462 17.10 0.00 41.95 3.51
368 527 8.674607 GTTGTAGGAGGTTTAACCAAATAGATG 58.325 37.037 17.10 0.00 41.95 2.90
369 528 8.387813 TGTTGTAGGAGGTTTAACCAAATAGAT 58.612 33.333 17.10 0.00 41.95 1.98
370 529 7.747690 TGTTGTAGGAGGTTTAACCAAATAGA 58.252 34.615 17.10 1.55 41.95 1.98
371 530 7.664318 ACTGTTGTAGGAGGTTTAACCAAATAG 59.336 37.037 17.10 9.84 41.95 1.73
377 536 4.934001 GCTACTGTTGTAGGAGGTTTAACC 59.066 45.833 5.91 5.91 44.64 2.85
378 537 5.544650 TGCTACTGTTGTAGGAGGTTTAAC 58.455 41.667 5.52 0.00 44.64 2.01
387 546 3.126831 GCTATGCTGCTACTGTTGTAGG 58.873 50.000 9.03 0.00 44.64 3.18
388 547 3.785486 TGCTATGCTGCTACTGTTGTAG 58.215 45.455 0.00 3.27 46.59 2.74
389 548 3.885724 TGCTATGCTGCTACTGTTGTA 57.114 42.857 0.00 0.00 0.00 2.41
391 550 3.725895 CGTTTGCTATGCTGCTACTGTTG 60.726 47.826 0.00 0.00 0.00 3.33
394 553 2.002586 ACGTTTGCTATGCTGCTACTG 58.997 47.619 0.00 0.00 0.00 2.74
395 554 2.271800 GACGTTTGCTATGCTGCTACT 58.728 47.619 0.00 0.00 0.00 2.57
396 555 1.327764 GGACGTTTGCTATGCTGCTAC 59.672 52.381 0.00 0.00 0.00 3.58
402 561 1.130561 GGAACTGGACGTTTGCTATGC 59.869 52.381 0.00 0.00 35.56 3.14
403 562 1.737793 GGGAACTGGACGTTTGCTATG 59.262 52.381 0.00 0.00 35.56 2.23
404 563 1.628846 AGGGAACTGGACGTTTGCTAT 59.371 47.619 0.00 0.00 41.13 2.97
407 566 1.439679 CTAGGGAACTGGACGTTTGC 58.560 55.000 0.00 0.00 42.49 3.68
410 569 0.974383 CACCTAGGGAACTGGACGTT 59.026 55.000 14.81 0.00 42.49 3.99
412 571 0.531200 GACACCTAGGGAACTGGACG 59.469 60.000 14.81 0.00 42.49 4.79
413 572 1.939980 AGACACCTAGGGAACTGGAC 58.060 55.000 14.81 1.60 42.49 4.02
416 672 1.279271 CCCAAGACACCTAGGGAACTG 59.721 57.143 14.81 4.51 44.30 3.16
419 675 0.195096 ACCCCAAGACACCTAGGGAA 59.805 55.000 14.81 0.00 44.30 3.97
420 676 1.095130 TACCCCAAGACACCTAGGGA 58.905 55.000 14.81 0.00 44.30 4.20
424 680 4.600111 ACAGAAAATACCCCAAGACACCTA 59.400 41.667 0.00 0.00 0.00 3.08
427 683 4.698780 GGTACAGAAAATACCCCAAGACAC 59.301 45.833 0.00 0.00 36.80 3.67
429 685 4.698780 GTGGTACAGAAAATACCCCAAGAC 59.301 45.833 0.00 0.00 41.80 3.01
431 687 4.658063 TGTGGTACAGAAAATACCCCAAG 58.342 43.478 0.00 0.00 41.80 3.61
434 690 3.951680 CCATGTGGTACAGAAAATACCCC 59.048 47.826 0.00 0.00 41.80 4.95
435 691 4.850680 TCCATGTGGTACAGAAAATACCC 58.149 43.478 0.00 0.00 41.80 3.69
437 693 9.391006 TCTTAATCCATGTGGTACAGAAAATAC 57.609 33.333 0.00 0.00 41.80 1.89
438 694 9.967451 TTCTTAATCCATGTGGTACAGAAAATA 57.033 29.630 0.00 0.00 41.80 1.40
439 695 8.877864 TTCTTAATCCATGTGGTACAGAAAAT 57.122 30.769 0.00 0.00 41.80 1.82
441 697 6.884295 CCTTCTTAATCCATGTGGTACAGAAA 59.116 38.462 0.00 0.00 41.80 2.52
445 701 6.575244 ATCCTTCTTAATCCATGTGGTACA 57.425 37.500 0.00 0.00 36.34 2.90
448 704 5.126067 CGAATCCTTCTTAATCCATGTGGT 58.874 41.667 0.00 0.00 36.34 4.16
449 705 5.008019 CACGAATCCTTCTTAATCCATGTGG 59.992 44.000 0.00 0.00 0.00 4.17
451 707 5.104527 TCCACGAATCCTTCTTAATCCATGT 60.105 40.000 0.00 0.00 0.00 3.21
452 708 5.368145 TCCACGAATCCTTCTTAATCCATG 58.632 41.667 0.00 0.00 0.00 3.66
455 711 5.277857 TCTCCACGAATCCTTCTTAATCC 57.722 43.478 0.00 0.00 0.00 3.01
456 712 5.631512 CGATCTCCACGAATCCTTCTTAATC 59.368 44.000 0.00 0.00 0.00 1.75
459 715 3.318275 CCGATCTCCACGAATCCTTCTTA 59.682 47.826 0.00 0.00 0.00 2.10
461 717 1.683917 CCGATCTCCACGAATCCTTCT 59.316 52.381 0.00 0.00 0.00 2.85
462 718 1.681793 TCCGATCTCCACGAATCCTTC 59.318 52.381 0.00 0.00 0.00 3.46
463 719 1.776662 TCCGATCTCCACGAATCCTT 58.223 50.000 0.00 0.00 0.00 3.36
464 720 1.776662 TTCCGATCTCCACGAATCCT 58.223 50.000 0.00 0.00 0.00 3.24
465 721 2.596904 TTTCCGATCTCCACGAATCC 57.403 50.000 0.00 0.00 0.00 3.01
466 722 3.782046 TCTTTTCCGATCTCCACGAATC 58.218 45.455 0.00 0.00 0.00 2.52
467 723 3.887621 TCTTTTCCGATCTCCACGAAT 57.112 42.857 0.00 0.00 0.00 3.34
470 726 2.609459 CCAATCTTTTCCGATCTCCACG 59.391 50.000 0.00 0.00 0.00 4.94
471 727 2.356069 GCCAATCTTTTCCGATCTCCAC 59.644 50.000 0.00 0.00 0.00 4.02
473 729 1.950216 GGCCAATCTTTTCCGATCTCC 59.050 52.381 0.00 0.00 0.00 3.71
477 733 1.106285 GCAGGCCAATCTTTTCCGAT 58.894 50.000 5.01 0.00 0.00 4.18
479 735 0.453390 GAGCAGGCCAATCTTTTCCG 59.547 55.000 5.01 0.00 0.00 4.30
480 736 1.549203 TGAGCAGGCCAATCTTTTCC 58.451 50.000 5.01 0.00 0.00 3.13
482 738 2.498885 GGATTGAGCAGGCCAATCTTTT 59.501 45.455 22.71 0.00 45.49 2.27
483 739 2.105766 GGATTGAGCAGGCCAATCTTT 58.894 47.619 22.71 0.00 45.49 2.52
484 740 1.687368 GGGATTGAGCAGGCCAATCTT 60.687 52.381 22.71 0.00 45.49 2.40
485 741 0.106318 GGGATTGAGCAGGCCAATCT 60.106 55.000 22.71 0.00 45.49 2.40
488 744 0.255890 GTAGGGATTGAGCAGGCCAA 59.744 55.000 5.01 0.00 0.00 4.52
490 746 1.227674 CGTAGGGATTGAGCAGGCC 60.228 63.158 0.00 0.00 0.00 5.19
491 747 0.750850 TACGTAGGGATTGAGCAGGC 59.249 55.000 0.00 0.00 0.00 4.85
492 748 2.628178 TGATACGTAGGGATTGAGCAGG 59.372 50.000 0.08 0.00 0.00 4.85
493 749 4.322080 TTGATACGTAGGGATTGAGCAG 57.678 45.455 0.08 0.00 0.00 4.24
494 750 4.746535 TTTGATACGTAGGGATTGAGCA 57.253 40.909 0.08 0.00 0.00 4.26
495 751 4.452455 CCATTTGATACGTAGGGATTGAGC 59.548 45.833 0.08 0.00 0.00 4.26
496 752 4.997395 CCCATTTGATACGTAGGGATTGAG 59.003 45.833 9.22 0.00 38.60 3.02
498 754 3.502211 GCCCATTTGATACGTAGGGATTG 59.498 47.826 17.18 5.35 38.60 2.67
501 757 2.104111 CAGCCCATTTGATACGTAGGGA 59.896 50.000 17.18 0.00 38.60 4.20
502 758 2.104111 TCAGCCCATTTGATACGTAGGG 59.896 50.000 10.28 10.28 39.33 3.53
503 759 3.131396 GTCAGCCCATTTGATACGTAGG 58.869 50.000 0.08 0.00 0.00 3.18
504 760 3.792401 TGTCAGCCCATTTGATACGTAG 58.208 45.455 0.08 0.00 0.00 3.51
506 762 2.779755 TGTCAGCCCATTTGATACGT 57.220 45.000 0.00 0.00 0.00 3.57
507 763 2.355756 CCTTGTCAGCCCATTTGATACG 59.644 50.000 0.00 0.00 0.00 3.06
509 765 4.524802 ATCCTTGTCAGCCCATTTGATA 57.475 40.909 0.00 0.00 0.00 2.15
510 766 2.905415 TCCTTGTCAGCCCATTTGAT 57.095 45.000 0.00 0.00 0.00 2.57
511 767 2.905415 ATCCTTGTCAGCCCATTTGA 57.095 45.000 0.00 0.00 0.00 2.69
512 768 3.368739 GGAAATCCTTGTCAGCCCATTTG 60.369 47.826 0.00 0.00 0.00 2.32
515 789 1.683011 CGGAAATCCTTGTCAGCCCAT 60.683 52.381 0.00 0.00 0.00 4.00
518 792 1.373570 CTCGGAAATCCTTGTCAGCC 58.626 55.000 0.00 0.00 0.00 4.85
522 796 4.700213 TCAAAATCCTCGGAAATCCTTGTC 59.300 41.667 0.00 0.00 0.00 3.18
524 798 5.402398 GTTCAAAATCCTCGGAAATCCTTG 58.598 41.667 0.00 0.00 0.00 3.61
526 800 4.017126 GGTTCAAAATCCTCGGAAATCCT 58.983 43.478 0.00 0.00 0.00 3.24
527 801 4.017126 AGGTTCAAAATCCTCGGAAATCC 58.983 43.478 0.00 0.00 0.00 3.01
528 802 5.236655 GAGGTTCAAAATCCTCGGAAATC 57.763 43.478 0.00 0.00 40.36 2.17
537 811 3.321968 AGGTTTGCAGAGGTTCAAAATCC 59.678 43.478 0.00 0.00 34.44 3.01
538 812 4.550422 GAGGTTTGCAGAGGTTCAAAATC 58.450 43.478 0.00 0.00 34.44 2.17
539 813 3.321968 GGAGGTTTGCAGAGGTTCAAAAT 59.678 43.478 0.00 0.00 34.44 1.82
545 819 1.439543 AGAGGAGGTTTGCAGAGGTT 58.560 50.000 0.00 0.00 0.00 3.50
548 822 1.552337 TGCTAGAGGAGGTTTGCAGAG 59.448 52.381 0.00 0.00 0.00 3.35
550 824 2.479566 TTGCTAGAGGAGGTTTGCAG 57.520 50.000 0.00 0.00 0.00 4.41
552 826 2.504367 TGTTTGCTAGAGGAGGTTTGC 58.496 47.619 0.00 0.00 0.00 3.68
553 827 3.503748 CCTTGTTTGCTAGAGGAGGTTTG 59.496 47.826 0.00 0.00 0.00 2.93
557 831 1.680249 GGCCTTGTTTGCTAGAGGAGG 60.680 57.143 0.00 0.00 0.00 4.30
559 833 1.362224 AGGCCTTGTTTGCTAGAGGA 58.638 50.000 0.00 0.00 0.00 3.71
561 835 3.065925 GCATTAGGCCTTGTTTGCTAGAG 59.934 47.826 12.58 0.00 36.11 2.43
562 836 3.016736 GCATTAGGCCTTGTTTGCTAGA 58.983 45.455 12.58 0.00 36.11 2.43
563 837 2.754552 TGCATTAGGCCTTGTTTGCTAG 59.245 45.455 12.58 0.00 43.89 3.42
564 838 2.491693 GTGCATTAGGCCTTGTTTGCTA 59.508 45.455 12.58 4.06 43.89 3.49
565 839 1.273327 GTGCATTAGGCCTTGTTTGCT 59.727 47.619 12.58 0.00 43.89 3.91
567 841 2.297033 ACAGTGCATTAGGCCTTGTTTG 59.703 45.455 12.58 4.98 43.89 2.93
568 842 2.558359 GACAGTGCATTAGGCCTTGTTT 59.442 45.455 12.58 0.00 43.89 2.83
569 843 2.162681 GACAGTGCATTAGGCCTTGTT 58.837 47.619 12.58 0.00 43.89 2.83
570 844 1.826385 GACAGTGCATTAGGCCTTGT 58.174 50.000 12.58 7.25 43.89 3.16
572 846 0.613260 TCGACAGTGCATTAGGCCTT 59.387 50.000 12.58 0.00 43.89 4.35
574 848 0.175760 TCTCGACAGTGCATTAGGCC 59.824 55.000 0.00 0.00 43.89 5.19
589 929 5.733572 GTGAGAAAGTACAATAGTCGTCTCG 59.266 44.000 0.00 0.00 0.00 4.04
594 934 4.159879 AGGGGTGAGAAAGTACAATAGTCG 59.840 45.833 0.00 0.00 0.00 4.18
597 937 5.805728 ACAAGGGGTGAGAAAGTACAATAG 58.194 41.667 0.00 0.00 0.00 1.73
605 945 4.351874 TCACTAACAAGGGGTGAGAAAG 57.648 45.455 0.00 0.00 35.44 2.62
616 956 4.570772 CACCCGTTCCATATCACTAACAAG 59.429 45.833 0.00 0.00 0.00 3.16
625 965 2.285977 GAACCACACCCGTTCCATATC 58.714 52.381 0.00 0.00 34.75 1.63
627 967 1.057471 TGAACCACACCCGTTCCATA 58.943 50.000 0.00 0.00 39.10 2.74
653 1012 5.466728 TCGATTGTCAAGGTGAGAAGAAAAG 59.533 40.000 0.00 0.00 33.01 2.27
656 1015 4.600692 TCGATTGTCAAGGTGAGAAGAA 57.399 40.909 0.00 0.00 33.01 2.52
661 1020 7.011389 TGCTTATTATTCGATTGTCAAGGTGAG 59.989 37.037 0.00 0.00 0.00 3.51
663 1022 7.015226 TGCTTATTATTCGATTGTCAAGGTG 57.985 36.000 0.00 0.00 0.00 4.00
675 1034 3.869246 AGTGTCCGGTTGCTTATTATTCG 59.131 43.478 0.00 0.00 0.00 3.34
680 1039 2.224426 TGTGAGTGTCCGGTTGCTTATT 60.224 45.455 0.00 0.00 0.00 1.40
684 1043 1.227556 GTGTGAGTGTCCGGTTGCT 60.228 57.895 0.00 0.00 0.00 3.91
685 1044 2.251642 GGTGTGAGTGTCCGGTTGC 61.252 63.158 0.00 0.00 0.00 4.17
686 1045 1.954146 CGGTGTGAGTGTCCGGTTG 60.954 63.158 0.00 0.00 40.49 3.77
687 1046 2.420043 CGGTGTGAGTGTCCGGTT 59.580 61.111 0.00 0.00 40.49 4.44
688 1047 4.295119 GCGGTGTGAGTGTCCGGT 62.295 66.667 0.00 0.00 43.77 5.28
699 1058 2.867855 TTTCTGAGCGAGGCGGTGT 61.868 57.895 0.00 0.00 37.83 4.16
700 1059 2.048222 TTTCTGAGCGAGGCGGTG 60.048 61.111 0.00 0.00 37.83 4.94
703 1070 2.734673 GCAGTTTCTGAGCGAGGCG 61.735 63.158 0.66 0.00 32.44 5.52
784 1197 0.633921 TGAAGGAGGAGGAGGAGGAG 59.366 60.000 0.00 0.00 0.00 3.69
785 1198 0.633921 CTGAAGGAGGAGGAGGAGGA 59.366 60.000 0.00 0.00 0.00 3.71
786 1199 1.048160 GCTGAAGGAGGAGGAGGAGG 61.048 65.000 0.00 0.00 0.00 4.30
837 1250 4.787280 AGACAGGGCGGGGAGGAG 62.787 72.222 0.00 0.00 0.00 3.69
876 1291 2.711311 CGGGCGAATGATGCTGTG 59.289 61.111 0.00 0.00 0.00 3.66
910 1325 1.664965 GTTTCGACGAGCAGCTGGT 60.665 57.895 20.31 20.31 0.00 4.00
956 1371 3.444805 GAGAGCAGCCGAGGACGT 61.445 66.667 0.00 0.00 37.88 4.34
1101 1531 2.126031 GGCTTCTCGACGGTGGAC 60.126 66.667 0.00 0.00 0.00 4.02
1422 1853 0.248825 GGCAAATCAACGCACACACA 60.249 50.000 0.00 0.00 0.00 3.72
1441 1977 2.988010 TTACTAGCCTCCTGCACATG 57.012 50.000 0.00 0.00 44.83 3.21
1613 2601 5.369409 AGATTCAGCAATGATCTTCCAGA 57.631 39.130 0.00 0.00 0.00 3.86
1795 2783 1.747709 GTGCATCTGAGATGCCTTGT 58.252 50.000 36.22 0.00 43.94 3.16
1910 2898 2.884639 GCCACCTATGTTCGCCATTATT 59.115 45.455 0.00 0.00 34.86 1.40
1913 2901 0.034574 TGCCACCTATGTTCGCCATT 60.035 50.000 0.00 0.00 34.86 3.16
1959 2947 3.126858 GCAGATAATTGAAGGAACGCACA 59.873 43.478 0.00 0.00 0.00 4.57
2252 3254 6.932356 ATGGCTATTTAGACAGAACACATG 57.068 37.500 0.00 0.00 46.08 3.21
2297 3299 0.036388 GATTCAGGAACCACGCAGGA 60.036 55.000 0.93 0.00 41.22 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.