>input_sequence_82426
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---------------------------------------------------------------------ATGTCGCAGGC
CAAGCGGTACGTGCTGCGCCTCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCG
TGGTCACCGCGTCCACCGTCGAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCGCT
GCCGTTGGCGAGGTGCTCGCCATGCGCCTCCGGGTGGACGGCCTGGCCAGCGAGCCCATCCACGCCGACGCCGCCAAGGA
GGTCGAGAAGAAGGGCTTCAAGAACCGCACCAAGGTCTGGGCCATCCTGAACGCGCTCCGCAGCCACGGCGTCAACCTCC
ACGTCGACGACGACGGCGACCATAGGCGGCATGTCTGA------------------------------------------
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>chr5A_1_TraesCS5A01G349800
AAAGAAAGAAAAGTGAAATTTTCTGGTCATTGAAATCATTTACATTGTAAACCAACAATATAGTCTTCGTTCAACTACCT
TATCTAAAATTCTTTATATATTTGAAGGTGTGTCTGGAAGACAATTAATTAAGCCTAACTGATCGATAACATTTTTTTAT
CAGCTAAGTGAACTCAGGACTACACC------------------------------------------------------
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------------------------TGTCCAAATTCACATTATTCTACCTCGGAGGCTAAACGAGACCTTTCGTGTAACAC
TAAGGCCTCGTTTGACAAGGGAGGTTTTGCAGCCCCGGAGTGGAGGAGGGTCTGAGAGGATTTGGTTAATCCCTCTCTTT
CACCCAATCCCCTCAATTCCCCACTAATTTCTCCCTCTCATAAATCCATCTATTTGGTTAAACCTCCTACAACAGTAGCA
GCATAGCAAACG--------------------------------------------------------------------
-----------------------------TCCAGTTCCCTAGGTGTCTTGGGGTATTTTCTGTACCACATGGATTAAGAA
GGATTCGTGGAGATCGGAAAAGATTGGCCTGCTCAATCCCTACGTATC------------------AAATGGGCTGACAA
GGATTTCCGAGGATTTTGAACCTCTGCAAACCTCCTCTAGCAAACAAGGC------------------------------
------------------------------------CTAATGCACTGTCGAGACGACTATTGTACTTTCTCACCCCTTGT
TAGTGATATGGAACGGGTGTGGTTCACAC-------------------CCCCTTTTCTTCTCACCTTGACAATCGAATAA
TAAGCAACCGGACACTCAC--------ACCGCCTCGCTCAGAAACTGCAGT-----------------------------
--GCCGTTCGCCCTCTCCTG------------CACCGCGCCGGTCGACGTCGCTCCGGCCCGCCCCCGCCTC---CCTCC
TCCTCCTCCTCCTTCAGCGTCGATCTTCATCCGGCCTCGCCCACCGGCGCTCCTCCCCGCCCTGTCTC--GCCGTCCTTC
CGCGTCCCACCACAGCATCATTCGCCCGGTCGCGCCGGGCGCCCACCAGCTGCTCGTCGAAACGCCGCAGAGGCGTTCGA
CCGCCTCCACA-----------CGTCCTCGGCTGCTCTCGCCCTCGC---GGCGGCGGACCGGGT-CCCATGTCGCAGGC
CAAGCGGTACGTGCTGCGCCTCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCG
TGGTCACCGCGTCCACCGTCGAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCGCT
GCCGTTGGCGAGGTGCTCGCCATGCGCCTCCGGGTGGACGGCCTGGCCAGCGAGCCCATCCACGCCGACGCCGCCAAGGA
GGTCGAGAAGAAGGGCTTCAAGAACCGCACCAAGGTCTGGGCCATCCTGAACGCGCTCCGCAGCCACGGCGTCAACCTCC
ACGTCGACGACGACGGCGACCATAGGCGGCATGTCTGACGAGCATCAGTGCGTTCCTTCAACTCTCTGCCT-CCGTGCCT
GTCATTTGTTTATG------------------------------------------------------------------
---------------------------------------TGTGTGCGTTGATTTGCCATGTGCAGGAGGCTAGTAAAAAA
GTGCAGAAATTTTAGTGCTCTGATTGTAACATGCTGTTCAATGTTGTCTCACTATCCTAGTCTCAGCTCCCAGATAATTT
GATACTCATGTTATTAAGGCTGAACCAGTGAACATCTACGGAGGAAAATG------------------------------
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----------------------ATACATTTAGTTTGATTTTCTGGAAGATCATTGCTGAATCTTAACTTTTTACTACCTA
AACAGAGGAAACTCTGCAATGTTTCTGCATCACTTTTCAGTAAAAAGAAATGAAATGCAGTAACAAATGAACAAAAAGAT
GGAGCAGGGTCACTGCTGTAGTGGCATGGAAATTTATACCCCATATTTTGTTGTCACTTCAGACAAGGCATCTCAGATGC
ACGAAAACCTCAAGAATGTTTTGATTTGCATACTAGCTAACAACAAGGTTTACACCGAACATGCTGTTATTATAATAGCA
TCTACCTCCGACTCGACAATAATGGCGAACATAGGTGGCATGTCTGACAGACAGACATCAGTGTTCTGTGCGTTCCTTCA
ATTATCTGCCTTTGCGCCATACTACTATGCGTTGCTTTGCAAATGTGTAAGGGGCAACAAAATAAAGTGTTAACATGCTA
CTTCGATGTTGCCTCATGCCACTGAACTATTCTAGTTCTCAGGTCTCAATAAAGTGT--------------TAAGCATGA
ACTGTTCTAGTTCTCAGCTCTCAACTAGTTTAATACACATATTAATGTGGCTGAGCATGAACAATTGAGCATCTATAGAG
GCACATGATACATGTAGTTTGCTGTGTTGCAAGGTCACAGCTGAAAATTAACTCATGTGTTCTGTCTAAATAGCCATTTC
TGAACAGATGTTATCCTATCCTGC--GTGGTTCCTGAATCACATTTCACTAAAATGCAGTAGCGAGATTTACACTAAAGC
ACGAATAAAATG
>chr5D_1
AAACAAAGGAAAGTGAAATTTCCTGGTCACTGAAATCATTTACATTGTAAATCAAAAATATAGTCTTCGTACAACTATCT
TATCTTTTTTTTTCTA-----TTGAAGGTGTGTCTAGAAGACAATTAATTAAGCCTAACTGATCGAC-------------
CAGGTAAGTGAACTCCGGGCCACTAGCCTCCAGCTCCGCAAATACTTCCATTGTCTTTCTAACGTCATTGTCTGGCCAAT
CACAACTTATGCGCCCGCGTAGGTTCCGACGCACCCACTTTGCGAATGACTGAATAGAACCCTCTCAATTGATCCGAAGA
AACTGCCGATGATGTTGTACACCTTGTCCAAATTCATATTATTCTGCCTCAGGGGCTTTCACTAGAGGGAATGTATCCGG
TGCACCCGCACTTGTGGTGCTACCGGTGCACCGGATGCCATAGAA-----------------------------------
--------------------------------------------------TATTTTTTTAAATCTGAAAAAATTCTAGCA
TGTTAACACAACATCAATGTATGGTGTCATTAAATTTCATATAAAAATTTGAAATATTTTTTAAGATACAAAAATGACAA
ATTAGATATCAATGTGATAATGGGCCAAATCTAGGACCCAAGTTATGTTATGTACTATTCAGTGTCGAATTTATCATTTT
TATTTTTTTGAGTTATGTTTCGAATTTTGACTTGAAATTTTGTGATAACCTACATTGATGTTGCATAAGTGTGCTTAAAT
TTTTTTTAGAATTTTTTGGACATTTTAAAAGCACAATGTGAGTTCGATGCATCGGTAGCATCACAAACTTCGGTGCACCA
GATATTTTCCTTTTCACTAGATCCTTCGTGTAAACACTAATGCACTGTTGAGATGATTATTGTATTTTCTCACCCATTGT
TAGTAACATGGAATGGGTGTGGTTCACACGATGCTCGGTGATAAACCACCCATTGTCTTGTGACCTTGACAATTGAATGA
TAG----CCGGACACTCGGCCCGCAGTACTGCCTCGCTCAGAAATTGCAGTGCCACGACACGACAGACACTTCCGCACTT
GCGCCGTTCGCCCTCTCCTGCGCGGACGGCTACACCGCGCCGGTCGACGTCGCTCCGGCCCGCCCCCGCCTC---C---C
TCCTCCTCCTTCTTCAGCGTCGATCCTCATCCGGCCTCGCCCACCGGCGGTCCTCCCCGCCCTGTCTCTCGCCGTCCTTC
CCCGTCCCACGACTGCCTCATTCGCCCGGTCGCGTCGGGCGCCCCCCAGCTGCTCGTCGAAACGCCGCAGAGGCGTTCGA
CCCCCTCCGAGCGTGCTAGGCGCGTCCCCGGCTGCTCCCGCGGCGGCGAAGGCGGCGGACCGGATCCCCATGGCGCAGGC
CAAGCGGTACGTGTTGCGGCTCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCG
TGGTCACCGCCTCCACCGTCGAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCACC
GCCGTCGGCGAGGTGCTCGCCATGCGCCTCCGGGTGGACGGCCTGGCGCACGAGCCCATCCACGCCGACGCCGTCAAGGA
GGTCGAGAAGAAGGGCTTCAAGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCC
ACGTCGACGACGACGGCGACCATATGCGGCATGTCTGACGAGCATCAGTGCGTTCCTTC---------------------
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>chr5D_724
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-------------------------------------------------GT-----------------------------
--GCCGTTCGCCCTCTCCTGCGCGGACGGCGACGCCGCGCCGGTCGACGTCGCTCCGGCCCACCCCCGCCTC---C---T
TCCTCCTCCT----------------TCACCCGGTCTCGCCCACCGGCGGTCCTCCCCGCCCTGTCTC--GCCGCCCTTC
CCCGTCCCACGACTGCCTCTTTCGCCCGGTCCCGCCGGGCGCCCCCCAGGTGCTCGTAGAAACGCTGCAG----------
------CCACGCGTGCTAGGCGCGTCCGCGGCGGC------------GGAGGCGGCGGGCCGGGT-CCCATGGCGCAGGC
CAAGCGGTACGTGCTGCGGCTCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCG
TGGTCACCGCCTCCACCGTCGAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCGCC
GCCGTCGGCGAGGTGCTCGCCATGCGCCTCCGGGTGGATGGCCTGGCGCACGAGCCCATCCACGCCGACGCCGCCAAGGA
GGTCGAGAAGAAGGGCTTCAAGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCC
ACGTCGACGACGACGGCGACCATAGGCGGCATGTCTGACGAGCATCAGTGCGTCTCTTGAACC--CTGCCT-CCGTGCCT
GTCATTTGTTTACG------------------------------------------------------------------
---------------------------------------TGTGTGTTTTCATTTGCAATGTGCAGGAGGCTAGTAAAAAA
GTGCAGAAATTTTAGTGCTTTGATTGTAACATGCTGTTCAATGTTGTCTCACTATCCTAGTCTCAGCTCCCAGATAATTT
GATACTCATGTTATTAAGGCTGAACCAGTGAACATCTACGGAGGAAATGCTG-CATTTAGTTTGATTTGTTGCAAGGTCA
CTTCTGAATCTTAACTTGTATCTAGACAGAGGCAACTCTGCAGTGTTTCTGAATCACTTTTCAGTAAAAAGAAAAGAAAT
GCAGTAAAAAAAAAATGCACAAAAAGATCAAGCAGGGTTACTGCTGTAGTGGTTGAAATTTATACCCCATGTCTTGTTGT
CACCTCAGGCAACAATACTGTAACATCAGCCATCTGAGATGCACGAAAACCTCAAGAATGTTTTGATTTGCATACTTCTG
TAGCTAACAACAAGGTTTACACCGAACATGCTGTTATTTTTTTTTAGAAATGGAGGAAGACCCCCGGCCTCTGCATCTGG
ACATGCTGTTCAATGTTGCCTCACTGTCCTAGTCTCAGCTCCCAGCTAGTTTGATACTCATGTTATTAACTCTGAACCAG
TGAACATCTACAGAGGAAAATTATACATTTAGTTTGATTTGCTGGAAGGTCATTGCTGAATCTTAACTTTTTACTCTCTA
AACAGAGGAAACTCTGCAATGTTTCTGAATCACTTTTCAGTAAAAAGAAATGAAATGCAGTAACAAATGAACAAAAAGAT
GAAGCAGGGTCACTGCTGTAGTGGCATGGAAATTTATACCCCATATTTTGTTGTCACTTCAGGCAAGGCATCTCAGATGC
ACGAAAACCTCAAGAATGTTTTGATTTGCATACTAGCTAACAACAAGGTTTACACCAAACATGCTGTTATTATAATAGCA
TCTACCTCCGACTCGACGATGATGGTGAACATAGGT-GCATGTCTGACAGACAGACATCAGTGTTCAGTGTGTTCCTTCA
ATTATCTGCCTTTGCGCCATACTACTATGTGTTGCTTTGCAAATGTGTAAGGGGCAACAAAATAAAGTGTTAACATGCTA
CTTCGATGTTGCCTTATGCCACTGAACTATTCTAGTTCTCAGGTCTCAATATAGTGT--------------TAAGCATGA
ACTGTTCTAGTTCTCAGCTCTCAACTAGTTTAATACACATATTAATGTGGCTGAGCATGAACAATTGAGCATCTGTAGAG
GCACATGATATATGTAGTTTGCTGTGTTGCAAGGTCACAGCTGAAAATTAACTTATGTGTTCTGTCTAAATAGCCATTTC
TGAACAGATGTTATCCTACCCTGCA--TGGTTCCTGAATCACATTTCACTAAAATGCAGTAGCGAAATTTACACTAAAGA
ACGAATAAAATG
>chr5B_744
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--------------------------------CACCGCGCCGGTCGACGCCGCTCCGCCCCGCCCCCGCCCGGCTC---T
CCCTCCTCCTCCTTCAGCGTCGATACTCATCCGGCCTCG----CCGGCGGTCCTCCCGGCCCTGTCTC--GCCGTCCTTC
CGCGTCCCGCTACAGTCTCATTCGGCCGGTCGCGCCGGGCGCCCCCAAGGTGCTCGTCGAAACGCCGCAGAGGCGCTCGG
CCTCCCCCACGCGTGCTAGGCGCGTCCTCGGCTGCTCTCGCGGCGGCG---------GACCGGGTCCTCATGGCGCAGGC
TAAGCGGTACGTGCTGCGCCTCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGTCGCGTCG
TGCTCACCGCCTCCACCGTCGAGAAGCCCCTCCAGGATGGGCTGGAGAGCGGCCGCGCCTGCAACGCCAAGGCAGCCGCC
GCCGTTGGCGAGGTGCTCGCCATGCGCCTCCGGGTCGACGGCCTGGCCCGCGAGCCAATCCACGCCGACGCCTCCAAGGA
GGTCGAGAAGAAGGGCTTCAAGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCC
ACGTAGACGACGACGGCGACCATAGGCGGCACATCTGATGAGCATCAGTGCGTCCCTCCAACTCTCTGCC----------
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>chr5B_745
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---------------------------------ACCACGCCGGACGACGTCGCCCCGCCTCCCCCCTCCCCC---C---T
C---CCTTCTTCCTCAGCGTAGACCCTCCTCCGGCCTCGCCAACCGGCGGTCCTCCCCGCCCAGTCCT--GCCGTCCTTC
CCCGTCGCACGGCCCCCTGTCCCCCTCTTTCAA-CCGGGCGCGCCCCAGCTGCTCGTCGAAACGCCGCAGAGGCGTTCGA
CTGCCTCCACGCGTGCTAGGCGCGCCCCCGGCAGCTCCCGCGGCGGCGGACGCGGCGGGCCAGGTCCCCATGGCGCAGGC
CAAGCGGTACGTGCTGCGCCTCTTCATCTCGCTCAAGTACGTGACGGCCAACGTGGTGGACCGGCAGAGCGGCCGCGTCG
TGGTCACCGCCTCCACCGTCGAGAAGCCCCTCCGGGACGGGCTGGAGTGCGGCCGCGCCTGCAACGCCAAGGCGGCCGCG
GCCGTCGGCGAGGTGCTCGCCATGCGCCTCCGGGTCGACGGCCTGGCGCGCGAGCCCATCCACGCCGACGCCGCCAAGGA
GGTCGAGAAGAAGGGCTTCAAGAACCGCACCAAGGTCTGGGCCATCCTCAACGCGCTCCGCAGCCACGGCGTCAACCTCC
ACGTCGACGACGACGGCGACCATAGGCGGCATGTCTGACAACCATCAGTGCGTCTCTGGAACT--CTGCCCCCCGTGCCT
GTCATTTGTGTACTCCCTCCGTTCGGAATTACTAGTCGCGAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACAT
CCATGTCCGCGACAAGTAATTTGGAACGGAGGGAGTACATGTGTGCGTTGATTTGCAATACACAGCAGGCTAGTAAAAAA
ATGCGGAAATTTAG--GCTTTGATTGTAACATGCTGTTCAATGTTGTCTCACTTTCCTAGTCTCAGCTCCCAGATAATTT
GATACTCATGTTATTAACTCTGAACCAGTGAACATCTACAGAGGAAAATTATACATTTGGTTTGATTTGTTGCAAGGTCA
TTGCTGAATCTTAACTTGTATCTAGACAGAGGCAACTCTGCAATGTTTCTGAATCACTTCTCAGTAAAAAGAAAAGAAAT
GCAGTAAAAA--AAATGCACAAAAAGGTCAAGCAGGGTTACTGCTGTAGTGGCT--------------------------
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----------------------------GAAATTTATACCCCATATCTTGTTGTCACTTCAGGAAAGGCATCTCAGATGC
ACGAAAACCTCAAGAATGTTTTGATTTGCATACTAGCTAACAACAAGGTTTACAGCGAACATGCTGTTATTATAATAGCA
TCTACCTCCGACTCGATGACGACGGCGACCGTAGGTGGCATGTCTGACAGACAGGCATCAGTGTTCAGTGCGTTCCTTCA
ATTCTCTGCCTTTGCGCCATACTACTATGTGTTGCTTTGCAAATGTGTAAGGGGCAACAAAATAAAGTGTTAACATGCTA
CTTCGATGTTGCCTCATGCCACCGTACTGTTCTAGTTCTCAGGTCTCAACTAGTTCACATATTAATGTGGATAAGCATGA
ACTGTTCTAGTTCTCAGTTCTCTA----------------------GTTGCCAAGCAGGAACAATTGAGCACCTACAGAG
GCACATGATACATGTAGTTTGCTTTTTTGCAAGGTCACAGCTGAAAATTAACTTATGTGTTCTGTCTAAATAGCCATTTC
TGAACAGATGTTATCCTACCCTGTGTGTGGTTCCTGAAT-----------------------------------------
------------
>SNPs
---S----S------------S-------S---------------------S---S--------------S------S--
-----SSSS--S-S--SSSSS--------------S------------------------------SSSSSSSSSSSSSS
---S-----------S--S-S--SSS------------------------------------------------------
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------------------------------------S--------S----S-S----SSSSSSSSSSSSSSSSSSSS-SS
-SSSS--S-SS---SSSS-SS-SSSS-SSSSSSSSS-SSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS-----S--SSS-S--SSS-----
SSS--S--S-SS--------------------------------------------------------------------
-------------------------------S--SS---S--S-S-S--SS-SSS-S---S--SS-SS--SS--S-SSSS
SSS--SS-S---S-SS-SSSS--S-SSSSSSS-S--SSSS-SS-SSSS--------------------S--S---S-S-S
SSS---SS--SSS-----S--S-S-SS---S-S-SSSSS-SSSS-S-S--------------------------------
------------------------------------------------S----S--S-------S----------S----
----S-S------S-------------------------------------S--S----S-S-----------S----S-
--SSSSS----------SS----------S--------------S-----------------------------------
----------------------------------------------------------------------------SSS-
-------------------------S-----------------------S------------------------------
----------S-----S---------------------------S-----------------------------------
----------S------------------------------SSSS---------------------------S-------
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----------S--------------------------------------------------------------------S
------------------------------------------------S-------------------------------
------------------------------------------------S-------------------------------
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------------S-------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-------------------S------------------------------------------------------------
-------------------------------------------------S------------------------------
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----------------------------------------S-------S--------------------------SS---
---------------------------S----------------------------------------------------
-S------------------------------------------------------------S-----------------
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-----------------S--S---------------------------------------------S-------------
-----------------------------S--------------------------------------------------
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-----------------------------------------------------S--------------------------
------------------S----------------------------------------------S-------------S
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>forward_502
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--CCCAATCCCCTCAATTCCCC----------------------------------------------------------
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>reverse_2901
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--------------------AATGGCGAACATAGGTGGCA----------------------------------------
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