Multiple sequence alignment - TraesCS5A01G325700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G325700 chr5A 100.000 3578 0 0 1 3578 536265665 536269242 0.000000e+00 6608.0
1 TraesCS5A01G325700 chr5A 90.076 131 13 0 1865 1995 536267469 536267599 1.710000e-38 171.0
2 TraesCS5A01G325700 chr5A 90.076 131 13 0 1805 1935 536267529 536267659 1.710000e-38 171.0
3 TraesCS5A01G325700 chr5A 83.648 159 20 2 2123 2275 671270537 671270695 1.040000e-30 145.0
4 TraesCS5A01G325700 chr5B 89.716 2081 127 37 612 2648 510378598 510380635 0.000000e+00 2577.0
5 TraesCS5A01G325700 chr5B 87.056 394 50 1 2941 3334 456367501 456367109 9.120000e-121 444.0
6 TraesCS5A01G325700 chr5B 91.958 286 22 1 1 286 510378051 510378335 2.000000e-107 399.0
7 TraesCS5A01G325700 chr5B 96.894 161 5 0 318 478 510378438 510378598 1.640000e-68 270.0
8 TraesCS5A01G325700 chr5B 86.179 246 34 0 3332 3577 456367064 456366819 2.120000e-67 267.0
9 TraesCS5A01G325700 chr5B 87.970 133 16 0 1803 1935 510379855 510379987 1.330000e-34 158.0
10 TraesCS5A01G325700 chr5D 90.909 1177 51 24 1581 2722 422762520 422763675 0.000000e+00 1530.0
11 TraesCS5A01G325700 chr5D 92.047 943 44 8 660 1593 422761579 422762499 0.000000e+00 1297.0
12 TraesCS5A01G325700 chr5D 90.890 483 27 2 1 467 422760890 422761371 1.810000e-177 632.0
13 TraesCS5A01G325700 chr5D 89.313 131 14 0 1805 1935 422762804 422762934 7.950000e-37 165.0
14 TraesCS5A01G325700 chr5D 84.795 171 17 5 2113 2277 369290807 369290640 2.860000e-36 163.0
15 TraesCS5A01G325700 chr5D 90.756 119 11 0 1865 1983 422762744 422762862 3.700000e-35 159.0
16 TraesCS5A01G325700 chr5D 90.000 100 8 2 518 615 206590158 206590059 1.040000e-25 128.0
17 TraesCS5A01G325700 chr5D 84.800 125 18 1 2267 2391 50877907 50877784 1.350000e-24 124.0
18 TraesCS5A01G325700 chr2D 92.327 404 30 1 2931 3334 11300365 11299963 1.110000e-159 573.0
19 TraesCS5A01G325700 chr2D 93.089 246 16 1 3333 3578 11299920 11299676 3.400000e-95 359.0
20 TraesCS5A01G325700 chr2D 90.000 100 8 2 518 615 245235730 245235829 1.040000e-25 128.0
21 TraesCS5A01G325700 chr7D 91.337 404 34 1 2931 3334 572307304 572307706 5.220000e-153 551.0
22 TraesCS5A01G325700 chr7D 91.498 247 21 0 3332 3578 572307753 572307999 1.230000e-89 340.0
23 TraesCS5A01G325700 chrUn 90.148 406 38 2 2929 3334 108914299 108913896 8.800000e-146 527.0
24 TraesCS5A01G325700 chrUn 89.879 247 21 3 3332 3578 108913849 108913607 7.460000e-82 315.0
25 TraesCS5A01G325700 chr6D 89.950 398 36 4 2937 3334 375021813 375021420 8.860000e-141 510.0
26 TraesCS5A01G325700 chr6D 90.283 247 24 0 3332 3578 375021373 375021127 1.240000e-84 324.0
27 TraesCS5A01G325700 chr1A 89.724 399 40 1 2937 3334 533330498 533330100 3.190000e-140 508.0
28 TraesCS5A01G325700 chr1A 89.837 246 25 0 3333 3578 533330052 533329807 2.070000e-82 316.0
29 TraesCS5A01G325700 chr3B 89.620 395 40 1 2940 3334 23403727 23403334 5.330000e-138 501.0
30 TraesCS5A01G325700 chr2A 87.376 404 38 5 2931 3334 580277337 580277727 5.450000e-123 451.0
31 TraesCS5A01G325700 chr2A 90.000 100 8 2 518 615 2922066 2921967 1.040000e-25 128.0
32 TraesCS5A01G325700 chr7B 86.076 395 53 1 2940 3334 532183925 532183533 1.190000e-114 424.0
33 TraesCS5A01G325700 chr7B 85.830 247 33 2 3332 3577 118005297 118005052 9.850000e-66 261.0
34 TraesCS5A01G325700 chr7B 82.609 138 20 3 477 610 623571307 623571170 6.280000e-23 119.0
35 TraesCS5A01G325700 chr7B 98.246 57 1 0 475 531 300702956 300702900 2.270000e-17 100.0
36 TraesCS5A01G325700 chr4A 85.366 205 26 3 3332 3534 702904281 702904483 3.620000e-50 209.0
37 TraesCS5A01G325700 chr6A 78.903 237 29 5 2172 2391 558909142 558908910 1.340000e-29 141.0
38 TraesCS5A01G325700 chr4B 93.333 90 6 0 527 616 628078751 628078662 2.240000e-27 134.0
39 TraesCS5A01G325700 chr4B 90.000 100 7 3 518 615 166701524 166701426 3.750000e-25 126.0
40 TraesCS5A01G325700 chr4B 96.552 58 2 0 474 531 548143378 548143435 2.940000e-16 97.1
41 TraesCS5A01G325700 chr6B 90.099 101 8 2 518 616 39312868 39312968 2.900000e-26 130.0
42 TraesCS5A01G325700 chr6B 85.897 78 9 2 455 531 431707946 431707870 8.230000e-12 82.4
43 TraesCS5A01G325700 chr1D 89.109 101 9 2 518 616 11354715 11354615 1.350000e-24 124.0
44 TraesCS5A01G325700 chr1D 89.109 101 9 2 518 616 243460749 243460849 1.350000e-24 124.0
45 TraesCS5A01G325700 chr1D 96.491 57 2 0 475 531 298168121 298168065 1.060000e-15 95.3
46 TraesCS5A01G325700 chr1D 88.158 76 8 1 3398 3472 449316969 449316894 4.920000e-14 89.8
47 TraesCS5A01G325700 chr3D 96.491 57 2 0 475 531 93914195 93914139 1.060000e-15 95.3
48 TraesCS5A01G325700 chr3D 96.491 57 2 0 475 531 119035599 119035655 1.060000e-15 95.3
49 TraesCS5A01G325700 chr3D 96.491 57 2 0 475 531 395959608 395959664 1.060000e-15 95.3
50 TraesCS5A01G325700 chr3D 96.491 57 2 0 475 531 432438899 432438955 1.060000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G325700 chr5A 536265665 536269242 3577 False 2316.666667 6608 93.3840 1 3578 3 chr5A.!!$F2 3577
1 TraesCS5A01G325700 chr5B 510378051 510380635 2584 False 851.000000 2577 91.6345 1 2648 4 chr5B.!!$F1 2647
2 TraesCS5A01G325700 chr5B 456366819 456367501 682 True 355.500000 444 86.6175 2941 3577 2 chr5B.!!$R1 636
3 TraesCS5A01G325700 chr5D 422760890 422763675 2785 False 756.600000 1530 90.7830 1 2722 5 chr5D.!!$F1 2721
4 TraesCS5A01G325700 chr2D 11299676 11300365 689 True 466.000000 573 92.7080 2931 3578 2 chr2D.!!$R1 647
5 TraesCS5A01G325700 chr7D 572307304 572307999 695 False 445.500000 551 91.4175 2931 3578 2 chr7D.!!$F1 647
6 TraesCS5A01G325700 chrUn 108913607 108914299 692 True 421.000000 527 90.0135 2929 3578 2 chrUn.!!$R1 649
7 TraesCS5A01G325700 chr6D 375021127 375021813 686 True 417.000000 510 90.1165 2937 3578 2 chr6D.!!$R1 641
8 TraesCS5A01G325700 chr1A 533329807 533330498 691 True 412.000000 508 89.7805 2937 3578 2 chr1A.!!$R1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 1018 0.105142 ACCCCACTACACACTGGAGT 60.105 55.0 0.0 0.0 43.76 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2827 3015 0.035439 GGAGGAAACCAGATCGGCAA 60.035 55.0 3.85 0.0 39.03 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.411652 GTTTGAGAACTGAAGTGTTTCTACG 58.588 40.000 0.00 0.00 34.31 3.51
146 147 9.152595 GATTTCCCTTACTGAACTGTAGTAAAG 57.847 37.037 5.09 0.30 39.40 1.85
180 181 4.853924 ATGCTCCTGAAAATTTTCGTGT 57.146 36.364 22.51 5.11 40.01 4.49
209 210 2.222027 GGTGCACTTGGATATGGTAGC 58.778 52.381 17.98 0.00 0.00 3.58
210 211 2.222027 GTGCACTTGGATATGGTAGCC 58.778 52.381 10.32 0.00 34.02 3.93
240 241 2.242047 TTTTCGACGACCATGTTCCA 57.758 45.000 0.00 0.00 0.00 3.53
367 452 4.210832 TCGTGTAGTATCATGCTTCTCG 57.789 45.455 0.00 0.00 0.00 4.04
431 516 0.251922 ACTCACGCCTGGGTAGGTTA 60.252 55.000 0.00 0.00 46.41 2.85
468 553 5.171339 ACCATCTGCTGATTGAAAGTAGT 57.829 39.130 11.03 0.00 0.00 2.73
484 569 8.946797 TGAAAGTAGTAGTTTAGTACTCCCTT 57.053 34.615 0.00 3.17 42.53 3.95
487 572 6.716284 AGTAGTAGTTTAGTACTCCCTTCGT 58.284 40.000 0.00 0.00 40.04 3.85
488 573 7.171653 AGTAGTAGTTTAGTACTCCCTTCGTT 58.828 38.462 0.00 0.00 40.04 3.85
489 574 6.507958 AGTAGTTTAGTACTCCCTTCGTTC 57.492 41.667 0.00 0.00 38.33 3.95
491 576 4.414677 AGTTTAGTACTCCCTTCGTTCCT 58.585 43.478 0.00 0.00 28.23 3.36
492 577 5.574188 AGTTTAGTACTCCCTTCGTTCCTA 58.426 41.667 0.00 0.00 28.23 2.94
494 579 6.494835 AGTTTAGTACTCCCTTCGTTCCTAAA 59.505 38.462 0.00 0.00 28.23 1.85
497 582 8.773033 TTAGTACTCCCTTCGTTCCTAAATAT 57.227 34.615 0.00 0.00 0.00 1.28
502 587 6.822170 ACTCCCTTCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
503 588 6.954232 TCCCTTCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
504 589 7.399634 TCCCTTCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
506 591 9.169592 CCCTTCGTTCCTAAATATTTGTCTTTA 57.830 33.333 11.05 0.00 0.00 1.85
550 635 9.988350 GACTACACTTTAAAATATGTCCACATG 57.012 33.333 2.26 0.00 37.15 3.21
551 636 8.458843 ACTACACTTTAAAATATGTCCACATGC 58.541 33.333 2.26 0.00 37.15 4.06
552 637 7.225784 ACACTTTAAAATATGTCCACATGCA 57.774 32.000 2.26 0.00 37.15 3.96
554 639 7.975616 ACACTTTAAAATATGTCCACATGCATC 59.024 33.333 0.00 0.00 37.15 3.91
555 640 7.436080 CACTTTAAAATATGTCCACATGCATCC 59.564 37.037 0.00 0.00 37.15 3.51
556 641 4.572985 AAAATATGTCCACATGCATCCG 57.427 40.909 0.00 0.00 37.15 4.18
557 642 3.490439 AATATGTCCACATGCATCCGA 57.510 42.857 0.00 0.00 37.15 4.55
558 643 2.998316 TATGTCCACATGCATCCGAA 57.002 45.000 0.00 0.00 37.15 4.30
559 644 2.353357 ATGTCCACATGCATCCGAAT 57.647 45.000 0.00 0.00 34.83 3.34
560 645 1.381522 TGTCCACATGCATCCGAATG 58.618 50.000 0.00 0.00 35.87 2.67
561 646 1.339920 TGTCCACATGCATCCGAATGT 60.340 47.619 0.00 0.00 37.50 2.71
563 648 3.930400 CACATGCATCCGAATGTGG 57.070 52.632 7.79 0.00 46.43 4.17
565 650 2.287769 CACATGCATCCGAATGTGGTA 58.712 47.619 7.79 0.00 46.43 3.25
566 651 2.288729 CACATGCATCCGAATGTGGTAG 59.711 50.000 7.79 0.00 46.43 3.18
567 652 2.092968 ACATGCATCCGAATGTGGTAGT 60.093 45.455 0.00 0.00 35.71 2.73
569 654 2.627945 TGCATCCGAATGTGGTAGTTC 58.372 47.619 0.00 0.00 35.18 3.01
571 656 3.206150 GCATCCGAATGTGGTAGTTCAT 58.794 45.455 0.00 0.00 35.18 2.57
572 657 3.627577 GCATCCGAATGTGGTAGTTCATT 59.372 43.478 0.00 0.00 37.04 2.57
573 658 4.096382 GCATCCGAATGTGGTAGTTCATTT 59.904 41.667 0.00 0.00 34.92 2.32
574 659 5.572211 CATCCGAATGTGGTAGTTCATTTG 58.428 41.667 0.00 0.00 34.92 2.32
575 660 4.900684 TCCGAATGTGGTAGTTCATTTGA 58.099 39.130 0.00 0.00 37.53 2.69
576 661 5.309638 TCCGAATGTGGTAGTTCATTTGAA 58.690 37.500 0.00 0.00 37.53 2.69
580 690 7.362056 CCGAATGTGGTAGTTCATTTGAAATCT 60.362 37.037 0.00 0.00 37.53 2.40
662 772 7.066163 GTCAATCCAGTGATGACACATCATAAA 59.934 37.037 15.71 5.14 46.01 1.40
677 787 9.751542 ACACATCATAAAACTACTAGCTGTATC 57.248 33.333 0.00 0.00 0.00 2.24
689 799 6.299805 ACTAGCTGTATCCTGAATTGTTCA 57.700 37.500 0.00 0.00 38.17 3.18
742 852 3.567478 GGTTAGAGACCTCCAATGCAT 57.433 47.619 0.00 0.00 45.55 3.96
837 947 4.608269 TGAAATCATATCCCAAACAGCCA 58.392 39.130 0.00 0.00 0.00 4.75
871 981 1.364626 GCTCTCCACTCCATGCAACG 61.365 60.000 0.00 0.00 0.00 4.10
892 1002 2.093606 GCACACCTTTCTCCTACTACCC 60.094 54.545 0.00 0.00 0.00 3.69
893 1003 2.500504 CACACCTTTCTCCTACTACCCC 59.499 54.545 0.00 0.00 0.00 4.95
894 1004 2.113052 ACACCTTTCTCCTACTACCCCA 59.887 50.000 0.00 0.00 0.00 4.96
895 1005 2.500504 CACCTTTCTCCTACTACCCCAC 59.499 54.545 0.00 0.00 0.00 4.61
896 1006 2.386113 ACCTTTCTCCTACTACCCCACT 59.614 50.000 0.00 0.00 0.00 4.00
897 1007 3.599698 ACCTTTCTCCTACTACCCCACTA 59.400 47.826 0.00 0.00 0.00 2.74
898 1008 3.959449 CCTTTCTCCTACTACCCCACTAC 59.041 52.174 0.00 0.00 0.00 2.73
899 1009 4.571362 CCTTTCTCCTACTACCCCACTACA 60.571 50.000 0.00 0.00 0.00 2.74
900 1010 3.659183 TCTCCTACTACCCCACTACAC 57.341 52.381 0.00 0.00 0.00 2.90
901 1011 2.921612 TCTCCTACTACCCCACTACACA 59.078 50.000 0.00 0.00 0.00 3.72
902 1012 3.022406 CTCCTACTACCCCACTACACAC 58.978 54.545 0.00 0.00 0.00 3.82
903 1013 2.651334 TCCTACTACCCCACTACACACT 59.349 50.000 0.00 0.00 0.00 3.55
904 1014 2.758979 CCTACTACCCCACTACACACTG 59.241 54.545 0.00 0.00 0.00 3.66
905 1015 1.640917 ACTACCCCACTACACACTGG 58.359 55.000 0.00 0.00 0.00 4.00
906 1016 1.148446 ACTACCCCACTACACACTGGA 59.852 52.381 0.00 0.00 0.00 3.86
907 1017 1.825474 CTACCCCACTACACACTGGAG 59.175 57.143 0.00 0.00 33.50 3.86
908 1018 0.105142 ACCCCACTACACACTGGAGT 60.105 55.000 0.00 0.00 43.76 3.85
909 1019 1.056660 CCCCACTACACACTGGAGTT 58.943 55.000 0.00 0.00 38.73 3.01
910 1020 1.270839 CCCCACTACACACTGGAGTTG 60.271 57.143 0.00 0.00 38.73 3.16
978 1093 1.298340 CTACACCACCCATCGCCAA 59.702 57.895 0.00 0.00 0.00 4.52
1020 1143 0.328258 TGGCCTCTTCTTACCTTGCC 59.672 55.000 3.32 0.00 37.90 4.52
1317 1440 2.915659 AGCGTGTGGGAGTCGGAA 60.916 61.111 0.00 0.00 0.00 4.30
1506 1629 1.686110 GGTGTGGAGGACGAGGGAT 60.686 63.158 0.00 0.00 0.00 3.85
1722 1881 0.856490 CTGACGACGACGACGATTCC 60.856 60.000 25.15 11.59 42.66 3.01
1734 1893 3.202706 GATTCCGCCGACTTGCCC 61.203 66.667 0.00 0.00 0.00 5.36
1809 1968 2.752358 CTTCAGCTGCCTCCACCA 59.248 61.111 9.47 0.00 0.00 4.17
1869 2028 1.583495 CTCTGTACTCGTCGCCACCA 61.583 60.000 0.00 0.00 0.00 4.17
1889 2048 3.127533 GGCGGACATGCACCTGAC 61.128 66.667 0.00 0.00 36.28 3.51
2263 2434 3.664888 AGCATGGGCAAGGGCAGA 61.665 61.111 0.00 0.00 44.61 4.26
2396 2576 1.795170 TTGGCTGCTCTGGTTTTCGC 61.795 55.000 0.00 0.00 0.00 4.70
2413 2595 5.660629 TTTCGCGTAGTTTTTCATTCTCA 57.339 34.783 5.77 0.00 0.00 3.27
2416 2598 5.617609 TCGCGTAGTTTTTCATTCTCATTG 58.382 37.500 5.77 0.00 0.00 2.82
2434 2616 6.209192 TCTCATTGGCAAGTTTGTATCACATT 59.791 34.615 5.96 0.00 0.00 2.71
2435 2617 6.389091 TCATTGGCAAGTTTGTATCACATTC 58.611 36.000 5.96 0.00 0.00 2.67
2436 2618 5.781210 TTGGCAAGTTTGTATCACATTCA 57.219 34.783 0.00 0.00 0.00 2.57
2437 2619 5.119931 TGGCAAGTTTGTATCACATTCAC 57.880 39.130 0.00 0.00 0.00 3.18
2438 2620 4.582240 TGGCAAGTTTGTATCACATTCACA 59.418 37.500 0.00 0.00 0.00 3.58
2439 2621 5.243507 TGGCAAGTTTGTATCACATTCACAT 59.756 36.000 0.00 0.00 0.00 3.21
2442 2624 7.031372 GCAAGTTTGTATCACATTCACATCAT 58.969 34.615 0.00 0.00 0.00 2.45
2446 2628 8.768019 AGTTTGTATCACATTCACATCATATCG 58.232 33.333 0.00 0.00 0.00 2.92
2454 2636 5.819379 ACATTCACATCATATCGCTCACTTT 59.181 36.000 0.00 0.00 0.00 2.66
2466 2648 9.767684 CATATCGCTCACTTTTGTAATTTTGTA 57.232 29.630 0.00 0.00 0.00 2.41
2470 2652 8.963130 TCGCTCACTTTTGTAATTTTGTATTTG 58.037 29.630 0.00 0.00 0.00 2.32
2474 2656 9.039870 TCACTTTTGTAATTTTGTATTTGCTGG 57.960 29.630 0.00 0.00 0.00 4.85
2475 2657 7.798052 CACTTTTGTAATTTTGTATTTGCTGGC 59.202 33.333 0.00 0.00 0.00 4.85
2476 2658 6.793492 TTTGTAATTTTGTATTTGCTGGCC 57.207 33.333 0.00 0.00 0.00 5.36
2493 2675 1.302993 CCGGGTTGGGTTCGTTCAT 60.303 57.895 0.00 0.00 0.00 2.57
2498 2680 0.893727 GTTGGGTTCGTTCATGGGCT 60.894 55.000 0.00 0.00 0.00 5.19
2581 2769 6.151004 TCATGTTATGCTTTGTGTTGATGTG 58.849 36.000 0.00 0.00 0.00 3.21
2601 2789 2.498078 TGTTCCATGTATCGGCAGTACA 59.502 45.455 0.00 2.04 36.58 2.90
2602 2790 2.864343 GTTCCATGTATCGGCAGTACAC 59.136 50.000 0.00 0.00 35.11 2.90
2661 2849 7.823745 TTTTCTTTATCTATCCTTGATGCCC 57.176 36.000 0.00 0.00 0.00 5.36
2662 2850 6.770286 TTCTTTATCTATCCTTGATGCCCT 57.230 37.500 0.00 0.00 0.00 5.19
2663 2851 6.119240 TCTTTATCTATCCTTGATGCCCTG 57.881 41.667 0.00 0.00 0.00 4.45
2664 2852 2.875094 ATCTATCCTTGATGCCCTGC 57.125 50.000 0.00 0.00 0.00 4.85
2667 2855 2.158711 TCTATCCTTGATGCCCTGCTTG 60.159 50.000 0.00 0.00 0.00 4.01
2674 2862 0.607489 GATGCCCTGCTTGACAGTGT 60.607 55.000 0.00 0.00 45.68 3.55
2710 2898 2.415776 ACAATGGCAGCCAATTTTTCG 58.584 42.857 20.84 0.00 36.95 3.46
2722 2910 3.510719 CAATTTTTCGGTATGGCCTGTG 58.489 45.455 3.32 0.00 34.25 3.66
2723 2911 2.279935 TTTTTCGGTATGGCCTGTGT 57.720 45.000 3.32 0.00 34.25 3.72
2724 2912 1.529226 TTTTCGGTATGGCCTGTGTG 58.471 50.000 3.32 0.00 34.25 3.82
2725 2913 0.687920 TTTCGGTATGGCCTGTGTGA 59.312 50.000 3.32 0.00 34.25 3.58
2726 2914 0.249120 TTCGGTATGGCCTGTGTGAG 59.751 55.000 3.32 0.00 34.25 3.51
2727 2915 1.815421 CGGTATGGCCTGTGTGAGC 60.815 63.158 3.32 0.00 34.25 4.26
2728 2916 1.299648 GGTATGGCCTGTGTGAGCA 59.700 57.895 3.32 0.00 0.00 4.26
2729 2917 0.745845 GGTATGGCCTGTGTGAGCAG 60.746 60.000 3.32 0.00 36.31 4.24
2730 2918 1.078214 TATGGCCTGTGTGAGCAGC 60.078 57.895 3.32 0.00 35.28 5.25
2731 2919 1.556373 TATGGCCTGTGTGAGCAGCT 61.556 55.000 3.32 0.00 35.28 4.24
2732 2920 1.556373 ATGGCCTGTGTGAGCAGCTA 61.556 55.000 3.32 0.00 35.28 3.32
2733 2921 1.449246 GGCCTGTGTGAGCAGCTAG 60.449 63.158 0.00 0.00 35.28 3.42
2734 2922 2.105466 GCCTGTGTGAGCAGCTAGC 61.105 63.158 6.62 6.62 46.19 3.42
2743 2931 2.105930 GCAGCTAGCCGGACAGAG 59.894 66.667 12.13 0.00 37.23 3.35
2744 2932 2.716017 GCAGCTAGCCGGACAGAGT 61.716 63.158 12.13 0.00 37.23 3.24
2745 2933 1.140589 CAGCTAGCCGGACAGAGTG 59.859 63.158 12.13 0.00 0.00 3.51
2746 2934 2.055042 AGCTAGCCGGACAGAGTGG 61.055 63.158 12.13 0.00 0.00 4.00
2747 2935 2.352032 GCTAGCCGGACAGAGTGGT 61.352 63.158 5.05 0.00 0.00 4.16
2748 2936 1.035932 GCTAGCCGGACAGAGTGGTA 61.036 60.000 5.05 0.00 0.00 3.25
2749 2937 1.025812 CTAGCCGGACAGAGTGGTAG 58.974 60.000 5.05 0.00 0.00 3.18
2750 2938 0.622136 TAGCCGGACAGAGTGGTAGA 59.378 55.000 5.05 0.00 0.00 2.59
2751 2939 0.966370 AGCCGGACAGAGTGGTAGAC 60.966 60.000 5.05 0.00 0.00 2.59
2752 2940 1.946475 GCCGGACAGAGTGGTAGACC 61.946 65.000 5.05 0.00 0.00 3.85
2753 2941 0.611062 CCGGACAGAGTGGTAGACCA 60.611 60.000 0.00 0.00 45.30 4.02
2766 2954 4.688021 TGGTAGACCAAAACAATGCAAAC 58.312 39.130 0.00 0.00 44.35 2.93
2767 2955 4.160439 TGGTAGACCAAAACAATGCAAACA 59.840 37.500 0.00 0.00 44.35 2.83
2768 2956 5.112686 GGTAGACCAAAACAATGCAAACAA 58.887 37.500 0.00 0.00 35.64 2.83
2769 2957 5.582665 GGTAGACCAAAACAATGCAAACAAA 59.417 36.000 0.00 0.00 35.64 2.83
2770 2958 5.544136 AGACCAAAACAATGCAAACAAAC 57.456 34.783 0.00 0.00 0.00 2.93
2771 2959 4.999950 AGACCAAAACAATGCAAACAAACA 59.000 33.333 0.00 0.00 0.00 2.83
2772 2960 5.647225 AGACCAAAACAATGCAAACAAACAT 59.353 32.000 0.00 0.00 0.00 2.71
2773 2961 6.820656 AGACCAAAACAATGCAAACAAACATA 59.179 30.769 0.00 0.00 0.00 2.29
2774 2962 7.335422 AGACCAAAACAATGCAAACAAACATAA 59.665 29.630 0.00 0.00 0.00 1.90
2775 2963 7.994194 ACCAAAACAATGCAAACAAACATAAT 58.006 26.923 0.00 0.00 0.00 1.28
2776 2964 8.127954 ACCAAAACAATGCAAACAAACATAATC 58.872 29.630 0.00 0.00 0.00 1.75
2777 2965 7.590689 CCAAAACAATGCAAACAAACATAATCC 59.409 33.333 0.00 0.00 0.00 3.01
2778 2966 7.798596 AAACAATGCAAACAAACATAATCCA 57.201 28.000 0.00 0.00 0.00 3.41
2779 2967 6.783892 ACAATGCAAACAAACATAATCCAC 57.216 33.333 0.00 0.00 0.00 4.02
2780 2968 6.286758 ACAATGCAAACAAACATAATCCACA 58.713 32.000 0.00 0.00 0.00 4.17
2781 2969 6.202570 ACAATGCAAACAAACATAATCCACAC 59.797 34.615 0.00 0.00 0.00 3.82
2782 2970 5.268118 TGCAAACAAACATAATCCACACA 57.732 34.783 0.00 0.00 0.00 3.72
2783 2971 5.664457 TGCAAACAAACATAATCCACACAA 58.336 33.333 0.00 0.00 0.00 3.33
2784 2972 6.108687 TGCAAACAAACATAATCCACACAAA 58.891 32.000 0.00 0.00 0.00 2.83
2785 2973 6.036517 TGCAAACAAACATAATCCACACAAAC 59.963 34.615 0.00 0.00 0.00 2.93
2786 2974 6.036517 GCAAACAAACATAATCCACACAAACA 59.963 34.615 0.00 0.00 0.00 2.83
2787 2975 7.413438 GCAAACAAACATAATCCACACAAACAA 60.413 33.333 0.00 0.00 0.00 2.83
2788 2976 8.446273 CAAACAAACATAATCCACACAAACAAA 58.554 29.630 0.00 0.00 0.00 2.83
2789 2977 7.532682 ACAAACATAATCCACACAAACAAAC 57.467 32.000 0.00 0.00 0.00 2.93
2790 2978 7.099764 ACAAACATAATCCACACAAACAAACA 58.900 30.769 0.00 0.00 0.00 2.83
2791 2979 7.604164 ACAAACATAATCCACACAAACAAACAA 59.396 29.630 0.00 0.00 0.00 2.83
2792 2980 8.610896 CAAACATAATCCACACAAACAAACAAT 58.389 29.630 0.00 0.00 0.00 2.71
2793 2981 7.712264 ACATAATCCACACAAACAAACAATG 57.288 32.000 0.00 0.00 0.00 2.82
2794 2982 7.495901 ACATAATCCACACAAACAAACAATGA 58.504 30.769 0.00 0.00 0.00 2.57
2795 2983 7.984050 ACATAATCCACACAAACAAACAATGAA 59.016 29.630 0.00 0.00 0.00 2.57
2796 2984 8.991026 CATAATCCACACAAACAAACAATGAAT 58.009 29.630 0.00 0.00 0.00 2.57
2797 2985 7.481275 AATCCACACAAACAAACAATGAATC 57.519 32.000 0.00 0.00 0.00 2.52
2798 2986 5.039984 TCCACACAAACAAACAATGAATCG 58.960 37.500 0.00 0.00 0.00 3.34
2799 2987 5.039984 CCACACAAACAAACAATGAATCGA 58.960 37.500 0.00 0.00 0.00 3.59
2800 2988 5.051774 CCACACAAACAAACAATGAATCGAC 60.052 40.000 0.00 0.00 0.00 4.20
2801 2989 5.514559 CACACAAACAAACAATGAATCGACA 59.485 36.000 0.00 0.00 0.00 4.35
2802 2990 6.034363 CACACAAACAAACAATGAATCGACAA 59.966 34.615 0.00 0.00 0.00 3.18
2803 2991 6.253298 ACACAAACAAACAATGAATCGACAAG 59.747 34.615 0.00 0.00 0.00 3.16
2804 2992 6.471841 CACAAACAAACAATGAATCGACAAGA 59.528 34.615 0.00 0.00 0.00 3.02
2805 2993 7.167968 CACAAACAAACAATGAATCGACAAGAT 59.832 33.333 0.00 0.00 42.43 2.40
2819 3007 6.871044 TCGACAAGATTCGATAAAACAGAG 57.129 37.500 0.00 0.00 43.01 3.35
2820 3008 6.617879 TCGACAAGATTCGATAAAACAGAGA 58.382 36.000 0.00 0.00 43.01 3.10
2821 3009 6.527023 TCGACAAGATTCGATAAAACAGAGAC 59.473 38.462 0.00 0.00 43.01 3.36
2822 3010 6.308041 CGACAAGATTCGATAAAACAGAGACA 59.692 38.462 0.00 0.00 41.78 3.41
2823 3011 7.352719 ACAAGATTCGATAAAACAGAGACAC 57.647 36.000 0.00 0.00 0.00 3.67
2824 3012 6.369065 ACAAGATTCGATAAAACAGAGACACC 59.631 38.462 0.00 0.00 0.00 4.16
2825 3013 5.420409 AGATTCGATAAAACAGAGACACCC 58.580 41.667 0.00 0.00 0.00 4.61
2826 3014 4.610605 TTCGATAAAACAGAGACACCCA 57.389 40.909 0.00 0.00 0.00 4.51
2827 3015 4.819105 TCGATAAAACAGAGACACCCAT 57.181 40.909 0.00 0.00 0.00 4.00
2828 3016 5.160607 TCGATAAAACAGAGACACCCATT 57.839 39.130 0.00 0.00 0.00 3.16
2829 3017 4.935205 TCGATAAAACAGAGACACCCATTG 59.065 41.667 0.00 0.00 0.00 2.82
2830 3018 4.437390 CGATAAAACAGAGACACCCATTGC 60.437 45.833 0.00 0.00 0.00 3.56
2831 3019 1.620822 AAACAGAGACACCCATTGCC 58.379 50.000 0.00 0.00 0.00 4.52
2832 3020 0.606401 AACAGAGACACCCATTGCCG 60.606 55.000 0.00 0.00 0.00 5.69
2833 3021 1.296392 CAGAGACACCCATTGCCGA 59.704 57.895 0.00 0.00 0.00 5.54
2834 3022 0.107508 CAGAGACACCCATTGCCGAT 60.108 55.000 0.00 0.00 0.00 4.18
2835 3023 0.179000 AGAGACACCCATTGCCGATC 59.821 55.000 0.00 0.00 0.00 3.69
2836 3024 0.179000 GAGACACCCATTGCCGATCT 59.821 55.000 0.00 0.00 0.00 2.75
2837 3025 0.107508 AGACACCCATTGCCGATCTG 60.108 55.000 0.00 0.00 0.00 2.90
2838 3026 1.077501 ACACCCATTGCCGATCTGG 60.078 57.895 0.00 0.00 42.50 3.86
2839 3027 1.077501 CACCCATTGCCGATCTGGT 60.078 57.895 5.66 0.00 41.21 4.00
2840 3028 0.680921 CACCCATTGCCGATCTGGTT 60.681 55.000 5.66 0.00 41.21 3.67
2841 3029 0.039618 ACCCATTGCCGATCTGGTTT 59.960 50.000 5.66 0.00 41.21 3.27
2842 3030 0.740737 CCCATTGCCGATCTGGTTTC 59.259 55.000 5.66 0.00 41.21 2.78
2843 3031 0.740737 CCATTGCCGATCTGGTTTCC 59.259 55.000 5.66 0.00 41.21 3.13
2844 3032 1.683011 CCATTGCCGATCTGGTTTCCT 60.683 52.381 5.66 0.00 41.21 3.36
2845 3033 1.672881 CATTGCCGATCTGGTTTCCTC 59.327 52.381 5.66 0.00 41.21 3.71
2846 3034 0.035439 TTGCCGATCTGGTTTCCTCC 60.035 55.000 5.66 0.00 41.21 4.30
2847 3035 1.198094 TGCCGATCTGGTTTCCTCCA 61.198 55.000 5.66 0.00 41.21 3.86
2848 3036 0.181350 GCCGATCTGGTTTCCTCCAT 59.819 55.000 5.66 0.00 41.21 3.41
2849 3037 1.811941 GCCGATCTGGTTTCCTCCATC 60.812 57.143 5.66 0.00 41.21 3.51
2850 3038 1.486310 CCGATCTGGTTTCCTCCATCA 59.514 52.381 0.00 0.00 36.84 3.07
2851 3039 2.092968 CCGATCTGGTTTCCTCCATCAA 60.093 50.000 0.00 0.00 36.84 2.57
2852 3040 3.201290 CGATCTGGTTTCCTCCATCAAG 58.799 50.000 0.00 0.00 36.84 3.02
2853 3041 3.549794 GATCTGGTTTCCTCCATCAAGG 58.450 50.000 0.00 0.00 36.84 3.61
2854 3042 2.631384 TCTGGTTTCCTCCATCAAGGA 58.369 47.619 0.00 0.00 46.75 3.36
2863 3051 1.957668 TCCATCAAGGATGACATGCG 58.042 50.000 7.75 0.00 43.07 4.73
2864 3052 1.210234 TCCATCAAGGATGACATGCGT 59.790 47.619 7.75 0.00 43.07 5.24
2865 3053 1.332686 CCATCAAGGATGACATGCGTG 59.667 52.381 15.05 15.05 42.09 5.34
2866 3054 1.019673 ATCAAGGATGACATGCGTGC 58.980 50.000 16.12 0.00 38.69 5.34
2867 3055 0.036105 TCAAGGATGACATGCGTGCT 60.036 50.000 16.12 0.00 35.48 4.40
2868 3056 0.806868 CAAGGATGACATGCGTGCTT 59.193 50.000 9.68 9.26 43.93 3.91
2869 3057 0.806868 AAGGATGACATGCGTGCTTG 59.193 50.000 5.64 6.22 41.87 4.01
2870 3058 1.028330 AGGATGACATGCGTGCTTGG 61.028 55.000 5.64 0.00 28.68 3.61
2871 3059 1.430632 GATGACATGCGTGCTTGGG 59.569 57.895 5.64 0.00 0.00 4.12
2872 3060 2.603135 GATGACATGCGTGCTTGGGC 62.603 60.000 5.64 4.79 39.26 5.36
2873 3061 3.058160 GACATGCGTGCTTGGGCT 61.058 61.111 5.64 0.00 39.59 5.19
2874 3062 1.745115 GACATGCGTGCTTGGGCTA 60.745 57.895 5.64 0.00 39.59 3.93
2875 3063 1.303236 ACATGCGTGCTTGGGCTAA 60.303 52.632 5.64 0.00 39.59 3.09
2876 3064 1.308069 ACATGCGTGCTTGGGCTAAG 61.308 55.000 5.64 6.20 39.59 2.18
2877 3065 1.750399 ATGCGTGCTTGGGCTAAGG 60.750 57.895 12.78 0.00 39.59 2.69
2878 3066 3.815396 GCGTGCTTGGGCTAAGGC 61.815 66.667 12.78 3.76 39.59 4.35
2908 3096 7.984422 CCACATGGCTACAATCTATTATCAA 57.016 36.000 0.00 0.00 0.00 2.57
2909 3097 8.571461 CCACATGGCTACAATCTATTATCAAT 57.429 34.615 0.00 0.00 0.00 2.57
2910 3098 8.456471 CCACATGGCTACAATCTATTATCAATG 58.544 37.037 0.00 0.00 0.00 2.82
2911 3099 9.006839 CACATGGCTACAATCTATTATCAATGT 57.993 33.333 0.00 0.00 0.00 2.71
2934 3122 4.927267 ATGTGAATTGTAAGGTCCTGGA 57.073 40.909 0.00 0.00 0.00 3.86
2961 3149 3.217626 CACCCCTGAAATATCTTGGCTC 58.782 50.000 0.00 0.00 0.00 4.70
2965 3153 2.874701 CCTGAAATATCTTGGCTCACCG 59.125 50.000 0.00 0.00 39.70 4.94
2986 3174 3.181480 CGGTGTCCAACAAAAGAATTGGT 60.181 43.478 3.10 0.00 44.86 3.67
3058 3246 5.065235 TGTTGGCAAGGTAGGTTACTAAAC 58.935 41.667 0.00 0.00 34.66 2.01
3122 3310 9.784531 CCAATATTCCTATATACATGATGTCCC 57.215 37.037 0.00 0.00 0.00 4.46
3211 3401 7.201688 GCAATCAGAAGAGGATAAAAGGAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
3243 3433 5.353956 GTGAATTGGAAAACTTGTTGCCTTT 59.646 36.000 7.03 2.72 0.00 3.11
3353 3592 2.029020 TGTCTCTCTGGGATCAAACACG 60.029 50.000 0.00 0.00 0.00 4.49
3357 3596 4.065088 CTCTCTGGGATCAAACACGAAAA 58.935 43.478 0.00 0.00 0.00 2.29
3394 3633 9.831737 CAGTTTTGGTCTAATATCTTGAAAGTG 57.168 33.333 0.00 0.00 0.00 3.16
3479 3718 1.522900 AGATTGGTGGGTAGGGGATG 58.477 55.000 0.00 0.00 0.00 3.51
3517 3756 8.982091 AGGCTTACCCTTCTTTATTCTTTATC 57.018 34.615 0.00 0.00 43.06 1.75
3543 3782 9.613428 CAGTAATGATCAAGGGATAACAGTTAA 57.387 33.333 0.00 0.00 32.67 2.01
3547 3786 8.970859 ATGATCAAGGGATAACAGTTAAAGAG 57.029 34.615 0.00 0.00 32.67 2.85
3560 3799 7.817418 ACAGTTAAAGAGGCTGTTGATAAAA 57.183 32.000 0.00 0.00 40.13 1.52
3564 3803 9.569122 AGTTAAAGAGGCTGTTGATAAAAGTTA 57.431 29.630 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.819825 AGAAACACTTCAGTTCTCAAACC 57.180 39.130 0.00 0.00 35.92 3.27
43 44 6.487103 GTGCTAGTTGCTACATAAATCCAAC 58.513 40.000 0.13 0.00 43.37 3.77
70 71 5.069318 TCGGATATGGCATTAGCAAAATCA 58.931 37.500 4.78 0.00 44.61 2.57
146 147 1.482593 AGGAGCATACAGGTGTACAGC 59.517 52.381 17.29 17.29 36.03 4.40
180 181 6.040729 CCATATCCAAGTGCACCAAATGATTA 59.959 38.462 14.63 4.08 0.00 1.75
209 210 2.601314 TCGTCGAAAATAAGATGTGCGG 59.399 45.455 0.00 0.00 0.00 5.69
210 211 3.541516 GGTCGTCGAAAATAAGATGTGCG 60.542 47.826 0.00 0.00 0.00 5.34
240 241 4.058817 CAAAAGCACCGAGAAGACTAACT 58.941 43.478 0.00 0.00 0.00 2.24
290 291 1.043816 ATGTCCCTCACCATAGCGAG 58.956 55.000 0.00 0.00 0.00 5.03
367 452 3.313526 GTGTGTGAACCATATCTGCATCC 59.686 47.826 0.00 0.00 0.00 3.51
431 516 3.822735 CAGATGGTCAAACTGTTGGTGAT 59.177 43.478 0.00 0.00 35.29 3.06
468 553 5.574188 AGGAACGAAGGGAGTACTAAACTA 58.426 41.667 0.00 0.00 39.07 2.24
524 609 9.988350 CATGTGGACATATTTTAAAGTGTAGTC 57.012 33.333 0.00 0.00 34.26 2.59
525 610 8.458843 GCATGTGGACATATTTTAAAGTGTAGT 58.541 33.333 0.00 0.00 34.26 2.73
526 611 8.458052 TGCATGTGGACATATTTTAAAGTGTAG 58.542 33.333 0.00 0.00 34.26 2.74
527 612 8.341892 TGCATGTGGACATATTTTAAAGTGTA 57.658 30.769 0.00 0.00 34.26 2.90
528 613 7.225784 TGCATGTGGACATATTTTAAAGTGT 57.774 32.000 0.00 3.53 34.26 3.55
529 614 7.436080 GGATGCATGTGGACATATTTTAAAGTG 59.564 37.037 2.46 0.00 34.26 3.16
530 615 7.491682 GGATGCATGTGGACATATTTTAAAGT 58.508 34.615 2.46 0.00 34.26 2.66
531 616 6.638063 CGGATGCATGTGGACATATTTTAAAG 59.362 38.462 2.46 0.00 34.26 1.85
532 617 6.319911 TCGGATGCATGTGGACATATTTTAAA 59.680 34.615 2.46 0.00 34.26 1.52
534 619 5.372373 TCGGATGCATGTGGACATATTTTA 58.628 37.500 2.46 0.00 34.26 1.52
535 620 4.206375 TCGGATGCATGTGGACATATTTT 58.794 39.130 2.46 0.00 34.26 1.82
538 623 3.490439 TTCGGATGCATGTGGACATAT 57.510 42.857 2.46 0.00 34.26 1.78
540 625 1.951602 CATTCGGATGCATGTGGACAT 59.048 47.619 2.46 0.00 36.96 3.06
542 627 1.064505 CACATTCGGATGCATGTGGAC 59.935 52.381 2.46 0.00 43.34 4.02
544 629 3.930400 CACATTCGGATGCATGTGG 57.070 52.632 2.46 0.00 43.34 4.17
550 635 2.627945 TGAACTACCACATTCGGATGC 58.372 47.619 2.75 0.00 36.72 3.91
551 636 5.353956 TCAAATGAACTACCACATTCGGATG 59.646 40.000 0.88 0.88 35.99 3.51
552 637 5.496556 TCAAATGAACTACCACATTCGGAT 58.503 37.500 0.00 0.00 35.99 4.18
554 639 5.621197 TTCAAATGAACTACCACATTCGG 57.379 39.130 0.00 0.00 35.99 4.30
555 640 7.530010 AGATTTCAAATGAACTACCACATTCG 58.470 34.615 0.00 0.00 35.99 3.34
556 641 9.696917 AAAGATTTCAAATGAACTACCACATTC 57.303 29.630 0.00 0.00 35.99 2.67
585 695 9.768215 TCCCTCCATTTCTAAATATTTGTCTTT 57.232 29.630 11.05 0.00 0.00 2.52
589 699 9.853177 CTACTCCCTCCATTTCTAAATATTTGT 57.147 33.333 11.05 0.00 0.00 2.83
590 700 9.289782 CCTACTCCCTCCATTTCTAAATATTTG 57.710 37.037 11.05 1.65 0.00 2.32
591 701 9.015146 ACCTACTCCCTCCATTTCTAAATATTT 57.985 33.333 5.89 5.89 0.00 1.40
592 702 8.582891 ACCTACTCCCTCCATTTCTAAATATT 57.417 34.615 0.00 0.00 0.00 1.28
593 703 8.582891 AACCTACTCCCTCCATTTCTAAATAT 57.417 34.615 0.00 0.00 0.00 1.28
599 709 4.175962 TGAAACCTACTCCCTCCATTTCT 58.824 43.478 0.00 0.00 0.00 2.52
601 711 4.325344 CCATGAAACCTACTCCCTCCATTT 60.325 45.833 0.00 0.00 0.00 2.32
604 714 2.196595 CCATGAAACCTACTCCCTCCA 58.803 52.381 0.00 0.00 0.00 3.86
662 772 7.425224 ACAATTCAGGATACAGCTAGTAGTT 57.575 36.000 0.00 0.00 35.85 2.24
689 799 9.462606 CCACCTCTCCTTAAAAATATTAACACT 57.537 33.333 0.00 0.00 0.00 3.55
698 808 3.092301 GCTGCCACCTCTCCTTAAAAAT 58.908 45.455 0.00 0.00 0.00 1.82
702 812 1.003580 CTTGCTGCCACCTCTCCTTAA 59.996 52.381 0.00 0.00 0.00 1.85
703 813 0.615331 CTTGCTGCCACCTCTCCTTA 59.385 55.000 0.00 0.00 0.00 2.69
706 816 2.045536 CCTTGCTGCCACCTCTCC 60.046 66.667 0.00 0.00 0.00 3.71
742 852 2.477245 TCCAACAGCTAGGGCATTAGA 58.523 47.619 0.00 0.00 41.70 2.10
786 896 0.390340 GCTGCGTTCAGTCAGATGGA 60.390 55.000 0.00 0.00 42.29 3.41
797 907 3.476295 TCAAATTGAGATGCTGCGTTC 57.524 42.857 0.00 0.00 0.00 3.95
798 908 3.921119 TTCAAATTGAGATGCTGCGTT 57.079 38.095 0.00 0.00 0.00 4.84
800 910 4.417506 TGATTTCAAATTGAGATGCTGCG 58.582 39.130 3.62 0.00 0.00 5.18
801 911 7.328737 GGATATGATTTCAAATTGAGATGCTGC 59.671 37.037 3.62 0.00 0.00 5.25
804 914 7.663827 TGGGATATGATTTCAAATTGAGATGC 58.336 34.615 3.62 0.00 0.00 3.91
831 941 3.679389 CATCTTAGTCCAGTTTGGCTGT 58.321 45.455 0.00 0.00 43.55 4.40
871 981 2.093606 GGGTAGTAGGAGAAAGGTGTGC 60.094 54.545 0.00 0.00 0.00 4.57
892 1002 1.070758 AGCAACTCCAGTGTGTAGTGG 59.929 52.381 0.00 0.00 46.90 4.00
893 1003 2.408050 GAGCAACTCCAGTGTGTAGTG 58.592 52.381 0.00 0.00 0.00 2.74
894 1004 2.821991 GAGCAACTCCAGTGTGTAGT 57.178 50.000 0.00 0.00 0.00 2.73
920 1030 0.396974 AGGGTTTGGTGCAAGCTCAA 60.397 50.000 0.00 0.00 33.76 3.02
927 1037 0.467290 GTGGAAGAGGGTTTGGTGCA 60.467 55.000 0.00 0.00 0.00 4.57
978 1093 0.463204 CGATGATGGTGTGAGGAGCT 59.537 55.000 0.00 0.00 0.00 4.09
1020 1143 3.715495 CAGCAAGAGTAGCACTAGGATG 58.285 50.000 0.00 0.00 0.00 3.51
1060 1183 2.831894 TAGCTGGAGAGGACGGCGAA 62.832 60.000 16.62 0.00 44.77 4.70
1069 1192 1.537776 CCTTGCGATGTAGCTGGAGAG 60.538 57.143 0.00 0.00 38.13 3.20
1070 1193 0.461548 CCTTGCGATGTAGCTGGAGA 59.538 55.000 0.00 0.00 38.13 3.71
1258 1381 3.069980 GCTGCTGGACGACCTCGAT 62.070 63.158 5.33 0.00 43.02 3.59
1455 1578 2.824936 CCTGCTGACGATCCTCATATCT 59.175 50.000 0.00 0.00 0.00 1.98
1458 1581 1.133482 TCCCTGCTGACGATCCTCATA 60.133 52.381 0.00 0.00 0.00 2.15
1658 1814 3.108289 CAGGCGACGTGTCAGCTG 61.108 66.667 7.63 7.63 32.56 4.24
1659 1815 3.295273 TCAGGCGACGTGTCAGCT 61.295 61.111 0.00 0.00 32.56 4.24
1660 1816 3.106407 GTCAGGCGACGTGTCAGC 61.106 66.667 0.00 4.80 31.07 4.26
1761 1920 2.022129 CGTTGACGGGTCAGACAGC 61.022 63.158 2.17 0.00 41.13 4.40
1794 1953 3.640407 GGTGGTGGAGGCAGCTGA 61.640 66.667 20.43 0.00 0.00 4.26
1935 2094 3.083997 GGGATCGGGTGCCTGACT 61.084 66.667 1.26 0.00 35.01 3.41
2116 2275 2.045926 AGGTGGTGGCGAGAATGC 60.046 61.111 0.00 0.00 0.00 3.56
2263 2434 4.335647 CTGCTGCCCGAACACCCT 62.336 66.667 0.00 0.00 0.00 4.34
2366 2537 2.564975 CAGCCAAAGCCAAGCTCG 59.435 61.111 0.00 0.00 38.25 5.03
2396 2576 5.698832 TGCCAATGAGAATGAAAAACTACG 58.301 37.500 0.00 0.00 0.00 3.51
2413 2595 6.158598 GTGAATGTGATACAAACTTGCCAAT 58.841 36.000 0.00 0.00 0.00 3.16
2416 2598 5.119931 TGTGAATGTGATACAAACTTGCC 57.880 39.130 0.00 0.00 0.00 4.52
2434 2616 5.178061 ACAAAAGTGAGCGATATGATGTGA 58.822 37.500 0.00 0.00 0.00 3.58
2435 2617 5.475273 ACAAAAGTGAGCGATATGATGTG 57.525 39.130 0.00 0.00 0.00 3.21
2436 2618 7.792374 ATTACAAAAGTGAGCGATATGATGT 57.208 32.000 0.00 0.00 0.00 3.06
2437 2619 9.507280 AAAATTACAAAAGTGAGCGATATGATG 57.493 29.630 0.00 0.00 0.00 3.07
2438 2620 9.507280 CAAAATTACAAAAGTGAGCGATATGAT 57.493 29.630 0.00 0.00 0.00 2.45
2439 2621 8.511321 ACAAAATTACAAAAGTGAGCGATATGA 58.489 29.630 0.00 0.00 0.00 2.15
2446 2628 8.764287 AGCAAATACAAAATTACAAAAGTGAGC 58.236 29.630 0.00 0.00 0.00 4.26
2454 2636 4.926238 CGGCCAGCAAATACAAAATTACAA 59.074 37.500 2.24 0.00 0.00 2.41
2466 2648 2.996734 CCAACCCGGCCAGCAAAT 60.997 61.111 2.24 0.00 0.00 2.32
2473 2655 4.960866 AACGAACCCAACCCGGCC 62.961 66.667 0.00 0.00 0.00 6.13
2474 2656 3.359523 GAACGAACCCAACCCGGC 61.360 66.667 0.00 0.00 0.00 6.13
2475 2657 1.302993 ATGAACGAACCCAACCCGG 60.303 57.895 0.00 0.00 0.00 5.73
2476 2658 1.582610 CCATGAACGAACCCAACCCG 61.583 60.000 0.00 0.00 0.00 5.28
2493 2675 1.985159 ACAAGGACATGTCTTAGCCCA 59.015 47.619 24.50 0.00 0.00 5.36
2498 2680 4.350368 TCAGCAACAAGGACATGTCTTA 57.650 40.909 24.50 0.00 31.81 2.10
2581 2769 2.864343 GTGTACTGCCGATACATGGAAC 59.136 50.000 0.00 0.00 35.11 3.62
2636 2824 8.230306 AGGGCATCAAGGATAGATAAAGAAAAT 58.770 33.333 0.00 0.00 0.00 1.82
2639 2827 6.537355 CAGGGCATCAAGGATAGATAAAGAA 58.463 40.000 0.00 0.00 0.00 2.52
2640 2828 5.513788 GCAGGGCATCAAGGATAGATAAAGA 60.514 44.000 0.00 0.00 0.00 2.52
2661 2849 5.511211 TGTTGCAACACACTGTCAAGCAG 62.511 47.826 27.96 0.00 41.51 4.24
2662 2850 1.135431 GTTGCAACACACTGTCAAGCA 60.135 47.619 24.52 0.00 33.11 3.91
2663 2851 1.135431 TGTTGCAACACACTGTCAAGC 60.135 47.619 27.96 0.00 33.17 4.01
2664 2852 2.917701 TGTTGCAACACACTGTCAAG 57.082 45.000 27.96 0.00 33.17 3.02
2667 2855 2.258755 GGTTTGTTGCAACACACTGTC 58.741 47.619 35.10 21.94 39.07 3.51
2674 2862 3.438087 CCATTGTTTGGTTTGTTGCAACA 59.562 39.130 27.96 27.96 40.99 3.33
2710 2898 0.745845 CTGCTCACACAGGCCATACC 60.746 60.000 5.01 0.00 39.61 2.73
2722 2910 2.202810 GTCCGGCTAGCTGCTCAC 60.203 66.667 18.67 10.05 42.39 3.51
2723 2911 2.679996 TGTCCGGCTAGCTGCTCA 60.680 61.111 18.67 15.14 42.39 4.26
2724 2912 2.105930 CTGTCCGGCTAGCTGCTC 59.894 66.667 18.67 12.79 42.39 4.26
2725 2913 2.363018 TCTGTCCGGCTAGCTGCT 60.363 61.111 18.67 7.57 42.39 4.24
2726 2914 2.105930 CTCTGTCCGGCTAGCTGC 59.894 66.667 18.67 6.12 41.94 5.25
2727 2915 1.140589 CACTCTGTCCGGCTAGCTG 59.859 63.158 17.14 17.14 0.00 4.24
2728 2916 2.055042 CCACTCTGTCCGGCTAGCT 61.055 63.158 15.72 0.00 0.00 3.32
2729 2917 1.035932 TACCACTCTGTCCGGCTAGC 61.036 60.000 6.04 6.04 0.00 3.42
2730 2918 1.025812 CTACCACTCTGTCCGGCTAG 58.974 60.000 0.00 0.00 0.00 3.42
2731 2919 0.622136 TCTACCACTCTGTCCGGCTA 59.378 55.000 0.00 0.00 0.00 3.93
2732 2920 0.966370 GTCTACCACTCTGTCCGGCT 60.966 60.000 0.00 0.00 0.00 5.52
2733 2921 1.511768 GTCTACCACTCTGTCCGGC 59.488 63.158 0.00 0.00 0.00 6.13
2734 2922 0.611062 TGGTCTACCACTCTGTCCGG 60.611 60.000 0.00 0.00 42.01 5.14
2735 2923 2.957060 TGGTCTACCACTCTGTCCG 58.043 57.895 0.00 0.00 42.01 4.79
2744 2932 4.160439 TGTTTGCATTGTTTTGGTCTACCA 59.840 37.500 0.00 0.00 45.94 3.25
2745 2933 4.688021 TGTTTGCATTGTTTTGGTCTACC 58.312 39.130 0.00 0.00 0.00 3.18
2746 2934 6.091441 TGTTTGTTTGCATTGTTTTGGTCTAC 59.909 34.615 0.00 0.00 0.00 2.59
2747 2935 6.166279 TGTTTGTTTGCATTGTTTTGGTCTA 58.834 32.000 0.00 0.00 0.00 2.59
2748 2936 4.999950 TGTTTGTTTGCATTGTTTTGGTCT 59.000 33.333 0.00 0.00 0.00 3.85
2749 2937 5.288543 TGTTTGTTTGCATTGTTTTGGTC 57.711 34.783 0.00 0.00 0.00 4.02
2750 2938 5.893897 ATGTTTGTTTGCATTGTTTTGGT 57.106 30.435 0.00 0.00 0.00 3.67
2751 2939 7.590689 GGATTATGTTTGTTTGCATTGTTTTGG 59.409 33.333 0.00 0.00 0.00 3.28
2752 2940 8.127327 TGGATTATGTTTGTTTGCATTGTTTTG 58.873 29.630 0.00 0.00 0.00 2.44
2753 2941 8.127954 GTGGATTATGTTTGTTTGCATTGTTTT 58.872 29.630 0.00 0.00 0.00 2.43
2754 2942 7.281774 TGTGGATTATGTTTGTTTGCATTGTTT 59.718 29.630 0.00 0.00 0.00 2.83
2755 2943 6.765036 TGTGGATTATGTTTGTTTGCATTGTT 59.235 30.769 0.00 0.00 0.00 2.83
2756 2944 6.202570 GTGTGGATTATGTTTGTTTGCATTGT 59.797 34.615 0.00 0.00 0.00 2.71
2757 2945 6.202379 TGTGTGGATTATGTTTGTTTGCATTG 59.798 34.615 0.00 0.00 0.00 2.82
2758 2946 6.286758 TGTGTGGATTATGTTTGTTTGCATT 58.713 32.000 0.00 0.00 0.00 3.56
2759 2947 5.851720 TGTGTGGATTATGTTTGTTTGCAT 58.148 33.333 0.00 0.00 0.00 3.96
2760 2948 5.268118 TGTGTGGATTATGTTTGTTTGCA 57.732 34.783 0.00 0.00 0.00 4.08
2761 2949 6.036517 TGTTTGTGTGGATTATGTTTGTTTGC 59.963 34.615 0.00 0.00 0.00 3.68
2762 2950 7.531280 TGTTTGTGTGGATTATGTTTGTTTG 57.469 32.000 0.00 0.00 0.00 2.93
2763 2951 8.447053 GTTTGTTTGTGTGGATTATGTTTGTTT 58.553 29.630 0.00 0.00 0.00 2.83
2764 2952 7.604164 TGTTTGTTTGTGTGGATTATGTTTGTT 59.396 29.630 0.00 0.00 0.00 2.83
2765 2953 7.099764 TGTTTGTTTGTGTGGATTATGTTTGT 58.900 30.769 0.00 0.00 0.00 2.83
2766 2954 7.531280 TGTTTGTTTGTGTGGATTATGTTTG 57.469 32.000 0.00 0.00 0.00 2.93
2767 2955 8.610896 CATTGTTTGTTTGTGTGGATTATGTTT 58.389 29.630 0.00 0.00 0.00 2.83
2768 2956 7.984050 TCATTGTTTGTTTGTGTGGATTATGTT 59.016 29.630 0.00 0.00 0.00 2.71
2769 2957 7.495901 TCATTGTTTGTTTGTGTGGATTATGT 58.504 30.769 0.00 0.00 0.00 2.29
2770 2958 7.943413 TCATTGTTTGTTTGTGTGGATTATG 57.057 32.000 0.00 0.00 0.00 1.90
2771 2959 9.206870 GATTCATTGTTTGTTTGTGTGGATTAT 57.793 29.630 0.00 0.00 0.00 1.28
2772 2960 7.380870 CGATTCATTGTTTGTTTGTGTGGATTA 59.619 33.333 0.00 0.00 0.00 1.75
2773 2961 6.200665 CGATTCATTGTTTGTTTGTGTGGATT 59.799 34.615 0.00 0.00 0.00 3.01
2774 2962 5.691305 CGATTCATTGTTTGTTTGTGTGGAT 59.309 36.000 0.00 0.00 0.00 3.41
2775 2963 5.039984 CGATTCATTGTTTGTTTGTGTGGA 58.960 37.500 0.00 0.00 0.00 4.02
2776 2964 5.039984 TCGATTCATTGTTTGTTTGTGTGG 58.960 37.500 0.00 0.00 0.00 4.17
2777 2965 5.514559 TGTCGATTCATTGTTTGTTTGTGTG 59.485 36.000 0.00 0.00 0.00 3.82
2778 2966 5.645624 TGTCGATTCATTGTTTGTTTGTGT 58.354 33.333 0.00 0.00 0.00 3.72
2779 2967 6.471841 TCTTGTCGATTCATTGTTTGTTTGTG 59.528 34.615 0.00 0.00 0.00 3.33
2780 2968 6.559810 TCTTGTCGATTCATTGTTTGTTTGT 58.440 32.000 0.00 0.00 0.00 2.83
2781 2969 7.627585 ATCTTGTCGATTCATTGTTTGTTTG 57.372 32.000 0.00 0.00 0.00 2.93
2797 2985 6.308041 TGTCTCTGTTTTATCGAATCTTGTCG 59.692 38.462 0.00 0.00 42.48 4.35
2798 2986 7.412020 GGTGTCTCTGTTTTATCGAATCTTGTC 60.412 40.741 0.00 0.00 0.00 3.18
2799 2987 6.369065 GGTGTCTCTGTTTTATCGAATCTTGT 59.631 38.462 0.00 0.00 0.00 3.16
2800 2988 6.183360 GGGTGTCTCTGTTTTATCGAATCTTG 60.183 42.308 0.00 0.00 0.00 3.02
2801 2989 5.875359 GGGTGTCTCTGTTTTATCGAATCTT 59.125 40.000 0.00 0.00 0.00 2.40
2802 2990 5.046591 TGGGTGTCTCTGTTTTATCGAATCT 60.047 40.000 0.00 0.00 0.00 2.40
2803 2991 5.175859 TGGGTGTCTCTGTTTTATCGAATC 58.824 41.667 0.00 0.00 0.00 2.52
2804 2992 5.160607 TGGGTGTCTCTGTTTTATCGAAT 57.839 39.130 0.00 0.00 0.00 3.34
2805 2993 4.610605 TGGGTGTCTCTGTTTTATCGAA 57.389 40.909 0.00 0.00 0.00 3.71
2806 2994 4.819105 ATGGGTGTCTCTGTTTTATCGA 57.181 40.909 0.00 0.00 0.00 3.59
2807 2995 4.437390 GCAATGGGTGTCTCTGTTTTATCG 60.437 45.833 0.00 0.00 0.00 2.92
2808 2996 4.142381 GGCAATGGGTGTCTCTGTTTTATC 60.142 45.833 0.00 0.00 0.00 1.75
2809 2997 3.763897 GGCAATGGGTGTCTCTGTTTTAT 59.236 43.478 0.00 0.00 0.00 1.40
2810 2998 3.153919 GGCAATGGGTGTCTCTGTTTTA 58.846 45.455 0.00 0.00 0.00 1.52
2811 2999 1.963515 GGCAATGGGTGTCTCTGTTTT 59.036 47.619 0.00 0.00 0.00 2.43
2812 3000 1.620822 GGCAATGGGTGTCTCTGTTT 58.379 50.000 0.00 0.00 0.00 2.83
2813 3001 0.606401 CGGCAATGGGTGTCTCTGTT 60.606 55.000 0.00 0.00 0.00 3.16
2814 3002 1.003355 CGGCAATGGGTGTCTCTGT 60.003 57.895 0.00 0.00 0.00 3.41
2815 3003 0.107508 ATCGGCAATGGGTGTCTCTG 60.108 55.000 0.00 0.00 0.00 3.35
2816 3004 0.179000 GATCGGCAATGGGTGTCTCT 59.821 55.000 0.00 0.00 0.00 3.10
2817 3005 0.179000 AGATCGGCAATGGGTGTCTC 59.821 55.000 0.00 0.00 0.00 3.36
2818 3006 0.107508 CAGATCGGCAATGGGTGTCT 60.108 55.000 0.00 0.00 0.00 3.41
2819 3007 1.097547 CCAGATCGGCAATGGGTGTC 61.098 60.000 0.00 0.00 0.00 3.67
2820 3008 1.077501 CCAGATCGGCAATGGGTGT 60.078 57.895 0.00 0.00 0.00 4.16
2821 3009 0.680921 AACCAGATCGGCAATGGGTG 60.681 55.000 3.26 0.00 38.48 4.61
2822 3010 0.039618 AAACCAGATCGGCAATGGGT 59.960 50.000 3.26 0.00 38.48 4.51
2823 3011 0.740737 GAAACCAGATCGGCAATGGG 59.259 55.000 3.26 0.00 38.48 4.00
2824 3012 0.740737 GGAAACCAGATCGGCAATGG 59.259 55.000 3.85 0.39 39.03 3.16
2825 3013 1.672881 GAGGAAACCAGATCGGCAATG 59.327 52.381 3.85 0.00 39.03 2.82
2826 3014 1.408822 GGAGGAAACCAGATCGGCAAT 60.409 52.381 3.85 0.00 39.03 3.56
2827 3015 0.035439 GGAGGAAACCAGATCGGCAA 60.035 55.000 3.85 0.00 39.03 4.52
2828 3016 1.198094 TGGAGGAAACCAGATCGGCA 61.198 55.000 3.85 0.00 39.03 5.69
2829 3017 0.181350 ATGGAGGAAACCAGATCGGC 59.819 55.000 3.85 0.00 43.49 5.54
2830 3018 1.486310 TGATGGAGGAAACCAGATCGG 59.514 52.381 0.00 2.55 43.49 4.18
2831 3019 2.988010 TGATGGAGGAAACCAGATCG 57.012 50.000 0.00 0.00 43.49 3.69
2832 3020 3.200825 TCCTTGATGGAGGAAACCAGATC 59.799 47.826 0.00 0.00 42.75 2.75
2833 3021 3.192944 TCCTTGATGGAGGAAACCAGAT 58.807 45.455 0.00 0.00 42.75 2.90
2834 3022 2.631384 TCCTTGATGGAGGAAACCAGA 58.369 47.619 0.00 0.00 42.75 3.86
2845 3033 1.332686 CACGCATGTCATCCTTGATGG 59.667 52.381 4.38 0.00 40.15 3.51
2846 3034 1.268386 GCACGCATGTCATCCTTGATG 60.268 52.381 0.00 0.00 41.00 3.07
2847 3035 1.019673 GCACGCATGTCATCCTTGAT 58.980 50.000 0.00 0.00 33.56 2.57
2848 3036 0.036105 AGCACGCATGTCATCCTTGA 60.036 50.000 0.00 0.00 0.00 3.02
2849 3037 0.806868 AAGCACGCATGTCATCCTTG 59.193 50.000 0.00 0.00 0.00 3.61
2850 3038 0.806868 CAAGCACGCATGTCATCCTT 59.193 50.000 0.00 0.00 0.00 3.36
2851 3039 1.028330 CCAAGCACGCATGTCATCCT 61.028 55.000 0.00 0.00 0.00 3.24
2852 3040 1.430632 CCAAGCACGCATGTCATCC 59.569 57.895 0.00 0.00 0.00 3.51
2853 3041 1.430632 CCCAAGCACGCATGTCATC 59.569 57.895 0.00 0.00 0.00 2.92
2854 3042 2.703798 GCCCAAGCACGCATGTCAT 61.704 57.895 0.00 0.00 39.53 3.06
2855 3043 2.462125 TAGCCCAAGCACGCATGTCA 62.462 55.000 0.00 0.00 43.56 3.58
2856 3044 1.305219 TTAGCCCAAGCACGCATGTC 61.305 55.000 0.00 0.00 43.56 3.06
2857 3045 1.303236 TTAGCCCAAGCACGCATGT 60.303 52.632 0.00 0.00 43.56 3.21
2858 3046 1.430632 CTTAGCCCAAGCACGCATG 59.569 57.895 0.00 0.00 43.56 4.06
2859 3047 1.750399 CCTTAGCCCAAGCACGCAT 60.750 57.895 0.00 0.00 43.56 4.73
2860 3048 2.359850 CCTTAGCCCAAGCACGCA 60.360 61.111 0.00 0.00 43.56 5.24
2861 3049 3.815396 GCCTTAGCCCAAGCACGC 61.815 66.667 0.00 0.00 43.56 5.34
2884 3072 7.984422 TTGATAATAGATTGTAGCCATGTGG 57.016 36.000 0.00 0.00 38.53 4.17
2885 3073 9.006839 ACATTGATAATAGATTGTAGCCATGTG 57.993 33.333 0.00 0.00 0.00 3.21
2904 3092 8.686334 GGACCTTACAATTCACATTACATTGAT 58.314 33.333 0.00 0.00 33.02 2.57
2905 3093 7.888021 AGGACCTTACAATTCACATTACATTGA 59.112 33.333 0.00 0.00 33.02 2.57
2906 3094 7.970061 CAGGACCTTACAATTCACATTACATTG 59.030 37.037 0.00 0.00 34.60 2.82
2907 3095 7.122650 CCAGGACCTTACAATTCACATTACATT 59.877 37.037 0.00 0.00 0.00 2.71
2908 3096 6.603201 CCAGGACCTTACAATTCACATTACAT 59.397 38.462 0.00 0.00 0.00 2.29
2909 3097 5.943416 CCAGGACCTTACAATTCACATTACA 59.057 40.000 0.00 0.00 0.00 2.41
2910 3098 6.177610 TCCAGGACCTTACAATTCACATTAC 58.822 40.000 0.00 0.00 0.00 1.89
2911 3099 6.381498 TCCAGGACCTTACAATTCACATTA 57.619 37.500 0.00 0.00 0.00 1.90
2912 3100 5.255397 TCCAGGACCTTACAATTCACATT 57.745 39.130 0.00 0.00 0.00 2.71
2913 3101 4.927267 TCCAGGACCTTACAATTCACAT 57.073 40.909 0.00 0.00 0.00 3.21
2914 3102 4.349636 TCTTCCAGGACCTTACAATTCACA 59.650 41.667 0.00 0.00 0.00 3.58
2915 3103 4.906618 TCTTCCAGGACCTTACAATTCAC 58.093 43.478 0.00 0.00 0.00 3.18
2916 3104 4.844085 TCTCTTCCAGGACCTTACAATTCA 59.156 41.667 0.00 0.00 0.00 2.57
2917 3105 5.179533 GTCTCTTCCAGGACCTTACAATTC 58.820 45.833 0.00 0.00 0.00 2.17
2918 3106 4.597507 TGTCTCTTCCAGGACCTTACAATT 59.402 41.667 0.00 0.00 0.00 2.32
2919 3107 4.020128 GTGTCTCTTCCAGGACCTTACAAT 60.020 45.833 0.00 0.00 0.00 2.71
2920 3108 3.323979 GTGTCTCTTCCAGGACCTTACAA 59.676 47.826 0.00 0.00 0.00 2.41
2921 3109 2.897969 GTGTCTCTTCCAGGACCTTACA 59.102 50.000 0.00 0.00 0.00 2.41
2922 3110 2.234168 GGTGTCTCTTCCAGGACCTTAC 59.766 54.545 0.00 0.00 0.00 2.34
2923 3111 2.537143 GGTGTCTCTTCCAGGACCTTA 58.463 52.381 0.00 0.00 0.00 2.69
2924 3112 1.353091 GGTGTCTCTTCCAGGACCTT 58.647 55.000 0.00 0.00 0.00 3.50
2925 3113 0.545548 GGGTGTCTCTTCCAGGACCT 60.546 60.000 0.00 0.00 0.00 3.85
2926 3114 1.554583 GGGGTGTCTCTTCCAGGACC 61.555 65.000 0.00 0.00 0.00 4.46
2927 3115 0.545548 AGGGGTGTCTCTTCCAGGAC 60.546 60.000 0.00 0.00 0.00 3.85
2934 3122 5.339530 CCAAGATATTTCAGGGGTGTCTCTT 60.340 44.000 0.00 0.00 0.00 2.85
2961 3149 1.384525 TCTTTTGTTGGACACCGGTG 58.615 50.000 32.83 32.83 0.00 4.94
2965 3153 4.400529 ACCAATTCTTTTGTTGGACACC 57.599 40.909 10.80 0.00 46.15 4.16
2986 3174 8.271458 TCAGCTACATTCCTCCACATTTTATTA 58.729 33.333 0.00 0.00 0.00 0.98
3043 3231 5.013808 ACCTGCAATGTTTAGTAACCTACCT 59.986 40.000 0.00 0.00 33.15 3.08
3049 3237 6.872020 TGACTCTACCTGCAATGTTTAGTAAC 59.128 38.462 0.00 0.00 34.75 2.50
3050 3238 6.872020 GTGACTCTACCTGCAATGTTTAGTAA 59.128 38.462 0.00 0.00 0.00 2.24
3058 3246 3.438087 CCAAAGTGACTCTACCTGCAATG 59.562 47.826 0.00 0.00 0.00 2.82
3122 3310 8.041323 TCTAACTCCAGCTGGTAAAAGATAAAG 58.959 37.037 31.58 19.20 36.34 1.85
3211 3401 2.008242 TTTCCAATTCACCAGGTGGG 57.992 50.000 20.14 12.66 44.81 4.61
3343 3582 3.506067 AGTCCCCATTTTCGTGTTTGATC 59.494 43.478 0.00 0.00 0.00 2.92
3490 3729 5.375283 AGAATAAAGAAGGGTAAGCCTCC 57.625 43.478 0.00 0.00 34.45 4.30
3517 3756 9.613428 TTAACTGTTATCCCTTGATCATTACTG 57.387 33.333 0.00 0.00 32.18 2.74
3529 3768 4.536489 ACAGCCTCTTTAACTGTTATCCCT 59.464 41.667 0.37 0.00 41.78 4.20
3543 3782 7.389053 CACTCTAACTTTTATCAACAGCCTCTT 59.611 37.037 0.00 0.00 0.00 2.85
3547 3786 5.705905 ACCACTCTAACTTTTATCAACAGCC 59.294 40.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.