>input_sequence_47841
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--ATGGCCTCTTCTTACCTTGCCATCCTAGTGCTACTCTTGCTGCGGCTCTCCGGCGGCGCCTTCGCCGTCCTCTCCAGC
TACATCGCAAGGACCACCGAGCAGCAGATCATCGCCACCGTCGCGCCGGCCGCCTTCGCCGACGCCGATGACGGCGGCCA
GAGCGCAGCGCAGCCTTTCCTCGCGTCCCCCTCCGGGTCGTTCGCCGCGTACCTCCGCCGCGCCGCCGTGGGCGATGGCG
GTAGCGGGGACGTGTGCTACATCGAGGTCGTCCAGCAGCAGGGGGGCGGTGGCGGGACCAGCAGCGTGTGGGAGTCGGAA
TGCACGCCGGTGGGCGGCGCCGAGACCTGCGACCTGGCCTTCTCGCCGGTGGGGCTCGAGCTCTTCGCCGGCGGGCACTC
GCTGTGGGACACCGCTGTCGACTCCGACCCCGCGATGCTCAGCCTCGACGGCGCCGGAGATATGAGGATCGTCAGCAGGG
ACGGCGTCACGGTGTGGAGGACGAGGGATGAGCCGTGGACGGGGCGGAGGTGCGGCGCCGCGGCCTTGCCGGTGTCGTCG
CCTTCGATGGAGGACGTGCTCCCGCCGCCGT---------------------------------CGGCGACGTCGACTCT
CGCCAGTCCGTGGGGCTCGGGCTTCACTTTCGGAGACCAAACGGCGCCACCAGCAGCTGACACGTCGCCTGACCAGATGC
TGCCGCCGCCACCGCCAGCT---GACGACGACGACGATTCCGCCGACTTGCCCGACCTGCCGCTGCCACCGCCGCCTCCG
CTGTCTGACCCGTCAACGGACTGGCCGGACCTTCAGCTGCCTCCACCACCGGCGGACATGCAACCGACCCCCGAGACGCC
GGACCAGCCTCTGTACTCGTCGCCACCACCGGCGGACATGCACCTGACCCCCGAGACGCCGGACCAGCCTCTGTACTCGT
CGCCACCGCCAGCAGTCAGGCACCCGATCCCCGAGTCGCCGGACCAGCCTCTGCACTCGTCACCACCTCCAGCTCCTCCG
ACCCCCTTTGTCCCGCCTCAGACGCCATCGCCGCCCGTCGACACGCCCCCACTCGTGTCATCTCCCGGCGCGGGCATCGC
CACGCCACCAGCTTCATCGGACGACGACAACATGGCATTCTCGCCACCACCTCACGGCACGCCGCACCCGCACCACCTTC
CCCTGGGAAGCTCGCCGCCGACGGCGCCGGGCGCGGTGGCGCCAATCAGCGGCGGCCATGGCCCGCTCCCGTTCGG----
--GCAGGGGC------AGCATGGGCAAGGGCAGAGGGTGTTCGGGCAGCAGCAGAACCAGCTGCTGAACGGCGGGGGGCA
GCCGCTGGATCACAGCGCCGGCGGGTGGTCAGTCAGGGGGCGCGGCGGAGCGGCCGCGAGCTTGGCTTTGGCTGCTCTGG
T---------TTTCGCGTAGTTTT--TCATTCTCATTGGCAAGTTTGTATCACATTCACATCATATCGCTCACTTTTGTA
ATTTTGTATTTGCTGGCCGGGTTGGGTTCGTTCATGGGCTAA-GACATGTCCTTGTTGCTGAATTAGTTAGGGATTTCTG
GTCAGCATGGCTGGTTTATTCATGTTATGCTTTGTGTTGA----------------------------------------
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>chr5A_1_TraesCS5A01G325700
TGTAGCATGATGCAGCATGGTTTGAGAACTGAAGTGTTTCTACGTTGGATTTATGTAGCAACTAGCACGGTGATTTTGCT
AATGCCATATCCGAAGATCATCAGTGTTGTTGTCTGCAACGATTTCCCTTACTGAACTGTAGTAAAGCTGTACACCTGTA
TGCTCCTGAAAATTTTCGTGTAATCATTTGGTGCACTTGGATATGGTAGCCGCACATCTTATTTTCGACGACCATGTTCC
AGTTAGTCTTCTCGGTGCTTTTGGCGCCTGCACAGCGGGCCATGGAACGCCTCGCTATG---------------------
-------------------------------------------------GTGAGGGACATGTGTGGTTGCATGCTGCATG
CTGT--------------TGAAGGACATTTTCGTGTAGTATCATGCTTCTCGGATGCAGATATGGTTCACACACAAGTTT
TTCCTGACCATGCATCACTCACGCCTGGGTAGGTTATCACCAACAGTTTGACCATCTGCTGATTGAAAGTAGTAGTTTAG
TACTCCCTTCGTTCCTAAATATTTGTCTTTATAGAGATTTTAATAAGTGACTACACTTTAAAATATGTCCACATGCATCC
GAATGTGGTAGTTCATTTGAA-------------------------ATCTTTAAAAAGACAAATATTTAGAAATGGAGGG
AGTAGGTTTCATGGCCTAATGCTCTGTCAATCCAGTGATGACACATCATAAAACTACTAGCTGTATCCTGAATTGTTCAG
TGTTAATATTTTTAAGGAGAGGTGGCAGCAAGGTTAGAGACCTCCAATGCATCTAATGCCCTAGCTGTTGGAACAGGTGA
GCACACCCAAAAAATTCCATCTGACTGAACGCAGCATCTCAATTTGAAATCATATCCCAAACAGCCAAACTGGACTAAGA
TGCTCTCCACTCCATGCAACGCACACCTTTCTCCTACTACCCCACTACACACTGGAGTTGCTCCACAAATTGAGCTTGC-
----ACCAAACCCTCTTCCACCTCCGTTAAAACCCTACACCACCCATCGCCAAGCTCCTCACACC--------ATCATCG
CCATGGCCTCTTCTTACCTTGCCATCCTAGTGCTACTCTTGCTGCGGCTCTCCGGCGGCGCCTTCGCCGTCCTCTCCAGC
TACATCGCAAGGACCACCGAGCAGCAGATCATCGCCACCGTCGCGCCGGCCGCCTTCGCCGACGCCGATGACGGCGGCCA
GAGCGCAGCGCAGCCTTTCCTCGCGTCCCCCTCCGGGTCGTTCGCCGCGTACCTCCGCCGCGCCGCCGTGGGCGATGGCG
GTAGCGGGGACGTGTGCTACATCGAGGTCGTCCAGCAGCAGGGGGGCGGTGGCGGGACCAGCAGCGTGTGGGAGTCGGAA
TGCACGCCGGTGGGCGGCGCCGAGACCTGCGACCTGGCCTTCTCGCCGGTGGGGCTCGAGCTCTTCGCCGGCGGGCACTC
GCTGTGGGACACCGCTGTCGACTCCGACCCCGCGATGCTCAGCCTCGACGGCGCCGGAGATATGAGGATCGTCAGCAGGG
ACGGCGTCACGGTGTGGAGGACGAGGGATGAGCCGTGGACGGGGCGGAGGTGCGGCGCCGCGGCCTTGCCGGTGTCGTCG
CCTTCGATGGAGGACGTGCTCCCGCCGCCGT---------------------------------CGGCGACGTCGACTCT
CGCCAGTCCGTGGGGCTCGGGCTTCACTTTCGGAGACCAAACGGCGCCACCAGCAGCTGACACGTCGCCTGACCAGATGC
TGCCGCCGCCACCGCCAGCT---GACGACGACGACGATTCCGCCGACTTGCCCGACCTGCCGCTGCCACCGCCGCCTCCG
CTGTCTGACCCGTCAACGGACTGGCCGGACCTTCAGCTGCCTCCACCACCGGCGGACATGCAACCGACCCCCGAGACGCC
GGACCAGCCTCTGTACTCGTCGCCACCACCGGCGGACATGCACCTGACCCCCGAGACGCCGGACCAGCCTCTGTACTCGT
CGCCACCGCCAGCAGTCAGGCACCCGATCCCCGAGTCGCCGGACCAGCCTCTGCACTCGTCACCACCTCCAGCTCCTCCG
ACCCCCTTTGTCCCGCCTCAGACGCCATCGCCGCCCGTCGACACGCCCCCACTCGTGTCATCTCCCGGCGCGGGCATCGC
CACGCCACCAGCTTCATCGGACGACGACAACATGGCATTCTCGCCACCACCTCACGGCACGCCGCACCCGCACCACCTTC
CCCTGGGAAGCTCGCCGCCGACGGCGCCGGGCGCGGTGGCGCCAATCAGCGGCGGCCATGGCCCGCTCCCGTTCGG----
--GCAGGGGC------AGCATGGGCAAGGGCAGAGGGTGTTCGGGCAGCAGCAGAACCAGCTGCTGAACGGCGGGGGGCA
GCCGCTGGATCACAGCGCCGGCGGGTGGTCAGTCAGGGGGCGCGGCGGAGCGGCCGCGAGCTTGGCTTTGGCTGCTCTGG
T---------TTTCGCGTAGTTTT--TCATTCTCATTGGCAAGTTTGTATCACATTCACATCATATCGCTCACTTTTGTA
ATTTTGTATTTGCTGGCCGGGTTGGGTTCGTTCATGGGCTAA-GACATGTCCTTGTTGCTGAATTAGTTAGGGATTTCTG
GTCAGCATGGCTGGTTTATTCATGTTATGCTTTGTGTTGATGT-----GTTCCATGTATCGGCAGTACACTCTCTGGTGT
TTTCTATATTTTCTTTTAACTATATTTTCTTTATCTATCCTTGATGCCCTGCTTGACAGTGTGTTGCAACAAACCAAACA
ATGGCAGCCAATTTTTCGGTATGGCCTGTGTGAGCAGCTAGCCGGACAGAGTGGTAGACCAAAACAATGCAAACAAACAT
AATCCACACAAACAAACAATGAATCGACAAGATTCGATAAAACAGAGACACCCATTGCCGATCTGGTTTCCTCCATCAAG
GATGACATGCGTGCTTGGGCTAAGGCCGGCGCCACATGGCTACAATCTATTATCAATGTAATGTGAATTGTAAGGTCCTG
GAAGAGACACCCCTGAAATATCTTGGCTCACCGGTGTCCAACAAAAGAATTGGTAATAAAATGTGGAGGAATGTAGCTGA
GAAAATTAAGAAAAGATGTGCCTGTTGGCAAGGTAGGTTACTAAACATTGCAGGTAGAGTCACTTTGGTGCAGTCCTGCT
TGTCCAATATTCCTATATACATGATGTCCCTTTATCTTTTACCAGCTGGAGTTAG--AAAAAAAATTGGATTTTTACAGA
GCCAGGATGGTGTGGCAATCAGAAGAGGATAAAAGGAAGTCCCACCTGGTGAATTGGAAAACTTGTTGCCTTTCAAAACA
GCAAGGGGGGCTGGGGATTACCAACATTGAAATGTTCAACATTGCTTTGTTAGCTAAGTGGTTGTGGAAAATAGAGAATG
-------------------------------------------------ATGTCTCTCTGGGATCAAACACGAAAATGGG
GACTCCCAGTTTTGGTCTAATATCTTGAAAGTGAGAAAATACTTCTACCCACATATTAAGAAAAAATTGGGGGATGGAAA
AAATACTAGGTTTTGGGAAGATTGGTGGGTAGGGGATGAACCTCTCAAGGAGGCTTACCCTTCTTTATTCTTTATCAGTA
ATGATCAAGGGATAACAGTTAAAGAGGCTGTTGATAAAAGTTAGAGTGGTTTTACT
>chr5B_1
TGTAGCATGATGCAGCATAGTTTGAGAACTGAAGTGTTTGTACTTTGGATTTATGTAGCAACTAGCACTGCTATTTTGCT
AATGCCATATCCGAAGATCATCAGTGTTGTTATCTGCAACGATTTCCCTTACTCAACTGTAGTAAA-TTGTACACCTATA
TGCTCCTGAAATTTTTCGTGAAATCATCTGGTGCACTTGGATATGGTAGTTGCACATCTTTTTTTCGACGACCATGCTCC
GTTTAGTCTTGTCGGTGCTTTTGGTGCCTGCACAGCGGGTCATGGA-------------GTGTTGCATTTCCCACTGCGA
GGGACATTTCCGGTTGCATGCTGCATCATGGAGTGTTGCATTTCCCACTGTGAGGGACATTTCCGGTTGCATGCTGCATG
CTGCATGCTGCATGCTGGTGAAGGACATTTTCGTGTAGTATCATGCTTCTCTGATGCAGATATGGTTCACACACAGGTTT
TTCCTGACCATGCATCACTCACGCCTGGGTAGGTTGTCACCAACAGTTTGACCATCTGCTGATTGAAAGTAGCAGTTTAG
TA------------------------------------------------------------------------------
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-GTAGGTTTCATCGCCTAATGCTCTGTCAATCCAGTGATGACACATCATAACACTACTAGCTGCATACTGAATTGTTCTG
TGCCAATTTTTCAAATGAGAGGTGGCAGCACGGTTAGA--CCTCTAATGCACCTAATGCCTTGACTGTTGGAACAGGTGA
AGAAAACAAAAATAAACCATGTGACTCGATCCATCATCTCAATTTGAAATCATATCCCATGCAGCCCAACTGAATTAAGA
TGCTCCCCACTCCATGCAACACACACCTTTCTCCTACTACCA------------------CTACACACTCGAGCTGCCCC
ACAAACCAAACCCTCTTCCACCTCCGTTAAAACCCTACACCACCACCCATTGTTCGCATCATCTAAC--------CATCG
CCATGGCCTCTTCTTACCTTGCGATCCTAGTGCTACTCTTGCTGCGGCTCTCCGGCGGCGCCGTCGCCGTCTCCTCCAGC
TACATCGCAAGGACCACGGAGCAGCAGATCATCGCCACCGTCGCACCGGCCGCCTTTGCCGACGCCGATGACGGCGGCCA
GAGCGCAGCGCAGCCTTTCCTCGCGTCCCCCTCCGGGTCGTTCGCCGCCTACCTCCGCCGCGCCGCCGTGGGCGATGGCG
GGAGCGGGGACGTGTGCTACGTCGAGGTTGTCCAGCAGCAGGGGGGCGGTGGCGGGACCAGCAGCGTGTGGGAGTCGGAG
TGCACGCCTGTGGGCGGCGCCGAGACCTGCGACCTGGCCTTCTCGCCGGTGGGGCTTGAGCTCTTCGCCGGCGGGCACTC
GCTGTGGGACACCGCTGTCGACTCCGACCCCGTGATGCTCAGCCTCGACGGCGCCGGCGACATGAGGATCGTCAGCAGGG
ACGGCGTCACGGTGTGGAGGACGAGGGACGAGCCGTGGACGGGGCGGAGGTGCGGCGCCGCGGCATTGCCGGTGTCGTCG
CCTTCGATGGAGGACGTGCTCCCGCCGCCGTCGGCCACTGGC------------ACGCCTCCAGCGGCGACGTCGACTCT
TGCTAGTCCGTGGGGCTCGGGCTTCACTTTCGGAGACCAAACGGCGCCACCAG---GTGACACGCCGCCTGACCAGATGC
TGCCGCCGCCACCGCCAGCTGACGACGACGACGACGATTCGGCCGACTTGCCTGACCTGCCGCTGCCACCGCCGCCTCCT
CCGTCTGACCCGTCAACGGACTGGCCGGACCTGCAGCTGCCTCCACCGCCGGCGGACATGCACCCGATCCCCGAGACGCC
GAACCAGCCTCTGTACTCGTCTCCACCGCCGGCGGACACGCACCCGATCCCCGAGACGCCGGACCAGCCTCTGTACTCGT
CGCCACCGCCAGGGGTCATGCACCCGATCCCCGAGTCACCGGACCAGCCTCTGCACTCGCCACCACCTCCAGCTCCTCCG
ACCCCCTTTGCCCCGCCCCAGACGCCATTGCCACCCGTCGACACGCCCCCGCTCGTGCCATCTCCCGGCGCGGGCATCGC
CACGCCACCAGCTTCATCGGACGACGACAACATGACATTCTCGCCACCGCCTCACGGCACGCCGCACCCGCGCCACCTTC
CACTTGGAGCCTCGCCGCCGACGGTGCCGGGGGCAGTGGCGCCGATCAGCGGCGGCCATGGCCCGCTCCCGTTCGG----
--GCAGGGGCAGGGGCAGCATGGGCAAGGGCAGGGGGTGTTCGGGCAGCAGCAGAACCAGCTGCTGAACGGCGGGGGGCA
GCGGCTGGAGGACAGCGCCGGCGGGTGGTCAGGCAGGGAGCGCGGCGGAGCGGCCGTGAGTTTGGCTTTGGCTGCTCTGG
TGGCTCTGGTTTTCGAGTAGTTTC--TCATTCTCGTTCGCAAGTTTGTATCACAC------CACATCC--------TGTA
ATTTTGTTTTTCCT----GGGTTGGGTTCGTTGAGGGGCCAA-GACACGTCCTTGTTGCTGAATTAGTTAGGGGTTTCTG
G-CAGCATGGCTGGTTTATTCATAGTATGCTTTGTGTTGATGT-----ATTCCATGTACCGGCAGTACGTTCTCTGGTGT
TTTCTATATTTTCTTTTAACAATTTTC-CTTTATC---------------------------------------------
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>chr5D_1
TGTAGAATGATGCAGCATAGTTTGAGAACTGAAGTGTTTCTACTTTGGATTTATGTAGCAACTAGCACGGCGATTTTCCT
AATGCGATATCCAAAGATCATCAGTGTTGTTGTCTGCAACGATTTCCCTTACTGAACTGTAGTAAA-CTGTACACCTGTA
AGCTCCTGAAAATTTTCGTGAAATCATTTGGTGCACTTGGACATGGAAGTTGCGCATCTTATTTTCGACGACCATGTTCC
GGTTAGTCCTCTCGGTGCTTTTGGCGCCTGCGCAGCGGGCCATGGAACGCTTCGCTATGGTGTTGTATTTT---------
---------------------------------------------CACTGTGAGGGACATGTGTGGTTGCATGCTGCATG
CTGT--------------TGAAGGACATTTTCGTGTAGTATCATACTTTTCCAATGCATATATGGTTCACACACAAGTTT
TTCCTGACCATGCATCACTCATGCCTGGGTAGGTTGTCACCAACAGTTTGACCGTCTGCTGACTGAAAG--------TAA
TACTCCCTCCGAATCACATTACTTGTTGCTGATTTAGAACAACTTCGTACGATTTAGTGCAACTTTATACACATTACTTG
TCGCCGATTTAGTAAAACTTTATATACGATTTAGTACAACTTTAGTATCATTGACAAGTTCTCTATTTTGGAACGGAGGG
AGTAATATGGATGATCGGAGGGAGTAGTTTCATTCTGATAGCAGAG--TAACACTACTAGCTGTATACTGAATTGTTCTG
TGTTAATTTTTCAAATGGGAGGTGGCAGCAAGGTTAGAGACCTCCAATGCACCTAATGCCCTAACTGTTGGAACAGGTGA
GCACACCCAAAAAATCCT-TCTGACTCGATCCATCATCTCAATTTGAAATCATATCCCAAGCTGGATTATGAA--TAAGA
TGCTCTCCACTCCATGCAACTCACACCTTTCTCCTACTACCA------------------CTCCACAAACTGAGCTCGC-
----ACCAAACCCTCTTCCACCTCCGTTAAAACCCTACACCACCCATCGCCATGCTCCTCACACCATCTCACCATCATCG
CCATGGCCTCCTCTTACCTTGCGATCCTAGTGCTGCTCTTGCTGCGCTTCTCCGGCGGCGCCGTCGCCGTCTCCTCCAGC
TACATCGCAAGGACCACCGAGCAGCAGATCATCGCCACCGTCGCGCCGGCCGCCTTCGCCGACGCCGATGACGGCGGCCA
GAGCGCAGCGCAGCCTTTCCTCGCGTCCCCCTCCGGGTCGTTCGCCGCGTACCTCCGCCGCGCCGCCGTGGGCGATGGCG
GTAGCGGGGACGTGTGCTACGTCGAGGTCGTCCAGCAGCAGGGGGGCGGCGGCGGGACCAGCAGCGTGTGGGAGTCGGAC
TGCACGCCGGTGGGCGGCGCCGAAACCTGCGACCTGGCCTTCTCGCCCGTGGGGCTCGAGCTGTTCGCCGGCGGGCACTC
GCTGTGGGACACCGCTGTCGACTCCGACCCCGCGATGCTCAGCCTCGACGGCGCCGGCGACATGAGGATCGTCAGCAGGG
ACGGCGTCACGGTGTGGAGGACGAGGGACGAGCCGTGGACAGGGCGGAGGTGCGGCGCCGCGGCCTTGCCGGTGTCGTCG
CCTTCGATGGAGGACGCGCTCCCCCCGCCGTCGGCCACCGGCGAGAAGCCCTTGACGCCTCCGGCGGCGGCGTCGACTCT
CGCCAGTCCGTGGGGCTCGGGCTTCACTTTCGGAGACCAAACGGCGCCTCCAG---CTGACACGTCGCCTGACCAGATGC
TGCCGCCGCCACCGCCAGCTGACGACGACGACGACGATTCGGCCGACTTGCCTGACCTGCCGCTACCACCGCCGCCTCCT
CCGTTTGACCCGTCAACGGACTGGCCGGACCTGCAGCTGCCTCCCCCGCCGGCGGACATGCACCCGATCCCCGAGACGCC
GGACCAGCCTCTGTACTCGTCGCCACCGCCGGCCGACATGCACCCGAACCCCGAGACGCCGGACCAGCCTCTGTACTCGT
CGCTACCGCCGGCGGACATGCACCCTATCCCCGAGTCGCCGGACCAGCCTCCGCACTCGTCACCACCTCCAGCTCCTCCG
ACCCCCTTTGTCCCGCCTCAGACGCCATCGCCACCCGTCGACACGCCCCCACTCGTGCCATCTCCCGGCGCGGGCATCGC
CACGCCACCAGCTTCATCGAGCGACGACAACATGTCATTCTCGCCACCACCTCACGGCACGCCGCACCCGCACCACCTTC
CCCTGGGAGCGTCGCCGCCGACGGTGCCGGGCGCGGTGGCGCCAATCAGCGGCGGCCATGGCCCGCTCCCGTTCGGACAG
GGGCAGGGGCAGGGGCAGCATGGGCAAGGGCAGGGGGTGTTCGGGCAGCAGCAGAACCAGCTGCTGAACGGCGGGGGGCA
GCCGCTGGAGCACAGCGCCGGCGGGTGGTCAGTTAGGGGGCGCGGCGGAGCGGCCGTGAGCTTGGCTTTGGTCGCTCTGG
TGGCTCTGGTTTTCGAGTAGTTTTTTTCATTCTCGTTCGCAAGTTTGTATCACAT------CACATCCCTCACTTGTGTA
ATTTTGC--TTTCT----GGGTTGGGTTCGTTCAGGGGCAAATGACATGTCCTTGTTGCTGAATTAGTTAGGGATTTCCG
GTCAGCATGGCTGGTTTATTCATGTTATGCTTTGTGTTGATGTGTTCCATCCCATGTATCGGCAGTATGT--TCTGGTGT
TTTCTATATTTTGTTTTAACAATTTTC-CTTTATCTATCCTTGATGCCTCCATTCACAGTGCGTTGCAACAAACCAAACA
ATGGCAGCCAATTTTTCAGTATGGCCTGT---------------------------------------------------
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>chrUn_2929
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---------------------------------------------------------------------------TCCTG
GGAGAGACACCCCTGAAATATCTTGGCTTACCTGTGTCCAACAAAAGAATAAGAAATAAAATGTGGAAAAGTGTAACTGA
GAAAATTGAGAAAAGATGTGCCTGTTGGCAGGGTAGACTACTAAATATTGCAGGTAGAGTCACTTTGGTGCAATCCTGCT
TATCCAATATTCCTATATACATGATGTCATTTTATCTTTTACCAGCTGGAGTTAG--AAAAAG-ATA-GATTTCTACAGA
GCCAGGATGGTATGGCAATCAGAAGAGGATAAAAAGAAGTACCACCTAGTGAACTGGAGAACCTGTTGCCTTCCAAAACA
GCAAGGGGGGCTGGGGATTACCAAAATTAAGATGTTTAACATTGCTTTGCTAGCTAAATGGTTATGGAAAATAGAGAACG
ATGAGGGATTTTGGCAGGGGATTATCAAAAAAAATTGTGTGGGGGACAAATGTCTCTCTGGAATTAAACAT-AAAGTGGG
GACTCCCAGTTTTGGTCTAATATCCTGGAAGTTAGAAAATACTTTTACCCACATATA---AAAAAATTGGGGGATGGAAA
AAATACTAGGTTTTGGGAAGATTGGTGGGTAGGGGATAAACCTCTTAAAGAGGCTTACCCTTCTTTATTCTTTATTAATA
ATGATCATGGGATAACGGTTAGAGATGCTATAGATAAAGGTTGGAGTGGTTTTACT
>chr2D_2931
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-----------------------------------------------------------------------------CTG
GGAGAGACACCCCTGAAATATCTTGGCTTACCTGTGTCCAACAAAAGAATTAGAAATAAAATGCGGAAAAATGTAACTGA
GAAAATTGAGAAAAGATGTGCCTGTTGGCAGGGTAGACTACTAAATATTGCAGGTAGAGTCACTTTGGTGTAGTCCTGCT
TATCCAATATTCCTATATACATGATGTCCTTTTATCTTTTACCAGCTGGAGTTAG--GAAAAAAATA-GATTTCTACAGA
TCCAGGATGGTATGGCAATCAGAAGAGGATAAAAGGAAGTACCACCTGGTGAACTGGAAAACTTGTTGTCTTCCAAAACA
GCAAGGGGGGCTGGGGATTACCAACATTGAGATGTTTAACATTGCTTTGATAGCTAAGTGGTTGTGGAAAATAGAGAACG
ATGAGGGTTTTTGGCAGGTATTATC-----AAAAAAATGCAGGGGACAATTGTCTCTCTGGAATCAAACATAAAAGTGGG
GACTCCCAGTTTTGGTCTAATATCTTGGAAGTTAGAAAATACTTCTACCCACATATTAAGAAAAAATTGGGGGATGAAAA
AAATACTAGGTTTT-GGAAGATTGGTGGGTAGGGGATAAACCTCTTAAAGAGGCTTACCCTTCTTTATTCTTTATTAGTA
ATGATCATGGGATAACAGTTAGAGATGCTGTTGATAAAGGTTGGAGTGGTTTTACT
>chr7D_2931
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-----------------------------------------------------------------------------CTG
GGGGAGACACCCCTGAAATATCTTGGCTTACCCGTGTCCAATAAAAGAATTAGAAATAAAATGTGGAAGAATGTAACTGA
GAAAATTAAGAAAAGATGTGCCTGTTGGTAGGGTAGACTGCTAAATATTGCAGGTTGAGTCACTTTGGTGCAGTCCTGCT
TATCCCATATTCCTATATACATGATGTCCTTTTATCTTTTACCAGCTGGAGTTAG--AAAAAAAGTA-GACTTTTACAGA
GCCAGGATGGTGTGGCAATCAGAAGAAGATAAGAGGAAGTACCACCTGGTGAACTGGAAAACTTGTTGTCTTCCAAAACA
GCTAGGGGGTCTAGGGATTACCAACATTGAAATGTTTAACATTGCTTTGTTAGCTAAGTGGTTGTGGAAAAAAGAGAACG
ATGAGGGTTTTTGGCAGGGTATTATCAAAGAAAAATATGTGGGGGACAAATGTCTCTCTGGAATCAAACACAAAACTGGG
GACTCCCAATTTTGGGCTAACATCTTGAAAGTTAGAAAATACTTCTACCCACATATTAAGAAAAAATTGGGGGATGGAAA
AAATACTAGGTTTCAGGAAGATTGGTGGGTAGGGGATAAACCTCTTAAAGAGGCTTACCCTTCTTTGTTCTTTATTAGTA
ATGATCATGGGATAACAGTTAGAGATGCTACTGATAAAGGTTGGAGTGGTTTTACT
>chr6D_2937
GAGACG--------------------------------------------------------------------------
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----------CCCTGAAATATCTTGGCTTACCCGTGTCCAATAAAAGAATCGGAAATAAAATGTGGAAGAATGTAACTGA
AAAAATGAT-AAAAGATGTGCCTGTTGGCAGGGTAGACTACTAAATATTGCATGTAGAGTCACTTTGGTGCAGTCCTGCT
TATCCAATATTCCTATATACATGATGTCCTTTTATCTTTTACCAGCTGGAGTTAG--GAAAAAAGTA-GACTTTTATAGA
GCCAGGATGGTGTGGCAATCAGAAGAAGATAAGAGGAAGTACCACCTGGTGAATTGGAAAACTTGCTGTCTTCCAAAACA
GCAAGGGGGTATGGGGATTACCAACATTGAAATGTTTAACATTGCTTTATTAGCTAAGTGGCTATGG-AAATAGAGAACG
ATGAGGGATTTTGGCAGGGGATCATCAAAGAAAAATATGTTGGGGACAAATGTCTCTCTGGAATCAAACACAAAAGTGGG
GATTCCCAGTTTTGGTCTAACATCTTGAAAGTTAGGAAATACTTCGACCCACATATTAAGAAAAAATTGGGGGATGGAAA
AAATACCAGGTTTTGGGAAGATTGGTGGGTAGGGGATAAACCTCTTAAAGAGGCCTACCCTTCTCTGTTCTTCATTAGTA
ATGATCATGGGATAACAGTTAGAGATGCTATTGATAAAGGATGGAGTGGTTTTACT
>chr1A_2937
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---GAGACACCCCTGAAATATCTTGGCCTACCTGTGTCCAATAAAAGAATCAAAAATAAAATGTGGAAAAATATAGCTAA
GAAAATTAAGAAAAGATGTGCCTGTTGGCAGGGTAGACTACTAAATATTGCAGGTAGAGTCACTTTGGTGCGGTCCTGCT
TATCCAATATTCCTATATACATGATGTCCTTTTATCTTTTACTAGATGGAATTAGAAAAAAAAAGTA-GACTTTTACAGA
GCCAGGATGATATGGCAATCAGAAGAAGATAAGAAGAAGTACCACCTGGTGAACTGGAAAACTTGTTGTCTTCCAAAACA
GCAAGGGGGTCTGGGGATTACCAACATTGAAATGTTTAACATTGCTTTATTAGTTAAGTGGCTGTGGAAAATAGAGAACG
ATGAGGGATTTTGGTAGGGGATTATTAAAGAAAAATATGTTGGGGACAATTGTCTCTCTAGAATCAAACACAAAAGTGGG
GATTCCCAGTTTTGGTCTAACATCTTGAAAGTTAGGAAATACTTCTACCCACATATTAAGAAAAAATTGGGGGATGGAAA
AAATACCAGGTTTTGGGAAGATTGGTGGGTAGGGGATAAACCTCCTAAAGAGGCTTACCCCTCTCTGTTCTTCATTAGTA
ATGATCATGGGATAACAGTTAGAGATGCTATTGATAAAGGCTGGAGTGGTTTTACT
>chr5B_2941
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-------CACCCCTGAAATATCTAGGCTTACCTGTATCTAATAAAAGAATAAGAAACAAAATGTAGAAAAATGTTACTGA
GAAAATTGAGAAAAGATGTGCCTGTTGGCAGGGTAGACTACTAAATATTGCAGGAAGAGTCACTTTGGTGCAATCCTTCT
TATCTAATATCCATATATACATGATGTCATTTTATCTACTGCCAGCTGGAGTTAGGAAAAAGG---TGGACTTTTACAGA
GCCAGGATGGTGTGGCAATCAAAAGAAGATAAAAGGAAATACCATCTGGTGAACTGGAAAACTTGATGTCTTCCAAAACA
GCAAGGGGGCCTGGGGATTACCAACATTGAAATGTTTAACATTGCTTTATTAGCTAAGTGGTTGTGGAAGTTAGAGAATG
ATGAGGGTTTTTGGCAGAGGATTATTAA--AAAAATATGTTGGGGATAAATGTCTCTCTGGAATTAAACACAAAAGTGGG
GATTCCCAGTTTTGGTTTGGCATCTTGAAAGTTAGGAAATACTTTTACCCACACATTAAGAAAAAATTGGGAGATGGTAG
AAACACCAGGTTTTGGGAAGATTGGTGGGTAGGGGATAAACCTCTCAAAGAGGCTTACCCTTCTTTGTTTTTCATTAGTA
ATGAGCATGAGATTACAGTTAGAGAAGCTATTGATAAATGATGGAGTGGTTTTAC-
>SNPs
------------------S------------------------S--------------------------S---------
------------------------------------------------------------------S-------------
--------------------S----------------------------SS-----------------------------
S-------------------------------------------------S-----------------------------
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---------------------------------------------------S----------------------------
-----------------------------------S------------------------------------S-------
--------S--SSS-SS-S--S----SSS-SSSSSSSSSSS-S-SS--SSSSSSSSS-SS--S-S-S-S-----SSS-SS
SSSSSSSS-SSS-S-SSSSSS----------------------------S--S-S---SSSSS-----S-S--S------
---------------------------------------------------S--------------S-----------S-
-------S---SS--S-----------------------------------S-----------S----------------
---------------S----------SS-SS--S--------------------------S-----S-----S-S-----
--------------------S--------------------SSSSSSSSSSSSSSSSSSS---------S------S---
----------------------------------------------------S---------------------------
----------------------S---------------------------------------S--------SS-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S----------------------------------------------------------S
--------------------------------------------------------------------------------
---------------------------------------------------------S--S-------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------SSS------------------------
----------------------------------------S-----------S--------------------------S
-S------------------------------S--------------S--------------S----S------------
---------------------------S----------------S--S--------------------------------
-------------S----S-------------------------------------------------------------
--------------------------------S------------------------S----------------------
----------------------------------S---------------------------------------------
--------SS--------------S-------------------------------------------------------
---------------------------------S----------------------------------------------
---------S----------------------------------------------S-----------------------
---------------S------------------S--S-----------------SSSSSS--S---S-------S----
-------S---S--SSSS----------------S----S----------------------------------------
------------------------------------------------S-------------------SS----------
--------------------S--S--SS--------------------SSSS--S------S------------------
-----------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-S--------------------------S---S--------------------S-------------S------------
------------------------------S-----SS-------S----------------------------------
-S---------------------------S--------------------------------------------------
----------------------------------------S-------------------------------S-------
------------------------------------S-------------------------------------------
-------------------------------------------------------------S---------S---S----
--------------------------------S-----------------------------------------------
-------------------------------------S----------S--------------------------S----
-------S-------------S---S------------S---S-------------
>forward_1018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------ACCCCACTACACACTGGAGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_3015
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TTGCCGATCTGGTTTCCTCC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
