Multiple sequence alignment - TraesCS5A01G321600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G321600 chr5A 100.000 4964 0 0 1 4964 534276451 534271488 0.000000e+00 9167.0
1 TraesCS5A01G321600 chr5A 98.113 53 1 0 1509 1561 534274881 534274829 5.290000e-15 93.5
2 TraesCS5A01G321600 chr5A 98.113 53 1 0 1571 1623 534274943 534274891 5.290000e-15 93.5
3 TraesCS5A01G321600 chr5D 91.734 1851 99 18 1874 3686 420921415 420919581 0.000000e+00 2521.0
4 TraesCS5A01G321600 chr5D 89.556 1800 133 33 1 1766 420923265 420921487 0.000000e+00 2231.0
5 TraesCS5A01G321600 chr5D 89.466 712 40 20 3717 4403 420919584 420918883 0.000000e+00 867.0
6 TraesCS5A01G321600 chr5D 91.045 402 25 6 4541 4940 420918846 420918454 2.630000e-147 532.0
7 TraesCS5A01G321600 chr5D 93.548 62 4 0 1502 1563 420921687 420921626 5.290000e-15 93.5
8 TraesCS5A01G321600 chr5D 93.333 45 1 2 4398 4441 221629741 221629698 1.150000e-06 65.8
9 TraesCS5A01G321600 chr5B 88.933 1997 120 45 2452 4403 507007736 507005796 0.000000e+00 2370.0
10 TraesCS5A01G321600 chr5B 89.633 762 53 11 818 1563 507009082 507008331 0.000000e+00 946.0
11 TraesCS5A01G321600 chr5B 92.795 458 32 1 1943 2400 507008198 507007742 0.000000e+00 662.0
12 TraesCS5A01G321600 chr5B 90.000 470 29 9 4479 4939 507005796 507005336 4.280000e-165 592.0
13 TraesCS5A01G321600 chr5B 88.945 199 21 1 1564 1761 507008392 507008194 1.380000e-60 244.0
14 TraesCS5A01G321600 chr1D 77.333 525 73 27 1 489 257509910 257509396 8.190000e-68 268.0
15 TraesCS5A01G321600 chr7D 80.110 362 55 13 1 356 622437078 622437428 2.290000e-63 254.0
16 TraesCS5A01G321600 chr7A 82.000 300 48 6 1 296 20733308 20733011 2.970000e-62 250.0
17 TraesCS5A01G321600 chr2B 77.612 402 69 18 5 396 14346214 14345824 1.800000e-54 224.0
18 TraesCS5A01G321600 chr2B 78.592 355 64 12 1 350 785903846 785904193 1.800000e-54 224.0
19 TraesCS5A01G321600 chr2B 86.842 76 4 5 4400 4474 733977161 733977231 4.120000e-11 80.5
20 TraesCS5A01G321600 chr2B 85.526 76 9 2 4400 4474 2119705 2119779 1.480000e-10 78.7
21 TraesCS5A01G321600 chr2B 83.750 80 9 3 4396 4474 15777985 15778061 6.890000e-09 73.1
22 TraesCS5A01G321600 chr3D 76.134 419 73 23 1 410 110530520 110530920 1.410000e-45 195.0
23 TraesCS5A01G321600 chr3D 75.703 391 74 18 1 379 582930980 582930599 5.110000e-40 176.0
24 TraesCS5A01G321600 chr3D 75.835 389 68 22 1 380 582910601 582910230 1.840000e-39 174.0
25 TraesCS5A01G321600 chr6D 92.727 55 2 2 4425 4478 232764477 232764530 1.480000e-10 78.7
26 TraesCS5A01G321600 chrUn 84.810 79 9 3 4398 4473 36524942 36525020 5.330000e-10 76.8
27 TraesCS5A01G321600 chrUn 84.810 79 9 3 4398 4473 36548926 36549004 5.330000e-10 76.8
28 TraesCS5A01G321600 chr2D 92.593 54 2 2 4425 4478 14815779 14815728 5.330000e-10 76.8
29 TraesCS5A01G321600 chr7B 87.500 64 5 3 4425 4486 605906238 605906300 2.480000e-08 71.3
30 TraesCS5A01G321600 chr6B 89.286 56 6 0 4431 4486 526103247 526103302 2.480000e-08 71.3
31 TraesCS5A01G321600 chr1B 100.000 35 0 0 4399 4433 645933524 645933558 1.150000e-06 65.8
32 TraesCS5A01G321600 chr2A 87.500 56 4 3 4395 4449 733868085 733868138 1.490000e-05 62.1
33 TraesCS5A01G321600 chr4A 87.234 47 4 2 4400 4445 499346331 499346286 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G321600 chr5A 534271488 534276451 4963 True 3118.0 9167 98.7420 1 4964 3 chr5A.!!$R1 4963
1 TraesCS5A01G321600 chr5D 420918454 420923265 4811 True 1248.9 2521 91.0698 1 4940 5 chr5D.!!$R2 4939
2 TraesCS5A01G321600 chr5B 507005336 507009082 3746 True 962.8 2370 90.0612 818 4939 5 chr5B.!!$R1 4121
3 TraesCS5A01G321600 chr1D 257509396 257509910 514 True 268.0 268 77.3330 1 489 1 chr1D.!!$R1 488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 671 0.246360 CCCGCTCACCCCAATTTTTC 59.754 55.0 0.00 0.0 0.00 2.29 F
1285 1345 0.036875 CCTATTGGGATTCCTCCGCC 59.963 60.0 2.01 0.0 43.11 6.13 F
1835 1941 0.101399 TGGACATTTTTGCGCGTGTT 59.899 45.0 8.43 0.0 0.00 3.32 F
1839 1945 0.111617 CATTTTTGCGCGTGTTGCTG 60.112 50.0 8.43 0.0 43.27 4.41 F
3282 3428 0.390340 TAGCAGTAGCACAGCACAGC 60.390 55.0 6.48 0.0 45.49 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 1922 0.101399 AACACGCGCAAAAATGTCCA 59.899 45.0 5.73 0.00 0.0 4.02 R
3167 3311 0.108898 AGCTCACAGAGTCATCGTGC 60.109 55.0 0.00 0.00 33.1 5.34 R
3435 3582 1.086696 CACTACCGGTTGCATTCCAG 58.913 55.0 15.04 3.26 0.0 3.86 R
3718 3880 1.222567 AGAAGACCCACCAAACCAGT 58.777 50.0 0.00 0.00 0.0 4.00 R
4782 4978 0.029834 GCATGCATGGATCCAACGAC 59.970 55.0 27.34 9.05 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.141835 ACCATGCATTTTAGAAAAAGTTCAAC 57.858 30.769 0.00 0.00 36.09 3.18
280 285 8.963130 ACGTGTATTACAAAATTGTTGTTGATG 58.037 29.630 3.85 0.00 42.35 3.07
458 498 1.522569 GCGCCTCCTCTGTAACCAT 59.477 57.895 0.00 0.00 0.00 3.55
477 517 4.755123 ACCATGAACGGAGAAAGTAACAAG 59.245 41.667 0.00 0.00 0.00 3.16
538 579 3.138798 GTAGTCCGCGCCTCCTCA 61.139 66.667 0.00 0.00 0.00 3.86
541 582 4.803426 GTCCGCGCCTCCTCAGTG 62.803 72.222 0.00 0.00 0.00 3.66
573 614 0.960364 ACAATTGTGCGGTGGCTAGG 60.960 55.000 11.07 0.00 40.82 3.02
584 625 4.615834 GGCTAGGAGCTCGTCGCG 62.616 72.222 21.93 0.00 45.59 5.87
586 627 3.578272 CTAGGAGCTCGTCGCGCT 61.578 66.667 13.10 9.93 45.59 5.92
606 647 1.588139 GGGAAGCGACGTGGTATCG 60.588 63.158 0.00 0.00 42.55 2.92
609 650 1.535437 GGAAGCGACGTGGTATCGAAT 60.535 52.381 0.00 0.00 42.25 3.34
610 651 2.190981 GAAGCGACGTGGTATCGAATT 58.809 47.619 0.00 0.00 42.25 2.17
614 655 1.484356 GACGTGGTATCGAATTCCCG 58.516 55.000 0.00 1.71 34.70 5.14
616 657 0.249322 CGTGGTATCGAATTCCCGCT 60.249 55.000 0.00 0.00 0.00 5.52
623 664 2.674754 GAATTCCCGCTCACCCCA 59.325 61.111 0.00 0.00 0.00 4.96
630 671 0.246360 CCCGCTCACCCCAATTTTTC 59.754 55.000 0.00 0.00 0.00 2.29
634 675 2.352715 CGCTCACCCCAATTTTTCCTTC 60.353 50.000 0.00 0.00 0.00 3.46
635 676 2.899900 GCTCACCCCAATTTTTCCTTCT 59.100 45.455 0.00 0.00 0.00 2.85
636 677 4.086457 GCTCACCCCAATTTTTCCTTCTA 58.914 43.478 0.00 0.00 0.00 2.10
637 678 4.526650 GCTCACCCCAATTTTTCCTTCTAA 59.473 41.667 0.00 0.00 0.00 2.10
665 706 8.791327 TTTCTATTCTTTGTATGTGCTGATGA 57.209 30.769 0.00 0.00 0.00 2.92
668 709 4.284829 TCTTTGTATGTGCTGATGACCA 57.715 40.909 0.00 0.00 0.00 4.02
718 759 2.925578 CATAATGTGCATATGGGCCG 57.074 50.000 4.56 0.00 0.00 6.13
719 760 1.473677 CATAATGTGCATATGGGCCGG 59.526 52.381 4.56 0.00 0.00 6.13
720 761 0.251121 TAATGTGCATATGGGCCGGG 60.251 55.000 2.18 0.00 0.00 5.73
740 781 1.659098 GCCGATTACTCCAGACGTTTG 59.341 52.381 0.00 0.00 0.00 2.93
744 785 2.060326 TTACTCCAGACGTTTGAGCG 57.940 50.000 7.81 0.00 37.94 5.03
752 793 1.337071 AGACGTTTGAGCGAGAGAACA 59.663 47.619 0.00 0.00 35.59 3.18
759 800 1.272781 GAGCGAGAGAACAATCCGTG 58.727 55.000 0.00 0.00 0.00 4.94
785 826 4.382040 GCTTAATGCGAGATATAGCTCCCA 60.382 45.833 12.27 9.97 0.00 4.37
786 827 5.683509 GCTTAATGCGAGATATAGCTCCCAT 60.684 44.000 11.48 11.48 35.51 4.00
788 829 1.827344 TGCGAGATATAGCTCCCATGG 59.173 52.381 12.27 4.14 0.00 3.66
800 841 4.242811 AGCTCCCATGGTCAAATAGGATA 58.757 43.478 11.73 0.00 0.00 2.59
803 848 6.012745 GCTCCCATGGTCAAATAGGATATTT 58.987 40.000 11.73 0.00 0.00 1.40
954 1002 4.214119 TCCTGCAATCTTGTCTCGAAAAAG 59.786 41.667 0.00 0.00 0.00 2.27
955 1003 4.470462 CTGCAATCTTGTCTCGAAAAAGG 58.530 43.478 0.00 0.00 0.00 3.11
980 1028 2.106166 AGATTAGGCCTCCTGCAATCTG 59.894 50.000 21.74 0.00 37.47 2.90
981 1029 0.548031 TTAGGCCTCCTGCAATCTGG 59.452 55.000 9.68 0.00 43.89 3.86
1138 1197 2.568062 TCCTCGTTGGGCATAAACTGTA 59.432 45.455 0.00 0.00 36.20 2.74
1144 1203 3.857157 TGGGCATAAACTGTAGGGATC 57.143 47.619 0.00 0.00 0.00 3.36
1146 1205 2.550208 GGGCATAAACTGTAGGGATCCG 60.550 54.545 5.45 0.00 0.00 4.18
1150 1209 0.822164 AAACTGTAGGGATCCGTCCG 59.178 55.000 10.94 3.28 46.09 4.79
1172 1232 0.876342 CCCAATCTAGGCGACGCTTC 60.876 60.000 20.77 3.61 0.00 3.86
1173 1233 0.179111 CCAATCTAGGCGACGCTTCA 60.179 55.000 20.77 2.65 0.00 3.02
1175 1235 0.818296 AATCTAGGCGACGCTTCACT 59.182 50.000 20.77 10.62 0.00 3.41
1180 1240 1.954146 GGCGACGCTTCACTGTCAA 60.954 57.895 20.77 0.00 34.78 3.18
1184 1244 2.156891 GCGACGCTTCACTGTCAATTTA 59.843 45.455 13.73 0.00 34.78 1.40
1196 1256 8.853077 TCACTGTCAATTTATTGTTGAGATCT 57.147 30.769 0.00 0.00 36.35 2.75
1262 1322 0.755698 ACGTAGAGCGACCCATCCAT 60.756 55.000 0.00 0.00 44.77 3.41
1265 1325 0.398522 TAGAGCGACCCATCCATGGT 60.399 55.000 12.58 0.00 46.65 3.55
1285 1345 0.036875 CCTATTGGGATTCCTCCGCC 59.963 60.000 2.01 0.00 43.11 6.13
1291 1351 2.203029 GATTCCTCCGCCCCGAAC 60.203 66.667 0.00 0.00 0.00 3.95
1310 1370 4.148645 GAAACGGAGGCTTCGCGC 62.149 66.667 16.70 0.00 38.13 6.86
1316 1376 4.430423 GAGGCTTCGCGCGTGTTG 62.430 66.667 30.98 18.13 40.44 3.33
1328 1388 3.977244 GTGTTGGCCCCAAGCACG 61.977 66.667 0.00 0.00 46.50 5.34
1376 1436 3.430929 GCACCAGGTAGTAAGATGTCAGG 60.431 52.174 0.00 0.00 0.00 3.86
1398 1458 4.401837 GGTAGAAAGGGAGTCGATGTAACT 59.598 45.833 0.00 0.00 0.00 2.24
1439 1499 4.037803 TGTTTTCCAATGGCATATCATCCG 59.962 41.667 0.00 0.00 0.00 4.18
1479 1539 6.317391 AGTGCAGAATTTAGAATAGCTGGAAC 59.683 38.462 0.00 0.00 0.00 3.62
1484 1546 7.168972 CAGAATTTAGAATAGCTGGAACGAGAG 59.831 40.741 0.00 0.00 0.00 3.20
1505 1567 2.480802 GGCTCTTTTCAAAGTCGAGGAC 59.519 50.000 0.00 0.00 37.31 3.85
1552 1614 2.289547 TGAAGTTTTCCTGCAAGCGTAC 59.710 45.455 0.00 0.00 0.00 3.67
1557 1619 2.772077 TTCCTGCAAGCGTACCATTA 57.228 45.000 0.00 0.00 0.00 1.90
1566 1628 3.261981 AGCGTACCATTAGTTCAAGGG 57.738 47.619 0.00 0.00 43.97 3.95
1721 1784 9.767228 TTTATCATAATCGTTCCCTCGAATTAA 57.233 29.630 0.00 0.00 42.99 1.40
1730 1793 7.555087 TCGTTCCCTCGAATTAACCTTTTATA 58.445 34.615 0.00 0.00 36.89 0.98
1755 1818 5.124457 TGTGATTCTTTTGGCTCTTAGATGC 59.876 40.000 0.00 0.00 0.00 3.91
1759 1822 5.633830 TCTTTTGGCTCTTAGATGCTTTG 57.366 39.130 4.31 0.00 0.00 2.77
1768 1874 7.779798 TGGCTCTTAGATGCTTTGGTATTAATT 59.220 33.333 0.00 0.00 0.00 1.40
1795 1901 6.096987 TCAATGAGTATGAACCTACCAGACTC 59.903 42.308 10.01 10.01 46.96 3.36
1796 1902 5.194473 TGAGTATGAACCTACCAGACTCT 57.806 43.478 15.76 0.00 46.92 3.24
1797 1903 4.950475 TGAGTATGAACCTACCAGACTCTG 59.050 45.833 15.76 0.00 46.92 3.35
1798 1904 3.702045 AGTATGAACCTACCAGACTCTGC 59.298 47.826 0.00 0.00 31.19 4.26
1799 1905 1.267121 TGAACCTACCAGACTCTGCC 58.733 55.000 0.00 0.00 0.00 4.85
1800 1906 1.203187 TGAACCTACCAGACTCTGCCT 60.203 52.381 0.00 0.00 0.00 4.75
1801 1907 2.042569 TGAACCTACCAGACTCTGCCTA 59.957 50.000 0.00 0.00 0.00 3.93
1802 1908 2.146920 ACCTACCAGACTCTGCCTAC 57.853 55.000 0.00 0.00 0.00 3.18
1803 1909 1.358103 ACCTACCAGACTCTGCCTACA 59.642 52.381 0.00 0.00 0.00 2.74
1804 1910 1.751924 CCTACCAGACTCTGCCTACAC 59.248 57.143 0.00 0.00 0.00 2.90
1805 1911 1.402259 CTACCAGACTCTGCCTACACG 59.598 57.143 0.00 0.00 0.00 4.49
1806 1912 1.251527 ACCAGACTCTGCCTACACGG 61.252 60.000 0.00 0.00 0.00 4.94
1807 1913 0.965866 CCAGACTCTGCCTACACGGA 60.966 60.000 0.00 0.00 33.16 4.69
1808 1914 1.107114 CAGACTCTGCCTACACGGAT 58.893 55.000 0.00 0.00 33.16 4.18
1809 1915 1.066303 CAGACTCTGCCTACACGGATC 59.934 57.143 0.00 0.00 33.16 3.36
1810 1916 1.103803 GACTCTGCCTACACGGATCA 58.896 55.000 0.00 0.00 33.16 2.92
1811 1917 0.818296 ACTCTGCCTACACGGATCAC 59.182 55.000 0.00 0.00 33.16 3.06
1822 1928 3.686622 CGGATCACGGAATGGACAT 57.313 52.632 0.00 0.00 39.42 3.06
1823 1929 1.953559 CGGATCACGGAATGGACATT 58.046 50.000 0.00 0.00 39.42 2.71
1824 1930 2.288666 CGGATCACGGAATGGACATTT 58.711 47.619 0.00 0.00 39.42 2.32
1825 1931 2.682856 CGGATCACGGAATGGACATTTT 59.317 45.455 0.00 0.00 39.42 1.82
1826 1932 3.128589 CGGATCACGGAATGGACATTTTT 59.871 43.478 0.00 0.00 39.42 1.94
1827 1933 4.423732 GGATCACGGAATGGACATTTTTG 58.576 43.478 0.00 0.00 0.00 2.44
1828 1934 3.296322 TCACGGAATGGACATTTTTGC 57.704 42.857 0.00 0.00 0.00 3.68
1829 1935 1.984990 CACGGAATGGACATTTTTGCG 59.015 47.619 0.00 0.00 39.62 4.85
1830 1936 0.991344 CGGAATGGACATTTTTGCGC 59.009 50.000 0.00 0.00 0.00 6.09
1831 1937 0.991344 GGAATGGACATTTTTGCGCG 59.009 50.000 0.00 0.00 0.00 6.86
1832 1938 1.668628 GGAATGGACATTTTTGCGCGT 60.669 47.619 8.43 0.00 0.00 6.01
1833 1939 1.386412 GAATGGACATTTTTGCGCGTG 59.614 47.619 8.43 0.00 0.00 5.34
1834 1940 0.313672 ATGGACATTTTTGCGCGTGT 59.686 45.000 8.43 1.94 0.00 4.49
1835 1941 0.101399 TGGACATTTTTGCGCGTGTT 59.899 45.000 8.43 0.00 0.00 3.32
1836 1942 0.502275 GGACATTTTTGCGCGTGTTG 59.498 50.000 8.43 0.00 0.00 3.33
1837 1943 0.111748 GACATTTTTGCGCGTGTTGC 60.112 50.000 8.43 0.00 41.47 4.17
1838 1944 0.527385 ACATTTTTGCGCGTGTTGCT 60.527 45.000 8.43 0.00 43.27 3.91
1839 1945 0.111617 CATTTTTGCGCGTGTTGCTG 60.112 50.000 8.43 0.00 43.27 4.41
1840 1946 1.214373 ATTTTTGCGCGTGTTGCTGG 61.214 50.000 8.43 0.00 43.27 4.85
1841 1947 3.764810 TTTTGCGCGTGTTGCTGGG 62.765 57.895 8.43 0.00 43.27 4.45
1865 1971 7.262772 GGGGGTTAATAACTAACAATCTTTGC 58.737 38.462 2.96 0.00 41.60 3.68
1866 1972 7.093684 GGGGGTTAATAACTAACAATCTTTGCA 60.094 37.037 2.96 0.00 41.60 4.08
1867 1973 8.474831 GGGGTTAATAACTAACAATCTTTGCAT 58.525 33.333 2.96 0.00 41.60 3.96
1868 1974 9.301153 GGGTTAATAACTAACAATCTTTGCATG 57.699 33.333 2.96 0.00 41.60 4.06
1878 1984 9.350357 CTAACAATCTTTGCATGATATTATGGC 57.650 33.333 9.33 3.05 0.00 4.40
1887 1993 4.796830 GCATGATATTATGGCGCAAATCAG 59.203 41.667 10.83 0.05 0.00 2.90
1899 2005 3.814945 CGCAAATCAGTTGGTCTTTCTC 58.185 45.455 0.00 0.00 37.73 2.87
1901 2007 4.083110 CGCAAATCAGTTGGTCTTTCTCAT 60.083 41.667 0.00 0.00 37.73 2.90
1923 2038 6.945435 TCATAAGAGTTGGCCAAAAGTTGATA 59.055 34.615 22.47 7.80 0.00 2.15
1935 2050 3.659183 AAGTTGATAATCTGCTGGCCT 57.341 42.857 3.32 0.00 0.00 5.19
1991 2106 7.031226 TGCCTTTGTATTGCATTCTTATCTC 57.969 36.000 0.00 0.00 0.00 2.75
2036 2151 7.907389 ACTTTGGATGTCTTGTAGATGTAGAA 58.093 34.615 0.00 0.00 0.00 2.10
2041 2156 6.531948 GGATGTCTTGTAGATGTAGAACACAC 59.468 42.308 0.00 0.00 40.86 3.82
2075 2190 4.079253 TCCTTGTTAGGTTCTTTCCATGC 58.921 43.478 0.00 0.00 42.60 4.06
2132 2247 4.867086 TGACTAGGATCCACATACAGACA 58.133 43.478 15.82 4.81 0.00 3.41
2154 2269 8.258007 AGACAGTTTATATGGATTCGAAACAGA 58.742 33.333 0.00 2.18 33.42 3.41
2161 2276 5.824904 ATGGATTCGAAACAGAGAAATGG 57.175 39.130 0.00 0.00 0.00 3.16
2169 2287 7.361457 TCGAAACAGAGAAATGGTAGGATAT 57.639 36.000 0.00 0.00 0.00 1.63
2269 2387 4.526650 ACATTCCACCCAAAACTATGAACC 59.473 41.667 0.00 0.00 0.00 3.62
2347 2465 1.606606 GCGCATTTGTTTCTCCTTCG 58.393 50.000 0.30 0.00 0.00 3.79
2425 2543 6.502074 ACCTTTTTGGGCCTTAAACATTTA 57.498 33.333 4.53 0.00 41.11 1.40
2456 2574 4.804868 ATTGTGCATGGTAAGATTTGCA 57.195 36.364 0.00 0.00 42.41 4.08
2593 2718 5.667172 TGGGATGATAGAACCTGATTGAGAA 59.333 40.000 0.00 0.00 0.00 2.87
2599 2724 6.372659 TGATAGAACCTGATTGAGAAGTTTGC 59.627 38.462 0.00 0.00 0.00 3.68
2634 2759 4.074970 CAGAGGTGGTGCACTAAGAAATT 58.925 43.478 17.98 0.00 34.40 1.82
2777 2919 6.176183 CCATCAGGTAAATCTTCTGTTCACT 58.824 40.000 0.00 0.00 0.00 3.41
2827 2971 4.772100 GGGAATGGGTCTCAGAAATGAAAA 59.228 41.667 0.00 0.00 0.00 2.29
2888 3032 2.771089 CTAAGTCAGCTTCTTGCACCA 58.229 47.619 10.19 0.00 45.94 4.17
3003 3147 5.010282 ACTATTTGCCAGTCCAAAAGTAGG 58.990 41.667 0.00 0.00 38.12 3.18
3066 3210 8.981647 CCAATTATGTGTTTTTCTTTTCTCCTG 58.018 33.333 0.00 0.00 0.00 3.86
3106 3250 6.052360 ACACTTCCGCCATTTGTTTTTATTT 58.948 32.000 0.00 0.00 0.00 1.40
3110 3254 9.278978 ACTTCCGCCATTTGTTTTTATTTAATT 57.721 25.926 0.00 0.00 0.00 1.40
3167 3311 8.692110 ACATGCTTATACATTGTTTGATTGTG 57.308 30.769 0.00 0.00 0.00 3.33
3172 3316 3.706802 ACATTGTTTGATTGTGCACGA 57.293 38.095 9.77 9.77 0.00 4.35
3176 3320 3.266541 TGTTTGATTGTGCACGATGAC 57.733 42.857 24.47 18.04 0.00 3.06
3189 3333 2.411069 CACGATGACTCTGTGAGCTTTG 59.589 50.000 0.00 0.00 35.66 2.77
3209 3353 5.722021 TTGAGGATTAGCCAAAAAGTTCC 57.278 39.130 0.00 0.00 40.02 3.62
3211 3355 5.010282 TGAGGATTAGCCAAAAAGTTCCTC 58.990 41.667 8.73 8.73 45.15 3.71
3221 3367 3.884037 AAAAGTTCCTCTGGTGATGGT 57.116 42.857 0.00 0.00 0.00 3.55
3223 3369 3.425162 AAGTTCCTCTGGTGATGGTTC 57.575 47.619 0.00 0.00 0.00 3.62
3238 3384 6.294010 GGTGATGGTTCTACAAAAGAAGGTTC 60.294 42.308 0.00 0.00 44.94 3.62
3239 3385 6.262273 GTGATGGTTCTACAAAAGAAGGTTCA 59.738 38.462 0.00 0.00 44.94 3.18
3256 3402 7.936847 AGAAGGTTCATTATGTGTGAGTTGTAA 59.063 33.333 0.00 0.00 0.00 2.41
3280 3426 3.820595 CTAGCAGTAGCACAGCACA 57.179 52.632 6.48 0.00 45.49 4.57
3281 3427 1.638133 CTAGCAGTAGCACAGCACAG 58.362 55.000 6.48 0.95 45.49 3.66
3282 3428 0.390340 TAGCAGTAGCACAGCACAGC 60.390 55.000 6.48 0.00 45.49 4.40
3288 3434 0.886043 TAGCACAGCACAGCACAAGG 60.886 55.000 0.00 0.00 0.00 3.61
3400 3547 1.833787 TTGGGGGTACGCTTCCAGAC 61.834 60.000 10.04 0.00 42.66 3.51
3435 3582 7.118390 CCATGATTACTTTACTCGGATGAATCC 59.882 40.741 0.00 0.00 43.65 3.01
3508 3655 6.346040 GCAACATCAACATTAACTTTGCTGTC 60.346 38.462 7.47 0.00 32.36 3.51
3524 3671 2.485814 GCTGTCAAGCCTTTCCTGTTAG 59.514 50.000 0.00 0.00 44.22 2.34
3546 3693 3.427503 GGTTATCAATGCGTTCCTTGTGG 60.428 47.826 0.00 0.00 0.00 4.17
3559 3706 1.308998 CTTGTGGTTGACAGGGACAC 58.691 55.000 0.00 0.00 35.44 3.67
3637 3784 9.741647 GTAGTGTGTTAGTTAGTTTACTGTTCT 57.258 33.333 0.00 0.00 0.00 3.01
3686 3848 4.462483 GCTGAACCAATTGGAAGGATAACA 59.538 41.667 31.22 15.16 38.94 2.41
3687 3849 5.047377 GCTGAACCAATTGGAAGGATAACAA 60.047 40.000 31.22 3.51 38.94 2.83
3688 3850 6.351286 GCTGAACCAATTGGAAGGATAACAAT 60.351 38.462 31.22 0.27 38.94 2.71
3689 3851 7.169158 TGAACCAATTGGAAGGATAACAATC 57.831 36.000 31.22 10.56 38.94 2.67
3690 3852 5.835113 ACCAATTGGAAGGATAACAATCG 57.165 39.130 31.22 0.00 38.94 3.34
3691 3853 4.097892 ACCAATTGGAAGGATAACAATCGC 59.902 41.667 31.22 0.00 38.94 4.58
3692 3854 4.097741 CCAATTGGAAGGATAACAATCGCA 59.902 41.667 20.50 0.00 34.00 5.10
3693 3855 4.900635 ATTGGAAGGATAACAATCGCAC 57.099 40.909 0.00 0.00 29.38 5.34
3694 3856 2.639065 TGGAAGGATAACAATCGCACC 58.361 47.619 0.00 0.00 0.00 5.01
3695 3857 2.238646 TGGAAGGATAACAATCGCACCT 59.761 45.455 0.00 0.00 0.00 4.00
3696 3858 2.614057 GGAAGGATAACAATCGCACCTG 59.386 50.000 0.00 0.00 0.00 4.00
3697 3859 1.668419 AGGATAACAATCGCACCTGC 58.332 50.000 0.00 0.00 37.78 4.85
3698 3860 1.210478 AGGATAACAATCGCACCTGCT 59.790 47.619 0.00 0.00 39.32 4.24
3699 3861 2.434336 AGGATAACAATCGCACCTGCTA 59.566 45.455 0.00 0.00 39.32 3.49
3700 3862 3.071602 AGGATAACAATCGCACCTGCTAT 59.928 43.478 0.00 0.00 39.32 2.97
3701 3863 4.283467 AGGATAACAATCGCACCTGCTATA 59.717 41.667 0.00 0.00 39.32 1.31
3702 3864 5.046304 AGGATAACAATCGCACCTGCTATAT 60.046 40.000 0.00 0.00 39.32 0.86
3703 3865 6.154534 AGGATAACAATCGCACCTGCTATATA 59.845 38.462 0.00 0.00 39.32 0.86
3704 3866 6.986817 GGATAACAATCGCACCTGCTATATAT 59.013 38.462 0.00 0.00 39.32 0.86
3705 3867 7.042456 GGATAACAATCGCACCTGCTATATATG 60.042 40.741 0.00 0.00 39.32 1.78
3706 3868 5.152623 ACAATCGCACCTGCTATATATGT 57.847 39.130 0.00 0.00 39.32 2.29
3707 3869 5.551233 ACAATCGCACCTGCTATATATGTT 58.449 37.500 0.00 0.00 39.32 2.71
3708 3870 5.639506 ACAATCGCACCTGCTATATATGTTC 59.360 40.000 0.00 0.00 39.32 3.18
3709 3871 5.667539 ATCGCACCTGCTATATATGTTCT 57.332 39.130 0.00 0.00 39.32 3.01
3710 3872 4.809673 TCGCACCTGCTATATATGTTCTG 58.190 43.478 0.00 0.00 39.32 3.02
3711 3873 4.522789 TCGCACCTGCTATATATGTTCTGA 59.477 41.667 0.00 0.00 39.32 3.27
3712 3874 5.185828 TCGCACCTGCTATATATGTTCTGAT 59.814 40.000 0.00 0.00 39.32 2.90
3713 3875 6.377146 TCGCACCTGCTATATATGTTCTGATA 59.623 38.462 0.00 0.00 39.32 2.15
3714 3876 6.694844 CGCACCTGCTATATATGTTCTGATAG 59.305 42.308 0.00 0.00 39.32 2.08
3715 3877 7.551585 GCACCTGCTATATATGTTCTGATAGT 58.448 38.462 0.00 0.00 38.21 2.12
3716 3878 8.037758 GCACCTGCTATATATGTTCTGATAGTT 58.962 37.037 0.00 0.00 38.21 2.24
3762 3924 6.643388 AGAATGGCCAATTTAAAAAGGCTAG 58.357 36.000 24.72 0.00 46.23 3.42
3765 3927 4.040952 TGGCCAATTTAAAAAGGCTAGCAA 59.959 37.500 24.72 0.00 46.23 3.91
3766 3928 5.185454 GGCCAATTTAAAAAGGCTAGCAAT 58.815 37.500 24.72 2.57 46.23 3.56
3793 3955 6.183360 GCACATGCTATATATGTTCTCGTTCC 60.183 42.308 0.00 0.00 36.67 3.62
3796 3958 5.779922 TGCTATATATGTTCTCGTTCCACC 58.220 41.667 0.00 0.00 0.00 4.61
3801 3963 1.961793 TGTTCTCGTTCCACCTTTGG 58.038 50.000 0.00 0.00 45.56 3.28
3807 3970 1.071071 TCGTTCCACCTTTGGTCGAAT 59.929 47.619 0.60 0.00 44.35 3.34
3818 3981 5.704053 ACCTTTGGTCGAATTTTTCTCGTAT 59.296 36.000 0.00 0.00 37.56 3.06
3878 4041 0.465705 TGACCATCCGCTCCAATCTC 59.534 55.000 0.00 0.00 0.00 2.75
3985 4152 0.179189 GACCATGAAAGAAAGCGCCG 60.179 55.000 2.29 0.00 0.00 6.46
4031 4198 4.159506 TCATCATATATCCGCATCCGTGAA 59.840 41.667 0.00 0.00 0.00 3.18
4057 4224 4.514401 GTCGTCTTGGTCCAATAATCCTT 58.486 43.478 4.34 0.00 0.00 3.36
4058 4225 4.332819 GTCGTCTTGGTCCAATAATCCTTG 59.667 45.833 4.34 0.00 0.00 3.61
4110 4277 4.202253 TGGTGTCCTCATCGAATCCAATAG 60.202 45.833 0.00 0.00 0.00 1.73
4113 4280 4.895889 TGTCCTCATCGAATCCAATAGTCT 59.104 41.667 0.00 0.00 0.00 3.24
4117 4284 5.049818 CCTCATCGAATCCAATAGTCTTTGC 60.050 44.000 0.00 0.00 0.00 3.68
4170 4337 2.176792 CTTCGCTTTCCGGCTTGC 59.823 61.111 0.00 0.00 37.59 4.01
4205 4372 3.765026 ACGTTGTCTTCGCAACAATTTT 58.235 36.364 9.20 0.00 46.47 1.82
4206 4373 4.170256 ACGTTGTCTTCGCAACAATTTTT 58.830 34.783 9.20 0.00 46.47 1.94
4324 4508 2.489329 CACTTGGCTGTTTGGATACTGG 59.511 50.000 0.00 0.00 37.61 4.00
4325 4509 2.094675 CTTGGCTGTTTGGATACTGGG 58.905 52.381 0.00 0.00 37.61 4.45
4326 4510 0.323360 TGGCTGTTTGGATACTGGGC 60.323 55.000 0.00 0.00 37.61 5.36
4327 4511 0.323360 GGCTGTTTGGATACTGGGCA 60.323 55.000 0.00 0.00 37.61 5.36
4328 4512 1.098050 GCTGTTTGGATACTGGGCAG 58.902 55.000 0.00 0.00 37.61 4.85
4330 4514 2.086869 CTGTTTGGATACTGGGCAGTG 58.913 52.381 0.00 0.00 42.52 3.66
4339 4526 4.947388 GGATACTGGGCAGTGATGTTTTTA 59.053 41.667 0.00 0.00 42.52 1.52
4360 4547 8.723942 TTTTATTTCTGGAGAGCTTCAGTATC 57.276 34.615 5.73 0.00 33.13 2.24
4392 4579 7.947890 TGGGATTTATAAACTCAAACTCTTGGT 59.052 33.333 0.00 0.00 33.01 3.67
4401 4588 8.828688 AAACTCAAACTCTTGGTATACAGTAC 57.171 34.615 5.01 0.00 33.01 2.73
4402 4589 7.778185 ACTCAAACTCTTGGTATACAGTACT 57.222 36.000 5.01 0.00 33.01 2.73
4403 4590 7.828712 ACTCAAACTCTTGGTATACAGTACTC 58.171 38.462 5.01 0.00 33.01 2.59
4404 4591 7.093858 ACTCAAACTCTTGGTATACAGTACTCC 60.094 40.741 5.01 0.00 33.01 3.85
4405 4592 6.154021 TCAAACTCTTGGTATACAGTACTCCC 59.846 42.308 5.01 0.00 33.01 4.30
4406 4593 5.469210 ACTCTTGGTATACAGTACTCCCT 57.531 43.478 5.01 0.00 0.00 4.20
4407 4594 5.447757 ACTCTTGGTATACAGTACTCCCTC 58.552 45.833 5.01 0.00 0.00 4.30
4408 4595 4.801164 TCTTGGTATACAGTACTCCCTCC 58.199 47.826 5.01 0.00 0.00 4.30
4409 4596 3.219176 TGGTATACAGTACTCCCTCCG 57.781 52.381 5.01 0.00 0.00 4.63
4410 4597 2.511218 TGGTATACAGTACTCCCTCCGT 59.489 50.000 5.01 0.00 0.00 4.69
4411 4598 3.053395 TGGTATACAGTACTCCCTCCGTT 60.053 47.826 5.01 0.00 0.00 4.44
4412 4599 3.567585 GGTATACAGTACTCCCTCCGTTC 59.432 52.174 5.01 0.00 0.00 3.95
4413 4600 3.666345 ATACAGTACTCCCTCCGTTCT 57.334 47.619 0.00 0.00 0.00 3.01
4414 4601 4.785346 ATACAGTACTCCCTCCGTTCTA 57.215 45.455 0.00 0.00 0.00 2.10
4415 4602 3.446442 ACAGTACTCCCTCCGTTCTAA 57.554 47.619 0.00 0.00 0.00 2.10
4416 4603 3.771216 ACAGTACTCCCTCCGTTCTAAA 58.229 45.455 0.00 0.00 0.00 1.85
4417 4604 4.154942 ACAGTACTCCCTCCGTTCTAAAA 58.845 43.478 0.00 0.00 0.00 1.52
4418 4605 4.776308 ACAGTACTCCCTCCGTTCTAAAAT 59.224 41.667 0.00 0.00 0.00 1.82
4419 4606 5.954150 ACAGTACTCCCTCCGTTCTAAAATA 59.046 40.000 0.00 0.00 0.00 1.40
4420 4607 6.438425 ACAGTACTCCCTCCGTTCTAAAATAA 59.562 38.462 0.00 0.00 0.00 1.40
4421 4608 7.038799 ACAGTACTCCCTCCGTTCTAAAATAAA 60.039 37.037 0.00 0.00 0.00 1.40
4422 4609 7.985752 CAGTACTCCCTCCGTTCTAAAATAAAT 59.014 37.037 0.00 0.00 0.00 1.40
4423 4610 7.985752 AGTACTCCCTCCGTTCTAAAATAAATG 59.014 37.037 0.00 0.00 0.00 2.32
4424 4611 6.954232 ACTCCCTCCGTTCTAAAATAAATGA 58.046 36.000 0.00 0.00 0.00 2.57
4425 4612 6.822170 ACTCCCTCCGTTCTAAAATAAATGAC 59.178 38.462 0.00 0.00 0.00 3.06
4426 4613 6.954232 TCCCTCCGTTCTAAAATAAATGACT 58.046 36.000 0.00 0.00 0.00 3.41
4427 4614 7.046033 TCCCTCCGTTCTAAAATAAATGACTC 58.954 38.462 0.00 0.00 0.00 3.36
4428 4615 6.821665 CCCTCCGTTCTAAAATAAATGACTCA 59.178 38.462 0.00 0.00 0.00 3.41
4429 4616 7.335924 CCCTCCGTTCTAAAATAAATGACTCAA 59.664 37.037 0.00 0.00 0.00 3.02
4430 4617 8.726988 CCTCCGTTCTAAAATAAATGACTCAAA 58.273 33.333 0.00 0.00 0.00 2.69
4521 4708 4.160252 CCCAACAACCATATCAAGAAAGGG 59.840 45.833 0.00 0.00 0.00 3.95
4526 4713 6.993079 ACAACCATATCAAGAAAGGGAAAAC 58.007 36.000 0.00 0.00 0.00 2.43
4544 4732 0.184933 ACAAACAGGCCCTGCTAACA 59.815 50.000 11.63 0.00 34.37 2.41
4577 4765 1.812571 CCTGGAATTGGTCGGAACTTG 59.187 52.381 0.00 0.00 0.00 3.16
4623 4811 3.314635 CCAGCAGCCAAGACTTCATATTC 59.685 47.826 0.00 0.00 0.00 1.75
4635 4823 9.959749 CAAGACTTCATATTCTTCTAGGAGTAC 57.040 37.037 0.00 0.00 29.23 2.73
4638 4828 8.472007 ACTTCATATTCTTCTAGGAGTACCAG 57.528 38.462 0.00 0.00 38.94 4.00
4653 4843 2.225068 ACCAGAATCTAACCGCATCG 57.775 50.000 0.00 0.00 0.00 3.84
4687 4883 2.857152 TCTGATTTGTTTGTTGCGTTGC 59.143 40.909 0.00 0.00 0.00 4.17
4689 4885 1.849219 GATTTGTTTGTTGCGTTGCGA 59.151 42.857 0.00 0.00 0.00 5.10
4746 4942 1.440145 GGCGGAGGATAAGCAAGCAC 61.440 60.000 0.00 0.00 0.00 4.40
4747 4943 1.766143 GCGGAGGATAAGCAAGCACG 61.766 60.000 0.00 0.00 0.00 5.34
4766 4962 5.034797 GCACGGCCTTTTTAGAATGATTAC 58.965 41.667 0.00 0.00 0.00 1.89
4802 4998 0.394080 TCGTTGGATCCATGCATGCA 60.394 50.000 25.04 25.04 0.00 3.96
4806 5002 0.541063 TGGATCCATGCATGCATCCC 60.541 55.000 36.11 24.95 33.90 3.85
4813 5009 3.520862 GCATGCATCCCACGGTGG 61.521 66.667 20.41 20.41 37.25 4.61
4901 5097 2.808206 AAGTCGCCGGGATCCATCC 61.808 63.158 15.23 0.00 46.41 3.51
4926 5122 1.303309 CGGTGCTCATCCAAAGATCC 58.697 55.000 0.00 0.00 0.00 3.36
4928 5124 2.747467 CGGTGCTCATCCAAAGATCCAT 60.747 50.000 0.00 0.00 0.00 3.41
4930 5126 3.548770 GTGCTCATCCAAAGATCCATGA 58.451 45.455 0.00 0.00 0.00 3.07
4939 5135 9.204337 TCATCCAAAGATCCATGATGTATTTTT 57.796 29.630 0.00 0.00 35.47 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
458 498 8.665643 TTATTTCTTGTTACTTTCTCCGTTCA 57.334 30.769 0.00 0.00 0.00 3.18
512 553 0.525029 GCGCGGACTACTTGAGGTAC 60.525 60.000 8.83 0.00 0.00 3.34
541 582 3.414549 ACAATTGTTGTGTTCGTGGAC 57.585 42.857 4.92 0.00 43.48 4.02
564 605 2.809010 GACGAGCTCCTAGCCACC 59.191 66.667 8.47 0.00 43.77 4.61
566 607 3.518998 GCGACGAGCTCCTAGCCA 61.519 66.667 8.47 0.00 43.77 4.75
567 608 4.615834 CGCGACGAGCTCCTAGCC 62.616 72.222 8.47 0.00 43.77 3.93
586 627 1.952102 GATACCACGTCGCTTCCCCA 61.952 60.000 0.00 0.00 0.00 4.96
588 629 1.588139 CGATACCACGTCGCTTCCC 60.588 63.158 0.00 0.00 31.85 3.97
592 633 1.535437 GGAATTCGATACCACGTCGCT 60.535 52.381 0.00 0.00 38.88 4.93
596 637 0.529119 GCGGGAATTCGATACCACGT 60.529 55.000 0.00 0.00 34.70 4.49
598 639 1.202486 TGAGCGGGAATTCGATACCAC 60.202 52.381 0.00 0.00 0.00 4.16
606 647 0.395724 ATTGGGGTGAGCGGGAATTC 60.396 55.000 0.00 0.00 0.00 2.17
609 650 0.178947 AAAATTGGGGTGAGCGGGAA 60.179 50.000 0.00 0.00 0.00 3.97
610 651 0.178947 AAAAATTGGGGTGAGCGGGA 60.179 50.000 0.00 0.00 0.00 5.14
614 655 2.899900 AGAAGGAAAAATTGGGGTGAGC 59.100 45.455 0.00 0.00 0.00 4.26
616 657 7.625498 AAATTAGAAGGAAAAATTGGGGTGA 57.375 32.000 0.00 0.00 0.00 4.02
661 702 6.749923 AGAAAAATTAGCAGTCTGGTCATC 57.250 37.500 8.05 0.03 0.00 2.92
665 706 8.870075 AAGAATAGAAAAATTAGCAGTCTGGT 57.130 30.769 9.90 9.90 0.00 4.00
700 741 1.616725 CCCGGCCCATATGCACATTAT 60.617 52.381 0.00 0.00 0.00 1.28
704 745 4.892965 GCCCGGCCCATATGCACA 62.893 66.667 0.00 0.00 0.00 4.57
714 755 4.620937 GGAGTAATCGGCCCGGCC 62.621 72.222 19.64 19.64 46.75 6.13
715 756 3.809374 CTGGAGTAATCGGCCCGGC 62.809 68.421 1.90 0.00 0.00 6.13
716 757 2.131709 TCTGGAGTAATCGGCCCGG 61.132 63.158 1.90 0.00 0.00 5.73
717 758 1.067582 GTCTGGAGTAATCGGCCCG 59.932 63.158 0.00 0.00 0.00 6.13
718 759 1.067582 CGTCTGGAGTAATCGGCCC 59.932 63.158 0.00 0.00 0.00 5.80
719 760 0.175073 AACGTCTGGAGTAATCGGCC 59.825 55.000 0.00 0.00 0.00 6.13
720 761 1.659098 CAAACGTCTGGAGTAATCGGC 59.341 52.381 0.00 0.00 0.00 5.54
740 781 1.272781 CACGGATTGTTCTCTCGCTC 58.727 55.000 0.00 0.00 0.00 5.03
744 785 0.992802 GCGACACGGATTGTTCTCTC 59.007 55.000 0.00 0.00 39.17 3.20
785 826 7.654287 AGAGGGAAATATCCTATTTGACCAT 57.346 36.000 10.27 0.00 45.77 3.55
786 827 7.465900 AAGAGGGAAATATCCTATTTGACCA 57.534 36.000 10.27 0.00 45.77 4.02
826 871 2.746277 GAGTTTCACGGCCCGCAT 60.746 61.111 1.23 0.00 0.00 4.73
829 874 3.869473 TTCGGAGTTTCACGGCCCG 62.869 63.158 0.00 0.00 41.36 6.13
954 1002 2.302260 GCAGGAGGCCTAATCTTTTCC 58.698 52.381 4.42 0.00 36.11 3.13
955 1003 3.004752 TGCAGGAGGCCTAATCTTTTC 57.995 47.619 4.42 0.00 43.89 2.29
980 1028 3.423154 CGCCGCCTTCACAACTCC 61.423 66.667 0.00 0.00 0.00 3.85
981 1029 3.423154 CCGCCGCCTTCACAACTC 61.423 66.667 0.00 0.00 0.00 3.01
984 1032 4.028490 ATCCCGCCGCCTTCACAA 62.028 61.111 0.00 0.00 0.00 3.33
985 1033 4.776322 CATCCCGCCGCCTTCACA 62.776 66.667 0.00 0.00 0.00 3.58
986 1034 3.757248 ATCATCCCGCCGCCTTCAC 62.757 63.158 0.00 0.00 0.00 3.18
987 1035 3.460672 GATCATCCCGCCGCCTTCA 62.461 63.158 0.00 0.00 0.00 3.02
1107 1157 1.667154 CCAACGAGGAGATGGCGAGA 61.667 60.000 0.00 0.00 41.22 4.04
1138 1197 2.123554 GGGTACGGACGGATCCCT 60.124 66.667 6.06 0.00 42.83 4.20
1144 1203 0.672342 CCTAGATTGGGTACGGACGG 59.328 60.000 0.00 0.00 0.00 4.79
1146 1205 0.031721 CGCCTAGATTGGGTACGGAC 59.968 60.000 0.00 0.00 0.00 4.79
1150 1209 0.596859 GCGTCGCCTAGATTGGGTAC 60.597 60.000 5.75 0.00 0.00 3.34
1172 1232 9.903682 AAAGATCTCAACAATAAATTGACAGTG 57.096 29.630 9.60 0.00 40.14 3.66
1196 1256 5.220510 CGGACGATTCGGATGAAAACATAAA 60.221 40.000 11.29 0.00 37.71 1.40
1206 1266 1.588404 CAAGAACGGACGATTCGGATG 59.412 52.381 11.29 1.79 0.00 3.51
1285 1345 2.433664 CCTCCGTTTCCGTTCGGG 60.434 66.667 11.37 0.00 45.79 5.14
1310 1370 3.977244 GTGCTTGGGGCCAACACG 61.977 66.667 4.39 1.42 40.92 4.49
1311 1371 3.977244 CGTGCTTGGGGCCAACAC 61.977 66.667 4.39 6.63 40.92 3.32
1314 1374 4.966787 GTCCGTGCTTGGGGCCAA 62.967 66.667 4.39 0.00 40.92 4.52
1316 1376 2.757980 TTTAGTCCGTGCTTGGGGCC 62.758 60.000 0.00 0.00 40.92 5.80
1317 1377 0.679960 ATTTAGTCCGTGCTTGGGGC 60.680 55.000 0.00 0.00 42.22 5.80
1328 1388 3.126343 CACAACGGCTAACCATTTAGTCC 59.874 47.826 0.00 0.00 36.69 3.85
1345 1405 3.611766 ACTACCTGGTGCTATCACAAC 57.388 47.619 10.23 0.00 44.87 3.32
1376 1436 5.579564 AGTTACATCGACTCCCTTTCTAC 57.420 43.478 0.00 0.00 0.00 2.59
1439 1499 3.943381 TCTGCACTGAATGATTCCATGTC 59.057 43.478 2.26 0.00 32.36 3.06
1479 1539 2.410053 CGACTTTGAAAAGAGCCTCTCG 59.590 50.000 9.71 3.81 39.31 4.04
1484 1546 2.480802 GTCCTCGACTTTGAAAAGAGCC 59.519 50.000 9.71 0.00 39.31 4.70
1505 1567 7.661040 ACATTTCTTCAGTTTTATCAACTGGG 58.339 34.615 13.42 8.05 45.66 4.45
1532 1594 2.350484 GGTACGCTTGCAGGAAAACTTC 60.350 50.000 0.00 0.00 0.00 3.01
1552 1614 3.611766 ACTCGACCCTTGAACTAATGG 57.388 47.619 0.00 0.00 0.00 3.16
1557 1619 4.884668 TTATCAACTCGACCCTTGAACT 57.115 40.909 0.79 0.00 30.32 3.01
1566 1628 8.283291 ACATTTCTTCAGTTTTATCAACTCGAC 58.717 33.333 0.00 0.00 0.00 4.20
1569 1631 9.950680 TCAACATTTCTTCAGTTTTATCAACTC 57.049 29.630 0.00 0.00 0.00 3.01
1623 1685 5.006649 TGTGCAATCAAGTCGCATATTACTC 59.993 40.000 0.00 0.00 38.07 2.59
1626 1688 5.809719 TTGTGCAATCAAGTCGCATATTA 57.190 34.783 0.00 0.00 38.07 0.98
1707 1770 9.117183 ACATATAAAAGGTTAATTCGAGGGAAC 57.883 33.333 0.00 0.00 34.37 3.62
1721 1784 8.366359 AGCCAAAAGAATCACATATAAAAGGT 57.634 30.769 0.00 0.00 0.00 3.50
1730 1793 6.183360 GCATCTAAGAGCCAAAAGAATCACAT 60.183 38.462 0.00 0.00 0.00 3.21
1768 1874 7.038302 AGTCTGGTAGGTTCATACTCATTGAAA 60.038 37.037 0.00 0.00 35.03 2.69
1772 1878 6.097554 CAGAGTCTGGTAGGTTCATACTCATT 59.902 42.308 12.67 0.00 39.38 2.57
1795 1901 1.226974 CCGTGATCCGTGTAGGCAG 60.227 63.158 0.00 0.00 40.77 4.85
1796 1902 1.252215 TTCCGTGATCCGTGTAGGCA 61.252 55.000 0.00 0.00 40.77 4.75
1797 1903 0.104304 ATTCCGTGATCCGTGTAGGC 59.896 55.000 0.00 0.00 40.77 3.93
1798 1904 1.538204 CCATTCCGTGATCCGTGTAGG 60.538 57.143 0.00 0.00 42.97 3.18
1799 1905 1.407618 TCCATTCCGTGATCCGTGTAG 59.592 52.381 0.00 0.00 33.66 2.74
1800 1906 1.135527 GTCCATTCCGTGATCCGTGTA 59.864 52.381 0.00 0.00 33.66 2.90
1801 1907 0.108329 GTCCATTCCGTGATCCGTGT 60.108 55.000 0.00 0.00 33.66 4.49
1802 1908 0.108377 TGTCCATTCCGTGATCCGTG 60.108 55.000 0.00 0.00 33.66 4.94
1803 1909 0.830648 ATGTCCATTCCGTGATCCGT 59.169 50.000 0.00 0.00 33.66 4.69
1804 1910 1.953559 AATGTCCATTCCGTGATCCG 58.046 50.000 0.00 0.00 0.00 4.18
1805 1911 4.423732 CAAAAATGTCCATTCCGTGATCC 58.576 43.478 0.00 0.00 0.00 3.36
1806 1912 3.859386 GCAAAAATGTCCATTCCGTGATC 59.141 43.478 0.00 0.00 0.00 2.92
1807 1913 3.673052 CGCAAAAATGTCCATTCCGTGAT 60.673 43.478 0.00 0.00 0.00 3.06
1808 1914 2.351253 CGCAAAAATGTCCATTCCGTGA 60.351 45.455 0.00 0.00 0.00 4.35
1809 1915 1.984990 CGCAAAAATGTCCATTCCGTG 59.015 47.619 0.00 0.00 0.00 4.94
1810 1916 1.668628 GCGCAAAAATGTCCATTCCGT 60.669 47.619 0.30 0.00 0.00 4.69
1811 1917 0.991344 GCGCAAAAATGTCCATTCCG 59.009 50.000 0.30 0.00 0.00 4.30
1812 1918 0.991344 CGCGCAAAAATGTCCATTCC 59.009 50.000 8.75 0.00 0.00 3.01
1813 1919 1.386412 CACGCGCAAAAATGTCCATTC 59.614 47.619 5.73 0.00 0.00 2.67
1814 1920 1.269517 ACACGCGCAAAAATGTCCATT 60.270 42.857 5.73 0.00 0.00 3.16
1815 1921 0.313672 ACACGCGCAAAAATGTCCAT 59.686 45.000 5.73 0.00 0.00 3.41
1816 1922 0.101399 AACACGCGCAAAAATGTCCA 59.899 45.000 5.73 0.00 0.00 4.02
1817 1923 0.502275 CAACACGCGCAAAAATGTCC 59.498 50.000 5.73 0.00 0.00 4.02
1818 1924 0.111748 GCAACACGCGCAAAAATGTC 60.112 50.000 5.73 0.00 0.00 3.06
1819 1925 1.923619 GCAACACGCGCAAAAATGT 59.076 47.368 5.73 0.00 0.00 2.71
1820 1926 4.776174 GCAACACGCGCAAAAATG 57.224 50.000 5.73 0.00 0.00 2.32
1840 1946 7.093684 TGCAAAGATTGTTAGTTATTAACCCCC 60.094 37.037 2.92 0.00 40.80 5.40
1841 1947 7.832769 TGCAAAGATTGTTAGTTATTAACCCC 58.167 34.615 2.92 0.00 40.80 4.95
1842 1948 9.301153 CATGCAAAGATTGTTAGTTATTAACCC 57.699 33.333 2.92 0.00 40.80 4.11
1852 1958 9.350357 GCCATAATATCATGCAAAGATTGTTAG 57.650 33.333 9.89 0.62 0.00 2.34
1853 1959 8.022550 CGCCATAATATCATGCAAAGATTGTTA 58.977 33.333 9.89 9.94 0.00 2.41
1854 1960 6.864685 CGCCATAATATCATGCAAAGATTGTT 59.135 34.615 9.89 8.45 0.00 2.83
1855 1961 6.384224 CGCCATAATATCATGCAAAGATTGT 58.616 36.000 9.89 0.00 0.00 2.71
1856 1962 5.287752 GCGCCATAATATCATGCAAAGATTG 59.712 40.000 9.89 3.46 0.00 2.67
1857 1963 5.047872 TGCGCCATAATATCATGCAAAGATT 60.048 36.000 4.18 4.33 0.00 2.40
1858 1964 4.460034 TGCGCCATAATATCATGCAAAGAT 59.540 37.500 4.18 9.59 0.00 2.40
1859 1965 3.819902 TGCGCCATAATATCATGCAAAGA 59.180 39.130 4.18 0.00 0.00 2.52
1860 1966 4.163458 TGCGCCATAATATCATGCAAAG 57.837 40.909 4.18 0.00 0.00 2.77
1861 1967 4.581077 TTGCGCCATAATATCATGCAAA 57.419 36.364 4.18 0.00 37.85 3.68
1862 1968 4.581077 TTTGCGCCATAATATCATGCAA 57.419 36.364 4.18 0.00 38.89 4.08
1863 1969 4.217983 TGATTTGCGCCATAATATCATGCA 59.782 37.500 4.18 0.00 0.00 3.96
1864 1970 4.735985 TGATTTGCGCCATAATATCATGC 58.264 39.130 4.18 0.00 0.00 4.06
1865 1971 5.946298 ACTGATTTGCGCCATAATATCATG 58.054 37.500 4.18 0.00 0.00 3.07
1866 1972 6.384224 CAACTGATTTGCGCCATAATATCAT 58.616 36.000 4.18 0.00 0.00 2.45
1867 1973 5.278414 CCAACTGATTTGCGCCATAATATCA 60.278 40.000 4.18 1.58 33.34 2.15
1868 1974 5.156355 CCAACTGATTTGCGCCATAATATC 58.844 41.667 4.18 0.00 33.34 1.63
1869 1975 4.584325 ACCAACTGATTTGCGCCATAATAT 59.416 37.500 4.18 0.00 33.34 1.28
1870 1976 3.951037 ACCAACTGATTTGCGCCATAATA 59.049 39.130 4.18 0.00 33.34 0.98
1871 1977 2.760092 ACCAACTGATTTGCGCCATAAT 59.240 40.909 4.18 1.53 33.34 1.28
1872 1978 2.163412 GACCAACTGATTTGCGCCATAA 59.837 45.455 4.18 0.00 33.34 1.90
1873 1979 1.742831 GACCAACTGATTTGCGCCATA 59.257 47.619 4.18 0.00 33.34 2.74
1878 1984 3.250762 TGAGAAAGACCAACTGATTTGCG 59.749 43.478 0.00 0.00 33.34 4.85
1887 1993 5.106515 GCCAACTCTTATGAGAAAGACCAAC 60.107 44.000 12.31 0.00 42.73 3.77
1899 2005 5.452078 TCAACTTTTGGCCAACTCTTATG 57.548 39.130 20.35 12.70 0.00 1.90
1901 2007 7.669722 AGATTATCAACTTTTGGCCAACTCTTA 59.330 33.333 20.35 0.00 0.00 2.10
1923 2038 0.333993 ATGGACAAGGCCAGCAGATT 59.666 50.000 5.01 0.00 42.15 2.40
1991 2106 8.495949 CCAAAGTTATGCTTATATACTTGTCGG 58.504 37.037 0.00 0.00 36.17 4.79
2006 2121 6.985188 TCTACAAGACATCCAAAGTTATGC 57.015 37.500 0.00 0.00 0.00 3.14
2036 2151 3.560636 AGGAGTAAAGCTTGTGTGTGT 57.439 42.857 0.00 0.00 0.00 3.72
2041 2156 5.063880 ACCTAACAAGGAGTAAAGCTTGTG 58.936 41.667 0.00 0.00 39.58 3.33
2075 2190 8.443953 AGCACTAAAAGAGCTCCAATAATAAG 57.556 34.615 10.93 0.30 37.62 1.73
2132 2247 9.667107 TTTCTCTGTTTCGAATCCATATAAACT 57.333 29.630 0.00 0.00 32.57 2.66
2169 2287 6.936279 TGGCCCATCATTTTAAAATTAACGA 58.064 32.000 10.77 6.00 0.00 3.85
2179 2297 4.618635 TCCTTCATTGGCCCATCATTTTA 58.381 39.130 0.00 0.00 0.00 1.52
2184 2302 1.213678 CTCTCCTTCATTGGCCCATCA 59.786 52.381 0.00 0.00 0.00 3.07
2240 2358 1.727062 TTTGGGTGGAATGTGGCATT 58.273 45.000 0.00 0.00 0.00 3.56
2269 2387 3.560068 GGTGATATAAAAGCTCACACCCG 59.440 47.826 0.00 0.00 40.80 5.28
2301 2419 7.638444 TCCACTTTCATCCAATATGTAAAGGA 58.362 34.615 0.00 0.00 34.12 3.36
2400 2518 6.502074 AATGTTTAAGGCCCAAAAAGGTAA 57.498 33.333 0.00 0.00 34.66 2.85
2401 2519 6.502074 AAATGTTTAAGGCCCAAAAAGGTA 57.498 33.333 0.00 0.00 34.66 3.08
2402 2520 5.381184 AAATGTTTAAGGCCCAAAAAGGT 57.619 34.783 0.00 0.00 34.66 3.50
2403 2521 7.276878 CGTATAAATGTTTAAGGCCCAAAAAGG 59.723 37.037 0.00 0.00 37.03 3.11
2404 2522 7.815549 ACGTATAAATGTTTAAGGCCCAAAAAG 59.184 33.333 0.00 0.00 0.00 2.27
2405 2523 7.668492 ACGTATAAATGTTTAAGGCCCAAAAA 58.332 30.769 0.00 0.00 0.00 1.94
2406 2524 7.229581 ACGTATAAATGTTTAAGGCCCAAAA 57.770 32.000 0.00 0.00 0.00 2.44
2407 2525 6.837471 ACGTATAAATGTTTAAGGCCCAAA 57.163 33.333 0.00 0.00 0.00 3.28
2408 2526 6.837471 AACGTATAAATGTTTAAGGCCCAA 57.163 33.333 0.00 0.00 30.39 4.12
2409 2527 6.837471 AAACGTATAAATGTTTAAGGCCCA 57.163 33.333 0.00 0.00 41.88 5.36
2425 2543 8.046294 TCTTACCATGCACAATAAAAACGTAT 57.954 30.769 0.00 0.00 0.00 3.06
2440 2558 4.518211 AGCTATCTGCAAATCTTACCATGC 59.482 41.667 0.00 0.00 45.94 4.06
2447 2565 7.394359 TGAACCTTTTAGCTATCTGCAAATCTT 59.606 33.333 0.00 0.00 45.94 2.40
2456 2574 7.772757 CCTCAGAATTGAACCTTTTAGCTATCT 59.227 37.037 0.00 0.00 31.69 1.98
2593 2718 6.116126 CCTCTGCTATTTACCTAAGCAAACT 58.884 40.000 0.00 0.00 45.04 2.66
2599 2724 5.360591 CACCACCTCTGCTATTTACCTAAG 58.639 45.833 0.00 0.00 0.00 2.18
2634 2759 3.859961 CGCAACAACAACATACCAAACAA 59.140 39.130 0.00 0.00 0.00 2.83
2753 2895 6.093219 CAGTGAACAGAAGATTTACCTGATGG 59.907 42.308 0.00 0.00 39.83 3.51
2885 3029 4.410228 AGCATGTGTCAGTTATAGGATGGT 59.590 41.667 0.00 0.00 0.00 3.55
2888 3032 9.060347 CAATTTAGCATGTGTCAGTTATAGGAT 57.940 33.333 0.00 0.00 0.00 3.24
3003 3147 6.184789 TCATCCAAGGTTTACTTTACCCATC 58.815 40.000 0.00 0.00 37.29 3.51
3051 3195 6.279513 TGCTTTGACAGGAGAAAAGAAAAA 57.720 33.333 0.00 0.00 33.63 1.94
3056 3200 4.047142 GCTTTGCTTTGACAGGAGAAAAG 58.953 43.478 13.35 13.35 40.17 2.27
3066 3210 3.923017 AGTGTATGGCTTTGCTTTGAC 57.077 42.857 0.00 0.00 0.00 3.18
3167 3311 0.108898 AGCTCACAGAGTCATCGTGC 60.109 55.000 0.00 0.00 33.10 5.34
3172 3316 2.902486 TCCTCAAAGCTCACAGAGTCAT 59.098 45.455 0.00 0.00 31.39 3.06
3176 3320 3.870419 GCTAATCCTCAAAGCTCACAGAG 59.130 47.826 0.00 0.00 33.40 3.35
3189 3333 5.568685 GAGGAACTTTTTGGCTAATCCTC 57.431 43.478 12.07 12.07 41.55 3.71
3209 3353 5.551233 TCTTTTGTAGAACCATCACCAGAG 58.449 41.667 0.00 0.00 0.00 3.35
3211 3355 5.182001 CCTTCTTTTGTAGAACCATCACCAG 59.818 44.000 0.00 0.00 37.96 4.00
3221 3367 9.349713 ACACATAATGAACCTTCTTTTGTAGAA 57.650 29.630 0.00 0.00 40.57 2.10
3223 3369 8.783093 TCACACATAATGAACCTTCTTTTGTAG 58.217 33.333 0.00 0.00 0.00 2.74
3238 3384 7.755591 AGCATCTTTACAACTCACACATAATG 58.244 34.615 0.00 0.00 0.00 1.90
3239 3385 7.928307 AGCATCTTTACAACTCACACATAAT 57.072 32.000 0.00 0.00 0.00 1.28
3280 3426 2.027377 CAGTCTCCATCTTCCTTGTGCT 60.027 50.000 0.00 0.00 0.00 4.40
3281 3427 2.354259 CAGTCTCCATCTTCCTTGTGC 58.646 52.381 0.00 0.00 0.00 4.57
3282 3428 2.304180 ACCAGTCTCCATCTTCCTTGTG 59.696 50.000 0.00 0.00 0.00 3.33
3288 3434 3.118811 CCTCTCAACCAGTCTCCATCTTC 60.119 52.174 0.00 0.00 0.00 2.87
3365 3512 1.806542 CCCAACCTCAGAATGACAACG 59.193 52.381 0.00 0.00 42.56 4.10
3400 3547 6.055588 AGTAAAGTAATCATGGGTCCATTCG 58.944 40.000 0.00 0.00 33.90 3.34
3435 3582 1.086696 CACTACCGGTTGCATTCCAG 58.913 55.000 15.04 3.26 0.00 3.86
3508 3655 5.253330 TGATAACCTAACAGGAAAGGCTTG 58.747 41.667 0.00 0.00 37.67 4.01
3518 3665 4.876107 AGGAACGCATTGATAACCTAACAG 59.124 41.667 0.00 0.00 0.00 3.16
3524 3671 3.427503 CCACAAGGAACGCATTGATAACC 60.428 47.826 0.00 0.00 38.00 2.85
3546 3693 1.947456 GGTTCAAGTGTCCCTGTCAAC 59.053 52.381 0.00 0.00 0.00 3.18
3559 3706 4.424061 TGCATTTCGAATCTGGTTCAAG 57.576 40.909 0.00 0.00 36.60 3.02
3630 3777 6.100004 CACCACGATTAACTATCAGAACAGT 58.900 40.000 0.00 0.00 32.45 3.55
3637 3784 5.184287 TGTGAGACACCACGATTAACTATCA 59.816 40.000 0.00 0.00 39.80 2.15
3690 3852 7.551585 ACTATCAGAACATATATAGCAGGTGC 58.448 38.462 0.00 0.00 42.49 5.01
3701 3863 9.396022 CCAAACCAGTTAACTATCAGAACATAT 57.604 33.333 8.04 0.00 0.00 1.78
3702 3864 8.380099 ACCAAACCAGTTAACTATCAGAACATA 58.620 33.333 8.04 0.00 0.00 2.29
3703 3865 7.174946 CACCAAACCAGTTAACTATCAGAACAT 59.825 37.037 8.04 0.00 0.00 2.71
3704 3866 6.485313 CACCAAACCAGTTAACTATCAGAACA 59.515 38.462 8.04 0.00 0.00 3.18
3705 3867 6.072673 CCACCAAACCAGTTAACTATCAGAAC 60.073 42.308 8.04 0.00 0.00 3.01
3706 3868 6.001460 CCACCAAACCAGTTAACTATCAGAA 58.999 40.000 8.04 0.00 0.00 3.02
3707 3869 5.514136 CCCACCAAACCAGTTAACTATCAGA 60.514 44.000 8.04 0.00 0.00 3.27
3708 3870 4.700213 CCCACCAAACCAGTTAACTATCAG 59.300 45.833 8.04 0.38 0.00 2.90
3709 3871 4.105057 ACCCACCAAACCAGTTAACTATCA 59.895 41.667 8.04 0.00 0.00 2.15
3710 3872 4.659115 ACCCACCAAACCAGTTAACTATC 58.341 43.478 8.04 0.00 0.00 2.08
3711 3873 4.352893 AGACCCACCAAACCAGTTAACTAT 59.647 41.667 8.04 0.00 0.00 2.12
3712 3874 3.717913 AGACCCACCAAACCAGTTAACTA 59.282 43.478 8.04 0.00 0.00 2.24
3713 3875 2.512476 AGACCCACCAAACCAGTTAACT 59.488 45.455 1.12 1.12 0.00 2.24
3714 3876 2.940158 AGACCCACCAAACCAGTTAAC 58.060 47.619 0.00 0.00 0.00 2.01
3715 3877 3.203487 AGAAGACCCACCAAACCAGTTAA 59.797 43.478 0.00 0.00 0.00 2.01
3716 3878 2.781174 AGAAGACCCACCAAACCAGTTA 59.219 45.455 0.00 0.00 0.00 2.24
3717 3879 1.569072 AGAAGACCCACCAAACCAGTT 59.431 47.619 0.00 0.00 0.00 3.16
3718 3880 1.222567 AGAAGACCCACCAAACCAGT 58.777 50.000 0.00 0.00 0.00 4.00
3719 3881 2.637872 TCTAGAAGACCCACCAAACCAG 59.362 50.000 0.00 0.00 0.00 4.00
3720 3882 2.696775 TCTAGAAGACCCACCAAACCA 58.303 47.619 0.00 0.00 0.00 3.67
3721 3883 3.782656 TTCTAGAAGACCCACCAAACC 57.217 47.619 0.00 0.00 0.00 3.27
3722 3884 4.010349 CCATTCTAGAAGACCCACCAAAC 58.990 47.826 11.53 0.00 0.00 2.93
3793 3955 4.219033 CGAGAAAAATTCGACCAAAGGTG 58.781 43.478 0.00 0.00 40.36 4.00
3796 3958 6.892951 CGTATACGAGAAAAATTCGACCAAAG 59.107 38.462 20.58 0.00 43.02 2.77
3801 3963 5.004156 ACTGCGTATACGAGAAAAATTCGAC 59.996 40.000 28.66 6.60 43.02 4.20
3807 3970 6.029607 ACGATAACTGCGTATACGAGAAAAA 58.970 36.000 28.66 9.01 40.65 1.94
3818 3981 3.547413 CGGAGATCAACGATAACTGCGTA 60.547 47.826 3.29 0.00 41.75 4.42
3878 4041 2.222027 AGTCCTGAAACTTTTCCTGCG 58.778 47.619 0.00 0.00 36.36 5.18
3964 4131 0.881118 GCGCTTTCTTTCATGGTCCA 59.119 50.000 0.00 0.00 0.00 4.02
3985 4152 1.675524 GCTCGTTTCTTCGTCTCCGC 61.676 60.000 0.00 0.00 0.00 5.54
4031 4198 1.827399 ATTGGACCAAGACGACGCCT 61.827 55.000 13.43 0.00 0.00 5.52
4057 4224 2.941453 TGTTTAAAGCACGGCAAACA 57.059 40.000 8.09 8.09 38.26 2.83
4058 4225 2.474735 CCATGTTTAAAGCACGGCAAAC 59.525 45.455 0.00 2.20 0.00 2.93
4110 4277 2.094894 CCACATCATGTCGAGCAAAGAC 59.905 50.000 0.00 0.00 38.98 3.01
4113 4280 2.470983 TCCACATCATGTCGAGCAAA 57.529 45.000 0.00 0.00 0.00 3.68
4117 4284 2.674852 CCAAGTTCCACATCATGTCGAG 59.325 50.000 0.00 0.00 0.00 4.04
4170 4337 0.041312 CAACGTTTCGAGCCACTTGG 60.041 55.000 0.00 0.00 38.53 3.61
4205 4372 2.360844 TGTTCGCTGACAAGGACAAAA 58.639 42.857 0.00 0.00 0.00 2.44
4206 4373 2.031258 TGTTCGCTGACAAGGACAAA 57.969 45.000 0.00 0.00 0.00 2.83
4207 4374 2.031258 TTGTTCGCTGACAAGGACAA 57.969 45.000 1.47 1.47 34.77 3.18
4208 4375 2.143122 GATTGTTCGCTGACAAGGACA 58.857 47.619 7.63 0.00 42.28 4.02
4324 4508 6.024552 TCCAGAAATAAAAACATCACTGCC 57.975 37.500 0.00 0.00 0.00 4.85
4325 4509 6.913170 TCTCCAGAAATAAAAACATCACTGC 58.087 36.000 0.00 0.00 0.00 4.40
4326 4510 7.025963 GCTCTCCAGAAATAAAAACATCACTG 58.974 38.462 0.00 0.00 0.00 3.66
4327 4511 6.944862 AGCTCTCCAGAAATAAAAACATCACT 59.055 34.615 0.00 0.00 0.00 3.41
4328 4512 7.150783 AGCTCTCCAGAAATAAAAACATCAC 57.849 36.000 0.00 0.00 0.00 3.06
4330 4514 7.820648 TGAAGCTCTCCAGAAATAAAAACATC 58.179 34.615 0.00 0.00 0.00 3.06
4339 4526 6.558488 AAGATACTGAAGCTCTCCAGAAAT 57.442 37.500 15.01 9.17 34.65 2.17
4367 4554 8.349568 ACCAAGAGTTTGAGTTTATAAATCCC 57.650 34.615 0.31 0.00 36.36 3.85
4382 4569 6.262207 AGGGAGTACTGTATACCAAGAGTTT 58.738 40.000 0.00 0.00 0.00 2.66
4392 4579 4.785346 AGAACGGAGGGAGTACTGTATA 57.215 45.455 0.00 0.00 0.00 1.47
4396 4583 4.796038 TTTTAGAACGGAGGGAGTACTG 57.204 45.455 0.00 0.00 0.00 2.74
4397 4584 7.486407 TTTATTTTAGAACGGAGGGAGTACT 57.514 36.000 0.00 0.00 0.00 2.73
4398 4585 7.983484 TCATTTATTTTAGAACGGAGGGAGTAC 59.017 37.037 0.00 0.00 0.00 2.73
4399 4586 7.983484 GTCATTTATTTTAGAACGGAGGGAGTA 59.017 37.037 0.00 0.00 0.00 2.59
4401 4588 7.048512 AGTCATTTATTTTAGAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
4402 4589 6.954232 AGTCATTTATTTTAGAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
4403 4590 6.821665 TGAGTCATTTATTTTAGAACGGAGGG 59.178 38.462 0.00 0.00 0.00 4.30
4404 4591 7.843490 TGAGTCATTTATTTTAGAACGGAGG 57.157 36.000 0.00 0.00 0.00 4.30
4463 4650 9.841295 GGATGTGTGTAATTATTACTCCCTTTA 57.159 33.333 15.05 0.00 37.06 1.85
4464 4651 7.778382 GGGATGTGTGTAATTATTACTCCCTTT 59.222 37.037 22.04 5.11 40.14 3.11
4465 4652 7.092174 TGGGATGTGTGTAATTATTACTCCCTT 60.092 37.037 25.99 11.69 42.11 3.95
4466 4653 6.388689 TGGGATGTGTGTAATTATTACTCCCT 59.611 38.462 25.99 10.01 42.11 4.20
4467 4654 6.597562 TGGGATGTGTGTAATTATTACTCCC 58.402 40.000 22.32 22.32 42.03 4.30
4468 4655 7.554835 TGTTGGGATGTGTGTAATTATTACTCC 59.445 37.037 15.05 12.39 37.06 3.85
4469 4656 8.500753 TGTTGGGATGTGTGTAATTATTACTC 57.499 34.615 15.05 12.15 37.06 2.59
4470 4657 7.556275 CCTGTTGGGATGTGTGTAATTATTACT 59.444 37.037 15.05 0.00 35.65 2.24
4471 4658 7.681065 GCCTGTTGGGATGTGTGTAATTATTAC 60.681 40.741 8.07 8.07 37.23 1.89
4472 4659 6.320164 GCCTGTTGGGATGTGTGTAATTATTA 59.680 38.462 0.00 0.00 37.23 0.98
4473 4660 5.127031 GCCTGTTGGGATGTGTGTAATTATT 59.873 40.000 0.00 0.00 37.23 1.40
4474 4661 4.644685 GCCTGTTGGGATGTGTGTAATTAT 59.355 41.667 0.00 0.00 37.23 1.28
4477 4664 2.446435 GCCTGTTGGGATGTGTGTAAT 58.554 47.619 0.00 0.00 37.23 1.89
4521 4708 0.752658 AGCAGGGCCTGTTTGTTTTC 59.247 50.000 32.80 14.74 33.43 2.29
4526 4713 1.549203 ATGTTAGCAGGGCCTGTTTG 58.451 50.000 32.80 10.90 33.43 2.93
4544 4732 5.045942 ACCAATTCCAGGCGGATTTTAAAAT 60.046 36.000 13.24 13.24 42.41 1.82
4623 4811 6.016943 CGGTTAGATTCTGGTACTCCTAGAAG 60.017 46.154 0.00 0.00 35.78 2.85
4635 4823 2.128035 GACGATGCGGTTAGATTCTGG 58.872 52.381 0.00 0.00 0.00 3.86
4638 4828 1.523095 GCAGACGATGCGGTTAGATTC 59.477 52.381 0.00 0.00 46.99 2.52
4653 4843 5.814764 ACAAATCAGATTCAGATGCAGAC 57.185 39.130 0.00 0.00 0.00 3.51
4664 4854 4.025813 GCAACGCAACAAACAAATCAGATT 60.026 37.500 0.00 0.00 0.00 2.40
4687 4883 3.181507 ACAAAGATCACGGCAATGATTCG 60.182 43.478 3.67 0.00 39.48 3.34
4689 4885 3.758023 TCACAAAGATCACGGCAATGATT 59.242 39.130 3.67 0.00 39.48 2.57
4746 4942 9.057089 AGATTAGTAATCATTCTAAAAAGGCCG 57.943 33.333 22.00 0.00 40.42 6.13
4776 4972 3.068165 TGCATGGATCCAACGACTAGTAG 59.932 47.826 20.67 0.00 0.00 2.57
4777 4973 3.028130 TGCATGGATCCAACGACTAGTA 58.972 45.455 20.67 0.00 0.00 1.82
4778 4974 1.831106 TGCATGGATCCAACGACTAGT 59.169 47.619 20.67 0.00 0.00 2.57
4782 4978 0.029834 GCATGCATGGATCCAACGAC 59.970 55.000 27.34 9.05 0.00 4.34
4813 5009 0.879400 CAGATCAGATGGGAGCGTGC 60.879 60.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.