Multiple sequence alignment - TraesCS5A01G315900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G315900 chr5A 100.000 3023 0 0 1 3023 526403014 526399992 0.000000e+00 5583.0
1 TraesCS5A01G315900 chr5D 95.350 2473 74 14 574 3023 413762530 413760076 0.000000e+00 3892.0
2 TraesCS5A01G315900 chr5B 94.483 2302 83 11 746 3023 498888888 498886607 0.000000e+00 3507.0
3 TraesCS5A01G315900 chr5B 80.000 125 21 3 574 695 498889110 498888987 4.150000e-14 89.8
4 TraesCS5A01G315900 chrUn 100.000 396 0 0 2367 2762 479193544 479193149 0.000000e+00 732.0
5 TraesCS5A01G315900 chr4A 88.078 411 29 5 33 426 87391740 87392147 1.270000e-128 470.0
6 TraesCS5A01G315900 chr4A 86.747 83 11 0 460 542 679166663 679166581 3.210000e-15 93.5
7 TraesCS5A01G315900 chr4B 90.545 275 21 3 144 418 464226967 464226698 2.870000e-95 359.0
8 TraesCS5A01G315900 chr4B 88.525 61 3 2 404 464 464226683 464226627 1.500000e-08 71.3
9 TraesCS5A01G315900 chr4D 82.584 356 29 15 31 386 378283267 378282945 1.770000e-72 283.0
10 TraesCS5A01G315900 chr2D 90.244 82 8 0 460 541 31816170 31816251 1.150000e-19 108.0
11 TraesCS5A01G315900 chr2D 90.244 82 8 0 460 541 638879435 638879354 1.150000e-19 108.0
12 TraesCS5A01G315900 chr2D 89.024 82 9 0 460 541 344300930 344301011 5.330000e-18 102.0
13 TraesCS5A01G315900 chr3B 90.909 77 7 0 460 536 806052966 806053042 1.480000e-18 104.0
14 TraesCS5A01G315900 chr6D 89.024 82 6 2 460 541 28622059 28621981 6.900000e-17 99.0
15 TraesCS5A01G315900 chr7B 87.805 82 10 0 460 541 92065745 92065826 2.480000e-16 97.1
16 TraesCS5A01G315900 chr1A 87.805 82 10 0 460 541 6564268 6564187 2.480000e-16 97.1
17 TraesCS5A01G315900 chr6A 89.130 46 2 3 674 717 604108585 604108629 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G315900 chr5A 526399992 526403014 3022 True 5583.0 5583 100.0000 1 3023 1 chr5A.!!$R1 3022
1 TraesCS5A01G315900 chr5D 413760076 413762530 2454 True 3892.0 3892 95.3500 574 3023 1 chr5D.!!$R1 2449
2 TraesCS5A01G315900 chr5B 498886607 498889110 2503 True 1798.4 3507 87.2415 574 3023 2 chr5B.!!$R1 2449

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.036448 CCAAAATGCCATGGCCAACA 59.964 50.0 33.44 15.97 41.09 3.33 F
307 308 0.036765 CATCCACCTCGTCCGGAAAA 60.037 55.0 5.23 0.00 31.18 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 1993 2.154462 CTCCTTGAACCGCTTGACATT 58.846 47.619 0.0 0.0 0.0 2.71 R
2126 2203 2.423538 CAGATTTGCTCCCTAAAACCCG 59.576 50.000 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.429791 GATCCTTTGAAACCTTCTAGAAGC 57.570 41.667 24.58 12.79 37.11 3.86
24 25 5.568620 TCCTTTGAAACCTTCTAGAAGCT 57.431 39.130 24.58 10.59 37.11 3.74
25 26 5.941788 TCCTTTGAAACCTTCTAGAAGCTT 58.058 37.500 24.58 19.06 37.11 3.74
26 27 5.998363 TCCTTTGAAACCTTCTAGAAGCTTC 59.002 40.000 24.58 24.74 37.11 3.86
27 28 5.765182 CCTTTGAAACCTTCTAGAAGCTTCA 59.235 40.000 27.73 27.73 37.16 3.02
28 29 6.293680 CCTTTGAAACCTTCTAGAAGCTTCAC 60.294 42.308 29.57 19.74 37.90 3.18
29 30 4.307432 TGAAACCTTCTAGAAGCTTCACG 58.693 43.478 27.73 17.29 35.59 4.35
30 31 3.320673 AACCTTCTAGAAGCTTCACGG 57.679 47.619 27.57 19.73 37.11 4.94
31 32 2.249139 ACCTTCTAGAAGCTTCACGGT 58.751 47.619 27.57 20.30 37.11 4.83
32 33 3.428532 ACCTTCTAGAAGCTTCACGGTA 58.571 45.455 27.57 10.68 37.11 4.02
33 34 3.193056 ACCTTCTAGAAGCTTCACGGTAC 59.807 47.826 27.57 0.00 37.11 3.34
51 52 5.278964 GGTACGTCCATTTCTGTTTTCTC 57.721 43.478 0.00 0.00 35.97 2.87
52 53 4.143179 GGTACGTCCATTTCTGTTTTCTCG 60.143 45.833 0.00 0.00 35.97 4.04
53 54 3.463944 ACGTCCATTTCTGTTTTCTCGT 58.536 40.909 0.00 0.00 0.00 4.18
54 55 3.875134 ACGTCCATTTCTGTTTTCTCGTT 59.125 39.130 0.00 0.00 0.00 3.85
55 56 4.025145 ACGTCCATTTCTGTTTTCTCGTTC 60.025 41.667 0.00 0.00 0.00 3.95
56 57 4.025229 CGTCCATTTCTGTTTTCTCGTTCA 60.025 41.667 0.00 0.00 0.00 3.18
57 58 5.334105 CGTCCATTTCTGTTTTCTCGTTCAT 60.334 40.000 0.00 0.00 0.00 2.57
58 59 6.438763 GTCCATTTCTGTTTTCTCGTTCATT 58.561 36.000 0.00 0.00 0.00 2.57
59 60 6.360681 GTCCATTTCTGTTTTCTCGTTCATTG 59.639 38.462 0.00 0.00 0.00 2.82
60 61 5.630680 CCATTTCTGTTTTCTCGTTCATTGG 59.369 40.000 0.00 0.00 0.00 3.16
61 62 5.828299 TTTCTGTTTTCTCGTTCATTGGT 57.172 34.783 0.00 0.00 0.00 3.67
62 63 5.418310 TTCTGTTTTCTCGTTCATTGGTC 57.582 39.130 0.00 0.00 0.00 4.02
63 64 4.703897 TCTGTTTTCTCGTTCATTGGTCT 58.296 39.130 0.00 0.00 0.00 3.85
64 65 4.511454 TCTGTTTTCTCGTTCATTGGTCTG 59.489 41.667 0.00 0.00 0.00 3.51
65 66 3.563808 TGTTTTCTCGTTCATTGGTCTGG 59.436 43.478 0.00 0.00 0.00 3.86
66 67 1.808411 TTCTCGTTCATTGGTCTGGC 58.192 50.000 0.00 0.00 0.00 4.85
67 68 0.389817 TCTCGTTCATTGGTCTGGCG 60.390 55.000 0.00 0.00 0.00 5.69
68 69 0.670546 CTCGTTCATTGGTCTGGCGT 60.671 55.000 0.00 0.00 0.00 5.68
69 70 0.250124 TCGTTCATTGGTCTGGCGTT 60.250 50.000 0.00 0.00 0.00 4.84
70 71 0.110238 CGTTCATTGGTCTGGCGTTG 60.110 55.000 0.00 0.00 0.00 4.10
71 72 0.240945 GTTCATTGGTCTGGCGTTGG 59.759 55.000 0.00 0.00 0.00 3.77
72 73 0.179004 TTCATTGGTCTGGCGTTGGT 60.179 50.000 0.00 0.00 0.00 3.67
73 74 0.888736 TCATTGGTCTGGCGTTGGTG 60.889 55.000 0.00 0.00 0.00 4.17
74 75 2.268076 ATTGGTCTGGCGTTGGTGC 61.268 57.895 0.00 0.00 0.00 5.01
82 83 2.658268 GCGTTGGTGCCTGTTTGC 60.658 61.111 0.00 0.00 0.00 3.68
83 84 2.027460 CGTTGGTGCCTGTTTGCC 59.973 61.111 0.00 0.00 0.00 4.52
84 85 2.027460 GTTGGTGCCTGTTTGCCG 59.973 61.111 0.00 0.00 0.00 5.69
85 86 3.910490 TTGGTGCCTGTTTGCCGC 61.910 61.111 0.00 0.00 0.00 6.53
91 92 4.999939 CCTGTTTGCCGCGCCAAC 63.000 66.667 0.24 6.29 35.23 3.77
92 93 4.263209 CTGTTTGCCGCGCCAACA 62.263 61.111 0.24 10.54 40.87 3.33
93 94 3.556543 CTGTTTGCCGCGCCAACAT 62.557 57.895 0.24 0.00 41.89 2.71
94 95 3.105157 GTTTGCCGCGCCAACATG 61.105 61.111 0.24 0.00 34.86 3.21
99 100 4.118995 CCGCGCCAACATGCACAT 62.119 61.111 0.00 0.00 0.00 3.21
100 101 2.126385 CGCGCCAACATGCACATT 60.126 55.556 0.00 0.00 0.00 2.71
101 102 1.733758 CGCGCCAACATGCACATTT 60.734 52.632 0.00 0.00 0.00 2.32
102 103 1.782807 GCGCCAACATGCACATTTG 59.217 52.632 0.00 0.00 0.00 2.32
112 113 1.009675 GCACATTTGCGCTATCCCG 60.010 57.895 9.73 0.00 39.50 5.14
121 122 2.840974 CGCTATCCCGCCTTTATGG 58.159 57.895 0.00 0.00 39.35 2.74
144 145 2.857254 CCAAAATGCCATGGCCAAC 58.143 52.632 33.44 7.24 41.09 3.77
145 146 0.036448 CCAAAATGCCATGGCCAACA 59.964 50.000 33.44 15.97 41.09 3.33
146 147 1.158434 CAAAATGCCATGGCCAACAC 58.842 50.000 33.44 6.02 41.09 3.32
147 148 0.763652 AAAATGCCATGGCCAACACA 59.236 45.000 33.44 14.74 41.09 3.72
148 149 0.985760 AAATGCCATGGCCAACACAT 59.014 45.000 33.44 16.49 41.09 3.21
149 150 0.985760 AATGCCATGGCCAACACATT 59.014 45.000 33.44 21.33 41.09 2.71
150 151 0.985760 ATGCCATGGCCAACACATTT 59.014 45.000 33.44 4.50 41.09 2.32
151 152 0.321021 TGCCATGGCCAACACATTTC 59.679 50.000 33.44 2.26 41.09 2.17
152 153 0.321021 GCCATGGCCAACACATTTCA 59.679 50.000 27.24 0.00 34.56 2.69
153 154 1.673626 GCCATGGCCAACACATTTCAG 60.674 52.381 27.24 0.00 34.56 3.02
154 155 1.673626 CCATGGCCAACACATTTCAGC 60.674 52.381 10.96 0.00 0.00 4.26
155 156 0.609662 ATGGCCAACACATTTCAGCC 59.390 50.000 10.96 0.00 40.87 4.85
156 157 2.048601 GGCCAACACATTTCAGCCA 58.951 52.632 0.00 0.00 40.20 4.75
157 158 0.319813 GGCCAACACATTTCAGCCAC 60.320 55.000 0.00 0.00 40.20 5.01
158 159 0.675633 GCCAACACATTTCAGCCACT 59.324 50.000 0.00 0.00 0.00 4.00
159 160 1.069049 GCCAACACATTTCAGCCACTT 59.931 47.619 0.00 0.00 0.00 3.16
160 161 2.483538 GCCAACACATTTCAGCCACTTT 60.484 45.455 0.00 0.00 0.00 2.66
161 162 3.243704 GCCAACACATTTCAGCCACTTTA 60.244 43.478 0.00 0.00 0.00 1.85
162 163 4.298332 CCAACACATTTCAGCCACTTTAC 58.702 43.478 0.00 0.00 0.00 2.01
163 164 4.037923 CCAACACATTTCAGCCACTTTACT 59.962 41.667 0.00 0.00 0.00 2.24
164 165 5.215160 CAACACATTTCAGCCACTTTACTC 58.785 41.667 0.00 0.00 0.00 2.59
165 166 4.718961 ACACATTTCAGCCACTTTACTCT 58.281 39.130 0.00 0.00 0.00 3.24
166 167 4.757149 ACACATTTCAGCCACTTTACTCTC 59.243 41.667 0.00 0.00 0.00 3.20
167 168 4.999950 CACATTTCAGCCACTTTACTCTCT 59.000 41.667 0.00 0.00 0.00 3.10
168 169 5.471456 CACATTTCAGCCACTTTACTCTCTT 59.529 40.000 0.00 0.00 0.00 2.85
169 170 5.471456 ACATTTCAGCCACTTTACTCTCTTG 59.529 40.000 0.00 0.00 0.00 3.02
170 171 4.689612 TTCAGCCACTTTACTCTCTTGT 57.310 40.909 0.00 0.00 0.00 3.16
171 172 4.689612 TCAGCCACTTTACTCTCTTGTT 57.310 40.909 0.00 0.00 0.00 2.83
172 173 5.036117 TCAGCCACTTTACTCTCTTGTTT 57.964 39.130 0.00 0.00 0.00 2.83
173 174 6.169557 TCAGCCACTTTACTCTCTTGTTTA 57.830 37.500 0.00 0.00 0.00 2.01
174 175 6.588204 TCAGCCACTTTACTCTCTTGTTTAA 58.412 36.000 0.00 0.00 0.00 1.52
175 176 7.051623 TCAGCCACTTTACTCTCTTGTTTAAA 58.948 34.615 0.00 0.00 0.00 1.52
176 177 7.554835 TCAGCCACTTTACTCTCTTGTTTAAAA 59.445 33.333 0.00 0.00 0.00 1.52
177 178 7.644157 CAGCCACTTTACTCTCTTGTTTAAAAC 59.356 37.037 0.00 0.00 0.00 2.43
178 179 7.556635 AGCCACTTTACTCTCTTGTTTAAAACT 59.443 33.333 0.00 0.00 0.00 2.66
179 180 8.188799 GCCACTTTACTCTCTTGTTTAAAACTT 58.811 33.333 0.00 0.00 0.00 2.66
183 184 9.516314 CTTTACTCTCTTGTTTAAAACTTTGGG 57.484 33.333 0.00 0.00 0.00 4.12
184 185 8.584063 TTACTCTCTTGTTTAAAACTTTGGGT 57.416 30.769 0.00 0.00 0.00 4.51
185 186 6.863275 ACTCTCTTGTTTAAAACTTTGGGTG 58.137 36.000 0.00 0.00 0.00 4.61
186 187 5.656480 TCTCTTGTTTAAAACTTTGGGTGC 58.344 37.500 0.00 0.00 0.00 5.01
187 188 5.420739 TCTCTTGTTTAAAACTTTGGGTGCT 59.579 36.000 0.00 0.00 0.00 4.40
188 189 6.603997 TCTCTTGTTTAAAACTTTGGGTGCTA 59.396 34.615 0.00 0.00 0.00 3.49
189 190 6.566141 TCTTGTTTAAAACTTTGGGTGCTAC 58.434 36.000 0.00 0.00 0.00 3.58
190 191 6.378848 TCTTGTTTAAAACTTTGGGTGCTACT 59.621 34.615 0.00 0.00 0.00 2.57
191 192 6.532988 TGTTTAAAACTTTGGGTGCTACTT 57.467 33.333 0.00 0.00 0.00 2.24
192 193 6.937392 TGTTTAAAACTTTGGGTGCTACTTT 58.063 32.000 0.00 0.00 0.00 2.66
193 194 8.064336 TGTTTAAAACTTTGGGTGCTACTTTA 57.936 30.769 0.00 0.00 0.00 1.85
194 195 7.975058 TGTTTAAAACTTTGGGTGCTACTTTAC 59.025 33.333 0.00 0.00 0.00 2.01
195 196 5.524971 AAAACTTTGGGTGCTACTTTACC 57.475 39.130 0.00 0.00 36.21 2.85
196 197 3.868619 ACTTTGGGTGCTACTTTACCA 57.131 42.857 0.00 0.00 38.74 3.25
197 198 4.382386 ACTTTGGGTGCTACTTTACCAT 57.618 40.909 0.00 0.00 38.74 3.55
198 199 4.079253 ACTTTGGGTGCTACTTTACCATG 58.921 43.478 0.00 0.00 38.74 3.66
199 200 2.122783 TGGGTGCTACTTTACCATGC 57.877 50.000 0.00 0.00 38.74 4.06
200 201 1.352687 TGGGTGCTACTTTACCATGCA 59.647 47.619 0.00 0.00 38.74 3.96
201 202 2.017049 GGGTGCTACTTTACCATGCAG 58.983 52.381 0.00 0.00 38.74 4.41
202 203 2.355716 GGGTGCTACTTTACCATGCAGA 60.356 50.000 0.00 0.00 38.74 4.26
203 204 2.678336 GGTGCTACTTTACCATGCAGAC 59.322 50.000 0.00 0.00 36.94 3.51
204 205 2.348666 GTGCTACTTTACCATGCAGACG 59.651 50.000 0.00 0.00 34.15 4.18
205 206 2.028476 TGCTACTTTACCATGCAGACGT 60.028 45.455 0.00 0.00 0.00 4.34
206 207 2.603560 GCTACTTTACCATGCAGACGTC 59.396 50.000 7.70 7.70 0.00 4.34
207 208 3.676324 GCTACTTTACCATGCAGACGTCT 60.676 47.826 13.58 13.58 0.00 4.18
208 209 2.688507 ACTTTACCATGCAGACGTCTG 58.311 47.619 35.80 35.80 46.40 3.51
209 210 2.299013 ACTTTACCATGCAGACGTCTGA 59.701 45.455 42.03 28.48 46.59 3.27
210 211 3.244078 ACTTTACCATGCAGACGTCTGAA 60.244 43.478 42.03 35.71 46.59 3.02
211 212 3.610040 TTACCATGCAGACGTCTGAAT 57.390 42.857 42.03 36.22 46.59 2.57
212 213 2.015736 ACCATGCAGACGTCTGAATC 57.984 50.000 42.03 27.18 46.59 2.52
213 214 1.276138 ACCATGCAGACGTCTGAATCA 59.724 47.619 42.03 31.18 46.59 2.57
214 215 1.662629 CCATGCAGACGTCTGAATCAC 59.337 52.381 42.03 26.52 46.59 3.06
215 216 2.340337 CATGCAGACGTCTGAATCACA 58.660 47.619 42.03 30.53 46.59 3.58
216 217 2.524569 TGCAGACGTCTGAATCACAA 57.475 45.000 42.03 18.40 46.59 3.33
217 218 2.832563 TGCAGACGTCTGAATCACAAA 58.167 42.857 42.03 17.16 46.59 2.83
218 219 2.802247 TGCAGACGTCTGAATCACAAAG 59.198 45.455 42.03 17.35 46.59 2.77
219 220 2.802816 GCAGACGTCTGAATCACAAAGT 59.197 45.455 42.03 4.42 46.59 2.66
220 221 3.120854 GCAGACGTCTGAATCACAAAGTC 60.121 47.826 42.03 19.96 46.59 3.01
221 222 4.051237 CAGACGTCTGAATCACAAAGTCA 58.949 43.478 36.73 0.00 46.59 3.41
222 223 4.687948 CAGACGTCTGAATCACAAAGTCAT 59.312 41.667 36.73 0.00 46.59 3.06
223 224 5.863935 CAGACGTCTGAATCACAAAGTCATA 59.136 40.000 36.73 0.00 46.59 2.15
224 225 6.533012 CAGACGTCTGAATCACAAAGTCATAT 59.467 38.462 36.73 0.00 46.59 1.78
225 226 7.063898 CAGACGTCTGAATCACAAAGTCATATT 59.936 37.037 36.73 0.00 46.59 1.28
226 227 7.276658 AGACGTCTGAATCACAAAGTCATATTC 59.723 37.037 19.30 0.00 0.00 1.75
227 228 6.313905 ACGTCTGAATCACAAAGTCATATTCC 59.686 38.462 0.00 0.00 0.00 3.01
228 229 6.313658 CGTCTGAATCACAAAGTCATATTCCA 59.686 38.462 0.00 0.00 0.00 3.53
229 230 7.465111 CGTCTGAATCACAAAGTCATATTCCAG 60.465 40.741 0.00 0.00 0.00 3.86
230 231 6.825213 TCTGAATCACAAAGTCATATTCCAGG 59.175 38.462 0.00 0.00 0.00 4.45
231 232 5.887598 TGAATCACAAAGTCATATTCCAGGG 59.112 40.000 0.00 0.00 0.00 4.45
232 233 5.715439 ATCACAAAGTCATATTCCAGGGA 57.285 39.130 0.00 0.00 0.00 4.20
233 234 5.102953 TCACAAAGTCATATTCCAGGGAG 57.897 43.478 0.00 0.00 0.00 4.30
234 235 4.782691 TCACAAAGTCATATTCCAGGGAGA 59.217 41.667 0.00 0.00 0.00 3.71
235 236 4.878397 CACAAAGTCATATTCCAGGGAGAC 59.122 45.833 0.00 0.00 0.00 3.36
236 237 4.536090 ACAAAGTCATATTCCAGGGAGACA 59.464 41.667 7.82 0.00 0.00 3.41
237 238 5.014123 ACAAAGTCATATTCCAGGGAGACAA 59.986 40.000 7.82 0.00 0.00 3.18
238 239 5.779241 AAGTCATATTCCAGGGAGACAAA 57.221 39.130 7.82 0.00 0.00 2.83
239 240 5.104259 AGTCATATTCCAGGGAGACAAAC 57.896 43.478 7.82 0.00 0.00 2.93
240 241 3.871594 GTCATATTCCAGGGAGACAAACG 59.128 47.826 1.74 0.00 0.00 3.60
241 242 3.517901 TCATATTCCAGGGAGACAAACGT 59.482 43.478 0.00 0.00 0.00 3.99
242 243 2.474410 ATTCCAGGGAGACAAACGTC 57.526 50.000 0.00 0.00 0.00 4.34
243 244 0.395312 TTCCAGGGAGACAAACGTCC 59.605 55.000 0.00 0.00 33.60 4.79
244 245 0.471211 TCCAGGGAGACAAACGTCCT 60.471 55.000 0.00 0.00 33.60 3.85
245 246 0.037232 CCAGGGAGACAAACGTCCTC 60.037 60.000 0.00 0.00 33.60 3.71
246 247 0.037232 CAGGGAGACAAACGTCCTCC 60.037 60.000 14.26 14.26 33.60 4.30
247 248 1.192803 AGGGAGACAAACGTCCTCCC 61.193 60.000 25.51 25.51 43.81 4.30
248 249 1.295746 GGAGACAAACGTCCTCCCC 59.704 63.158 12.51 0.00 33.60 4.81
249 250 1.477685 GGAGACAAACGTCCTCCCCA 61.478 60.000 12.51 0.00 33.60 4.96
250 251 0.395312 GAGACAAACGTCCTCCCCAA 59.605 55.000 0.00 0.00 33.60 4.12
251 252 0.841289 AGACAAACGTCCTCCCCAAA 59.159 50.000 0.00 0.00 33.60 3.28
252 253 1.202770 AGACAAACGTCCTCCCCAAAG 60.203 52.381 0.00 0.00 33.60 2.77
253 254 0.549469 ACAAACGTCCTCCCCAAAGT 59.451 50.000 0.00 0.00 0.00 2.66
254 255 1.235724 CAAACGTCCTCCCCAAAGTC 58.764 55.000 0.00 0.00 0.00 3.01
255 256 1.137697 AAACGTCCTCCCCAAAGTCT 58.862 50.000 0.00 0.00 0.00 3.24
256 257 0.396811 AACGTCCTCCCCAAAGTCTG 59.603 55.000 0.00 0.00 0.00 3.51
257 258 0.471211 ACGTCCTCCCCAAAGTCTGA 60.471 55.000 0.00 0.00 0.00 3.27
258 259 0.905357 CGTCCTCCCCAAAGTCTGAT 59.095 55.000 0.00 0.00 0.00 2.90
259 260 1.406069 CGTCCTCCCCAAAGTCTGATG 60.406 57.143 0.00 0.00 0.00 3.07
260 261 1.065126 GTCCTCCCCAAAGTCTGATGG 60.065 57.143 0.00 0.00 36.42 3.51
261 262 0.394899 CCTCCCCAAAGTCTGATGGC 60.395 60.000 0.25 0.00 35.28 4.40
262 263 0.622665 CTCCCCAAAGTCTGATGGCT 59.377 55.000 0.25 0.00 35.28 4.75
263 264 1.005215 CTCCCCAAAGTCTGATGGCTT 59.995 52.381 0.25 0.00 35.28 4.35
264 265 1.004745 TCCCCAAAGTCTGATGGCTTC 59.995 52.381 0.25 0.00 35.28 3.86
265 266 1.272092 CCCCAAAGTCTGATGGCTTCA 60.272 52.381 2.86 2.86 35.28 3.02
266 267 1.815003 CCCAAAGTCTGATGGCTTCAC 59.185 52.381 0.00 0.00 35.28 3.18
267 268 1.466167 CCAAAGTCTGATGGCTTCACG 59.534 52.381 0.00 0.00 0.00 4.35
268 269 2.146342 CAAAGTCTGATGGCTTCACGT 58.854 47.619 0.00 0.00 0.00 4.49
269 270 2.086054 AAGTCTGATGGCTTCACGTC 57.914 50.000 0.00 0.00 0.00 4.34
270 271 0.969149 AGTCTGATGGCTTCACGTCA 59.031 50.000 0.00 0.00 35.27 4.35
271 272 1.071605 GTCTGATGGCTTCACGTCAC 58.928 55.000 0.00 0.00 33.16 3.67
272 273 0.678950 TCTGATGGCTTCACGTCACA 59.321 50.000 0.00 0.00 33.16 3.58
273 274 1.276138 TCTGATGGCTTCACGTCACAT 59.724 47.619 0.00 0.00 33.16 3.21
274 275 2.079158 CTGATGGCTTCACGTCACATT 58.921 47.619 0.00 0.00 33.16 2.71
275 276 3.056179 TCTGATGGCTTCACGTCACATTA 60.056 43.478 0.00 0.00 33.16 1.90
276 277 3.000041 TGATGGCTTCACGTCACATTAC 59.000 45.455 0.00 0.00 31.76 1.89
293 294 4.270392 CGTTGTACGTGGCATCCA 57.730 55.556 0.00 0.00 36.74 3.41
302 303 3.770040 TGGCATCCACCTCGTCCG 61.770 66.667 0.00 0.00 0.00 4.79
303 304 4.530857 GGCATCCACCTCGTCCGG 62.531 72.222 0.00 0.00 0.00 5.14
304 305 3.458163 GCATCCACCTCGTCCGGA 61.458 66.667 0.00 0.00 0.00 5.14
305 306 3.014085 GCATCCACCTCGTCCGGAA 62.014 63.158 5.23 0.00 31.18 4.30
306 307 1.594833 CATCCACCTCGTCCGGAAA 59.405 57.895 5.23 0.00 31.18 3.13
307 308 0.036765 CATCCACCTCGTCCGGAAAA 60.037 55.000 5.23 0.00 31.18 2.29
308 309 0.249398 ATCCACCTCGTCCGGAAAAG 59.751 55.000 5.23 6.54 31.18 2.27
309 310 1.375523 CCACCTCGTCCGGAAAAGG 60.376 63.158 25.07 25.07 34.94 3.11
310 311 2.033194 CACCTCGTCCGGAAAAGGC 61.033 63.158 26.12 6.15 31.79 4.35
311 312 2.436115 CCTCGTCCGGAAAAGGCC 60.436 66.667 17.93 0.00 0.00 5.19
312 313 2.345991 CTCGTCCGGAAAAGGCCA 59.654 61.111 5.23 0.00 0.00 5.36
313 314 1.302192 CTCGTCCGGAAAAGGCCAA 60.302 57.895 5.23 0.00 0.00 4.52
314 315 1.298859 CTCGTCCGGAAAAGGCCAAG 61.299 60.000 5.23 0.00 0.00 3.61
315 316 1.599797 CGTCCGGAAAAGGCCAAGT 60.600 57.895 5.23 0.00 0.00 3.16
316 317 1.852067 CGTCCGGAAAAGGCCAAGTG 61.852 60.000 5.23 0.00 0.00 3.16
317 318 1.901464 TCCGGAAAAGGCCAAGTGC 60.901 57.895 5.01 0.00 40.16 4.40
318 319 2.199652 CCGGAAAAGGCCAAGTGCA 61.200 57.895 5.01 0.00 43.89 4.57
319 320 1.286880 CGGAAAAGGCCAAGTGCAG 59.713 57.895 5.01 0.00 43.89 4.41
320 321 1.667722 GGAAAAGGCCAAGTGCAGG 59.332 57.895 5.01 0.00 43.89 4.85
321 322 1.667722 GAAAAGGCCAAGTGCAGGG 59.332 57.895 5.01 0.00 43.89 4.45
326 327 4.982701 GCCAAGTGCAGGGCCTGT 62.983 66.667 32.80 12.53 44.53 4.00
327 328 2.674380 CCAAGTGCAGGGCCTGTC 60.674 66.667 32.80 24.55 33.43 3.51
328 329 2.113774 CAAGTGCAGGGCCTGTCA 59.886 61.111 32.80 26.67 33.43 3.58
329 330 1.970114 CAAGTGCAGGGCCTGTCAG 60.970 63.158 32.80 18.27 33.43 3.51
330 331 3.857309 AAGTGCAGGGCCTGTCAGC 62.857 63.158 32.80 20.11 33.43 4.26
338 339 4.481195 GCCTGTCAGCCAGTCAAA 57.519 55.556 0.00 0.00 39.74 2.69
339 340 2.952714 GCCTGTCAGCCAGTCAAAT 58.047 52.632 0.00 0.00 39.74 2.32
340 341 0.524862 GCCTGTCAGCCAGTCAAATG 59.475 55.000 0.00 0.00 39.74 2.32
341 342 0.524862 CCTGTCAGCCAGTCAAATGC 59.475 55.000 0.00 0.00 39.74 3.56
342 343 1.241165 CTGTCAGCCAGTCAAATGCA 58.759 50.000 0.00 0.00 36.37 3.96
343 344 1.610038 CTGTCAGCCAGTCAAATGCAA 59.390 47.619 0.00 0.00 36.37 4.08
344 345 1.337703 TGTCAGCCAGTCAAATGCAAC 59.662 47.619 0.00 0.00 0.00 4.17
345 346 1.337703 GTCAGCCAGTCAAATGCAACA 59.662 47.619 0.00 0.00 0.00 3.33
346 347 1.610038 TCAGCCAGTCAAATGCAACAG 59.390 47.619 0.00 0.00 0.00 3.16
347 348 1.610038 CAGCCAGTCAAATGCAACAGA 59.390 47.619 0.00 0.00 0.00 3.41
348 349 2.230508 CAGCCAGTCAAATGCAACAGAT 59.769 45.455 0.00 0.00 0.00 2.90
349 350 2.230508 AGCCAGTCAAATGCAACAGATG 59.769 45.455 0.00 0.00 0.00 2.90
350 351 2.229543 GCCAGTCAAATGCAACAGATGA 59.770 45.455 0.00 0.00 0.00 2.92
351 352 3.119245 GCCAGTCAAATGCAACAGATGAT 60.119 43.478 0.00 0.00 0.00 2.45
352 353 4.669318 CCAGTCAAATGCAACAGATGATC 58.331 43.478 0.00 0.00 0.00 2.92
353 354 4.157105 CCAGTCAAATGCAACAGATGATCA 59.843 41.667 0.00 0.00 0.00 2.92
354 355 5.332707 CAGTCAAATGCAACAGATGATCAG 58.667 41.667 0.09 0.00 0.00 2.90
355 356 5.008331 AGTCAAATGCAACAGATGATCAGT 58.992 37.500 0.09 0.00 0.00 3.41
356 357 5.475909 AGTCAAATGCAACAGATGATCAGTT 59.524 36.000 0.09 0.00 0.00 3.16
357 358 6.015688 AGTCAAATGCAACAGATGATCAGTTT 60.016 34.615 0.09 0.00 0.00 2.66
358 359 6.307318 GTCAAATGCAACAGATGATCAGTTTC 59.693 38.462 0.09 0.00 0.00 2.78
359 360 5.970317 AATGCAACAGATGATCAGTTTCA 57.030 34.783 5.65 5.65 0.00 2.69
360 361 4.754372 TGCAACAGATGATCAGTTTCAC 57.246 40.909 0.09 0.00 0.00 3.18
361 362 3.503363 TGCAACAGATGATCAGTTTCACC 59.497 43.478 0.09 0.00 0.00 4.02
362 363 3.425359 GCAACAGATGATCAGTTTCACCG 60.425 47.826 0.09 0.00 0.00 4.94
363 364 3.961480 ACAGATGATCAGTTTCACCGA 57.039 42.857 0.09 0.00 0.00 4.69
364 365 3.589988 ACAGATGATCAGTTTCACCGAC 58.410 45.455 0.09 0.00 0.00 4.79
365 366 3.006859 ACAGATGATCAGTTTCACCGACA 59.993 43.478 0.09 0.00 0.00 4.35
366 367 3.996363 CAGATGATCAGTTTCACCGACAA 59.004 43.478 0.09 0.00 0.00 3.18
367 368 4.633126 CAGATGATCAGTTTCACCGACAAT 59.367 41.667 0.09 0.00 0.00 2.71
368 369 5.812127 CAGATGATCAGTTTCACCGACAATA 59.188 40.000 0.09 0.00 0.00 1.90
369 370 5.812642 AGATGATCAGTTTCACCGACAATAC 59.187 40.000 0.09 0.00 0.00 1.89
370 371 4.888917 TGATCAGTTTCACCGACAATACA 58.111 39.130 0.00 0.00 0.00 2.29
371 372 4.929211 TGATCAGTTTCACCGACAATACAG 59.071 41.667 0.00 0.00 0.00 2.74
372 373 3.064207 TCAGTTTCACCGACAATACAGC 58.936 45.455 0.00 0.00 0.00 4.40
373 374 2.805671 CAGTTTCACCGACAATACAGCA 59.194 45.455 0.00 0.00 0.00 4.41
374 375 3.067106 AGTTTCACCGACAATACAGCAG 58.933 45.455 0.00 0.00 0.00 4.24
375 376 3.064207 GTTTCACCGACAATACAGCAGA 58.936 45.455 0.00 0.00 0.00 4.26
376 377 2.654749 TCACCGACAATACAGCAGAG 57.345 50.000 0.00 0.00 0.00 3.35
377 378 2.167662 TCACCGACAATACAGCAGAGA 58.832 47.619 0.00 0.00 0.00 3.10
378 379 2.560981 TCACCGACAATACAGCAGAGAA 59.439 45.455 0.00 0.00 0.00 2.87
379 380 3.006430 TCACCGACAATACAGCAGAGAAA 59.994 43.478 0.00 0.00 0.00 2.52
380 381 3.935203 CACCGACAATACAGCAGAGAAAT 59.065 43.478 0.00 0.00 0.00 2.17
381 382 4.033358 CACCGACAATACAGCAGAGAAATC 59.967 45.833 0.00 0.00 0.00 2.17
382 383 4.183865 CCGACAATACAGCAGAGAAATCA 58.816 43.478 0.00 0.00 0.00 2.57
383 384 4.813161 CCGACAATACAGCAGAGAAATCAT 59.187 41.667 0.00 0.00 0.00 2.45
384 385 5.277202 CCGACAATACAGCAGAGAAATCATG 60.277 44.000 0.00 0.00 0.00 3.07
385 386 5.292834 CGACAATACAGCAGAGAAATCATGT 59.707 40.000 0.00 0.00 0.00 3.21
386 387 6.432607 ACAATACAGCAGAGAAATCATGTG 57.567 37.500 0.00 0.00 0.00 3.21
387 388 5.163683 ACAATACAGCAGAGAAATCATGTGC 60.164 40.000 0.00 0.00 0.00 4.57
388 389 1.736126 ACAGCAGAGAAATCATGTGCG 59.264 47.619 0.00 0.00 39.19 5.34
389 390 0.731417 AGCAGAGAAATCATGTGCGC 59.269 50.000 0.00 0.00 39.19 6.09
390 391 0.731417 GCAGAGAAATCATGTGCGCT 59.269 50.000 9.73 0.00 0.00 5.92
391 392 1.531264 GCAGAGAAATCATGTGCGCTG 60.531 52.381 9.73 0.00 0.00 5.18
392 393 0.731417 AGAGAAATCATGTGCGCTGC 59.269 50.000 9.73 1.68 0.00 5.25
393 394 0.248377 GAGAAATCATGTGCGCTGCC 60.248 55.000 9.73 0.00 0.00 4.85
394 395 0.961857 AGAAATCATGTGCGCTGCCA 60.962 50.000 9.73 2.81 0.00 4.92
395 396 0.101759 GAAATCATGTGCGCTGCCAT 59.898 50.000 9.73 5.40 0.00 4.40
396 397 0.101759 AAATCATGTGCGCTGCCATC 59.898 50.000 9.73 0.00 0.00 3.51
397 398 1.731433 AATCATGTGCGCTGCCATCC 61.731 55.000 9.73 0.00 0.00 3.51
398 399 2.897172 ATCATGTGCGCTGCCATCCA 62.897 55.000 9.73 0.00 0.00 3.41
399 400 2.124024 ATGTGCGCTGCCATCCAT 60.124 55.556 9.73 0.00 0.00 3.41
400 401 2.191513 ATGTGCGCTGCCATCCATC 61.192 57.895 9.73 0.00 0.00 3.51
401 402 3.945434 GTGCGCTGCCATCCATCG 61.945 66.667 9.73 0.00 36.23 3.84
402 403 4.471908 TGCGCTGCCATCCATCGT 62.472 61.111 9.73 0.00 35.61 3.73
403 404 2.280119 GCGCTGCCATCCATCGTA 60.280 61.111 0.00 0.00 35.61 3.43
404 405 1.887242 GCGCTGCCATCCATCGTAA 60.887 57.895 0.00 0.00 35.61 3.18
405 406 1.436195 GCGCTGCCATCCATCGTAAA 61.436 55.000 0.00 0.00 35.61 2.01
406 407 1.229428 CGCTGCCATCCATCGTAAAT 58.771 50.000 0.00 0.00 0.00 1.40
407 408 2.412870 CGCTGCCATCCATCGTAAATA 58.587 47.619 0.00 0.00 0.00 1.40
408 409 2.805671 CGCTGCCATCCATCGTAAATAA 59.194 45.455 0.00 0.00 0.00 1.40
409 410 3.120546 CGCTGCCATCCATCGTAAATAAG 60.121 47.826 0.00 0.00 0.00 1.73
410 411 4.065088 GCTGCCATCCATCGTAAATAAGA 58.935 43.478 0.00 0.00 0.00 2.10
411 412 4.153117 GCTGCCATCCATCGTAAATAAGAG 59.847 45.833 0.00 0.00 0.00 2.85
412 413 5.290493 TGCCATCCATCGTAAATAAGAGT 57.710 39.130 0.00 0.00 0.00 3.24
413 414 6.413783 TGCCATCCATCGTAAATAAGAGTA 57.586 37.500 0.00 0.00 0.00 2.59
414 415 7.004555 TGCCATCCATCGTAAATAAGAGTAT 57.995 36.000 0.00 0.00 0.00 2.12
415 416 7.450074 TGCCATCCATCGTAAATAAGAGTATT 58.550 34.615 0.00 0.00 0.00 1.89
416 417 7.387673 TGCCATCCATCGTAAATAAGAGTATTG 59.612 37.037 0.00 0.00 30.04 1.90
417 418 7.624344 GCCATCCATCGTAAATAAGAGTATTGC 60.624 40.741 0.00 0.00 30.04 3.56
418 419 7.387673 CCATCCATCGTAAATAAGAGTATTGCA 59.612 37.037 0.00 0.00 30.04 4.08
419 420 8.939929 CATCCATCGTAAATAAGAGTATTGCAT 58.060 33.333 0.00 0.00 30.04 3.96
420 421 8.310406 TCCATCGTAAATAAGAGTATTGCATG 57.690 34.615 0.00 0.00 30.04 4.06
421 422 7.017645 CCATCGTAAATAAGAGTATTGCATGC 58.982 38.462 11.82 11.82 30.04 4.06
422 423 7.307930 CCATCGTAAATAAGAGTATTGCATGCA 60.308 37.037 18.46 18.46 30.04 3.96
423 424 7.177498 TCGTAAATAAGAGTATTGCATGCAG 57.823 36.000 21.50 3.25 30.04 4.41
424 425 6.983890 TCGTAAATAAGAGTATTGCATGCAGA 59.016 34.615 21.50 12.42 30.04 4.26
425 426 7.494298 TCGTAAATAAGAGTATTGCATGCAGAA 59.506 33.333 21.50 7.62 30.04 3.02
426 427 8.122330 CGTAAATAAGAGTATTGCATGCAGAAA 58.878 33.333 21.50 6.77 30.04 2.52
427 428 9.787532 GTAAATAAGAGTATTGCATGCAGAAAA 57.212 29.630 21.50 6.34 30.04 2.29
428 429 8.693542 AAATAAGAGTATTGCATGCAGAAAAC 57.306 30.769 21.50 16.35 30.04 2.43
429 430 5.710513 AAGAGTATTGCATGCAGAAAACA 57.289 34.783 21.50 5.06 0.00 2.83
430 431 5.710513 AGAGTATTGCATGCAGAAAACAA 57.289 34.783 21.50 4.23 0.00 2.83
431 432 6.088016 AGAGTATTGCATGCAGAAAACAAA 57.912 33.333 21.50 3.38 0.00 2.83
432 433 6.154445 AGAGTATTGCATGCAGAAAACAAAG 58.846 36.000 21.50 0.00 0.00 2.77
433 434 6.016024 AGAGTATTGCATGCAGAAAACAAAGA 60.016 34.615 21.50 1.72 0.00 2.52
434 435 6.694447 AGTATTGCATGCAGAAAACAAAGAT 58.306 32.000 21.50 9.79 0.00 2.40
435 436 6.810182 AGTATTGCATGCAGAAAACAAAGATC 59.190 34.615 21.50 2.52 0.00 2.75
436 437 4.587584 TGCATGCAGAAAACAAAGATCA 57.412 36.364 18.46 0.00 0.00 2.92
437 438 4.946445 TGCATGCAGAAAACAAAGATCAA 58.054 34.783 18.46 0.00 0.00 2.57
438 439 4.746115 TGCATGCAGAAAACAAAGATCAAC 59.254 37.500 18.46 0.00 0.00 3.18
439 440 4.151157 GCATGCAGAAAACAAAGATCAACC 59.849 41.667 14.21 0.00 0.00 3.77
440 441 5.535333 CATGCAGAAAACAAAGATCAACCT 58.465 37.500 0.00 0.00 0.00 3.50
441 442 4.935702 TGCAGAAAACAAAGATCAACCTG 58.064 39.130 0.00 0.00 0.00 4.00
442 443 4.202141 TGCAGAAAACAAAGATCAACCTGG 60.202 41.667 0.00 0.00 0.00 4.45
443 444 4.301628 CAGAAAACAAAGATCAACCTGGC 58.698 43.478 0.00 0.00 0.00 4.85
444 445 3.004734 AGAAAACAAAGATCAACCTGGCG 59.995 43.478 0.00 0.00 0.00 5.69
445 446 1.981256 AACAAAGATCAACCTGGCGT 58.019 45.000 0.00 0.00 0.00 5.68
446 447 2.851263 ACAAAGATCAACCTGGCGTA 57.149 45.000 0.00 0.00 0.00 4.42
447 448 2.699954 ACAAAGATCAACCTGGCGTAG 58.300 47.619 0.00 0.00 0.00 3.51
448 449 2.038557 ACAAAGATCAACCTGGCGTAGT 59.961 45.455 0.00 0.00 0.00 2.73
449 450 3.259876 ACAAAGATCAACCTGGCGTAGTA 59.740 43.478 0.00 0.00 0.00 1.82
450 451 4.081087 ACAAAGATCAACCTGGCGTAGTAT 60.081 41.667 0.00 0.00 0.00 2.12
451 452 4.323553 AAGATCAACCTGGCGTAGTATC 57.676 45.455 0.00 0.00 0.00 2.24
452 453 2.628657 AGATCAACCTGGCGTAGTATCC 59.371 50.000 0.00 0.00 0.00 2.59
453 454 1.855295 TCAACCTGGCGTAGTATCCA 58.145 50.000 0.00 0.00 0.00 3.41
454 455 1.479323 TCAACCTGGCGTAGTATCCAC 59.521 52.381 0.00 0.00 0.00 4.02
455 456 1.206132 CAACCTGGCGTAGTATCCACA 59.794 52.381 0.00 0.00 0.00 4.17
456 457 1.789523 ACCTGGCGTAGTATCCACAT 58.210 50.000 0.00 0.00 0.00 3.21
457 458 2.116238 ACCTGGCGTAGTATCCACATT 58.884 47.619 0.00 0.00 0.00 2.71
458 459 3.302161 ACCTGGCGTAGTATCCACATTA 58.698 45.455 0.00 0.00 0.00 1.90
459 460 3.321111 ACCTGGCGTAGTATCCACATTAG 59.679 47.826 0.00 0.00 0.00 1.73
460 461 3.318017 CTGGCGTAGTATCCACATTAGC 58.682 50.000 0.00 0.00 0.00 3.09
461 462 2.036733 TGGCGTAGTATCCACATTAGCC 59.963 50.000 0.00 0.00 42.11 3.93
462 463 2.036733 GGCGTAGTATCCACATTAGCCA 59.963 50.000 0.00 0.00 41.46 4.75
463 464 3.057734 GCGTAGTATCCACATTAGCCAC 58.942 50.000 0.00 0.00 0.00 5.01
464 465 3.650139 CGTAGTATCCACATTAGCCACC 58.350 50.000 0.00 0.00 0.00 4.61
465 466 2.910688 AGTATCCACATTAGCCACCG 57.089 50.000 0.00 0.00 0.00 4.94
466 467 2.394632 AGTATCCACATTAGCCACCGA 58.605 47.619 0.00 0.00 0.00 4.69
467 468 2.769663 AGTATCCACATTAGCCACCGAA 59.230 45.455 0.00 0.00 0.00 4.30
468 469 2.332063 ATCCACATTAGCCACCGAAG 57.668 50.000 0.00 0.00 0.00 3.79
469 470 1.271856 TCCACATTAGCCACCGAAGA 58.728 50.000 0.00 0.00 0.00 2.87
470 471 1.207089 TCCACATTAGCCACCGAAGAG 59.793 52.381 0.00 0.00 0.00 2.85
472 473 1.207089 CACATTAGCCACCGAAGAGGA 59.793 52.381 0.00 0.00 45.00 3.71
473 474 1.482593 ACATTAGCCACCGAAGAGGAG 59.517 52.381 0.00 0.00 45.00 3.69
481 482 3.289525 CGAAGAGGAGGCGGACTT 58.710 61.111 0.00 0.00 0.00 3.01
482 483 1.153745 CGAAGAGGAGGCGGACTTG 60.154 63.158 0.00 0.00 0.00 3.16
483 484 1.448717 GAAGAGGAGGCGGACTTGC 60.449 63.158 0.00 0.00 0.00 4.01
484 485 3.302347 AAGAGGAGGCGGACTTGCG 62.302 63.158 0.00 0.00 35.06 4.85
485 486 3.760035 GAGGAGGCGGACTTGCGA 61.760 66.667 0.00 0.00 35.06 5.10
486 487 3.991536 GAGGAGGCGGACTTGCGAC 62.992 68.421 0.00 0.00 35.06 5.19
508 509 3.053896 CCGACGGGAGGCCAAAAC 61.054 66.667 5.01 0.00 34.06 2.43
509 510 3.053896 CGACGGGAGGCCAAAACC 61.054 66.667 5.01 2.26 0.00 3.27
510 511 2.675423 GACGGGAGGCCAAAACCC 60.675 66.667 5.01 11.36 40.17 4.11
511 512 3.182996 ACGGGAGGCCAAAACCCT 61.183 61.111 19.77 8.67 41.28 4.34
512 513 1.844544 GACGGGAGGCCAAAACCCTA 61.845 60.000 19.77 0.00 41.28 3.53
513 514 1.077716 CGGGAGGCCAAAACCCTAG 60.078 63.158 19.77 6.74 41.28 3.02
514 515 1.379977 GGGAGGCCAAAACCCTAGC 60.380 63.158 5.01 0.00 40.39 3.42
515 516 1.691823 GGAGGCCAAAACCCTAGCT 59.308 57.895 5.01 0.00 31.41 3.32
516 517 0.039764 GGAGGCCAAAACCCTAGCTT 59.960 55.000 5.01 0.00 31.41 3.74
517 518 1.550179 GGAGGCCAAAACCCTAGCTTT 60.550 52.381 5.01 0.00 31.41 3.51
518 519 2.248248 GAGGCCAAAACCCTAGCTTTT 58.752 47.619 5.01 0.00 31.41 2.27
519 520 2.632996 GAGGCCAAAACCCTAGCTTTTT 59.367 45.455 5.01 0.00 31.41 1.94
536 537 1.362224 TTTTGTGGAGGAGGAGGAGG 58.638 55.000 0.00 0.00 0.00 4.30
537 538 1.201429 TTTGTGGAGGAGGAGGAGGC 61.201 60.000 0.00 0.00 0.00 4.70
538 539 3.151022 GTGGAGGAGGAGGAGGCG 61.151 72.222 0.00 0.00 0.00 5.52
539 540 4.465446 TGGAGGAGGAGGAGGCGG 62.465 72.222 0.00 0.00 0.00 6.13
542 543 4.722535 AGGAGGAGGAGGCGGCAA 62.723 66.667 13.08 0.00 0.00 4.52
543 544 4.475135 GGAGGAGGAGGCGGCAAC 62.475 72.222 13.08 2.78 0.00 4.17
556 557 3.280920 GGCAACGGCTAGAGATGAG 57.719 57.895 0.00 0.00 40.87 2.90
557 558 0.878086 GGCAACGGCTAGAGATGAGC 60.878 60.000 0.00 0.00 40.87 4.26
563 564 2.727103 GCTAGAGATGAGCCCGAGT 58.273 57.895 0.00 0.00 33.60 4.18
564 565 1.898902 GCTAGAGATGAGCCCGAGTA 58.101 55.000 0.00 0.00 33.60 2.59
565 566 1.810151 GCTAGAGATGAGCCCGAGTAG 59.190 57.143 0.00 0.00 33.60 2.57
566 567 1.810151 CTAGAGATGAGCCCGAGTAGC 59.190 57.143 0.00 0.00 0.00 3.58
567 568 0.106469 AGAGATGAGCCCGAGTAGCA 60.106 55.000 0.00 0.00 0.00 3.49
568 569 0.313672 GAGATGAGCCCGAGTAGCAG 59.686 60.000 0.00 0.00 0.00 4.24
569 570 1.300542 GATGAGCCCGAGTAGCAGC 60.301 63.158 0.00 0.00 0.00 5.25
570 571 3.144120 ATGAGCCCGAGTAGCAGCG 62.144 63.158 0.00 0.00 0.00 5.18
582 583 2.196997 TAGCAGCGCAGGACCCATTT 62.197 55.000 11.47 0.00 0.00 2.32
614 615 2.632377 ACCGCTTTGACTATGTCCATG 58.368 47.619 0.00 0.00 0.00 3.66
616 617 2.352651 CCGCTTTGACTATGTCCATGTG 59.647 50.000 0.00 0.00 0.00 3.21
624 625 3.461061 ACTATGTCCATGTGAGCGAATG 58.539 45.455 0.00 0.00 0.00 2.67
625 626 1.671979 ATGTCCATGTGAGCGAATGG 58.328 50.000 0.00 4.25 44.06 3.16
644 645 3.210227 TGGCTCGAACAAACTCATCAAA 58.790 40.909 0.00 0.00 0.00 2.69
646 647 3.498397 GGCTCGAACAAACTCATCAAAGA 59.502 43.478 0.00 0.00 0.00 2.52
652 653 8.148807 TCGAACAAACTCATCAAAGAATTACA 57.851 30.769 0.00 0.00 0.00 2.41
710 726 5.105877 CGTCTTATATTATGGAGCGAAGGGA 60.106 44.000 0.00 0.00 0.00 4.20
724 770 6.031751 AGCGAAGGGAGTATTGAATAGATC 57.968 41.667 0.00 0.00 0.00 2.75
738 784 6.992063 TGAATAGATCAAGGAGAAACAAGC 57.008 37.500 0.00 0.00 34.30 4.01
743 789 5.319453 AGATCAAGGAGAAACAAGCATCAA 58.681 37.500 0.00 0.00 0.00 2.57
744 790 5.950549 AGATCAAGGAGAAACAAGCATCAAT 59.049 36.000 0.00 0.00 0.00 2.57
770 824 3.500343 CAACCATTTTCTTCAGGGGAGT 58.500 45.455 0.00 0.00 0.00 3.85
786 840 2.288395 GGGAGTTGTTGGACATTTGCTG 60.288 50.000 0.00 0.00 0.00 4.41
825 879 3.124921 CGCCAAAATCCGACGGCT 61.125 61.111 9.66 0.00 42.59 5.52
826 880 1.812093 CGCCAAAATCCGACGGCTA 60.812 57.895 9.66 0.00 42.59 3.93
827 881 1.762222 CGCCAAAATCCGACGGCTAG 61.762 60.000 9.66 0.00 42.59 3.42
828 882 2.014594 CCAAAATCCGACGGCTAGC 58.985 57.895 9.66 6.04 0.00 3.42
829 883 1.636340 CAAAATCCGACGGCTAGCG 59.364 57.895 9.66 6.83 0.00 4.26
830 884 2.171725 AAAATCCGACGGCTAGCGC 61.172 57.895 9.66 0.00 0.00 5.92
910 964 4.838486 CGACGCTCGCTCACTCCC 62.838 72.222 0.00 0.00 31.14 4.30
1046 1109 2.360980 CGTCTCCCACCTCCTCCT 59.639 66.667 0.00 0.00 0.00 3.69
1049 1112 2.443016 CTCCCACCTCCTCCTCGG 60.443 72.222 0.00 0.00 0.00 4.63
1067 1130 3.680786 GCCGAAACCCAAGCCCAC 61.681 66.667 0.00 0.00 0.00 4.61
1611 1674 0.323816 TCATCTGCCAGGTCGAGACT 60.324 55.000 3.09 0.00 0.00 3.24
1768 1831 1.220477 GAGGCTGAGAGGAAGGTGC 59.780 63.158 0.00 0.00 0.00 5.01
1801 1864 3.302347 AAGAAGGACGCTGCTCCGG 62.302 63.158 0.00 0.00 35.20 5.14
1930 1993 2.272146 GGAAGGCGGCATTGGAGA 59.728 61.111 13.08 0.00 0.00 3.71
2048 2125 0.038166 GGGAACTGGTGATGGCTTCA 59.962 55.000 0.00 0.00 0.00 3.02
2126 2203 7.009357 GGTGTACTCTTGTTTAGTCGATGATTC 59.991 40.741 0.00 0.00 0.00 2.52
2188 2265 3.132111 CCCATTTGTAGGTGGTAATTGGC 59.868 47.826 0.00 0.00 33.55 4.52
2235 2312 0.110056 GTGAAATGCTGCTGTGTCCG 60.110 55.000 0.00 0.00 0.00 4.79
2365 2448 2.217750 GGTGAATTTGTTTTGTGGGGC 58.782 47.619 0.00 0.00 0.00 5.80
2863 2947 1.080638 TCTTGGCATGTTAACCCCCT 58.919 50.000 2.48 0.00 0.00 4.79
2980 3064 8.870160 TGCATTAAACATATATGAAAGGTTGC 57.130 30.769 19.63 17.78 0.00 4.17
2981 3065 8.694540 TGCATTAAACATATATGAAAGGTTGCT 58.305 29.630 19.63 0.00 0.00 3.91
2982 3066 8.971321 GCATTAAACATATATGAAAGGTTGCTG 58.029 33.333 19.63 6.02 0.00 4.41
2983 3067 8.971321 CATTAAACATATATGAAAGGTTGCTGC 58.029 33.333 19.63 0.00 0.00 5.25
2984 3068 6.528537 AAACATATATGAAAGGTTGCTGCA 57.471 33.333 19.63 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.176896 AGCTTCTAGAAGGTTTCAAAGGATC 58.823 40.000 27.47 9.88 45.80 3.36
1 2 6.133253 AGCTTCTAGAAGGTTTCAAAGGAT 57.867 37.500 27.47 0.00 45.80 3.24
2 3 5.568620 AGCTTCTAGAAGGTTTCAAAGGA 57.431 39.130 27.47 0.00 45.80 3.36
12 13 3.731264 CGTACCGTGAAGCTTCTAGAAGG 60.731 52.174 29.22 19.10 38.80 3.46
13 14 3.119919 ACGTACCGTGAAGCTTCTAGAAG 60.120 47.826 25.42 25.42 39.18 2.85
14 15 2.816087 ACGTACCGTGAAGCTTCTAGAA 59.184 45.455 26.09 4.81 39.18 2.10
15 16 2.417933 GACGTACCGTGAAGCTTCTAGA 59.582 50.000 26.09 4.36 41.37 2.43
16 17 2.477525 GGACGTACCGTGAAGCTTCTAG 60.478 54.545 26.09 18.73 41.37 2.43
17 18 1.470098 GGACGTACCGTGAAGCTTCTA 59.530 52.381 26.09 10.83 41.37 2.10
18 19 0.243095 GGACGTACCGTGAAGCTTCT 59.757 55.000 26.09 9.45 41.37 2.85
19 20 0.038892 TGGACGTACCGTGAAGCTTC 60.039 55.000 19.89 19.89 41.37 3.86
20 21 0.606604 ATGGACGTACCGTGAAGCTT 59.393 50.000 0.00 0.00 41.37 3.74
21 22 0.606604 AATGGACGTACCGTGAAGCT 59.393 50.000 0.00 0.00 41.37 3.74
22 23 1.392510 GAAATGGACGTACCGTGAAGC 59.607 52.381 0.00 0.00 41.37 3.86
23 24 2.666508 CAGAAATGGACGTACCGTGAAG 59.333 50.000 0.00 0.00 41.37 3.02
24 25 2.036217 ACAGAAATGGACGTACCGTGAA 59.964 45.455 0.00 0.00 41.37 3.18
25 26 1.614903 ACAGAAATGGACGTACCGTGA 59.385 47.619 0.00 0.00 41.37 4.35
26 27 2.074547 ACAGAAATGGACGTACCGTG 57.925 50.000 0.00 0.00 41.37 4.94
27 28 2.825861 AACAGAAATGGACGTACCGT 57.174 45.000 0.00 0.00 45.10 4.83
28 29 3.744426 AGAAAACAGAAATGGACGTACCG 59.256 43.478 0.00 0.00 42.61 4.02
29 30 4.143179 CGAGAAAACAGAAATGGACGTACC 60.143 45.833 0.00 0.00 39.54 3.34
30 31 4.446719 ACGAGAAAACAGAAATGGACGTAC 59.553 41.667 0.00 0.00 0.00 3.67
31 32 4.624015 ACGAGAAAACAGAAATGGACGTA 58.376 39.130 0.00 0.00 0.00 3.57
32 33 3.463944 ACGAGAAAACAGAAATGGACGT 58.536 40.909 0.00 0.00 0.00 4.34
33 34 4.025229 TGAACGAGAAAACAGAAATGGACG 60.025 41.667 0.00 0.00 0.00 4.79
34 35 5.418310 TGAACGAGAAAACAGAAATGGAC 57.582 39.130 0.00 0.00 0.00 4.02
35 36 6.437928 CAATGAACGAGAAAACAGAAATGGA 58.562 36.000 0.00 0.00 0.00 3.41
36 37 5.630680 CCAATGAACGAGAAAACAGAAATGG 59.369 40.000 0.00 0.00 0.00 3.16
37 38 6.208644 ACCAATGAACGAGAAAACAGAAATG 58.791 36.000 0.00 0.00 0.00 2.32
38 39 6.263168 AGACCAATGAACGAGAAAACAGAAAT 59.737 34.615 0.00 0.00 0.00 2.17
39 40 5.588648 AGACCAATGAACGAGAAAACAGAAA 59.411 36.000 0.00 0.00 0.00 2.52
40 41 5.007626 CAGACCAATGAACGAGAAAACAGAA 59.992 40.000 0.00 0.00 0.00 3.02
41 42 4.511454 CAGACCAATGAACGAGAAAACAGA 59.489 41.667 0.00 0.00 0.00 3.41
42 43 4.319766 CCAGACCAATGAACGAGAAAACAG 60.320 45.833 0.00 0.00 0.00 3.16
43 44 3.563808 CCAGACCAATGAACGAGAAAACA 59.436 43.478 0.00 0.00 0.00 2.83
44 45 3.609409 GCCAGACCAATGAACGAGAAAAC 60.609 47.826 0.00 0.00 0.00 2.43
45 46 2.552315 GCCAGACCAATGAACGAGAAAA 59.448 45.455 0.00 0.00 0.00 2.29
46 47 2.151202 GCCAGACCAATGAACGAGAAA 58.849 47.619 0.00 0.00 0.00 2.52
47 48 1.808411 GCCAGACCAATGAACGAGAA 58.192 50.000 0.00 0.00 0.00 2.87
48 49 0.389817 CGCCAGACCAATGAACGAGA 60.390 55.000 0.00 0.00 0.00 4.04
49 50 0.670546 ACGCCAGACCAATGAACGAG 60.671 55.000 0.00 0.00 0.00 4.18
50 51 0.250124 AACGCCAGACCAATGAACGA 60.250 50.000 0.00 0.00 0.00 3.85
51 52 0.110238 CAACGCCAGACCAATGAACG 60.110 55.000 0.00 0.00 0.00 3.95
52 53 0.240945 CCAACGCCAGACCAATGAAC 59.759 55.000 0.00 0.00 0.00 3.18
53 54 0.179004 ACCAACGCCAGACCAATGAA 60.179 50.000 0.00 0.00 0.00 2.57
54 55 0.888736 CACCAACGCCAGACCAATGA 60.889 55.000 0.00 0.00 0.00 2.57
55 56 1.580942 CACCAACGCCAGACCAATG 59.419 57.895 0.00 0.00 0.00 2.82
56 57 2.268076 GCACCAACGCCAGACCAAT 61.268 57.895 0.00 0.00 0.00 3.16
57 58 2.904866 GCACCAACGCCAGACCAA 60.905 61.111 0.00 0.00 0.00 3.67
65 66 2.658268 GCAAACAGGCACCAACGC 60.658 61.111 0.00 0.00 0.00 4.84
66 67 2.027460 GGCAAACAGGCACCAACG 59.973 61.111 0.00 0.00 43.51 4.10
67 68 2.027460 CGGCAAACAGGCACCAAC 59.973 61.111 0.00 0.00 44.47 3.77
68 69 3.910490 GCGGCAAACAGGCACCAA 61.910 61.111 0.00 0.00 44.47 3.67
74 75 4.999939 GTTGGCGCGGCAAACAGG 63.000 66.667 43.61 0.00 41.66 4.00
75 76 4.263209 TGTTGGCGCGGCAAACAG 62.263 61.111 43.61 0.00 46.02 3.16
77 78 3.105157 CATGTTGGCGCGGCAAAC 61.105 61.111 43.61 34.58 42.31 2.93
82 83 3.629883 AATGTGCATGTTGGCGCGG 62.630 57.895 8.83 0.00 46.96 6.46
83 84 1.733758 AAATGTGCATGTTGGCGCG 60.734 52.632 0.00 0.00 46.96 6.86
84 85 1.782807 CAAATGTGCATGTTGGCGC 59.217 52.632 0.00 0.00 44.35 6.53
95 96 1.009675 GCGGGATAGCGCAAATGTG 60.010 57.895 11.47 0.00 0.00 3.21
96 97 2.186826 GGCGGGATAGCGCAAATGT 61.187 57.895 11.47 0.00 38.18 2.71
97 98 1.447317 AAGGCGGGATAGCGCAAATG 61.447 55.000 11.47 0.00 38.18 2.32
98 99 0.751643 AAAGGCGGGATAGCGCAAAT 60.752 50.000 11.47 1.62 38.18 2.32
99 100 0.107606 TAAAGGCGGGATAGCGCAAA 60.108 50.000 11.47 0.00 38.18 3.68
100 101 0.107831 ATAAAGGCGGGATAGCGCAA 59.892 50.000 11.47 0.00 38.18 4.85
101 102 0.602638 CATAAAGGCGGGATAGCGCA 60.603 55.000 11.47 0.00 38.18 6.09
102 103 1.298859 CCATAAAGGCGGGATAGCGC 61.299 60.000 0.00 0.00 38.18 5.92
103 104 2.840974 CCATAAAGGCGGGATAGCG 58.159 57.895 0.00 0.00 38.18 4.26
113 114 0.829990 ATTTTGGCCCGCCATAAAGG 59.170 50.000 14.33 0.00 46.64 3.11
114 115 1.938625 CATTTTGGCCCGCCATAAAG 58.061 50.000 14.33 7.55 46.64 1.85
115 116 0.107945 GCATTTTGGCCCGCCATAAA 60.108 50.000 14.33 14.30 46.64 1.40
116 117 1.519719 GCATTTTGGCCCGCCATAA 59.480 52.632 9.70 11.60 46.64 1.90
117 118 3.215245 GCATTTTGGCCCGCCATA 58.785 55.556 9.70 1.39 46.64 2.74
126 127 0.036448 TGTTGGCCATGGCATTTTGG 59.964 50.000 36.56 0.00 44.11 3.28
127 128 1.158434 GTGTTGGCCATGGCATTTTG 58.842 50.000 36.56 0.00 44.11 2.44
128 129 0.763652 TGTGTTGGCCATGGCATTTT 59.236 45.000 36.56 0.00 44.11 1.82
129 130 0.985760 ATGTGTTGGCCATGGCATTT 59.014 45.000 36.56 11.90 44.11 2.32
130 131 0.985760 AATGTGTTGGCCATGGCATT 59.014 45.000 36.56 23.08 44.11 3.56
131 132 0.985760 AAATGTGTTGGCCATGGCAT 59.014 45.000 36.56 18.53 44.11 4.40
132 133 0.321021 GAAATGTGTTGGCCATGGCA 59.679 50.000 36.56 20.63 44.11 4.92
133 134 0.321021 TGAAATGTGTTGGCCATGGC 59.679 50.000 29.47 29.47 41.06 4.40
134 135 1.673626 GCTGAAATGTGTTGGCCATGG 60.674 52.381 6.09 7.63 0.00 3.66
135 136 1.673626 GGCTGAAATGTGTTGGCCATG 60.674 52.381 6.09 0.00 39.38 3.66
136 137 0.609662 GGCTGAAATGTGTTGGCCAT 59.390 50.000 6.09 0.00 39.38 4.40
137 138 0.758310 TGGCTGAAATGTGTTGGCCA 60.758 50.000 0.00 0.00 45.81 5.36
138 139 0.319813 GTGGCTGAAATGTGTTGGCC 60.320 55.000 0.00 0.00 39.93 5.36
139 140 0.675633 AGTGGCTGAAATGTGTTGGC 59.324 50.000 0.00 0.00 0.00 4.52
140 141 3.457610 AAAGTGGCTGAAATGTGTTGG 57.542 42.857 0.00 0.00 0.00 3.77
141 142 5.009010 AGAGTAAAGTGGCTGAAATGTGTTG 59.991 40.000 0.00 0.00 0.00 3.33
142 143 5.133221 AGAGTAAAGTGGCTGAAATGTGTT 58.867 37.500 0.00 0.00 0.00 3.32
143 144 4.718961 AGAGTAAAGTGGCTGAAATGTGT 58.281 39.130 0.00 0.00 0.00 3.72
144 145 4.999950 AGAGAGTAAAGTGGCTGAAATGTG 59.000 41.667 0.00 0.00 0.00 3.21
145 146 5.234466 AGAGAGTAAAGTGGCTGAAATGT 57.766 39.130 0.00 0.00 0.00 2.71
146 147 5.471456 ACAAGAGAGTAAAGTGGCTGAAATG 59.529 40.000 0.00 0.00 0.00 2.32
147 148 5.625150 ACAAGAGAGTAAAGTGGCTGAAAT 58.375 37.500 0.00 0.00 0.00 2.17
148 149 5.036117 ACAAGAGAGTAAAGTGGCTGAAA 57.964 39.130 0.00 0.00 0.00 2.69
149 150 4.689612 ACAAGAGAGTAAAGTGGCTGAA 57.310 40.909 0.00 0.00 0.00 3.02
150 151 4.689612 AACAAGAGAGTAAAGTGGCTGA 57.310 40.909 0.00 0.00 0.00 4.26
151 152 6.861065 TTAAACAAGAGAGTAAAGTGGCTG 57.139 37.500 0.00 0.00 0.00 4.85
152 153 7.556635 AGTTTTAAACAAGAGAGTAAAGTGGCT 59.443 33.333 10.60 0.00 0.00 4.75
153 154 7.704271 AGTTTTAAACAAGAGAGTAAAGTGGC 58.296 34.615 10.60 0.00 0.00 5.01
157 158 9.516314 CCCAAAGTTTTAAACAAGAGAGTAAAG 57.484 33.333 10.60 0.00 0.00 1.85
158 159 9.027202 ACCCAAAGTTTTAAACAAGAGAGTAAA 57.973 29.630 10.60 0.00 0.00 2.01
159 160 8.463607 CACCCAAAGTTTTAAACAAGAGAGTAA 58.536 33.333 10.60 0.00 0.00 2.24
160 161 7.415877 GCACCCAAAGTTTTAAACAAGAGAGTA 60.416 37.037 10.60 0.00 0.00 2.59
161 162 6.627287 GCACCCAAAGTTTTAAACAAGAGAGT 60.627 38.462 10.60 0.00 0.00 3.24
162 163 5.748630 GCACCCAAAGTTTTAAACAAGAGAG 59.251 40.000 10.60 0.00 0.00 3.20
163 164 5.420739 AGCACCCAAAGTTTTAAACAAGAGA 59.579 36.000 10.60 0.00 0.00 3.10
164 165 5.660460 AGCACCCAAAGTTTTAAACAAGAG 58.340 37.500 10.60 0.00 0.00 2.85
165 166 5.669164 AGCACCCAAAGTTTTAAACAAGA 57.331 34.783 10.60 0.00 0.00 3.02
166 167 6.569780 AGTAGCACCCAAAGTTTTAAACAAG 58.430 36.000 10.60 0.00 0.00 3.16
167 168 6.532988 AGTAGCACCCAAAGTTTTAAACAA 57.467 33.333 10.60 0.00 0.00 2.83
168 169 6.532988 AAGTAGCACCCAAAGTTTTAAACA 57.467 33.333 10.60 0.00 0.00 2.83
169 170 7.436080 GGTAAAGTAGCACCCAAAGTTTTAAAC 59.564 37.037 0.00 0.00 0.00 2.01
170 171 7.123847 TGGTAAAGTAGCACCCAAAGTTTTAAA 59.876 33.333 0.00 0.00 33.61 1.52
171 172 6.606395 TGGTAAAGTAGCACCCAAAGTTTTAA 59.394 34.615 0.00 0.00 33.61 1.52
172 173 6.127793 TGGTAAAGTAGCACCCAAAGTTTTA 58.872 36.000 0.00 0.00 33.61 1.52
173 174 4.957327 TGGTAAAGTAGCACCCAAAGTTTT 59.043 37.500 0.00 0.00 33.61 2.43
174 175 4.538738 TGGTAAAGTAGCACCCAAAGTTT 58.461 39.130 0.00 0.00 33.61 2.66
175 176 4.173290 TGGTAAAGTAGCACCCAAAGTT 57.827 40.909 0.00 0.00 33.61 2.66
176 177 3.868619 TGGTAAAGTAGCACCCAAAGT 57.131 42.857 0.00 0.00 33.61 2.66
177 178 3.119495 GCATGGTAAAGTAGCACCCAAAG 60.119 47.826 0.00 0.00 39.21 2.77
178 179 2.823154 GCATGGTAAAGTAGCACCCAAA 59.177 45.455 0.00 0.00 39.21 3.28
179 180 2.224892 TGCATGGTAAAGTAGCACCCAA 60.225 45.455 0.00 0.00 39.21 4.12
180 181 1.352687 TGCATGGTAAAGTAGCACCCA 59.647 47.619 0.00 0.00 39.21 4.51
181 182 2.017049 CTGCATGGTAAAGTAGCACCC 58.983 52.381 0.00 0.00 39.21 4.61
182 183 2.678336 GTCTGCATGGTAAAGTAGCACC 59.322 50.000 0.00 0.00 39.21 5.01
183 184 2.348666 CGTCTGCATGGTAAAGTAGCAC 59.651 50.000 0.00 0.00 39.21 4.40
184 185 2.028476 ACGTCTGCATGGTAAAGTAGCA 60.028 45.455 0.00 0.00 40.84 3.49
185 186 2.603560 GACGTCTGCATGGTAAAGTAGC 59.396 50.000 8.70 0.00 0.00 3.58
186 187 3.859961 CAGACGTCTGCATGGTAAAGTAG 59.140 47.826 31.00 4.01 37.15 2.57
187 188 3.508402 TCAGACGTCTGCATGGTAAAGTA 59.492 43.478 35.48 14.83 43.46 2.24
188 189 2.299013 TCAGACGTCTGCATGGTAAAGT 59.701 45.455 35.48 0.00 43.46 2.66
189 190 2.959516 TCAGACGTCTGCATGGTAAAG 58.040 47.619 35.48 12.66 43.46 1.85
190 191 3.394674 TTCAGACGTCTGCATGGTAAA 57.605 42.857 35.48 21.82 43.46 2.01
191 192 3.056179 TGATTCAGACGTCTGCATGGTAA 60.056 43.478 35.48 24.71 43.46 2.85
192 193 2.495669 TGATTCAGACGTCTGCATGGTA 59.504 45.455 35.48 18.15 43.46 3.25
193 194 1.276138 TGATTCAGACGTCTGCATGGT 59.724 47.619 35.48 20.39 43.46 3.55
194 195 1.662629 GTGATTCAGACGTCTGCATGG 59.337 52.381 35.48 16.24 43.46 3.66
195 196 2.340337 TGTGATTCAGACGTCTGCATG 58.660 47.619 35.48 17.41 43.46 4.06
196 197 2.749280 TGTGATTCAGACGTCTGCAT 57.251 45.000 35.48 31.40 43.46 3.96
197 198 2.524569 TTGTGATTCAGACGTCTGCA 57.475 45.000 35.48 28.29 43.46 4.41
198 199 2.802816 ACTTTGTGATTCAGACGTCTGC 59.197 45.455 35.48 23.80 43.46 4.26
199 200 4.051237 TGACTTTGTGATTCAGACGTCTG 58.949 43.478 34.76 34.76 45.08 3.51
200 201 4.322080 TGACTTTGTGATTCAGACGTCT 57.678 40.909 13.58 13.58 0.00 4.18
201 202 6.893958 ATATGACTTTGTGATTCAGACGTC 57.106 37.500 7.70 7.70 0.00 4.34
202 203 6.313905 GGAATATGACTTTGTGATTCAGACGT 59.686 38.462 0.00 0.00 0.00 4.34
203 204 6.313658 TGGAATATGACTTTGTGATTCAGACG 59.686 38.462 0.00 0.00 0.00 4.18
204 205 7.201679 CCTGGAATATGACTTTGTGATTCAGAC 60.202 40.741 0.00 0.00 0.00 3.51
205 206 6.825213 CCTGGAATATGACTTTGTGATTCAGA 59.175 38.462 0.00 0.00 0.00 3.27
206 207 6.039047 CCCTGGAATATGACTTTGTGATTCAG 59.961 42.308 0.00 0.00 0.00 3.02
207 208 5.887598 CCCTGGAATATGACTTTGTGATTCA 59.112 40.000 0.00 0.00 0.00 2.57
208 209 6.122277 TCCCTGGAATATGACTTTGTGATTC 58.878 40.000 0.00 0.00 0.00 2.52
209 210 6.069440 TCTCCCTGGAATATGACTTTGTGATT 60.069 38.462 0.00 0.00 0.00 2.57
210 211 5.429762 TCTCCCTGGAATATGACTTTGTGAT 59.570 40.000 0.00 0.00 0.00 3.06
211 212 4.782691 TCTCCCTGGAATATGACTTTGTGA 59.217 41.667 0.00 0.00 0.00 3.58
212 213 4.878397 GTCTCCCTGGAATATGACTTTGTG 59.122 45.833 0.00 0.00 0.00 3.33
213 214 4.536090 TGTCTCCCTGGAATATGACTTTGT 59.464 41.667 0.00 0.00 0.00 2.83
214 215 5.102953 TGTCTCCCTGGAATATGACTTTG 57.897 43.478 0.00 0.00 0.00 2.77
215 216 5.779241 TTGTCTCCCTGGAATATGACTTT 57.221 39.130 0.00 0.00 0.00 2.66
216 217 5.501156 GTTTGTCTCCCTGGAATATGACTT 58.499 41.667 0.00 0.00 0.00 3.01
217 218 4.383118 CGTTTGTCTCCCTGGAATATGACT 60.383 45.833 0.00 0.00 0.00 3.41
218 219 3.871594 CGTTTGTCTCCCTGGAATATGAC 59.128 47.826 0.00 0.00 0.00 3.06
219 220 3.517901 ACGTTTGTCTCCCTGGAATATGA 59.482 43.478 0.00 0.00 0.00 2.15
220 221 3.871594 GACGTTTGTCTCCCTGGAATATG 59.128 47.826 0.00 0.00 42.08 1.78
221 222 3.118371 GGACGTTTGTCTCCCTGGAATAT 60.118 47.826 0.00 0.00 44.83 1.28
222 223 2.235402 GGACGTTTGTCTCCCTGGAATA 59.765 50.000 0.00 0.00 44.83 1.75
223 224 1.003233 GGACGTTTGTCTCCCTGGAAT 59.997 52.381 0.00 0.00 44.83 3.01
224 225 0.395312 GGACGTTTGTCTCCCTGGAA 59.605 55.000 0.00 0.00 44.83 3.53
225 226 0.471211 AGGACGTTTGTCTCCCTGGA 60.471 55.000 0.00 0.00 44.83 3.86
226 227 0.037232 GAGGACGTTTGTCTCCCTGG 60.037 60.000 0.00 0.00 44.83 4.45
227 228 0.037232 GGAGGACGTTTGTCTCCCTG 60.037 60.000 13.67 0.00 44.83 4.45
228 229 2.363297 GGAGGACGTTTGTCTCCCT 58.637 57.895 13.67 3.64 44.83 4.20
229 230 1.295746 GGGAGGACGTTTGTCTCCC 59.704 63.158 22.41 22.41 46.17 4.30
230 231 1.295746 GGGGAGGACGTTTGTCTCC 59.704 63.158 15.35 15.35 44.83 3.71
231 232 0.395312 TTGGGGAGGACGTTTGTCTC 59.605 55.000 0.00 0.00 44.83 3.36
232 233 0.841289 TTTGGGGAGGACGTTTGTCT 59.159 50.000 0.00 0.00 44.83 3.41
233 234 1.235724 CTTTGGGGAGGACGTTTGTC 58.764 55.000 0.00 0.00 44.72 3.18
234 235 0.549469 ACTTTGGGGAGGACGTTTGT 59.451 50.000 0.00 0.00 0.00 2.83
235 236 1.202770 AGACTTTGGGGAGGACGTTTG 60.203 52.381 0.00 0.00 0.00 2.93
236 237 1.137697 AGACTTTGGGGAGGACGTTT 58.862 50.000 0.00 0.00 0.00 3.60
237 238 0.396811 CAGACTTTGGGGAGGACGTT 59.603 55.000 0.00 0.00 0.00 3.99
238 239 0.471211 TCAGACTTTGGGGAGGACGT 60.471 55.000 0.00 0.00 0.00 4.34
239 240 0.905357 ATCAGACTTTGGGGAGGACG 59.095 55.000 0.00 0.00 0.00 4.79
240 241 1.065126 CCATCAGACTTTGGGGAGGAC 60.065 57.143 0.00 0.00 0.00 3.85
241 242 1.289160 CCATCAGACTTTGGGGAGGA 58.711 55.000 0.00 0.00 0.00 3.71
242 243 0.394899 GCCATCAGACTTTGGGGAGG 60.395 60.000 3.87 0.00 33.40 4.30
243 244 0.622665 AGCCATCAGACTTTGGGGAG 59.377 55.000 3.87 0.00 33.40 4.30
244 245 1.004745 GAAGCCATCAGACTTTGGGGA 59.995 52.381 3.87 0.00 33.40 4.81
245 246 1.272092 TGAAGCCATCAGACTTTGGGG 60.272 52.381 3.87 0.00 33.04 4.96
246 247 1.815003 GTGAAGCCATCAGACTTTGGG 59.185 52.381 3.87 0.00 39.19 4.12
247 248 1.466167 CGTGAAGCCATCAGACTTTGG 59.534 52.381 0.00 0.00 39.19 3.28
248 249 2.146342 ACGTGAAGCCATCAGACTTTG 58.854 47.619 0.00 0.00 39.19 2.77
249 250 2.224281 TGACGTGAAGCCATCAGACTTT 60.224 45.455 0.00 0.00 39.19 2.66
250 251 1.344438 TGACGTGAAGCCATCAGACTT 59.656 47.619 0.00 0.00 39.19 3.01
251 252 0.969149 TGACGTGAAGCCATCAGACT 59.031 50.000 0.00 0.00 39.19 3.24
252 253 1.071605 GTGACGTGAAGCCATCAGAC 58.928 55.000 0.00 0.00 39.19 3.51
253 254 0.678950 TGTGACGTGAAGCCATCAGA 59.321 50.000 0.00 0.00 39.19 3.27
254 255 1.730501 ATGTGACGTGAAGCCATCAG 58.269 50.000 0.00 0.00 39.19 2.90
255 256 2.183478 AATGTGACGTGAAGCCATCA 57.817 45.000 0.00 0.00 35.05 3.07
256 257 2.029244 CGTAATGTGACGTGAAGCCATC 59.971 50.000 0.00 0.00 38.04 3.51
257 258 1.999735 CGTAATGTGACGTGAAGCCAT 59.000 47.619 0.00 0.00 38.04 4.40
258 259 1.424403 CGTAATGTGACGTGAAGCCA 58.576 50.000 0.00 0.00 38.04 4.75
276 277 1.785321 GTGGATGCCACGTACAACG 59.215 57.895 0.22 0.00 44.95 4.10
285 286 3.770040 CGGACGAGGTGGATGCCA 61.770 66.667 0.00 0.00 0.00 4.92
286 287 4.530857 CCGGACGAGGTGGATGCC 62.531 72.222 0.00 0.00 0.00 4.40
287 288 2.515996 TTTCCGGACGAGGTGGATGC 62.516 60.000 1.83 0.00 0.00 3.91
288 289 0.036765 TTTTCCGGACGAGGTGGATG 60.037 55.000 1.83 0.00 0.00 3.51
289 290 0.249398 CTTTTCCGGACGAGGTGGAT 59.751 55.000 1.83 0.00 0.00 3.41
290 291 1.669440 CTTTTCCGGACGAGGTGGA 59.331 57.895 1.83 0.00 0.00 4.02
291 292 1.375523 CCTTTTCCGGACGAGGTGG 60.376 63.158 19.75 7.26 0.00 4.61
292 293 2.033194 GCCTTTTCCGGACGAGGTG 61.033 63.158 25.58 8.86 0.00 4.00
293 294 2.346365 GCCTTTTCCGGACGAGGT 59.654 61.111 25.58 0.00 0.00 3.85
294 295 2.436115 GGCCTTTTCCGGACGAGG 60.436 66.667 22.51 22.51 0.00 4.63
295 296 1.298859 CTTGGCCTTTTCCGGACGAG 61.299 60.000 1.83 4.76 37.24 4.18
296 297 1.302192 CTTGGCCTTTTCCGGACGA 60.302 57.895 1.83 0.00 33.52 4.20
297 298 1.599797 ACTTGGCCTTTTCCGGACG 60.600 57.895 1.83 0.00 33.52 4.79
298 299 1.956802 CACTTGGCCTTTTCCGGAC 59.043 57.895 1.83 0.00 0.00 4.79
299 300 1.901464 GCACTTGGCCTTTTCCGGA 60.901 57.895 0.00 0.00 36.11 5.14
300 301 2.146073 CTGCACTTGGCCTTTTCCGG 62.146 60.000 3.32 0.00 43.89 5.14
301 302 1.286880 CTGCACTTGGCCTTTTCCG 59.713 57.895 3.32 0.00 43.89 4.30
302 303 1.667722 CCTGCACTTGGCCTTTTCC 59.332 57.895 3.32 0.00 43.89 3.13
303 304 1.667722 CCCTGCACTTGGCCTTTTC 59.332 57.895 3.32 0.00 43.89 2.29
304 305 2.510551 GCCCTGCACTTGGCCTTTT 61.511 57.895 3.32 0.00 43.89 2.27
305 306 2.919328 GCCCTGCACTTGGCCTTT 60.919 61.111 3.32 0.00 43.89 3.11
310 311 2.674380 GACAGGCCCTGCACTTGG 60.674 66.667 11.63 0.00 34.37 3.61
311 312 1.970114 CTGACAGGCCCTGCACTTG 60.970 63.158 11.63 0.00 34.37 3.16
312 313 2.433446 CTGACAGGCCCTGCACTT 59.567 61.111 11.63 0.00 34.37 3.16
313 314 4.341783 GCTGACAGGCCCTGCACT 62.342 66.667 11.63 0.00 34.37 4.40
324 325 1.337703 GTTGCATTTGACTGGCTGACA 59.662 47.619 0.00 0.00 0.00 3.58
325 326 1.337703 TGTTGCATTTGACTGGCTGAC 59.662 47.619 0.00 0.00 0.00 3.51
326 327 1.610038 CTGTTGCATTTGACTGGCTGA 59.390 47.619 0.00 0.00 0.00 4.26
327 328 1.610038 TCTGTTGCATTTGACTGGCTG 59.390 47.619 0.00 0.00 0.00 4.85
328 329 1.985473 TCTGTTGCATTTGACTGGCT 58.015 45.000 0.00 0.00 0.00 4.75
329 330 2.229543 TCATCTGTTGCATTTGACTGGC 59.770 45.455 0.00 0.00 0.00 4.85
330 331 4.157105 TGATCATCTGTTGCATTTGACTGG 59.843 41.667 0.00 0.00 0.00 4.00
331 332 5.106277 ACTGATCATCTGTTGCATTTGACTG 60.106 40.000 0.00 0.00 0.00 3.51
332 333 5.008331 ACTGATCATCTGTTGCATTTGACT 58.992 37.500 0.00 0.00 0.00 3.41
333 334 5.306532 ACTGATCATCTGTTGCATTTGAC 57.693 39.130 0.00 0.00 0.00 3.18
334 335 5.970317 AACTGATCATCTGTTGCATTTGA 57.030 34.783 9.00 0.00 37.20 2.69
335 336 6.089016 GTGAAACTGATCATCTGTTGCATTTG 59.911 38.462 18.44 0.00 43.00 2.32
336 337 6.154445 GTGAAACTGATCATCTGTTGCATTT 58.846 36.000 18.44 0.58 43.00 2.32
337 338 5.336213 GGTGAAACTGATCATCTGTTGCATT 60.336 40.000 18.44 0.92 43.00 3.56
338 339 4.157289 GGTGAAACTGATCATCTGTTGCAT 59.843 41.667 18.44 1.25 43.00 3.96
339 340 3.503363 GGTGAAACTGATCATCTGTTGCA 59.497 43.478 12.93 12.93 40.25 4.08
340 341 4.088823 GGTGAAACTGATCATCTGTTGC 57.911 45.455 10.43 9.28 38.32 4.17
353 354 3.067106 CTGCTGTATTGTCGGTGAAACT 58.933 45.455 0.00 0.00 36.74 2.66
354 355 3.064207 TCTGCTGTATTGTCGGTGAAAC 58.936 45.455 0.00 0.00 0.00 2.78
355 356 3.006430 TCTCTGCTGTATTGTCGGTGAAA 59.994 43.478 0.00 0.00 0.00 2.69
356 357 2.560981 TCTCTGCTGTATTGTCGGTGAA 59.439 45.455 0.00 0.00 0.00 3.18
357 358 2.167662 TCTCTGCTGTATTGTCGGTGA 58.832 47.619 0.00 0.00 0.00 4.02
358 359 2.654749 TCTCTGCTGTATTGTCGGTG 57.345 50.000 0.00 0.00 0.00 4.94
359 360 3.678056 TTTCTCTGCTGTATTGTCGGT 57.322 42.857 0.00 0.00 0.00 4.69
360 361 4.183865 TGATTTCTCTGCTGTATTGTCGG 58.816 43.478 0.00 0.00 0.00 4.79
361 362 5.292834 ACATGATTTCTCTGCTGTATTGTCG 59.707 40.000 0.00 0.00 0.00 4.35
362 363 6.484540 CACATGATTTCTCTGCTGTATTGTC 58.515 40.000 0.00 0.00 0.00 3.18
363 364 5.163683 GCACATGATTTCTCTGCTGTATTGT 60.164 40.000 0.00 0.00 0.00 2.71
364 365 5.271625 GCACATGATTTCTCTGCTGTATTG 58.728 41.667 0.00 0.00 0.00 1.90
365 366 4.034858 CGCACATGATTTCTCTGCTGTATT 59.965 41.667 0.00 0.00 0.00 1.89
366 367 3.558829 CGCACATGATTTCTCTGCTGTAT 59.441 43.478 0.00 0.00 0.00 2.29
367 368 2.931969 CGCACATGATTTCTCTGCTGTA 59.068 45.455 0.00 0.00 0.00 2.74
368 369 1.736126 CGCACATGATTTCTCTGCTGT 59.264 47.619 0.00 0.00 0.00 4.40
369 370 1.531264 GCGCACATGATTTCTCTGCTG 60.531 52.381 0.30 0.00 0.00 4.41
370 371 0.731417 GCGCACATGATTTCTCTGCT 59.269 50.000 0.30 0.00 0.00 4.24
371 372 0.731417 AGCGCACATGATTTCTCTGC 59.269 50.000 11.47 0.00 0.00 4.26
372 373 1.531264 GCAGCGCACATGATTTCTCTG 60.531 52.381 11.47 0.00 0.00 3.35
373 374 0.731417 GCAGCGCACATGATTTCTCT 59.269 50.000 11.47 0.00 0.00 3.10
374 375 0.248377 GGCAGCGCACATGATTTCTC 60.248 55.000 11.47 0.00 0.00 2.87
375 376 0.961857 TGGCAGCGCACATGATTTCT 60.962 50.000 11.47 0.00 0.00 2.52
376 377 0.101759 ATGGCAGCGCACATGATTTC 59.898 50.000 11.47 0.00 0.00 2.17
377 378 0.101759 GATGGCAGCGCACATGATTT 59.898 50.000 11.47 0.00 0.00 2.17
378 379 1.731433 GGATGGCAGCGCACATGATT 61.731 55.000 11.47 0.00 0.00 2.57
379 380 2.191513 GGATGGCAGCGCACATGAT 61.192 57.895 11.47 0.00 0.00 2.45
380 381 2.825387 GGATGGCAGCGCACATGA 60.825 61.111 11.47 0.00 0.00 3.07
381 382 2.402282 GATGGATGGCAGCGCACATG 62.402 60.000 11.47 0.00 0.00 3.21
382 383 2.124024 ATGGATGGCAGCGCACAT 60.124 55.556 11.47 11.35 0.00 3.21
383 384 2.825387 GATGGATGGCAGCGCACA 60.825 61.111 11.47 5.96 0.00 4.57
384 385 3.945434 CGATGGATGGCAGCGCAC 61.945 66.667 11.47 0.00 0.00 5.34
385 386 2.585791 TTACGATGGATGGCAGCGCA 62.586 55.000 11.47 0.00 34.56 6.09
386 387 1.436195 TTTACGATGGATGGCAGCGC 61.436 55.000 0.00 0.00 34.56 5.92
387 388 1.229428 ATTTACGATGGATGGCAGCG 58.771 50.000 0.00 0.00 37.48 5.18
388 389 4.065088 TCTTATTTACGATGGATGGCAGC 58.935 43.478 0.00 0.00 0.00 5.25
389 390 5.300752 ACTCTTATTTACGATGGATGGCAG 58.699 41.667 0.00 0.00 0.00 4.85
390 391 5.290493 ACTCTTATTTACGATGGATGGCA 57.710 39.130 0.00 0.00 0.00 4.92
391 392 7.624344 GCAATACTCTTATTTACGATGGATGGC 60.624 40.741 0.00 0.00 0.00 4.40
392 393 7.387673 TGCAATACTCTTATTTACGATGGATGG 59.612 37.037 0.00 0.00 0.00 3.51
393 394 8.310406 TGCAATACTCTTATTTACGATGGATG 57.690 34.615 0.00 0.00 0.00 3.51
394 395 8.939929 CATGCAATACTCTTATTTACGATGGAT 58.060 33.333 0.00 0.00 0.00 3.41
395 396 7.095229 GCATGCAATACTCTTATTTACGATGGA 60.095 37.037 14.21 0.00 0.00 3.41
396 397 7.017645 GCATGCAATACTCTTATTTACGATGG 58.982 38.462 14.21 0.00 0.00 3.51
397 398 7.575365 TGCATGCAATACTCTTATTTACGATG 58.425 34.615 20.30 0.00 0.00 3.84
398 399 7.657354 TCTGCATGCAATACTCTTATTTACGAT 59.343 33.333 22.88 0.00 0.00 3.73
399 400 6.983890 TCTGCATGCAATACTCTTATTTACGA 59.016 34.615 22.88 6.44 0.00 3.43
400 401 7.177498 TCTGCATGCAATACTCTTATTTACG 57.823 36.000 22.88 3.94 0.00 3.18
401 402 9.787532 TTTTCTGCATGCAATACTCTTATTTAC 57.212 29.630 22.88 0.00 0.00 2.01
402 403 9.787532 GTTTTCTGCATGCAATACTCTTATTTA 57.212 29.630 22.88 0.00 0.00 1.40
403 404 8.306038 TGTTTTCTGCATGCAATACTCTTATTT 58.694 29.630 22.88 0.00 0.00 1.40
404 405 7.829725 TGTTTTCTGCATGCAATACTCTTATT 58.170 30.769 22.88 0.00 0.00 1.40
405 406 7.395190 TGTTTTCTGCATGCAATACTCTTAT 57.605 32.000 22.88 0.00 0.00 1.73
406 407 6.816134 TGTTTTCTGCATGCAATACTCTTA 57.184 33.333 22.88 1.58 0.00 2.10
407 408 5.710513 TGTTTTCTGCATGCAATACTCTT 57.289 34.783 22.88 0.00 0.00 2.85
408 409 5.710513 TTGTTTTCTGCATGCAATACTCT 57.289 34.783 22.88 0.00 0.00 3.24
409 410 6.151691 TCTTTGTTTTCTGCATGCAATACTC 58.848 36.000 22.88 12.54 0.00 2.59
410 411 6.088016 TCTTTGTTTTCTGCATGCAATACT 57.912 33.333 22.88 0.00 0.00 2.12
411 412 6.587226 TGATCTTTGTTTTCTGCATGCAATAC 59.413 34.615 22.88 16.22 0.00 1.89
412 413 6.689554 TGATCTTTGTTTTCTGCATGCAATA 58.310 32.000 22.88 10.18 0.00 1.90
413 414 5.543714 TGATCTTTGTTTTCTGCATGCAAT 58.456 33.333 22.88 7.89 0.00 3.56
414 415 4.946445 TGATCTTTGTTTTCTGCATGCAA 58.054 34.783 22.88 10.06 0.00 4.08
415 416 4.587584 TGATCTTTGTTTTCTGCATGCA 57.412 36.364 21.29 21.29 0.00 3.96
416 417 4.151157 GGTTGATCTTTGTTTTCTGCATGC 59.849 41.667 11.82 11.82 0.00 4.06
417 418 5.404366 CAGGTTGATCTTTGTTTTCTGCATG 59.596 40.000 0.00 0.00 0.00 4.06
418 419 5.510179 CCAGGTTGATCTTTGTTTTCTGCAT 60.510 40.000 0.00 0.00 0.00 3.96
419 420 4.202141 CCAGGTTGATCTTTGTTTTCTGCA 60.202 41.667 0.00 0.00 0.00 4.41
420 421 4.301628 CCAGGTTGATCTTTGTTTTCTGC 58.698 43.478 0.00 0.00 0.00 4.26
421 422 4.301628 GCCAGGTTGATCTTTGTTTTCTG 58.698 43.478 0.00 0.00 0.00 3.02
422 423 3.004734 CGCCAGGTTGATCTTTGTTTTCT 59.995 43.478 0.00 0.00 0.00 2.52
423 424 3.243401 ACGCCAGGTTGATCTTTGTTTTC 60.243 43.478 0.00 0.00 0.00 2.29
424 425 2.693074 ACGCCAGGTTGATCTTTGTTTT 59.307 40.909 0.00 0.00 0.00 2.43
425 426 2.306847 ACGCCAGGTTGATCTTTGTTT 58.693 42.857 0.00 0.00 0.00 2.83
426 427 1.981256 ACGCCAGGTTGATCTTTGTT 58.019 45.000 0.00 0.00 0.00 2.83
427 428 2.038557 ACTACGCCAGGTTGATCTTTGT 59.961 45.455 0.00 0.00 0.00 2.83
428 429 2.699954 ACTACGCCAGGTTGATCTTTG 58.300 47.619 0.00 0.00 0.00 2.77
429 430 4.443034 GGATACTACGCCAGGTTGATCTTT 60.443 45.833 0.00 0.00 0.00 2.52
430 431 3.069729 GGATACTACGCCAGGTTGATCTT 59.930 47.826 0.00 0.00 0.00 2.40
431 432 2.628657 GGATACTACGCCAGGTTGATCT 59.371 50.000 0.00 0.00 0.00 2.75
432 433 2.364324 TGGATACTACGCCAGGTTGATC 59.636 50.000 0.00 0.00 37.61 2.92
433 434 2.102588 GTGGATACTACGCCAGGTTGAT 59.897 50.000 0.00 0.00 34.22 2.57
434 435 1.479323 GTGGATACTACGCCAGGTTGA 59.521 52.381 0.00 0.00 34.22 3.18
435 436 1.206132 TGTGGATACTACGCCAGGTTG 59.794 52.381 0.00 0.00 34.22 3.77
436 437 1.563924 TGTGGATACTACGCCAGGTT 58.436 50.000 0.00 0.00 34.22 3.50
437 438 1.789523 ATGTGGATACTACGCCAGGT 58.210 50.000 0.00 0.00 34.22 4.00
438 439 2.910688 AATGTGGATACTACGCCAGG 57.089 50.000 0.00 0.00 34.22 4.45
439 440 3.318017 GCTAATGTGGATACTACGCCAG 58.682 50.000 0.00 0.00 34.22 4.85
440 441 2.036733 GGCTAATGTGGATACTACGCCA 59.963 50.000 0.00 0.00 35.23 5.69
441 442 2.036733 TGGCTAATGTGGATACTACGCC 59.963 50.000 0.00 0.00 35.67 5.68
442 443 3.057734 GTGGCTAATGTGGATACTACGC 58.942 50.000 0.00 0.00 37.61 4.42
443 444 3.650139 GGTGGCTAATGTGGATACTACG 58.350 50.000 0.00 0.00 37.61 3.51
444 445 3.319972 TCGGTGGCTAATGTGGATACTAC 59.680 47.826 0.00 0.00 37.61 2.73
445 446 3.568443 TCGGTGGCTAATGTGGATACTA 58.432 45.455 0.00 0.00 37.61 1.82
446 447 2.394632 TCGGTGGCTAATGTGGATACT 58.605 47.619 0.00 0.00 37.61 2.12
447 448 2.902705 TCGGTGGCTAATGTGGATAC 57.097 50.000 0.00 0.00 0.00 2.24
448 449 3.035363 TCTTCGGTGGCTAATGTGGATA 58.965 45.455 0.00 0.00 0.00 2.59
449 450 1.837439 TCTTCGGTGGCTAATGTGGAT 59.163 47.619 0.00 0.00 0.00 3.41
450 451 1.207089 CTCTTCGGTGGCTAATGTGGA 59.793 52.381 0.00 0.00 0.00 4.02
451 452 1.656652 CTCTTCGGTGGCTAATGTGG 58.343 55.000 0.00 0.00 0.00 4.17
452 453 1.207089 TCCTCTTCGGTGGCTAATGTG 59.793 52.381 0.00 0.00 0.00 3.21
453 454 1.482593 CTCCTCTTCGGTGGCTAATGT 59.517 52.381 0.00 0.00 0.00 2.71
454 455 1.202580 CCTCCTCTTCGGTGGCTAATG 60.203 57.143 0.00 0.00 39.43 1.90
455 456 1.123928 CCTCCTCTTCGGTGGCTAAT 58.876 55.000 0.00 0.00 39.43 1.73
456 457 2.591915 CCTCCTCTTCGGTGGCTAA 58.408 57.895 0.00 0.00 39.43 3.09
457 458 4.356979 CCTCCTCTTCGGTGGCTA 57.643 61.111 0.00 0.00 39.43 3.93
461 462 3.068691 TCCGCCTCCTCTTCGGTG 61.069 66.667 0.00 0.00 43.35 4.94
462 463 3.069318 GTCCGCCTCCTCTTCGGT 61.069 66.667 0.00 0.00 43.35 4.69
463 464 2.352032 AAGTCCGCCTCCTCTTCGG 61.352 63.158 0.00 0.00 44.16 4.30
464 465 1.153745 CAAGTCCGCCTCCTCTTCG 60.154 63.158 0.00 0.00 0.00 3.79
465 466 1.448717 GCAAGTCCGCCTCCTCTTC 60.449 63.158 0.00 0.00 0.00 2.87
466 467 2.665603 GCAAGTCCGCCTCCTCTT 59.334 61.111 0.00 0.00 0.00 2.85
467 468 3.764466 CGCAAGTCCGCCTCCTCT 61.764 66.667 0.00 0.00 0.00 3.69
468 469 3.760035 TCGCAAGTCCGCCTCCTC 61.760 66.667 0.00 0.00 39.48 3.71
469 470 4.070552 GTCGCAAGTCCGCCTCCT 62.071 66.667 0.00 0.00 39.48 3.69
491 492 3.053896 GTTTTGGCCTCCCGTCGG 61.054 66.667 3.32 3.60 0.00 4.79
492 493 3.053896 GGTTTTGGCCTCCCGTCG 61.054 66.667 3.32 0.00 0.00 5.12
493 494 1.844544 TAGGGTTTTGGCCTCCCGTC 61.845 60.000 3.32 0.00 45.27 4.79
494 495 1.848886 CTAGGGTTTTGGCCTCCCGT 61.849 60.000 3.32 2.67 45.27 5.28
495 496 1.077716 CTAGGGTTTTGGCCTCCCG 60.078 63.158 3.32 0.00 45.27 5.14
496 497 1.379977 GCTAGGGTTTTGGCCTCCC 60.380 63.158 3.32 10.92 41.36 4.30
497 498 0.039764 AAGCTAGGGTTTTGGCCTCC 59.960 55.000 3.32 0.99 0.00 4.30
498 499 1.924731 AAAGCTAGGGTTTTGGCCTC 58.075 50.000 3.32 0.00 28.33 4.70
499 500 2.398754 AAAAGCTAGGGTTTTGGCCT 57.601 45.000 3.32 0.00 40.87 5.19
516 517 1.705186 CCTCCTCCTCCTCCACAAAAA 59.295 52.381 0.00 0.00 0.00 1.94
517 518 1.362224 CCTCCTCCTCCTCCACAAAA 58.638 55.000 0.00 0.00 0.00 2.44
518 519 1.201429 GCCTCCTCCTCCTCCACAAA 61.201 60.000 0.00 0.00 0.00 2.83
519 520 1.613630 GCCTCCTCCTCCTCCACAA 60.614 63.158 0.00 0.00 0.00 3.33
520 521 2.039624 GCCTCCTCCTCCTCCACA 59.960 66.667 0.00 0.00 0.00 4.17
521 522 3.151022 CGCCTCCTCCTCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
522 523 4.465446 CCGCCTCCTCCTCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
525 526 4.722535 TTGCCGCCTCCTCCTCCT 62.723 66.667 0.00 0.00 0.00 3.69
526 527 4.475135 GTTGCCGCCTCCTCCTCC 62.475 72.222 0.00 0.00 0.00 4.30
527 528 4.821589 CGTTGCCGCCTCCTCCTC 62.822 72.222 0.00 0.00 0.00 3.71
533 534 4.143333 TCTAGCCGTTGCCGCCTC 62.143 66.667 0.00 0.00 38.69 4.70
534 535 4.148825 CTCTAGCCGTTGCCGCCT 62.149 66.667 0.00 0.00 38.69 5.52
535 536 3.447025 ATCTCTAGCCGTTGCCGCC 62.447 63.158 0.00 0.00 38.69 6.13
536 537 2.107141 ATCTCTAGCCGTTGCCGC 59.893 61.111 0.00 0.00 38.69 6.53
537 538 0.596083 CTCATCTCTAGCCGTTGCCG 60.596 60.000 0.00 0.00 38.69 5.69
538 539 0.878086 GCTCATCTCTAGCCGTTGCC 60.878 60.000 0.00 0.00 38.69 4.52
539 540 2.599216 GCTCATCTCTAGCCGTTGC 58.401 57.895 0.00 0.00 33.73 4.17
545 546 1.810151 CTACTCGGGCTCATCTCTAGC 59.190 57.143 0.00 0.00 39.33 3.42
546 547 1.810151 GCTACTCGGGCTCATCTCTAG 59.190 57.143 0.00 0.00 0.00 2.43
547 548 1.143073 TGCTACTCGGGCTCATCTCTA 59.857 52.381 0.00 0.00 0.00 2.43
548 549 0.106469 TGCTACTCGGGCTCATCTCT 60.106 55.000 0.00 0.00 0.00 3.10
549 550 0.313672 CTGCTACTCGGGCTCATCTC 59.686 60.000 0.00 0.00 0.00 2.75
550 551 1.743321 GCTGCTACTCGGGCTCATCT 61.743 60.000 0.00 0.00 0.00 2.90
551 552 1.300542 GCTGCTACTCGGGCTCATC 60.301 63.158 0.00 0.00 0.00 2.92
552 553 2.818132 GCTGCTACTCGGGCTCAT 59.182 61.111 0.00 0.00 0.00 2.90
553 554 3.826754 CGCTGCTACTCGGGCTCA 61.827 66.667 0.00 0.00 0.00 4.26
557 558 4.880537 CCTGCGCTGCTACTCGGG 62.881 72.222 9.73 0.00 0.00 5.14
558 559 3.826754 TCCTGCGCTGCTACTCGG 61.827 66.667 9.73 0.00 0.00 4.63
559 560 2.580867 GTCCTGCGCTGCTACTCG 60.581 66.667 9.73 0.00 0.00 4.18
560 561 2.202810 GGTCCTGCGCTGCTACTC 60.203 66.667 9.73 0.61 0.00 2.59
561 562 3.775654 GGGTCCTGCGCTGCTACT 61.776 66.667 9.73 0.00 0.00 2.57
562 563 2.876368 AATGGGTCCTGCGCTGCTAC 62.876 60.000 9.73 9.13 0.00 3.58
563 564 2.196997 AAATGGGTCCTGCGCTGCTA 62.197 55.000 9.73 0.00 0.00 3.49
564 565 3.574074 AAATGGGTCCTGCGCTGCT 62.574 57.895 9.73 0.00 0.00 4.24
565 566 3.064324 AAATGGGTCCTGCGCTGC 61.064 61.111 9.73 0.00 0.00 5.25
566 567 2.879907 CAAATGGGTCCTGCGCTG 59.120 61.111 9.73 8.47 0.00 5.18
567 568 3.064324 GCAAATGGGTCCTGCGCT 61.064 61.111 9.73 0.00 0.00 5.92
568 569 3.346631 CTGCAAATGGGTCCTGCGC 62.347 63.158 0.00 0.00 38.97 6.09
569 570 2.703798 CCTGCAAATGGGTCCTGCG 61.704 63.158 0.00 0.00 38.97 5.18
570 571 1.598701 GACCTGCAAATGGGTCCTGC 61.599 60.000 10.97 0.00 44.35 4.85
571 572 2.571548 GACCTGCAAATGGGTCCTG 58.428 57.895 10.97 0.00 44.35 3.86
624 625 3.498397 TCTTTGATGAGTTTGTTCGAGCC 59.502 43.478 0.00 0.00 0.00 4.70
625 626 4.732285 TCTTTGATGAGTTTGTTCGAGC 57.268 40.909 0.00 0.00 0.00 5.03
628 629 8.955061 ATGTAATTCTTTGATGAGTTTGTTCG 57.045 30.769 0.00 0.00 0.00 3.95
684 688 6.127814 CCCTTCGCTCCATAATATAAGACGTA 60.128 42.308 0.00 0.00 0.00 3.57
701 717 5.540337 TGATCTATTCAATACTCCCTTCGCT 59.460 40.000 0.00 0.00 0.00 4.93
724 770 6.587608 GGTAAATTGATGCTTGTTTCTCCTTG 59.412 38.462 0.00 0.00 0.00 3.61
728 774 6.366061 GGTTGGTAAATTGATGCTTGTTTCTC 59.634 38.462 0.00 0.00 0.00 2.87
731 777 5.923204 TGGTTGGTAAATTGATGCTTGTTT 58.077 33.333 0.00 0.00 0.00 2.83
737 783 7.387397 TGAAGAAAATGGTTGGTAAATTGATGC 59.613 33.333 0.00 0.00 0.00 3.91
738 784 8.830201 TGAAGAAAATGGTTGGTAAATTGATG 57.170 30.769 0.00 0.00 0.00 3.07
743 789 5.248248 CCCCTGAAGAAAATGGTTGGTAAAT 59.752 40.000 0.00 0.00 0.00 1.40
744 790 4.591072 CCCCTGAAGAAAATGGTTGGTAAA 59.409 41.667 0.00 0.00 0.00 2.01
788 842 0.527817 GTCCTTGGTGCGATCTACGG 60.528 60.000 0.00 0.00 42.83 4.02
1049 1112 4.986708 TGGGCTTGGGTTTCGGCC 62.987 66.667 0.00 0.00 43.42 6.13
1194 1257 4.189188 CCGTAGAGGGTGTCGCCG 62.189 72.222 0.00 0.00 38.44 6.46
1801 1864 2.595386 CAAGTAAGCCGCATTGGTTTC 58.405 47.619 0.00 0.00 40.79 2.78
1930 1993 2.154462 CTCCTTGAACCGCTTGACATT 58.846 47.619 0.00 0.00 0.00 2.71
2048 2125 8.776376 AGTTTCAATTCAGAACACAAACAAAT 57.224 26.923 12.20 0.00 0.00 2.32
2126 2203 2.423538 CAGATTTGCTCCCTAAAACCCG 59.576 50.000 0.00 0.00 0.00 5.28
2188 2265 8.943909 AAATCCAACTCTTTATTAGGTACTCG 57.056 34.615 0.00 0.00 41.75 4.18
2365 2448 2.520260 GCTATGGGCTTGCCCTGG 60.520 66.667 28.37 18.95 38.06 4.45
2785 2869 2.151202 TCAAGTAAAAGGAGCCAAGCG 58.849 47.619 0.00 0.00 0.00 4.68
2974 3058 3.068165 GGTTAAGAAGTTTGCAGCAACCT 59.932 43.478 7.54 2.56 33.10 3.50
2976 3060 4.307443 AGGTTAAGAAGTTTGCAGCAAC 57.693 40.909 7.54 3.45 0.00 4.17
2978 3062 5.592688 ACTTAAGGTTAAGAAGTTTGCAGCA 59.407 36.000 14.97 0.00 42.05 4.41
2979 3063 6.017026 AGACTTAAGGTTAAGAAGTTTGCAGC 60.017 38.462 14.97 0.00 42.05 5.25
2980 3064 7.497925 AGACTTAAGGTTAAGAAGTTTGCAG 57.502 36.000 14.97 0.00 42.05 4.41
2981 3065 7.875327 AAGACTTAAGGTTAAGAAGTTTGCA 57.125 32.000 14.97 0.00 42.05 4.08
2982 3066 9.827411 CATAAGACTTAAGGTTAAGAAGTTTGC 57.173 33.333 14.97 0.00 42.05 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.