Multiple sequence alignment - TraesCS5A01G311300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G311300 chr5A 100.000 2639 0 0 1 2639 523017095 523014457 0.000000e+00 4874.0
1 TraesCS5A01G311300 chr5A 87.466 367 37 6 1035 1392 522104293 522104659 5.260000e-112 414.0
2 TraesCS5A01G311300 chr5A 86.908 359 37 7 1034 1382 522082785 522083143 6.850000e-106 394.0
3 TraesCS5A01G311300 chr5A 80.431 557 71 25 999 1542 522605563 522605032 8.860000e-105 390.0
4 TraesCS5A01G311300 chr5A 92.251 271 20 1 1 270 37635731 37636001 1.480000e-102 383.0
5 TraesCS5A01G311300 chr5A 95.522 201 8 1 2440 2639 591749131 591749331 1.180000e-83 320.0
6 TraesCS5A01G311300 chr5B 93.546 1379 55 20 566 1923 493631555 493630190 0.000000e+00 2023.0
7 TraesCS5A01G311300 chr5B 95.183 519 22 3 1925 2442 493630028 493629512 0.000000e+00 817.0
8 TraesCS5A01G311300 chr5B 81.216 559 75 19 1000 1546 493160072 493159532 8.730000e-115 424.0
9 TraesCS5A01G311300 chr5B 86.908 359 38 4 1034 1383 492782544 492782902 6.850000e-106 394.0
10 TraesCS5A01G311300 chr5B 97.674 129 3 0 416 544 493631740 493631612 3.420000e-54 222.0
11 TraesCS5A01G311300 chr5B 94.872 39 2 0 1505 1543 493141067 493141105 7.890000e-06 62.1
12 TraesCS5A01G311300 chr5D 94.352 1328 40 17 416 1713 411171599 411170277 0.000000e+00 2004.0
13 TraesCS5A01G311300 chr5D 95.788 736 24 4 1713 2442 411165948 411165214 0.000000e+00 1181.0
14 TraesCS5A01G311300 chr5D 81.932 559 71 18 1000 1546 410843290 410842750 1.860000e-121 446.0
15 TraesCS5A01G311300 chr5D 87.397 365 37 6 1035 1390 410539202 410539566 6.800000e-111 411.0
16 TraesCS5A01G311300 chr5D 96.000 200 7 1 2441 2639 47518521 47518720 9.110000e-85 324.0
17 TraesCS5A01G311300 chr5D 92.632 95 5 1 323 415 411171733 411171639 4.580000e-28 135.0
18 TraesCS5A01G311300 chr6D 93.525 278 17 1 1 277 37665912 37665635 1.890000e-111 412.0
19 TraesCS5A01G311300 chr4B 92.000 275 16 3 1 270 7163886 7163613 5.330000e-102 381.0
20 TraesCS5A01G311300 chr4B 92.000 275 16 3 1 270 7302148 7301875 5.330000e-102 381.0
21 TraesCS5A01G311300 chr4B 91.636 275 17 3 1 270 7210848 7210575 2.480000e-100 375.0
22 TraesCS5A01G311300 chr4B 90.441 272 20 5 1 269 74358017 74357749 1.160000e-93 353.0
23 TraesCS5A01G311300 chr1A 90.441 272 19 7 1 270 16305367 16305633 4.180000e-93 351.0
24 TraesCS5A01G311300 chr2D 96.939 196 6 0 2444 2639 264305298 264305493 1.960000e-86 329.0
25 TraesCS5A01G311300 chr2D 96.000 200 7 1 2441 2639 632067508 632067309 9.110000e-85 324.0
26 TraesCS5A01G311300 chr7B 96.447 197 6 1 2444 2639 600513125 600512929 9.110000e-85 324.0
27 TraesCS5A01G311300 chr7B 88.235 272 27 5 1 268 637645628 637645358 1.180000e-83 320.0
28 TraesCS5A01G311300 chr4D 95.522 201 9 0 2439 2639 320277280 320277480 3.280000e-84 322.0
29 TraesCS5A01G311300 chr2A 95.980 199 6 2 2440 2636 75592096 75592294 3.280000e-84 322.0
30 TraesCS5A01G311300 chr2A 87.410 278 26 7 10 283 612309055 612309327 7.090000e-81 311.0
31 TraesCS5A01G311300 chr4A 95.074 203 8 2 2439 2639 689637761 689637963 4.240000e-83 318.0
32 TraesCS5A01G311300 chrUn 93.780 209 11 2 2432 2639 31721397 31721190 1.970000e-81 313.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G311300 chr5A 523014457 523017095 2638 True 4874.000000 4874 100.000000 1 2639 1 chr5A.!!$R2 2638
1 TraesCS5A01G311300 chr5A 522605032 522605563 531 True 390.000000 390 80.431000 999 1542 1 chr5A.!!$R1 543
2 TraesCS5A01G311300 chr5B 493629512 493631740 2228 True 1020.666667 2023 95.467667 416 2442 3 chr5B.!!$R2 2026
3 TraesCS5A01G311300 chr5B 493159532 493160072 540 True 424.000000 424 81.216000 1000 1546 1 chr5B.!!$R1 546
4 TraesCS5A01G311300 chr5D 411165214 411165948 734 True 1181.000000 1181 95.788000 1713 2442 1 chr5D.!!$R2 729
5 TraesCS5A01G311300 chr5D 411170277 411171733 1456 True 1069.500000 2004 93.492000 323 1713 2 chr5D.!!$R3 1390
6 TraesCS5A01G311300 chr5D 410842750 410843290 540 True 446.000000 446 81.932000 1000 1546 1 chr5D.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.029989 GATAAGGGAGGAGGGGTGGT 60.03 60.0 0.0 0.0 0.0 4.16 F
148 149 0.029989 ATAAGGGAGGAGGGGTGGTC 60.03 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1575 1694 0.678048 GCTCAAAGTCTTCCCGCCAT 60.678 55.000 0.0 0.0 0.0 4.40 R
2015 2303 1.352017 ACAAGCAGTCCATGTCCATCA 59.648 47.619 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.107051 CAGCAGCGCGGGGAAAAG 62.107 66.667 8.83 0.00 0.00 2.27
61 62 2.671619 CAGCGCGGGGAAAAGGAA 60.672 61.111 8.83 0.00 0.00 3.36
62 63 2.359975 AGCGCGGGGAAAAGGAAG 60.360 61.111 8.83 0.00 0.00 3.46
63 64 2.359478 GCGCGGGGAAAAGGAAGA 60.359 61.111 8.83 0.00 0.00 2.87
64 65 1.969589 GCGCGGGGAAAAGGAAGAA 60.970 57.895 8.83 0.00 0.00 2.52
65 66 1.923227 GCGCGGGGAAAAGGAAGAAG 61.923 60.000 8.83 0.00 0.00 2.85
66 67 0.321298 CGCGGGGAAAAGGAAGAAGA 60.321 55.000 0.00 0.00 0.00 2.87
67 68 1.880646 CGCGGGGAAAAGGAAGAAGAA 60.881 52.381 0.00 0.00 0.00 2.52
68 69 2.235891 GCGGGGAAAAGGAAGAAGAAA 58.764 47.619 0.00 0.00 0.00 2.52
69 70 2.826128 GCGGGGAAAAGGAAGAAGAAAT 59.174 45.455 0.00 0.00 0.00 2.17
70 71 4.014406 GCGGGGAAAAGGAAGAAGAAATA 58.986 43.478 0.00 0.00 0.00 1.40
71 72 4.645136 GCGGGGAAAAGGAAGAAGAAATAT 59.355 41.667 0.00 0.00 0.00 1.28
72 73 5.450550 GCGGGGAAAAGGAAGAAGAAATATG 60.451 44.000 0.00 0.00 0.00 1.78
73 74 5.067805 CGGGGAAAAGGAAGAAGAAATATGG 59.932 44.000 0.00 0.00 0.00 2.74
74 75 5.163405 GGGGAAAAGGAAGAAGAAATATGGC 60.163 44.000 0.00 0.00 0.00 4.40
75 76 5.163405 GGGAAAAGGAAGAAGAAATATGGCC 60.163 44.000 0.00 0.00 0.00 5.36
76 77 5.422012 GGAAAAGGAAGAAGAAATATGGCCA 59.578 40.000 8.56 8.56 0.00 5.36
77 78 6.098838 GGAAAAGGAAGAAGAAATATGGCCAT 59.901 38.462 24.45 24.45 0.00 4.40
78 79 6.475596 AAAGGAAGAAGAAATATGGCCATG 57.524 37.500 29.04 0.00 0.00 3.66
79 80 4.477249 AGGAAGAAGAAATATGGCCATGG 58.523 43.478 29.04 7.63 0.00 3.66
80 81 3.575687 GGAAGAAGAAATATGGCCATGGG 59.424 47.826 29.04 0.00 0.00 4.00
81 82 4.473444 GAAGAAGAAATATGGCCATGGGA 58.527 43.478 29.04 9.08 0.00 4.37
82 83 4.541250 AGAAGAAATATGGCCATGGGAA 57.459 40.909 29.04 8.65 0.00 3.97
83 84 4.882559 AGAAGAAATATGGCCATGGGAAA 58.117 39.130 29.04 8.21 0.00 3.13
84 85 4.651045 AGAAGAAATATGGCCATGGGAAAC 59.349 41.667 29.04 13.75 0.00 2.78
85 86 2.958355 AGAAATATGGCCATGGGAAACG 59.042 45.455 29.04 0.00 0.00 3.60
86 87 2.746279 AATATGGCCATGGGAAACGA 57.254 45.000 29.04 5.67 0.00 3.85
87 88 2.978156 ATATGGCCATGGGAAACGAT 57.022 45.000 29.04 8.07 0.00 3.73
88 89 1.979855 TATGGCCATGGGAAACGATG 58.020 50.000 29.04 0.00 45.19 3.84
89 90 0.033208 ATGGCCATGGGAAACGATGT 60.033 50.000 20.04 0.00 44.23 3.06
90 91 0.964860 TGGCCATGGGAAACGATGTG 60.965 55.000 15.13 0.00 44.23 3.21
91 92 0.965363 GGCCATGGGAAACGATGTGT 60.965 55.000 15.13 0.00 44.23 3.72
92 93 0.451783 GCCATGGGAAACGATGTGTC 59.548 55.000 15.13 0.00 44.23 3.67
93 94 1.950484 GCCATGGGAAACGATGTGTCT 60.950 52.381 15.13 0.00 44.23 3.41
94 95 1.739466 CCATGGGAAACGATGTGTCTG 59.261 52.381 2.85 0.00 44.23 3.51
95 96 1.739466 CATGGGAAACGATGTGTCTGG 59.261 52.381 0.00 0.00 41.18 3.86
96 97 1.052617 TGGGAAACGATGTGTCTGGA 58.947 50.000 0.00 0.00 0.00 3.86
97 98 1.001974 TGGGAAACGATGTGTCTGGAG 59.998 52.381 0.00 0.00 0.00 3.86
98 99 1.079503 GGAAACGATGTGTCTGGAGC 58.920 55.000 0.00 0.00 0.00 4.70
99 100 1.338200 GGAAACGATGTGTCTGGAGCT 60.338 52.381 0.00 0.00 0.00 4.09
100 101 2.094182 GGAAACGATGTGTCTGGAGCTA 60.094 50.000 0.00 0.00 0.00 3.32
101 102 3.585862 GAAACGATGTGTCTGGAGCTAA 58.414 45.455 0.00 0.00 0.00 3.09
102 103 2.949451 ACGATGTGTCTGGAGCTAAG 57.051 50.000 0.00 0.00 0.00 2.18
103 104 2.447443 ACGATGTGTCTGGAGCTAAGA 58.553 47.619 0.00 0.00 0.00 2.10
104 105 2.425312 ACGATGTGTCTGGAGCTAAGAG 59.575 50.000 0.00 0.00 0.00 2.85
105 106 2.685388 CGATGTGTCTGGAGCTAAGAGA 59.315 50.000 0.00 0.00 0.00 3.10
106 107 3.317711 CGATGTGTCTGGAGCTAAGAGAT 59.682 47.826 0.00 0.00 0.00 2.75
107 108 4.619973 GATGTGTCTGGAGCTAAGAGATG 58.380 47.826 0.00 0.00 0.00 2.90
108 109 3.701664 TGTGTCTGGAGCTAAGAGATGA 58.298 45.455 0.00 0.00 0.00 2.92
109 110 4.089361 TGTGTCTGGAGCTAAGAGATGAA 58.911 43.478 0.00 0.00 0.00 2.57
110 111 4.159321 TGTGTCTGGAGCTAAGAGATGAAG 59.841 45.833 0.00 0.00 0.00 3.02
111 112 3.703556 TGTCTGGAGCTAAGAGATGAAGG 59.296 47.826 0.00 0.00 0.00 3.46
112 113 2.697751 TCTGGAGCTAAGAGATGAAGGC 59.302 50.000 0.00 0.00 0.00 4.35
113 114 2.433604 CTGGAGCTAAGAGATGAAGGCA 59.566 50.000 0.00 0.00 0.00 4.75
114 115 2.433604 TGGAGCTAAGAGATGAAGGCAG 59.566 50.000 0.00 0.00 0.00 4.85
115 116 2.482864 GAGCTAAGAGATGAAGGCAGC 58.517 52.381 0.00 0.00 0.00 5.25
116 117 1.836166 AGCTAAGAGATGAAGGCAGCA 59.164 47.619 0.00 0.00 31.43 4.41
117 118 2.158928 AGCTAAGAGATGAAGGCAGCAG 60.159 50.000 0.00 0.00 31.43 4.24
118 119 2.419851 GCTAAGAGATGAAGGCAGCAGT 60.420 50.000 0.00 0.00 31.43 4.40
119 120 2.875094 AAGAGATGAAGGCAGCAGTT 57.125 45.000 0.00 0.00 31.43 3.16
120 121 3.988976 AAGAGATGAAGGCAGCAGTTA 57.011 42.857 0.00 0.00 31.43 2.24
121 122 3.540314 AGAGATGAAGGCAGCAGTTAG 57.460 47.619 0.00 0.00 31.43 2.34
122 123 2.170187 AGAGATGAAGGCAGCAGTTAGG 59.830 50.000 0.00 0.00 31.43 2.69
123 124 1.211457 AGATGAAGGCAGCAGTTAGGG 59.789 52.381 0.00 0.00 31.43 3.53
124 125 1.210478 GATGAAGGCAGCAGTTAGGGA 59.790 52.381 0.00 0.00 0.00 4.20
125 126 1.064003 TGAAGGCAGCAGTTAGGGAA 58.936 50.000 0.00 0.00 0.00 3.97
126 127 1.423541 TGAAGGCAGCAGTTAGGGAAA 59.576 47.619 0.00 0.00 0.00 3.13
127 128 2.158534 TGAAGGCAGCAGTTAGGGAAAA 60.159 45.455 0.00 0.00 0.00 2.29
128 129 2.206576 AGGCAGCAGTTAGGGAAAAG 57.793 50.000 0.00 0.00 0.00 2.27
129 130 1.705186 AGGCAGCAGTTAGGGAAAAGA 59.295 47.619 0.00 0.00 0.00 2.52
130 131 2.310052 AGGCAGCAGTTAGGGAAAAGAT 59.690 45.455 0.00 0.00 0.00 2.40
131 132 3.523564 AGGCAGCAGTTAGGGAAAAGATA 59.476 43.478 0.00 0.00 0.00 1.98
132 133 4.018415 AGGCAGCAGTTAGGGAAAAGATAA 60.018 41.667 0.00 0.00 0.00 1.75
133 134 4.336713 GGCAGCAGTTAGGGAAAAGATAAG 59.663 45.833 0.00 0.00 0.00 1.73
134 135 4.336713 GCAGCAGTTAGGGAAAAGATAAGG 59.663 45.833 0.00 0.00 0.00 2.69
135 136 4.884164 CAGCAGTTAGGGAAAAGATAAGGG 59.116 45.833 0.00 0.00 0.00 3.95
136 137 4.788617 AGCAGTTAGGGAAAAGATAAGGGA 59.211 41.667 0.00 0.00 0.00 4.20
137 138 5.104318 AGCAGTTAGGGAAAAGATAAGGGAG 60.104 44.000 0.00 0.00 0.00 4.30
138 139 5.685728 CAGTTAGGGAAAAGATAAGGGAGG 58.314 45.833 0.00 0.00 0.00 4.30
139 140 5.428783 CAGTTAGGGAAAAGATAAGGGAGGA 59.571 44.000 0.00 0.00 0.00 3.71
140 141 5.668080 AGTTAGGGAAAAGATAAGGGAGGAG 59.332 44.000 0.00 0.00 0.00 3.69
141 142 3.398490 AGGGAAAAGATAAGGGAGGAGG 58.602 50.000 0.00 0.00 0.00 4.30
142 143 2.443632 GGGAAAAGATAAGGGAGGAGGG 59.556 54.545 0.00 0.00 0.00 4.30
143 144 2.443632 GGAAAAGATAAGGGAGGAGGGG 59.556 54.545 0.00 0.00 0.00 4.79
144 145 2.993604 AAAGATAAGGGAGGAGGGGT 57.006 50.000 0.00 0.00 0.00 4.95
145 146 2.198334 AAGATAAGGGAGGAGGGGTG 57.802 55.000 0.00 0.00 0.00 4.61
146 147 0.269173 AGATAAGGGAGGAGGGGTGG 59.731 60.000 0.00 0.00 0.00 4.61
147 148 0.029989 GATAAGGGAGGAGGGGTGGT 60.030 60.000 0.00 0.00 0.00 4.16
148 149 0.029989 ATAAGGGAGGAGGGGTGGTC 60.030 60.000 0.00 0.00 0.00 4.02
149 150 2.190904 TAAGGGAGGAGGGGTGGTCC 62.191 65.000 0.00 0.00 0.00 4.46
150 151 4.348495 GGGAGGAGGGGTGGTCCA 62.348 72.222 0.00 0.00 36.43 4.02
151 152 3.009714 GGAGGAGGGGTGGTCCAC 61.010 72.222 14.13 14.13 36.43 4.02
152 153 3.391382 GAGGAGGGGTGGTCCACG 61.391 72.222 15.93 0.00 43.05 4.94
153 154 4.250170 AGGAGGGGTGGTCCACGT 62.250 66.667 15.93 2.88 43.05 4.49
154 155 4.016706 GGAGGGGTGGTCCACGTG 62.017 72.222 15.93 9.08 43.05 4.49
155 156 4.016706 GAGGGGTGGTCCACGTGG 62.017 72.222 29.26 29.26 43.05 4.94
165 166 4.904590 CCACGTGGGGCCCAACAA 62.905 66.667 30.70 0.00 34.18 2.83
166 167 2.600173 CACGTGGGGCCCAACAAT 60.600 61.111 30.70 13.88 34.18 2.71
167 168 1.303724 CACGTGGGGCCCAACAATA 60.304 57.895 30.70 0.00 34.18 1.90
168 169 0.896019 CACGTGGGGCCCAACAATAA 60.896 55.000 30.70 0.00 34.18 1.40
169 170 0.178958 ACGTGGGGCCCAACAATAAA 60.179 50.000 30.70 0.00 34.18 1.40
170 171 0.245266 CGTGGGGCCCAACAATAAAC 59.755 55.000 30.70 11.51 34.18 2.01
171 172 1.343069 GTGGGGCCCAACAATAAACA 58.657 50.000 30.70 5.89 34.18 2.83
172 173 1.275010 GTGGGGCCCAACAATAAACAG 59.725 52.381 30.70 0.00 34.18 3.16
173 174 0.901827 GGGGCCCAACAATAAACAGG 59.098 55.000 26.86 0.00 0.00 4.00
174 175 1.551329 GGGGCCCAACAATAAACAGGA 60.551 52.381 26.86 0.00 0.00 3.86
175 176 1.824852 GGGCCCAACAATAAACAGGAG 59.175 52.381 19.95 0.00 0.00 3.69
176 177 2.525368 GGCCCAACAATAAACAGGAGT 58.475 47.619 0.00 0.00 0.00 3.85
177 178 2.492088 GGCCCAACAATAAACAGGAGTC 59.508 50.000 0.00 0.00 0.00 3.36
178 179 3.421844 GCCCAACAATAAACAGGAGTCT 58.578 45.455 0.00 0.00 0.00 3.24
179 180 3.440522 GCCCAACAATAAACAGGAGTCTC 59.559 47.826 0.00 0.00 0.00 3.36
180 181 3.684788 CCCAACAATAAACAGGAGTCTCG 59.315 47.826 0.00 0.00 0.00 4.04
181 182 3.125316 CCAACAATAAACAGGAGTCTCGC 59.875 47.826 0.00 0.00 0.00 5.03
182 183 2.607187 ACAATAAACAGGAGTCTCGCG 58.393 47.619 0.00 0.00 0.00 5.87
183 184 1.324736 CAATAAACAGGAGTCTCGCGC 59.675 52.381 0.00 0.00 0.00 6.86
184 185 0.525668 ATAAACAGGAGTCTCGCGCG 60.526 55.000 26.76 26.76 0.00 6.86
185 186 2.537792 TAAACAGGAGTCTCGCGCGG 62.538 60.000 31.69 20.60 0.00 6.46
206 207 3.869272 GCGTCTTGGGCGAGCATG 61.869 66.667 0.00 0.00 0.00 4.06
207 208 3.197790 CGTCTTGGGCGAGCATGG 61.198 66.667 0.00 0.00 0.00 3.66
208 209 2.825836 GTCTTGGGCGAGCATGGG 60.826 66.667 0.00 0.00 0.00 4.00
209 210 4.113815 TCTTGGGCGAGCATGGGG 62.114 66.667 0.00 0.00 0.00 4.96
265 266 4.572571 TGCCCGGCCTGAAACGTT 62.573 61.111 7.03 0.00 0.00 3.99
266 267 3.292159 GCCCGGCCTGAAACGTTT 61.292 61.111 14.57 14.57 0.00 3.60
267 268 2.951458 CCCGGCCTGAAACGTTTC 59.049 61.111 29.72 29.72 37.69 2.78
268 269 2.622962 CCCGGCCTGAAACGTTTCC 61.623 63.158 32.14 19.63 36.36 3.13
269 270 2.622962 CCGGCCTGAAACGTTTCCC 61.623 63.158 32.14 25.24 36.36 3.97
270 271 1.894756 CGGCCTGAAACGTTTCCCA 60.895 57.895 32.14 18.08 36.36 4.37
271 272 1.448922 CGGCCTGAAACGTTTCCCAA 61.449 55.000 32.14 16.88 36.36 4.12
272 273 0.747852 GGCCTGAAACGTTTCCCAAA 59.252 50.000 32.14 16.55 36.36 3.28
273 274 1.137282 GGCCTGAAACGTTTCCCAAAA 59.863 47.619 32.14 16.22 36.36 2.44
274 275 2.224185 GGCCTGAAACGTTTCCCAAAAT 60.224 45.455 32.14 1.26 36.36 1.82
275 276 3.006003 GGCCTGAAACGTTTCCCAAAATA 59.994 43.478 32.14 14.92 36.36 1.40
276 277 4.501743 GGCCTGAAACGTTTCCCAAAATAA 60.502 41.667 32.14 14.27 36.36 1.40
277 278 4.446385 GCCTGAAACGTTTCCCAAAATAAC 59.554 41.667 32.14 9.83 36.36 1.89
279 280 4.608951 TGAAACGTTTCCCAAAATAACGG 58.391 39.130 32.14 0.00 46.38 4.44
280 281 3.646611 AACGTTTCCCAAAATAACGGG 57.353 42.857 10.73 0.00 46.38 5.28
281 282 2.585330 ACGTTTCCCAAAATAACGGGT 58.415 42.857 10.73 0.00 46.38 5.28
282 283 2.957680 ACGTTTCCCAAAATAACGGGTT 59.042 40.909 10.73 0.00 46.38 4.11
283 284 3.243468 ACGTTTCCCAAAATAACGGGTTG 60.243 43.478 10.73 0.00 46.38 3.77
284 285 3.243468 CGTTTCCCAAAATAACGGGTTGT 60.243 43.478 0.00 0.00 43.57 3.32
285 286 4.695396 GTTTCCCAAAATAACGGGTTGTT 58.305 39.130 0.00 0.00 43.57 2.83
286 287 4.323553 TTCCCAAAATAACGGGTTGTTG 57.676 40.909 0.00 0.00 43.57 3.33
287 288 3.563223 TCCCAAAATAACGGGTTGTTGA 58.437 40.909 0.00 0.00 43.57 3.18
288 289 4.153411 TCCCAAAATAACGGGTTGTTGAT 58.847 39.130 0.00 0.00 43.57 2.57
289 290 4.021894 TCCCAAAATAACGGGTTGTTGATG 60.022 41.667 0.00 0.00 43.57 3.07
290 291 4.021894 CCCAAAATAACGGGTTGTTGATGA 60.022 41.667 7.94 0.00 42.01 2.92
291 292 4.920927 CCAAAATAACGGGTTGTTGATGAC 59.079 41.667 7.94 0.00 42.01 3.06
292 293 5.278758 CCAAAATAACGGGTTGTTGATGACT 60.279 40.000 7.94 0.00 42.01 3.41
293 294 5.622770 AAATAACGGGTTGTTGATGACTC 57.377 39.130 0.00 0.00 42.01 3.36
294 295 1.508632 AACGGGTTGTTGATGACTCG 58.491 50.000 0.00 0.00 44.91 4.18
295 296 0.949105 ACGGGTTGTTGATGACTCGC 60.949 55.000 0.00 0.00 43.27 5.03
296 297 0.948623 CGGGTTGTTGATGACTCGCA 60.949 55.000 0.00 0.00 32.51 5.10
297 298 1.234821 GGGTTGTTGATGACTCGCAA 58.765 50.000 0.00 0.00 0.00 4.85
298 299 1.606668 GGGTTGTTGATGACTCGCAAA 59.393 47.619 0.00 0.00 0.00 3.68
299 300 2.228822 GGGTTGTTGATGACTCGCAAAT 59.771 45.455 0.00 0.00 0.00 2.32
300 301 3.438781 GGGTTGTTGATGACTCGCAAATA 59.561 43.478 0.00 0.00 0.00 1.40
301 302 4.083003 GGGTTGTTGATGACTCGCAAATAA 60.083 41.667 0.00 0.00 0.00 1.40
302 303 5.393027 GGGTTGTTGATGACTCGCAAATAAT 60.393 40.000 0.00 0.00 0.00 1.28
303 304 6.092748 GGTTGTTGATGACTCGCAAATAATT 58.907 36.000 0.00 0.00 0.00 1.40
304 305 6.586082 GGTTGTTGATGACTCGCAAATAATTT 59.414 34.615 0.00 0.00 0.00 1.82
305 306 7.201350 GGTTGTTGATGACTCGCAAATAATTTC 60.201 37.037 0.00 0.00 0.00 2.17
306 307 6.907741 TGTTGATGACTCGCAAATAATTTCA 58.092 32.000 0.00 0.00 0.00 2.69
307 308 7.537715 TGTTGATGACTCGCAAATAATTTCAT 58.462 30.769 0.00 0.00 0.00 2.57
308 309 8.028354 TGTTGATGACTCGCAAATAATTTCATT 58.972 29.630 0.00 0.00 0.00 2.57
309 310 8.526681 GTTGATGACTCGCAAATAATTTCATTC 58.473 33.333 0.00 0.00 0.00 2.67
310 311 6.906678 TGATGACTCGCAAATAATTTCATTCG 59.093 34.615 0.00 0.00 0.00 3.34
311 312 5.027737 TGACTCGCAAATAATTTCATTCGC 58.972 37.500 0.00 0.00 0.00 4.70
312 313 4.980590 ACTCGCAAATAATTTCATTCGCA 58.019 34.783 0.00 0.00 0.00 5.10
313 314 5.398169 ACTCGCAAATAATTTCATTCGCAA 58.602 33.333 0.00 0.00 0.00 4.85
314 315 5.861251 ACTCGCAAATAATTTCATTCGCAAA 59.139 32.000 0.00 0.00 0.00 3.68
315 316 6.364706 ACTCGCAAATAATTTCATTCGCAAAA 59.635 30.769 0.00 0.00 0.00 2.44
316 317 7.095857 ACTCGCAAATAATTTCATTCGCAAAAA 60.096 29.630 0.00 0.00 0.00 1.94
363 364 3.314080 TCCAAAAACAGGCGTAGTCTTTG 59.686 43.478 0.00 0.00 45.33 2.77
366 367 1.779569 AACAGGCGTAGTCTTTGACG 58.220 50.000 0.00 0.00 45.33 4.35
382 385 2.025898 TGACGTGTGGTGAGACTAACA 58.974 47.619 0.00 0.00 0.00 2.41
460 502 2.302260 TGTCACAAAAATCCTTGCCGA 58.698 42.857 0.00 0.00 0.00 5.54
479 521 2.983136 CGATATAAGCGAGCTGTCCTTG 59.017 50.000 0.00 0.00 0.00 3.61
554 619 1.868251 CGCTCTCAGTTACGTCGCC 60.868 63.158 0.00 0.00 0.00 5.54
596 679 3.480470 CCCGAAAGATATGCCAAGATGT 58.520 45.455 0.00 0.00 0.00 3.06
636 719 0.388907 CGCCACAAAAGATGCTTGGG 60.389 55.000 0.00 0.00 0.00 4.12
699 782 8.572185 GGAAGAAAAGAAAAAGATCTAGTGCTT 58.428 33.333 0.00 0.00 0.00 3.91
746 831 3.496692 GGTGCAGATTATGTGGCCAGATA 60.497 47.826 18.29 18.29 0.00 1.98
840 925 2.261671 CTACGGCGAGCAACCACT 59.738 61.111 16.62 0.00 0.00 4.00
856 941 8.830915 AGCAACCACTACTCAGCTATATATAT 57.169 34.615 0.00 0.00 0.00 0.86
857 942 9.922477 AGCAACCACTACTCAGCTATATATATA 57.078 33.333 2.49 2.49 0.00 0.86
898 983 3.394836 AAGCCTCACCGCTCCTCC 61.395 66.667 0.00 0.00 38.44 4.30
960 1058 4.571176 AGCTAAACTCGCTGCTTAATTACC 59.429 41.667 0.00 0.00 36.15 2.85
970 1068 2.285977 GCTTAATTACCCCACAGTCGG 58.714 52.381 0.00 0.00 0.00 4.79
1011 1109 4.630785 CGATCGATGGACGCCGCT 62.631 66.667 10.26 0.00 42.26 5.52
1056 1154 2.522436 AGGACGGTGTGGTCGGAA 60.522 61.111 0.00 0.00 37.82 4.30
1191 1289 2.286732 ATGAGGGGCTCCAGGCTT 60.287 61.111 4.79 0.00 41.46 4.35
1353 1460 0.471617 CGGCCAAGGAGATCAAGGAT 59.528 55.000 2.24 0.00 0.00 3.24
1460 1573 2.093447 ACGAGAAGGAAATCGATGGCTT 60.093 45.455 0.00 0.00 41.40 4.35
1588 1707 1.613630 AGACCATGGCGGGAAGACT 60.614 57.895 13.04 0.00 40.22 3.24
1590 1709 0.322546 GACCATGGCGGGAAGACTTT 60.323 55.000 13.04 0.00 40.22 2.66
1639 1758 4.436242 TGGAGCTACTTGTTCGACTAAG 57.564 45.455 0.00 6.35 0.00 2.18
1640 1759 3.180613 GGAGCTACTTGTTCGACTAAGC 58.819 50.000 7.55 1.57 0.00 3.09
1648 1773 6.913873 ACTTGTTCGACTAAGCAGTTAAAA 57.086 33.333 7.55 0.00 34.21 1.52
1653 1778 7.754625 TGTTCGACTAAGCAGTTAAAAGTTTT 58.245 30.769 6.06 6.06 34.21 2.43
1658 1785 9.366513 CGACTAAGCAGTTAAAAGTTTTTAGAC 57.633 33.333 6.10 3.98 34.21 2.59
1668 1795 9.218359 GTTAAAAGTTTTTAGACGGTTTCTCTG 57.782 33.333 6.10 0.00 35.55 3.35
1705 1832 2.059756 ATGGGAGGAAACAGAAGGGA 57.940 50.000 0.00 0.00 0.00 4.20
1912 2040 1.579698 CTCAAGCACTCCATGATCGG 58.420 55.000 0.00 0.00 0.00 4.18
1923 2051 5.752472 CACTCCATGATCGGCATAAGATATC 59.248 44.000 0.00 0.00 34.82 1.63
1970 2258 7.090173 CAGAAAAGACACTTCAAAAACAGGAA 58.910 34.615 0.00 0.00 0.00 3.36
1979 2267 9.150348 ACACTTCAAAAACAGGAAAAATACTTG 57.850 29.630 0.00 0.00 0.00 3.16
2122 2410 4.333926 GGGGTATAACCGTATAGTAGCGAG 59.666 50.000 0.00 0.00 39.83 5.03
2159 2447 9.653287 TTCTAGTGAATAAAGAATGTGTACCTG 57.347 33.333 0.00 0.00 0.00 4.00
2174 2462 4.513692 GTGTACCTGCGCAATTATTATGGA 59.486 41.667 13.05 0.00 0.00 3.41
2307 2601 3.390967 TGACAAAGATGGTCTTGGACTGA 59.609 43.478 1.26 0.00 36.71 3.41
2385 2679 8.830741 CCAGAAATATCTTAAGATCAGGGGTAT 58.169 37.037 21.17 5.13 36.05 2.73
2388 2682 7.574021 AATATCTTAAGATCAGGGGTATGCA 57.426 36.000 21.17 0.06 36.05 3.96
2435 2729 7.939588 TGCTATTAGCTCATGTAGTTAGAGAGA 59.060 37.037 16.29 0.00 42.97 3.10
2442 2736 6.040391 GCTCATGTAGTTAGAGAGATGGAACT 59.960 42.308 0.00 0.00 36.21 3.01
2443 2737 7.417342 GCTCATGTAGTTAGAGAGATGGAACTT 60.417 40.741 0.00 0.00 34.15 2.66
2444 2738 8.367660 TCATGTAGTTAGAGAGATGGAACTTT 57.632 34.615 0.00 0.00 34.15 2.66
2445 2739 8.816894 TCATGTAGTTAGAGAGATGGAACTTTT 58.183 33.333 0.00 0.00 34.15 2.27
2446 2740 9.442047 CATGTAGTTAGAGAGATGGAACTTTTT 57.558 33.333 0.00 0.00 34.15 1.94
2469 2763 4.748277 TTAGAAAAGTAGGATGACCCCG 57.252 45.455 0.00 0.00 36.73 5.73
2470 2764 1.838077 AGAAAAGTAGGATGACCCCGG 59.162 52.381 0.00 0.00 36.73 5.73
2471 2765 0.255033 AAAAGTAGGATGACCCCGGC 59.745 55.000 0.00 0.00 36.73 6.13
2472 2766 1.632965 AAAGTAGGATGACCCCGGCC 61.633 60.000 0.00 0.00 36.73 6.13
2473 2767 2.446036 GTAGGATGACCCCGGCCT 60.446 66.667 0.00 0.00 36.73 5.19
2474 2768 2.122989 TAGGATGACCCCGGCCTC 60.123 66.667 0.00 0.00 36.73 4.70
2475 2769 2.711899 TAGGATGACCCCGGCCTCT 61.712 63.158 0.00 0.00 36.73 3.69
2476 2770 2.946988 TAGGATGACCCCGGCCTCTG 62.947 65.000 0.00 0.00 36.73 3.35
2477 2771 4.554036 GATGACCCCGGCCTCTGC 62.554 72.222 0.00 0.00 0.00 4.26
2480 2774 4.554036 GACCCCGGCCTCTGCATC 62.554 72.222 0.00 0.00 40.13 3.91
2482 2776 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2483 2777 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
2484 2778 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
2485 2779 3.473647 CGGCCTCTGCATCTGGGA 61.474 66.667 0.00 0.00 40.13 4.37
2486 2780 2.509916 GGCCTCTGCATCTGGGAG 59.490 66.667 0.00 0.00 40.13 4.30
2487 2781 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
2488 2782 1.417288 GGCCTCTGCATCTGGGAGAT 61.417 60.000 0.00 0.00 43.58 2.75
2496 2790 2.090400 CATCTGGGAGATGCATACGG 57.910 55.000 0.00 0.00 44.69 4.02
2497 2791 0.322975 ATCTGGGAGATGCATACGGC 59.677 55.000 0.00 0.00 45.13 5.68
2498 2792 1.302033 CTGGGAGATGCATACGGCC 60.302 63.158 0.00 0.00 43.89 6.13
2499 2793 2.043604 CTGGGAGATGCATACGGCCA 62.044 60.000 2.24 0.61 43.89 5.36
2500 2794 1.598130 GGGAGATGCATACGGCCAC 60.598 63.158 2.24 0.00 43.89 5.01
2501 2795 1.447643 GGAGATGCATACGGCCACT 59.552 57.895 2.24 0.00 43.89 4.00
2502 2796 0.179045 GGAGATGCATACGGCCACTT 60.179 55.000 2.24 0.00 43.89 3.16
2503 2797 1.668419 GAGATGCATACGGCCACTTT 58.332 50.000 2.24 0.00 43.89 2.66
2504 2798 2.484770 GGAGATGCATACGGCCACTTTA 60.485 50.000 2.24 0.00 43.89 1.85
2505 2799 3.403038 GAGATGCATACGGCCACTTTAT 58.597 45.455 2.24 0.00 43.89 1.40
2506 2800 3.815401 GAGATGCATACGGCCACTTTATT 59.185 43.478 2.24 0.00 43.89 1.40
2507 2801 3.565482 AGATGCATACGGCCACTTTATTG 59.435 43.478 2.24 0.00 43.89 1.90
2508 2802 2.992593 TGCATACGGCCACTTTATTGA 58.007 42.857 2.24 0.00 43.89 2.57
2509 2803 3.550820 TGCATACGGCCACTTTATTGAT 58.449 40.909 2.24 0.00 43.89 2.57
2510 2804 3.951037 TGCATACGGCCACTTTATTGATT 59.049 39.130 2.24 0.00 43.89 2.57
2511 2805 5.126779 TGCATACGGCCACTTTATTGATTA 58.873 37.500 2.24 0.00 43.89 1.75
2512 2806 5.767665 TGCATACGGCCACTTTATTGATTAT 59.232 36.000 2.24 0.00 43.89 1.28
2513 2807 6.264292 TGCATACGGCCACTTTATTGATTATT 59.736 34.615 2.24 0.00 43.89 1.40
2514 2808 7.145323 GCATACGGCCACTTTATTGATTATTT 58.855 34.615 2.24 0.00 36.11 1.40
2515 2809 7.651704 GCATACGGCCACTTTATTGATTATTTT 59.348 33.333 2.24 0.00 36.11 1.82
2516 2810 9.528018 CATACGGCCACTTTATTGATTATTTTT 57.472 29.630 2.24 0.00 0.00 1.94
2517 2811 7.826260 ACGGCCACTTTATTGATTATTTTTG 57.174 32.000 2.24 0.00 0.00 2.44
2518 2812 7.607250 ACGGCCACTTTATTGATTATTTTTGA 58.393 30.769 2.24 0.00 0.00 2.69
2519 2813 7.759433 ACGGCCACTTTATTGATTATTTTTGAG 59.241 33.333 2.24 0.00 0.00 3.02
2520 2814 7.222611 CGGCCACTTTATTGATTATTTTTGAGG 59.777 37.037 2.24 0.00 0.00 3.86
2521 2815 8.257306 GGCCACTTTATTGATTATTTTTGAGGA 58.743 33.333 0.00 0.00 0.00 3.71
2522 2816 9.087424 GCCACTTTATTGATTATTTTTGAGGAC 57.913 33.333 0.00 0.00 0.00 3.85
2523 2817 9.586435 CCACTTTATTGATTATTTTTGAGGACC 57.414 33.333 0.00 0.00 0.00 4.46
2532 2826 9.362151 TGATTATTTTTGAGGACCTTACAAAGT 57.638 29.630 8.04 5.26 35.48 2.66
2538 2832 9.629878 TTTTTGAGGACCTTACAAAGTATTACA 57.370 29.630 8.04 0.00 35.48 2.41
2539 2833 9.629878 TTTTGAGGACCTTACAAAGTATTACAA 57.370 29.630 8.04 0.00 35.48 2.41
2540 2834 8.611654 TTGAGGACCTTACAAAGTATTACAAC 57.388 34.615 0.00 0.00 0.00 3.32
2541 2835 7.737869 TGAGGACCTTACAAAGTATTACAACA 58.262 34.615 0.00 0.00 0.00 3.33
2542 2836 8.212312 TGAGGACCTTACAAAGTATTACAACAA 58.788 33.333 0.00 0.00 0.00 2.83
2543 2837 9.227777 GAGGACCTTACAAAGTATTACAACAAT 57.772 33.333 0.00 0.00 0.00 2.71
2544 2838 9.010029 AGGACCTTACAAAGTATTACAACAATG 57.990 33.333 0.00 0.00 0.00 2.82
2545 2839 8.789762 GGACCTTACAAAGTATTACAACAATGT 58.210 33.333 0.00 0.00 43.74 2.71
2546 2840 9.607285 GACCTTACAAAGTATTACAACAATGTG 57.393 33.333 0.00 0.00 40.84 3.21
2547 2841 8.079809 ACCTTACAAAGTATTACAACAATGTGC 58.920 33.333 0.00 0.00 40.84 4.57
2548 2842 7.540745 CCTTACAAAGTATTACAACAATGTGCC 59.459 37.037 0.00 0.00 40.84 5.01
2549 2843 6.648879 ACAAAGTATTACAACAATGTGCCT 57.351 33.333 0.00 0.00 40.84 4.75
2550 2844 7.753309 ACAAAGTATTACAACAATGTGCCTA 57.247 32.000 0.00 0.00 40.84 3.93
2551 2845 8.172352 ACAAAGTATTACAACAATGTGCCTAA 57.828 30.769 0.00 0.00 40.84 2.69
2552 2846 8.634444 ACAAAGTATTACAACAATGTGCCTAAA 58.366 29.630 0.00 0.00 40.84 1.85
2553 2847 9.638239 CAAAGTATTACAACAATGTGCCTAAAT 57.362 29.630 0.00 0.00 40.84 1.40
2554 2848 9.855021 AAAGTATTACAACAATGTGCCTAAATC 57.145 29.630 0.00 0.00 40.84 2.17
2555 2849 7.996385 AGTATTACAACAATGTGCCTAAATCC 58.004 34.615 0.00 0.00 40.84 3.01
2556 2850 6.849085 ATTACAACAATGTGCCTAAATCCA 57.151 33.333 0.00 0.00 40.84 3.41
2557 2851 4.519540 ACAACAATGTGCCTAAATCCAC 57.480 40.909 0.00 0.00 38.69 4.02
2558 2852 3.258123 ACAACAATGTGCCTAAATCCACC 59.742 43.478 0.00 0.00 38.69 4.61
2559 2853 3.168035 ACAATGTGCCTAAATCCACCA 57.832 42.857 0.00 0.00 0.00 4.17
2560 2854 3.711863 ACAATGTGCCTAAATCCACCAT 58.288 40.909 0.00 0.00 0.00 3.55
2561 2855 3.701040 ACAATGTGCCTAAATCCACCATC 59.299 43.478 0.00 0.00 0.00 3.51
2562 2856 3.956199 CAATGTGCCTAAATCCACCATCT 59.044 43.478 0.00 0.00 0.00 2.90
2563 2857 3.737559 TGTGCCTAAATCCACCATCTT 57.262 42.857 0.00 0.00 0.00 2.40
2564 2858 3.355378 TGTGCCTAAATCCACCATCTTG 58.645 45.455 0.00 0.00 0.00 3.02
2565 2859 2.689983 GTGCCTAAATCCACCATCTTGG 59.310 50.000 0.00 0.00 45.02 3.61
2566 2860 1.683385 GCCTAAATCCACCATCTTGGC 59.317 52.381 0.00 0.00 42.67 4.52
2567 2861 2.949963 GCCTAAATCCACCATCTTGGCA 60.950 50.000 0.00 0.00 42.67 4.92
2568 2862 3.364549 CCTAAATCCACCATCTTGGCAA 58.635 45.455 0.00 0.00 42.67 4.52
2569 2863 3.131046 CCTAAATCCACCATCTTGGCAAC 59.869 47.826 0.00 0.00 42.67 4.17
2581 2875 2.539003 TGGCAACACATGTCGCTAC 58.461 52.632 0.00 0.00 46.17 3.58
2582 2876 0.034756 TGGCAACACATGTCGCTACT 59.965 50.000 0.00 0.00 46.17 2.57
2583 2877 0.721718 GGCAACACATGTCGCTACTC 59.278 55.000 0.00 0.00 0.00 2.59
2584 2878 0.721718 GCAACACATGTCGCTACTCC 59.278 55.000 0.00 0.00 0.00 3.85
2585 2879 1.673033 GCAACACATGTCGCTACTCCT 60.673 52.381 0.00 0.00 0.00 3.69
2586 2880 2.416836 GCAACACATGTCGCTACTCCTA 60.417 50.000 0.00 0.00 0.00 2.94
2587 2881 3.738281 GCAACACATGTCGCTACTCCTAT 60.738 47.826 0.00 0.00 0.00 2.57
2588 2882 3.992260 ACACATGTCGCTACTCCTATC 57.008 47.619 0.00 0.00 0.00 2.08
2589 2883 2.623889 ACACATGTCGCTACTCCTATCC 59.376 50.000 0.00 0.00 0.00 2.59
2590 2884 2.623416 CACATGTCGCTACTCCTATCCA 59.377 50.000 0.00 0.00 0.00 3.41
2591 2885 3.068165 CACATGTCGCTACTCCTATCCAA 59.932 47.826 0.00 0.00 0.00 3.53
2592 2886 3.704566 ACATGTCGCTACTCCTATCCAAA 59.295 43.478 0.00 0.00 0.00 3.28
2593 2887 4.161565 ACATGTCGCTACTCCTATCCAAAA 59.838 41.667 0.00 0.00 0.00 2.44
2594 2888 4.811969 TGTCGCTACTCCTATCCAAAAA 57.188 40.909 0.00 0.00 0.00 1.94
2595 2889 4.755411 TGTCGCTACTCCTATCCAAAAAG 58.245 43.478 0.00 0.00 0.00 2.27
2596 2890 4.464951 TGTCGCTACTCCTATCCAAAAAGA 59.535 41.667 0.00 0.00 0.00 2.52
2597 2891 5.128827 TGTCGCTACTCCTATCCAAAAAGAT 59.871 40.000 0.00 0.00 0.00 2.40
2598 2892 5.463724 GTCGCTACTCCTATCCAAAAAGATG 59.536 44.000 0.00 0.00 0.00 2.90
2599 2893 5.362717 TCGCTACTCCTATCCAAAAAGATGA 59.637 40.000 0.00 0.00 0.00 2.92
2600 2894 6.049149 CGCTACTCCTATCCAAAAAGATGAA 58.951 40.000 0.00 0.00 0.00 2.57
2601 2895 6.201806 CGCTACTCCTATCCAAAAAGATGAAG 59.798 42.308 0.00 0.00 0.00 3.02
2602 2896 6.484977 GCTACTCCTATCCAAAAAGATGAAGG 59.515 42.308 0.00 0.00 0.00 3.46
2603 2897 5.760131 ACTCCTATCCAAAAAGATGAAGGG 58.240 41.667 0.00 0.00 0.00 3.95
2604 2898 5.129368 TCCTATCCAAAAAGATGAAGGGG 57.871 43.478 0.00 0.00 0.00 4.79
2605 2899 4.544152 TCCTATCCAAAAAGATGAAGGGGT 59.456 41.667 0.00 0.00 0.00 4.95
2606 2900 4.646492 CCTATCCAAAAAGATGAAGGGGTG 59.354 45.833 0.00 0.00 0.00 4.61
2607 2901 2.247358 TCCAAAAAGATGAAGGGGTGC 58.753 47.619 0.00 0.00 0.00 5.01
2608 2902 2.158325 TCCAAAAAGATGAAGGGGTGCT 60.158 45.455 0.00 0.00 0.00 4.40
2609 2903 3.075283 TCCAAAAAGATGAAGGGGTGCTA 59.925 43.478 0.00 0.00 0.00 3.49
2610 2904 3.445096 CCAAAAAGATGAAGGGGTGCTAG 59.555 47.826 0.00 0.00 0.00 3.42
2611 2905 2.426842 AAAGATGAAGGGGTGCTAGC 57.573 50.000 8.10 8.10 0.00 3.42
2612 2906 1.589414 AAGATGAAGGGGTGCTAGCT 58.411 50.000 17.23 0.00 0.00 3.32
2613 2907 0.835941 AGATGAAGGGGTGCTAGCTG 59.164 55.000 17.23 0.00 0.00 4.24
2614 2908 0.179034 GATGAAGGGGTGCTAGCTGG 60.179 60.000 17.23 0.00 0.00 4.85
2615 2909 1.639635 ATGAAGGGGTGCTAGCTGGG 61.640 60.000 17.23 0.00 0.00 4.45
2616 2910 3.705934 GAAGGGGTGCTAGCTGGGC 62.706 68.421 17.23 0.81 0.00 5.36
2619 2913 4.803908 GGGTGCTAGCTGGGCCAC 62.804 72.222 17.23 4.06 0.00 5.01
2620 2914 3.721706 GGTGCTAGCTGGGCCACT 61.722 66.667 17.23 8.06 0.00 4.00
2621 2915 2.367202 GGTGCTAGCTGGGCCACTA 61.367 63.158 17.23 8.85 0.00 2.74
2622 2916 1.153349 GTGCTAGCTGGGCCACTAC 60.153 63.158 17.23 5.65 0.00 2.73
2623 2917 2.367202 TGCTAGCTGGGCCACTACC 61.367 63.158 17.23 1.99 0.00 3.18
2631 2925 4.090723 GGCCACTACCCAAACCAC 57.909 61.111 0.00 0.00 0.00 4.16
2632 2926 1.458927 GGCCACTACCCAAACCACT 59.541 57.895 0.00 0.00 0.00 4.00
2633 2927 0.608308 GGCCACTACCCAAACCACTC 60.608 60.000 0.00 0.00 0.00 3.51
2634 2928 0.109723 GCCACTACCCAAACCACTCA 59.890 55.000 0.00 0.00 0.00 3.41
2635 2929 1.892209 CCACTACCCAAACCACTCAC 58.108 55.000 0.00 0.00 0.00 3.51
2636 2930 1.544759 CCACTACCCAAACCACTCACC 60.545 57.143 0.00 0.00 0.00 4.02
2637 2931 1.420138 CACTACCCAAACCACTCACCT 59.580 52.381 0.00 0.00 0.00 4.00
2638 2932 2.635915 CACTACCCAAACCACTCACCTA 59.364 50.000 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.107051 CTTTTCCCCGCGCTGCTG 62.107 66.667 5.56 0.00 0.00 4.41
44 45 2.671619 TTCCTTTTCCCCGCGCTG 60.672 61.111 5.56 0.00 0.00 5.18
45 46 2.359975 CTTCCTTTTCCCCGCGCT 60.360 61.111 5.56 0.00 0.00 5.92
46 47 1.923227 CTTCTTCCTTTTCCCCGCGC 61.923 60.000 0.00 0.00 0.00 6.86
47 48 0.321298 TCTTCTTCCTTTTCCCCGCG 60.321 55.000 0.00 0.00 0.00 6.46
48 49 1.905637 TTCTTCTTCCTTTTCCCCGC 58.094 50.000 0.00 0.00 0.00 6.13
49 50 5.067805 CCATATTTCTTCTTCCTTTTCCCCG 59.932 44.000 0.00 0.00 0.00 5.73
50 51 5.163405 GCCATATTTCTTCTTCCTTTTCCCC 60.163 44.000 0.00 0.00 0.00 4.81
51 52 5.163405 GGCCATATTTCTTCTTCCTTTTCCC 60.163 44.000 0.00 0.00 0.00 3.97
52 53 5.422012 TGGCCATATTTCTTCTTCCTTTTCC 59.578 40.000 0.00 0.00 0.00 3.13
53 54 6.530019 TGGCCATATTTCTTCTTCCTTTTC 57.470 37.500 0.00 0.00 0.00 2.29
54 55 6.126968 CCATGGCCATATTTCTTCTTCCTTTT 60.127 38.462 20.30 0.00 0.00 2.27
55 56 5.364735 CCATGGCCATATTTCTTCTTCCTTT 59.635 40.000 20.30 0.00 0.00 3.11
56 57 4.897670 CCATGGCCATATTTCTTCTTCCTT 59.102 41.667 20.30 0.00 0.00 3.36
57 58 4.477249 CCATGGCCATATTTCTTCTTCCT 58.523 43.478 20.30 0.00 0.00 3.36
58 59 3.575687 CCCATGGCCATATTTCTTCTTCC 59.424 47.826 20.30 0.00 0.00 3.46
59 60 4.473444 TCCCATGGCCATATTTCTTCTTC 58.527 43.478 20.30 0.00 0.00 2.87
60 61 4.541250 TCCCATGGCCATATTTCTTCTT 57.459 40.909 20.30 0.00 0.00 2.52
61 62 4.541250 TTCCCATGGCCATATTTCTTCT 57.459 40.909 20.30 0.00 0.00 2.85
62 63 4.499696 CGTTTCCCATGGCCATATTTCTTC 60.500 45.833 20.30 5.91 0.00 2.87
63 64 3.384467 CGTTTCCCATGGCCATATTTCTT 59.616 43.478 20.30 0.00 0.00 2.52
64 65 2.958355 CGTTTCCCATGGCCATATTTCT 59.042 45.455 20.30 0.00 0.00 2.52
65 66 2.955660 TCGTTTCCCATGGCCATATTTC 59.044 45.455 20.30 6.35 0.00 2.17
66 67 3.025322 TCGTTTCCCATGGCCATATTT 57.975 42.857 20.30 0.00 0.00 1.40
67 68 2.746279 TCGTTTCCCATGGCCATATT 57.254 45.000 20.30 0.00 0.00 1.28
68 69 2.158475 ACATCGTTTCCCATGGCCATAT 60.158 45.455 20.30 2.24 0.00 1.78
69 70 1.214175 ACATCGTTTCCCATGGCCATA 59.786 47.619 20.30 0.00 0.00 2.74
70 71 0.033208 ACATCGTTTCCCATGGCCAT 60.033 50.000 14.09 14.09 0.00 4.40
71 72 0.964860 CACATCGTTTCCCATGGCCA 60.965 55.000 8.56 8.56 0.00 5.36
72 73 0.965363 ACACATCGTTTCCCATGGCC 60.965 55.000 6.09 0.00 0.00 5.36
73 74 0.451783 GACACATCGTTTCCCATGGC 59.548 55.000 6.09 0.00 0.00 4.40
74 75 1.739466 CAGACACATCGTTTCCCATGG 59.261 52.381 4.14 4.14 0.00 3.66
75 76 1.739466 CCAGACACATCGTTTCCCATG 59.261 52.381 0.00 0.00 0.00 3.66
76 77 1.628340 TCCAGACACATCGTTTCCCAT 59.372 47.619 0.00 0.00 0.00 4.00
77 78 1.001974 CTCCAGACACATCGTTTCCCA 59.998 52.381 0.00 0.00 0.00 4.37
78 79 1.726853 CTCCAGACACATCGTTTCCC 58.273 55.000 0.00 0.00 0.00 3.97
79 80 1.079503 GCTCCAGACACATCGTTTCC 58.920 55.000 0.00 0.00 0.00 3.13
80 81 2.086054 AGCTCCAGACACATCGTTTC 57.914 50.000 0.00 0.00 0.00 2.78
81 82 3.258372 TCTTAGCTCCAGACACATCGTTT 59.742 43.478 0.00 0.00 0.00 3.60
82 83 2.826128 TCTTAGCTCCAGACACATCGTT 59.174 45.455 0.00 0.00 0.00 3.85
83 84 2.425312 CTCTTAGCTCCAGACACATCGT 59.575 50.000 0.00 0.00 0.00 3.73
84 85 2.685388 TCTCTTAGCTCCAGACACATCG 59.315 50.000 0.00 0.00 0.00 3.84
85 86 4.340666 TCATCTCTTAGCTCCAGACACATC 59.659 45.833 0.00 0.00 0.00 3.06
86 87 4.285020 TCATCTCTTAGCTCCAGACACAT 58.715 43.478 0.00 0.00 0.00 3.21
87 88 3.701664 TCATCTCTTAGCTCCAGACACA 58.298 45.455 0.00 0.00 0.00 3.72
88 89 4.441356 CCTTCATCTCTTAGCTCCAGACAC 60.441 50.000 0.00 0.00 0.00 3.67
89 90 3.703556 CCTTCATCTCTTAGCTCCAGACA 59.296 47.826 0.00 0.00 0.00 3.41
90 91 3.492482 GCCTTCATCTCTTAGCTCCAGAC 60.492 52.174 0.00 0.00 0.00 3.51
91 92 2.697751 GCCTTCATCTCTTAGCTCCAGA 59.302 50.000 0.00 0.00 0.00 3.86
92 93 2.433604 TGCCTTCATCTCTTAGCTCCAG 59.566 50.000 0.00 0.00 0.00 3.86
93 94 2.433604 CTGCCTTCATCTCTTAGCTCCA 59.566 50.000 0.00 0.00 0.00 3.86
94 95 2.806382 GCTGCCTTCATCTCTTAGCTCC 60.806 54.545 0.00 0.00 0.00 4.70
95 96 2.158986 TGCTGCCTTCATCTCTTAGCTC 60.159 50.000 0.00 0.00 0.00 4.09
96 97 1.836166 TGCTGCCTTCATCTCTTAGCT 59.164 47.619 0.00 0.00 0.00 3.32
97 98 2.211806 CTGCTGCCTTCATCTCTTAGC 58.788 52.381 0.00 0.00 0.00 3.09
98 99 3.540314 ACTGCTGCCTTCATCTCTTAG 57.460 47.619 0.00 0.00 0.00 2.18
99 100 3.988976 AACTGCTGCCTTCATCTCTTA 57.011 42.857 0.00 0.00 0.00 2.10
100 101 2.875094 AACTGCTGCCTTCATCTCTT 57.125 45.000 0.00 0.00 0.00 2.85
101 102 2.170187 CCTAACTGCTGCCTTCATCTCT 59.830 50.000 0.00 0.00 0.00 3.10
102 103 2.559440 CCTAACTGCTGCCTTCATCTC 58.441 52.381 0.00 0.00 0.00 2.75
103 104 1.211457 CCCTAACTGCTGCCTTCATCT 59.789 52.381 0.00 0.00 0.00 2.90
104 105 1.210478 TCCCTAACTGCTGCCTTCATC 59.790 52.381 0.00 0.00 0.00 2.92
105 106 1.289160 TCCCTAACTGCTGCCTTCAT 58.711 50.000 0.00 0.00 0.00 2.57
106 107 1.064003 TTCCCTAACTGCTGCCTTCA 58.936 50.000 0.00 0.00 0.00 3.02
107 108 2.200373 TTTCCCTAACTGCTGCCTTC 57.800 50.000 0.00 0.00 0.00 3.46
108 109 2.108250 TCTTTTCCCTAACTGCTGCCTT 59.892 45.455 0.00 0.00 0.00 4.35
109 110 1.705186 TCTTTTCCCTAACTGCTGCCT 59.295 47.619 0.00 0.00 0.00 4.75
110 111 2.200373 TCTTTTCCCTAACTGCTGCC 57.800 50.000 0.00 0.00 0.00 4.85
111 112 4.336713 CCTTATCTTTTCCCTAACTGCTGC 59.663 45.833 0.00 0.00 0.00 5.25
112 113 4.884164 CCCTTATCTTTTCCCTAACTGCTG 59.116 45.833 0.00 0.00 0.00 4.41
113 114 4.788617 TCCCTTATCTTTTCCCTAACTGCT 59.211 41.667 0.00 0.00 0.00 4.24
114 115 5.112129 TCCCTTATCTTTTCCCTAACTGC 57.888 43.478 0.00 0.00 0.00 4.40
115 116 5.428783 TCCTCCCTTATCTTTTCCCTAACTG 59.571 44.000 0.00 0.00 0.00 3.16
116 117 5.610791 TCCTCCCTTATCTTTTCCCTAACT 58.389 41.667 0.00 0.00 0.00 2.24
117 118 5.163184 CCTCCTCCCTTATCTTTTCCCTAAC 60.163 48.000 0.00 0.00 0.00 2.34
118 119 4.975794 CCTCCTCCCTTATCTTTTCCCTAA 59.024 45.833 0.00 0.00 0.00 2.69
119 120 4.567857 CCTCCTCCCTTATCTTTTCCCTA 58.432 47.826 0.00 0.00 0.00 3.53
120 121 3.398490 CCTCCTCCCTTATCTTTTCCCT 58.602 50.000 0.00 0.00 0.00 4.20
121 122 2.443632 CCCTCCTCCCTTATCTTTTCCC 59.556 54.545 0.00 0.00 0.00 3.97
122 123 2.443632 CCCCTCCTCCCTTATCTTTTCC 59.556 54.545 0.00 0.00 0.00 3.13
123 124 3.117851 CACCCCTCCTCCCTTATCTTTTC 60.118 52.174 0.00 0.00 0.00 2.29
124 125 2.853077 CACCCCTCCTCCCTTATCTTTT 59.147 50.000 0.00 0.00 0.00 2.27
125 126 2.493091 CACCCCTCCTCCCTTATCTTT 58.507 52.381 0.00 0.00 0.00 2.52
126 127 1.345526 CCACCCCTCCTCCCTTATCTT 60.346 57.143 0.00 0.00 0.00 2.40
127 128 0.269173 CCACCCCTCCTCCCTTATCT 59.731 60.000 0.00 0.00 0.00 1.98
128 129 0.029989 ACCACCCCTCCTCCCTTATC 60.030 60.000 0.00 0.00 0.00 1.75
129 130 0.029989 GACCACCCCTCCTCCCTTAT 60.030 60.000 0.00 0.00 0.00 1.73
130 131 1.394963 GACCACCCCTCCTCCCTTA 59.605 63.158 0.00 0.00 0.00 2.69
131 132 2.125225 GACCACCCCTCCTCCCTT 59.875 66.667 0.00 0.00 0.00 3.95
132 133 4.026357 GGACCACCCCTCCTCCCT 62.026 72.222 0.00 0.00 0.00 4.20
133 134 4.348495 TGGACCACCCCTCCTCCC 62.348 72.222 0.00 0.00 34.81 4.30
134 135 3.009714 GTGGACCACCCCTCCTCC 61.010 72.222 14.16 0.00 34.81 4.30
135 136 3.391382 CGTGGACCACCCCTCCTC 61.391 72.222 19.11 0.00 34.81 3.71
136 137 4.250170 ACGTGGACCACCCCTCCT 62.250 66.667 19.11 0.00 34.81 3.69
137 138 4.016706 CACGTGGACCACCCCTCC 62.017 72.222 19.11 0.00 34.81 4.30
138 139 4.016706 CCACGTGGACCACCCCTC 62.017 72.222 31.31 0.00 37.39 4.30
148 149 2.773007 TATTGTTGGGCCCCACGTGG 62.773 60.000 28.26 28.26 30.78 4.94
149 150 0.896019 TTATTGTTGGGCCCCACGTG 60.896 55.000 22.27 9.08 30.78 4.49
150 151 0.178958 TTTATTGTTGGGCCCCACGT 60.179 50.000 22.27 13.97 30.78 4.49
151 152 0.245266 GTTTATTGTTGGGCCCCACG 59.755 55.000 22.27 0.00 30.78 4.94
152 153 1.275010 CTGTTTATTGTTGGGCCCCAC 59.725 52.381 22.27 20.63 30.78 4.61
153 154 1.638529 CTGTTTATTGTTGGGCCCCA 58.361 50.000 22.27 4.90 0.00 4.96
154 155 0.901827 CCTGTTTATTGTTGGGCCCC 59.098 55.000 22.27 4.91 0.00 5.80
155 156 1.824852 CTCCTGTTTATTGTTGGGCCC 59.175 52.381 17.59 17.59 0.00 5.80
156 157 2.492088 GACTCCTGTTTATTGTTGGGCC 59.508 50.000 0.00 0.00 0.00 5.80
157 158 3.421844 AGACTCCTGTTTATTGTTGGGC 58.578 45.455 0.00 0.00 0.00 5.36
158 159 3.684788 CGAGACTCCTGTTTATTGTTGGG 59.315 47.826 0.00 0.00 0.00 4.12
159 160 3.125316 GCGAGACTCCTGTTTATTGTTGG 59.875 47.826 0.00 0.00 0.00 3.77
160 161 3.181530 CGCGAGACTCCTGTTTATTGTTG 60.182 47.826 0.00 0.00 0.00 3.33
161 162 2.993899 CGCGAGACTCCTGTTTATTGTT 59.006 45.455 0.00 0.00 0.00 2.83
162 163 2.607187 CGCGAGACTCCTGTTTATTGT 58.393 47.619 0.00 0.00 0.00 2.71
163 164 1.324736 GCGCGAGACTCCTGTTTATTG 59.675 52.381 12.10 0.00 0.00 1.90
164 165 1.641577 GCGCGAGACTCCTGTTTATT 58.358 50.000 12.10 0.00 0.00 1.40
165 166 0.525668 CGCGCGAGACTCCTGTTTAT 60.526 55.000 28.94 0.00 0.00 1.40
166 167 1.154093 CGCGCGAGACTCCTGTTTA 60.154 57.895 28.94 0.00 0.00 2.01
167 168 2.430921 CGCGCGAGACTCCTGTTT 60.431 61.111 28.94 0.00 0.00 2.83
168 169 4.421479 CCGCGCGAGACTCCTGTT 62.421 66.667 34.63 0.00 0.00 3.16
189 190 3.869272 CATGCTCGCCCAAGACGC 61.869 66.667 0.00 0.00 0.00 5.19
190 191 3.197790 CCATGCTCGCCCAAGACG 61.198 66.667 0.00 0.00 0.00 4.18
191 192 2.825836 CCCATGCTCGCCCAAGAC 60.826 66.667 0.00 0.00 0.00 3.01
192 193 4.113815 CCCCATGCTCGCCCAAGA 62.114 66.667 0.00 0.00 0.00 3.02
248 249 4.572571 AACGTTTCAGGCCGGGCA 62.573 61.111 31.59 7.51 0.00 5.36
249 250 3.263503 GAAACGTTTCAGGCCGGGC 62.264 63.158 30.99 22.67 37.15 6.13
250 251 2.622962 GGAAACGTTTCAGGCCGGG 61.623 63.158 34.79 0.00 38.92 5.73
251 252 2.622962 GGGAAACGTTTCAGGCCGG 61.623 63.158 34.79 0.00 38.92 6.13
252 253 1.448922 TTGGGAAACGTTTCAGGCCG 61.449 55.000 34.79 0.00 38.92 6.13
253 254 0.747852 TTTGGGAAACGTTTCAGGCC 59.252 50.000 34.79 27.64 38.92 5.19
254 255 2.588027 TTTTGGGAAACGTTTCAGGC 57.412 45.000 34.79 21.21 38.92 4.85
255 256 4.677832 CGTTATTTTGGGAAACGTTTCAGG 59.322 41.667 34.79 17.64 40.69 3.86
256 257 4.677832 CCGTTATTTTGGGAAACGTTTCAG 59.322 41.667 34.79 15.69 43.27 3.02
257 258 4.608951 CCGTTATTTTGGGAAACGTTTCA 58.391 39.130 34.79 18.73 43.27 2.69
268 269 4.920927 GTCATCAACAACCCGTTATTTTGG 59.079 41.667 0.00 0.00 35.52 3.28
269 270 5.768317 AGTCATCAACAACCCGTTATTTTG 58.232 37.500 0.00 0.00 35.52 2.44
270 271 5.334569 CGAGTCATCAACAACCCGTTATTTT 60.335 40.000 0.00 0.00 35.52 1.82
271 272 4.153475 CGAGTCATCAACAACCCGTTATTT 59.847 41.667 0.00 0.00 35.52 1.40
272 273 3.682858 CGAGTCATCAACAACCCGTTATT 59.317 43.478 0.00 0.00 35.52 1.40
273 274 3.259064 CGAGTCATCAACAACCCGTTAT 58.741 45.455 0.00 0.00 35.52 1.89
274 275 2.679450 CGAGTCATCAACAACCCGTTA 58.321 47.619 0.00 0.00 35.52 3.18
275 276 1.508632 CGAGTCATCAACAACCCGTT 58.491 50.000 0.00 0.00 38.83 4.44
276 277 0.949105 GCGAGTCATCAACAACCCGT 60.949 55.000 0.00 0.00 0.00 5.28
277 278 0.948623 TGCGAGTCATCAACAACCCG 60.949 55.000 0.00 0.00 0.00 5.28
278 279 1.234821 TTGCGAGTCATCAACAACCC 58.765 50.000 0.00 0.00 0.00 4.11
279 280 3.559238 ATTTGCGAGTCATCAACAACC 57.441 42.857 0.00 0.00 0.00 3.77
280 281 7.325821 TGAAATTATTTGCGAGTCATCAACAAC 59.674 33.333 0.00 0.00 0.00 3.32
281 282 7.366513 TGAAATTATTTGCGAGTCATCAACAA 58.633 30.769 0.00 0.00 0.00 2.83
282 283 6.907741 TGAAATTATTTGCGAGTCATCAACA 58.092 32.000 0.00 0.00 0.00 3.33
283 284 7.975866 ATGAAATTATTTGCGAGTCATCAAC 57.024 32.000 0.00 0.00 0.00 3.18
284 285 7.429051 CGAATGAAATTATTTGCGAGTCATCAA 59.571 33.333 0.00 0.00 36.07 2.57
285 286 6.906678 CGAATGAAATTATTTGCGAGTCATCA 59.093 34.615 0.00 0.00 36.07 3.07
286 287 6.129613 GCGAATGAAATTATTTGCGAGTCATC 60.130 38.462 0.00 0.00 36.07 2.92
287 288 5.682862 GCGAATGAAATTATTTGCGAGTCAT 59.317 36.000 0.00 0.00 36.07 3.06
288 289 5.027737 GCGAATGAAATTATTTGCGAGTCA 58.972 37.500 0.00 0.00 36.07 3.41
289 290 5.027737 TGCGAATGAAATTATTTGCGAGTC 58.972 37.500 8.13 0.00 46.04 3.36
290 291 4.980590 TGCGAATGAAATTATTTGCGAGT 58.019 34.783 8.13 0.00 46.04 4.18
291 292 5.930310 TTGCGAATGAAATTATTTGCGAG 57.070 34.783 8.13 0.00 46.04 5.03
292 293 6.696825 TTTTGCGAATGAAATTATTTGCGA 57.303 29.167 8.13 4.50 46.04 5.10
316 317 8.791327 AAACATTTTTGTGAGTCATCCTTTTT 57.209 26.923 0.00 0.00 0.00 1.94
317 318 7.495606 GGAAACATTTTTGTGAGTCATCCTTTT 59.504 33.333 0.00 0.00 0.00 2.27
318 319 6.986231 GGAAACATTTTTGTGAGTCATCCTTT 59.014 34.615 0.00 0.00 0.00 3.11
319 320 6.098124 TGGAAACATTTTTGTGAGTCATCCTT 59.902 34.615 0.00 0.00 33.40 3.36
320 321 5.598005 TGGAAACATTTTTGTGAGTCATCCT 59.402 36.000 0.00 0.00 33.40 3.24
321 322 5.841810 TGGAAACATTTTTGTGAGTCATCC 58.158 37.500 0.00 0.00 33.40 3.51
360 361 3.119065 TGTTAGTCTCACCACACGTCAAA 60.119 43.478 0.00 0.00 0.00 2.69
363 364 2.607282 CCTGTTAGTCTCACCACACGTC 60.607 54.545 0.00 0.00 0.00 4.34
366 367 4.803098 ATACCTGTTAGTCTCACCACAC 57.197 45.455 0.00 0.00 0.00 3.82
460 502 3.384789 TGACAAGGACAGCTCGCTTATAT 59.615 43.478 0.00 0.00 0.00 0.86
479 521 2.410053 GTCGACTGAGTGAGCAAATGAC 59.590 50.000 8.70 0.00 0.00 3.06
554 619 2.673523 CTGTTGGAGGCCCAGAGG 59.326 66.667 0.00 0.00 44.60 3.69
575 658 3.480470 ACATCTTGGCATATCTTTCGGG 58.520 45.455 0.00 0.00 0.00 5.14
636 719 0.582005 GTTGAGGCGACACTTCACAC 59.418 55.000 0.00 0.00 0.00 3.82
699 782 2.027285 TGCAAGGACAAGCATACTAGCA 60.027 45.455 0.00 0.00 35.51 3.49
765 850 1.325943 GCGCTCAGTGACATTAGCTTC 59.674 52.381 0.00 0.00 32.73 3.86
840 925 6.872547 CGGCGGAGTATATATATAGCTGAGTA 59.127 42.308 12.18 0.00 32.00 2.59
856 941 0.458669 GATGAGGAAACGGCGGAGTA 59.541 55.000 13.24 0.00 0.00 2.59
857 942 1.218316 GATGAGGAAACGGCGGAGT 59.782 57.895 13.24 0.00 0.00 3.85
898 983 2.559668 GAGAGAGATGGATGCTGGAGAG 59.440 54.545 0.00 0.00 0.00 3.20
960 1058 4.767255 GAGCCTGCCGACTGTGGG 62.767 72.222 4.26 4.26 0.00 4.61
1191 1289 2.281484 GTGAAGGTGCCGAGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
1335 1442 1.978454 CATCCTTGATCTCCTTGGCC 58.022 55.000 0.00 0.00 0.00 5.36
1575 1694 0.678048 GCTCAAAGTCTTCCCGCCAT 60.678 55.000 0.00 0.00 0.00 4.40
1588 1707 2.357034 GACGCCACCGAGCTCAAA 60.357 61.111 15.40 0.00 38.29 2.69
1639 1758 7.699391 AGAAACCGTCTAAAAACTTTTAACTGC 59.301 33.333 0.00 0.00 33.56 4.40
1640 1759 9.218359 GAGAAACCGTCTAAAAACTTTTAACTG 57.782 33.333 0.00 0.00 36.41 3.16
1648 1773 4.704965 AGCAGAGAAACCGTCTAAAAACT 58.295 39.130 0.00 0.00 36.41 2.66
1653 1778 3.321111 ACAGAAGCAGAGAAACCGTCTAA 59.679 43.478 0.00 0.00 36.41 2.10
1658 1785 1.801178 GGAACAGAAGCAGAGAAACCG 59.199 52.381 0.00 0.00 0.00 4.44
1668 1795 3.131046 CCCATATTTGGTGGAACAGAAGC 59.869 47.826 1.26 0.00 41.80 3.86
1970 2258 9.908152 GTAAGTTCCTTAATGTGCAAGTATTTT 57.092 29.630 0.00 0.00 0.00 1.82
1979 2267 2.222953 CGCCGTAAGTTCCTTAATGTGC 60.223 50.000 0.00 0.00 0.00 4.57
2015 2303 1.352017 ACAAGCAGTCCATGTCCATCA 59.648 47.619 0.00 0.00 0.00 3.07
2297 2591 6.352222 GGAATCCTCTTACAATCAGTCCAAGA 60.352 42.308 0.00 0.00 0.00 3.02
2307 2601 5.441718 TGCTCTTGGAATCCTCTTACAAT 57.558 39.130 0.00 0.00 0.00 2.71
2412 2706 9.237187 CCATCTCTCTAACTACATGAGCTAATA 57.763 37.037 0.00 0.00 0.00 0.98
2445 2739 5.941647 CGGGGTCATCCTACTTTTCTAAAAA 59.058 40.000 0.00 0.00 35.33 1.94
2446 2740 5.493809 CGGGGTCATCCTACTTTTCTAAAA 58.506 41.667 0.00 0.00 35.33 1.52
2447 2741 4.080751 CCGGGGTCATCCTACTTTTCTAAA 60.081 45.833 0.00 0.00 35.33 1.85
2448 2742 3.453353 CCGGGGTCATCCTACTTTTCTAA 59.547 47.826 0.00 0.00 35.33 2.10
2449 2743 3.036091 CCGGGGTCATCCTACTTTTCTA 58.964 50.000 0.00 0.00 35.33 2.10
2450 2744 1.838077 CCGGGGTCATCCTACTTTTCT 59.162 52.381 0.00 0.00 35.33 2.52
2451 2745 1.746171 GCCGGGGTCATCCTACTTTTC 60.746 57.143 2.18 0.00 35.33 2.29
2452 2746 0.255033 GCCGGGGTCATCCTACTTTT 59.745 55.000 2.18 0.00 35.33 2.27
2453 2747 1.632965 GGCCGGGGTCATCCTACTTT 61.633 60.000 2.18 0.00 35.33 2.66
2454 2748 2.070650 GGCCGGGGTCATCCTACTT 61.071 63.158 2.18 0.00 35.33 2.24
2455 2749 2.446036 GGCCGGGGTCATCCTACT 60.446 66.667 2.18 0.00 35.33 2.57
2456 2750 2.446036 AGGCCGGGGTCATCCTAC 60.446 66.667 2.18 0.00 35.33 3.18
2457 2751 2.122989 GAGGCCGGGGTCATCCTA 60.123 66.667 2.18 0.00 35.33 2.94
2458 2752 4.095400 AGAGGCCGGGGTCATCCT 62.095 66.667 2.18 0.00 35.33 3.24
2459 2753 3.866582 CAGAGGCCGGGGTCATCC 61.867 72.222 2.18 0.00 0.00 3.51
2460 2754 4.554036 GCAGAGGCCGGGGTCATC 62.554 72.222 2.18 0.00 0.00 2.92
2463 2757 4.554036 GATGCAGAGGCCGGGGTC 62.554 72.222 2.18 0.00 40.13 4.46
2465 2759 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2466 2760 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
2467 2761 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
2468 2762 3.457625 CTCCCAGATGCAGAGGCCG 62.458 68.421 0.00 0.00 40.13 6.13
2469 2763 1.417288 ATCTCCCAGATGCAGAGGCC 61.417 60.000 0.00 0.00 40.13 5.19
2470 2764 0.250381 CATCTCCCAGATGCAGAGGC 60.250 60.000 0.61 0.00 44.69 4.70
2478 2772 0.322975 GCCGTATGCATCTCCCAGAT 59.677 55.000 0.19 0.00 40.77 2.90
2479 2773 1.748403 GCCGTATGCATCTCCCAGA 59.252 57.895 0.19 0.00 40.77 3.86
2480 2774 1.302033 GGCCGTATGCATCTCCCAG 60.302 63.158 0.19 0.00 43.89 4.45
2481 2775 2.069430 TGGCCGTATGCATCTCCCA 61.069 57.895 0.19 3.16 43.89 4.37
2482 2776 1.598130 GTGGCCGTATGCATCTCCC 60.598 63.158 0.19 0.17 43.89 4.30
2483 2777 0.179045 AAGTGGCCGTATGCATCTCC 60.179 55.000 0.19 0.71 43.89 3.71
2484 2778 1.668419 AAAGTGGCCGTATGCATCTC 58.332 50.000 0.19 0.00 43.89 2.75
2485 2779 3.492102 ATAAAGTGGCCGTATGCATCT 57.508 42.857 0.19 0.00 43.89 2.90
2486 2780 3.563808 TCAATAAAGTGGCCGTATGCATC 59.436 43.478 0.19 0.00 43.89 3.91
2487 2781 3.550820 TCAATAAAGTGGCCGTATGCAT 58.449 40.909 3.79 3.79 43.89 3.96
2488 2782 2.992593 TCAATAAAGTGGCCGTATGCA 58.007 42.857 0.00 0.00 43.89 3.96
2489 2783 4.568152 AATCAATAAAGTGGCCGTATGC 57.432 40.909 0.00 0.00 40.16 3.14
2490 2784 9.528018 AAAAATAATCAATAAAGTGGCCGTATG 57.472 29.630 0.00 0.00 0.00 2.39
2491 2785 9.528018 CAAAAATAATCAATAAAGTGGCCGTAT 57.472 29.630 0.00 0.00 0.00 3.06
2492 2786 8.740906 TCAAAAATAATCAATAAAGTGGCCGTA 58.259 29.630 0.00 0.00 0.00 4.02
2493 2787 7.607250 TCAAAAATAATCAATAAAGTGGCCGT 58.393 30.769 0.00 0.00 0.00 5.68
2494 2788 7.222611 CCTCAAAAATAATCAATAAAGTGGCCG 59.777 37.037 0.00 0.00 0.00 6.13
2495 2789 8.257306 TCCTCAAAAATAATCAATAAAGTGGCC 58.743 33.333 0.00 0.00 0.00 5.36
2496 2790 9.087424 GTCCTCAAAAATAATCAATAAAGTGGC 57.913 33.333 0.00 0.00 0.00 5.01
2497 2791 9.586435 GGTCCTCAAAAATAATCAATAAAGTGG 57.414 33.333 0.00 0.00 0.00 4.00
2506 2800 9.362151 ACTTTGTAAGGTCCTCAAAAATAATCA 57.638 29.630 7.07 0.00 32.06 2.57
2512 2806 9.629878 TGTAATACTTTGTAAGGTCCTCAAAAA 57.370 29.630 7.07 0.00 32.06 1.94
2513 2807 9.629878 TTGTAATACTTTGTAAGGTCCTCAAAA 57.370 29.630 7.07 1.69 32.06 2.44
2514 2808 9.059260 GTTGTAATACTTTGTAAGGTCCTCAAA 57.941 33.333 5.80 5.80 0.00 2.69
2515 2809 8.212312 TGTTGTAATACTTTGTAAGGTCCTCAA 58.788 33.333 0.00 0.00 0.00 3.02
2516 2810 7.737869 TGTTGTAATACTTTGTAAGGTCCTCA 58.262 34.615 0.00 0.00 0.00 3.86
2517 2811 8.611654 TTGTTGTAATACTTTGTAAGGTCCTC 57.388 34.615 0.00 0.00 0.00 3.71
2518 2812 9.010029 CATTGTTGTAATACTTTGTAAGGTCCT 57.990 33.333 0.00 0.00 0.00 3.85
2519 2813 8.789762 ACATTGTTGTAATACTTTGTAAGGTCC 58.210 33.333 0.00 0.00 33.16 4.46
2520 2814 9.607285 CACATTGTTGTAATACTTTGTAAGGTC 57.393 33.333 0.00 0.00 33.76 3.85
2521 2815 8.079809 GCACATTGTTGTAATACTTTGTAAGGT 58.920 33.333 0.00 0.00 33.76 3.50
2522 2816 7.540745 GGCACATTGTTGTAATACTTTGTAAGG 59.459 37.037 0.00 0.00 33.76 2.69
2523 2817 8.296713 AGGCACATTGTTGTAATACTTTGTAAG 58.703 33.333 0.00 0.00 33.76 2.34
2524 2818 8.172352 AGGCACATTGTTGTAATACTTTGTAA 57.828 30.769 0.00 0.00 33.76 2.41
2525 2819 7.753309 AGGCACATTGTTGTAATACTTTGTA 57.247 32.000 0.00 0.00 33.76 2.41
2526 2820 6.648879 AGGCACATTGTTGTAATACTTTGT 57.351 33.333 0.00 0.00 33.76 2.83
2527 2821 9.638239 ATTTAGGCACATTGTTGTAATACTTTG 57.362 29.630 0.00 0.00 33.76 2.77
2528 2822 9.855021 GATTTAGGCACATTGTTGTAATACTTT 57.145 29.630 0.00 0.00 33.76 2.66
2529 2823 8.466798 GGATTTAGGCACATTGTTGTAATACTT 58.533 33.333 0.00 0.00 33.76 2.24
2530 2824 7.613801 TGGATTTAGGCACATTGTTGTAATACT 59.386 33.333 0.00 0.00 33.76 2.12
2531 2825 7.700656 GTGGATTTAGGCACATTGTTGTAATAC 59.299 37.037 0.00 0.00 33.76 1.89
2532 2826 7.147983 GGTGGATTTAGGCACATTGTTGTAATA 60.148 37.037 0.00 0.00 33.76 0.98
2533 2827 6.350949 GGTGGATTTAGGCACATTGTTGTAAT 60.351 38.462 0.00 0.00 33.76 1.89
2534 2828 5.047660 GGTGGATTTAGGCACATTGTTGTAA 60.048 40.000 0.00 0.00 33.76 2.41
2535 2829 4.461081 GGTGGATTTAGGCACATTGTTGTA 59.539 41.667 0.00 0.00 33.76 2.41
2536 2830 3.258123 GGTGGATTTAGGCACATTGTTGT 59.742 43.478 0.00 0.00 36.15 3.32
2537 2831 3.257873 TGGTGGATTTAGGCACATTGTTG 59.742 43.478 0.00 0.00 0.00 3.33
2538 2832 3.505386 TGGTGGATTTAGGCACATTGTT 58.495 40.909 0.00 0.00 0.00 2.83
2539 2833 3.168035 TGGTGGATTTAGGCACATTGT 57.832 42.857 0.00 0.00 0.00 2.71
2540 2834 3.956199 AGATGGTGGATTTAGGCACATTG 59.044 43.478 0.00 0.00 0.00 2.82
2541 2835 4.255510 AGATGGTGGATTTAGGCACATT 57.744 40.909 0.00 0.00 0.00 2.71
2542 2836 3.956199 CAAGATGGTGGATTTAGGCACAT 59.044 43.478 0.00 0.00 0.00 3.21
2543 2837 3.355378 CAAGATGGTGGATTTAGGCACA 58.645 45.455 0.00 0.00 0.00 4.57
2544 2838 2.689983 CCAAGATGGTGGATTTAGGCAC 59.310 50.000 0.00 0.00 41.65 5.01
2545 2839 2.949963 GCCAAGATGGTGGATTTAGGCA 60.950 50.000 0.00 0.00 41.65 4.75
2546 2840 1.683385 GCCAAGATGGTGGATTTAGGC 59.317 52.381 0.00 0.00 41.65 3.93
2547 2841 3.017048 TGCCAAGATGGTGGATTTAGG 57.983 47.619 0.00 0.00 41.65 2.69
2548 2842 3.763360 TGTTGCCAAGATGGTGGATTTAG 59.237 43.478 0.00 0.00 41.65 1.85
2549 2843 3.509575 GTGTTGCCAAGATGGTGGATTTA 59.490 43.478 0.00 0.00 41.65 1.40
2550 2844 2.299867 GTGTTGCCAAGATGGTGGATTT 59.700 45.455 0.00 0.00 41.65 2.17
2551 2845 1.895131 GTGTTGCCAAGATGGTGGATT 59.105 47.619 0.00 0.00 41.65 3.01
2552 2846 1.203038 TGTGTTGCCAAGATGGTGGAT 60.203 47.619 0.00 0.00 41.65 3.41
2553 2847 0.184692 TGTGTTGCCAAGATGGTGGA 59.815 50.000 0.00 0.00 41.65 4.02
2554 2848 1.067425 CATGTGTTGCCAAGATGGTGG 60.067 52.381 0.00 0.00 40.46 4.61
2555 2849 1.614903 ACATGTGTTGCCAAGATGGTG 59.385 47.619 0.00 0.00 40.46 4.17
2556 2850 1.888512 GACATGTGTTGCCAAGATGGT 59.111 47.619 1.15 0.00 40.46 3.55
2557 2851 1.135603 CGACATGTGTTGCCAAGATGG 60.136 52.381 1.15 0.00 41.55 3.51
2558 2852 2.251869 CGACATGTGTTGCCAAGATG 57.748 50.000 1.15 0.00 0.00 2.90
2566 2860 2.370281 AGGAGTAGCGACATGTGTTG 57.630 50.000 1.15 0.00 0.00 3.33
2567 2861 3.068307 GGATAGGAGTAGCGACATGTGTT 59.932 47.826 1.15 0.00 0.00 3.32
2568 2862 2.623889 GGATAGGAGTAGCGACATGTGT 59.376 50.000 1.15 0.00 0.00 3.72
2569 2863 2.623416 TGGATAGGAGTAGCGACATGTG 59.377 50.000 1.15 0.00 0.00 3.21
2570 2864 2.945456 TGGATAGGAGTAGCGACATGT 58.055 47.619 0.00 0.00 0.00 3.21
2571 2865 4.322080 TTTGGATAGGAGTAGCGACATG 57.678 45.455 0.00 0.00 0.00 3.21
2572 2866 5.128827 TCTTTTTGGATAGGAGTAGCGACAT 59.871 40.000 0.00 0.00 0.00 3.06
2573 2867 4.464951 TCTTTTTGGATAGGAGTAGCGACA 59.535 41.667 0.00 0.00 0.00 4.35
2574 2868 5.007385 TCTTTTTGGATAGGAGTAGCGAC 57.993 43.478 0.00 0.00 0.00 5.19
2575 2869 5.362717 TCATCTTTTTGGATAGGAGTAGCGA 59.637 40.000 0.00 0.00 0.00 4.93
2576 2870 5.601662 TCATCTTTTTGGATAGGAGTAGCG 58.398 41.667 0.00 0.00 0.00 4.26
2577 2871 6.484977 CCTTCATCTTTTTGGATAGGAGTAGC 59.515 42.308 0.00 0.00 0.00 3.58
2578 2872 6.995091 CCCTTCATCTTTTTGGATAGGAGTAG 59.005 42.308 0.00 0.00 0.00 2.57
2579 2873 6.126478 CCCCTTCATCTTTTTGGATAGGAGTA 60.126 42.308 0.00 0.00 0.00 2.59
2580 2874 5.340360 CCCCTTCATCTTTTTGGATAGGAGT 60.340 44.000 0.00 0.00 0.00 3.85
2581 2875 5.136105 CCCCTTCATCTTTTTGGATAGGAG 58.864 45.833 0.00 0.00 0.00 3.69
2582 2876 4.544152 ACCCCTTCATCTTTTTGGATAGGA 59.456 41.667 0.00 0.00 0.00 2.94
2583 2877 4.646492 CACCCCTTCATCTTTTTGGATAGG 59.354 45.833 0.00 0.00 0.00 2.57
2584 2878 4.098501 GCACCCCTTCATCTTTTTGGATAG 59.901 45.833 0.00 0.00 0.00 2.08
2585 2879 4.023291 GCACCCCTTCATCTTTTTGGATA 58.977 43.478 0.00 0.00 0.00 2.59
2586 2880 2.833943 GCACCCCTTCATCTTTTTGGAT 59.166 45.455 0.00 0.00 0.00 3.41
2587 2881 2.158325 AGCACCCCTTCATCTTTTTGGA 60.158 45.455 0.00 0.00 0.00 3.53
2588 2882 2.250924 AGCACCCCTTCATCTTTTTGG 58.749 47.619 0.00 0.00 0.00 3.28
2589 2883 3.119352 GCTAGCACCCCTTCATCTTTTTG 60.119 47.826 10.63 0.00 0.00 2.44
2590 2884 3.092301 GCTAGCACCCCTTCATCTTTTT 58.908 45.455 10.63 0.00 0.00 1.94
2591 2885 2.310052 AGCTAGCACCCCTTCATCTTTT 59.690 45.455 18.83 0.00 0.00 2.27
2592 2886 1.918957 AGCTAGCACCCCTTCATCTTT 59.081 47.619 18.83 0.00 0.00 2.52
2593 2887 1.211457 CAGCTAGCACCCCTTCATCTT 59.789 52.381 18.83 0.00 0.00 2.40
2594 2888 0.835941 CAGCTAGCACCCCTTCATCT 59.164 55.000 18.83 0.00 0.00 2.90
2595 2889 0.179034 CCAGCTAGCACCCCTTCATC 60.179 60.000 18.83 0.00 0.00 2.92
2596 2890 1.639635 CCCAGCTAGCACCCCTTCAT 61.640 60.000 18.83 0.00 0.00 2.57
2597 2891 2.300967 CCCAGCTAGCACCCCTTCA 61.301 63.158 18.83 0.00 0.00 3.02
2598 2892 2.592308 CCCAGCTAGCACCCCTTC 59.408 66.667 18.83 0.00 0.00 3.46
2599 2893 3.732849 GCCCAGCTAGCACCCCTT 61.733 66.667 18.83 0.00 0.00 3.95
2602 2896 4.803908 GTGGCCCAGCTAGCACCC 62.804 72.222 18.83 11.35 0.00 4.61
2603 2897 2.367202 TAGTGGCCCAGCTAGCACC 61.367 63.158 18.83 12.89 0.00 5.01
2604 2898 1.153349 GTAGTGGCCCAGCTAGCAC 60.153 63.158 18.83 4.90 0.00 4.40
2605 2899 2.367202 GGTAGTGGCCCAGCTAGCA 61.367 63.158 18.83 0.00 36.18 3.49
2606 2900 2.506472 GGTAGTGGCCCAGCTAGC 59.494 66.667 6.62 6.62 0.00 3.42
2614 2908 0.608308 GAGTGGTTTGGGTAGTGGCC 60.608 60.000 0.00 0.00 0.00 5.36
2615 2909 0.109723 TGAGTGGTTTGGGTAGTGGC 59.890 55.000 0.00 0.00 0.00 5.01
2616 2910 1.544759 GGTGAGTGGTTTGGGTAGTGG 60.545 57.143 0.00 0.00 0.00 4.00
2617 2911 1.420138 AGGTGAGTGGTTTGGGTAGTG 59.580 52.381 0.00 0.00 0.00 2.74
2618 2912 1.815757 AGGTGAGTGGTTTGGGTAGT 58.184 50.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.