>input_sequence_73236
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---------------------------------------------------------ATGGACGCCGCTGATGCCGCCTC
CCCGTGTGATGGGCACAGGACGGTGTGGTCGGAACCGCCGAAGCGGCCGGCCGGCCGGACCAAGTTCAAGGAGACGCGCC
ACCCGCTGTACCGCGGCGTGCGGCGACGGGGCCCCGCCGGCCGGTGGGTGTGCGAGGTGCGCGTGCTCGGGATGAGGGGC
TCCAGGCTTTGGCTCGGCACCTTCACCACCGCCGAGATGGCAGCGCGCGCGCACGACGCCGCCGTTCTCGCGCTCTCCGG
CCGCGCCGCTTGCCTCAACTTCGCCGACTCCGCCTGGCGGATGCTCCCCGTCCTCGCCGGCCCG---------TTCAGCA
CGGCCAAGGAGATCAAGGATGCCGTCGCC------GTCGCCGTCCTGGCGTTCCAAAGGCAGCACCCGGTCGCGTCCATG
GCACCATTGTCCCCTGCGCGGACAACCGATGACGAGAAGGAAATCGATGGCTTGCCGGCACCGAGCGCCCTGTCCATGTC
CAGCGAGCTGTTGAATGAGCACTGGTTTGGCGGCATGGATGCCGGATCGTGCTACTCGGA------GTTCATGGAGTCGC
CGGACACCAGACCATGGCGGGAAGACTTTGAGCTCGGTGGCGTCGAGACACCGCCATGGAGCTACTTGTTCGACTAA---
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----------------------------------------------------
>chr5A_1_TraesCS5A01G311300
TGGCTCGGCGAAGCACACGGCCGGCAGCGGCAGCCGGTAGGCAGCAGCGCGGGGAAAAGGAAGAAGAAATATGGCCATGG
GAAACGATGTGTCTGGAGCTAAGAGATGAAGGCAGCAGTTAGGGAAAAGATAAGGGAGGAGGGGTGGTCCACGTGGGGCC
CAACAATAAACAGGAGTCTCGCGCGGGGCGCGTCTTGGGCGAGCATGGGGCGCCAGCGTGGCTCGCGACCGGCCGAAGGT
TCGGCCGGTGCCCGGCCTGAAACGTTTCCCAAAATAACGGGTTGTTGATGACTCGCAAATAATTTCATTCGCAAAAAAAA
AGGATGACTCACAAAAATGTTTCCAAAAACAGGCGTAGTCTTTGACGTGTGGTGAGACT--AACAGGTATACCTTCCGTT
GCTTGGTCTAAAAGGCG---------------------------------------AGCCCTGGATCTTTTCCCGATTTC
ATGTCACAAAAATCCTTGCCGATATAAGCGAGCTGTCCTTGTCATTTGCTCACTCAGTCGACAGTGG------GTGAGTG
TGAGTGTGAGGAAGCAGGCGCTGCGCTCTCA-----------------GTTACGTCGCCCTCTGGGCCT-----------
-------CCAACAGGGCCCCGAAAGATATGCCAAGATGTTTATTTTATTCATTAATTTTCGCCACAAAAGATGCTTGGGT
GTGAAGTGTCGCCTCAACTAAGATACTTGTTCGACGGAAGAAAAGAAAAAGATCTAGTGCTTGCT--AGTATGCTTGTCC
TTGCATGTGGTGCAGATTATGTGGCCAGATATTGCTCCACGTAGGCGTTGAAGCTAATGTCACTGAGCGCGTGACCCCAC
CACTCCCCGCGCTAATCCCCTTCCGCGCTACGGCGAGCAACCACTACTCAGCTATATATATACTCCGCCGTTTCCTCATC
CAACCAAGCCTCACCGCTCCTCCTCTCCAGCATCCATCTCTCTCAAATCTCTCAACGCAGCAGCTAAA------------
-CTCGCTGCTTAATTACCCCACAGTCGGCAGGCTCCCGGCGACACTGCGATCGATCGATGGACGCCGCTGATGCCGCCTC
CCCGTGTGATGGGCACAGGACGGTGTGGTCGGAACCGCCGAAGCGGCCGGCCGGCCGGACCAAGTTCAAGGAGACGCGCC
ACCCGCTGTACCGCGGCGTGCGGCGACGGGGCCCCGCCGGCCGGTGGGTGTGCGAGGTGCGCGTGCTCGGGATGAGGGGC
TCCAGGCTTTGGCTCGGCACCTTCACCACCGCCGAGATGGCAGCGCGCGCGCACGACGCCGCCGTTCTCGCGCTCTCCGG
CCGCGCCGCTTGCCTCAACTTCGCCGACTCCGCCTGGCGGATGCTCCCCGTCCTCGCCGGCCCG---------TTCAGCA
CGGCCAAGGAGATCAAGGATGCCGTCGCC------GTCGCCGTCCTGGCGTTCCAAAGGCAGCACCCGGTCGCGTCCATG
GCACCATTGTCCCCTGCGCGGACAACCGATGACGAGAAGGAAATCGATGGCTTGCCGGCACCGAGCGCCCTGTCCATGTC
CAGCGAGCTGTTGAATGAGCACTGGTTTGGCGGCATGGATGCCGGATCGTGCTACTCGGA------GTTCATGGAGTCGC
CGGACACCAGACCATGGCGGGAAGACTTTGAGCTCGGTGGCGTCGAGACACCGCCATGGAGCTACTTGTTCGACTAAGC-
-----AGTTAAAAGTTTTTA--GACGGTTTCTCTGCTTCTGTTCCACCAAATATGGGAGGAAACAGAAGGGAATATTTTC
CCCATATGTCCATATGTGCTCGTTCATTGTGAAAGCCTCCGCTGTCTATTTT-TGGGGAGGGCGCATTTGTACTTGAGTT
ATTTTTTCGGACAATCACTTTGAGTGTTTTTTTGTTGTTGAGTTGAATCACTTGAGTGTTCTAGTGAATACAGAATGAGT
ACTTCTCAATTATTATGGACCTCAAGCACTCCATGATCGGCATAAGATATC-----------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATAATTTCTGTCAATAGAAACCAGAAAAG
ACACTTCAAAAACAGGAAAAATACTTGCACATTAAGGAACTTACGGCGTCACAGCTTGACAATGATGGACATGGACTGCT
TGTAAGAGAATTCCAAGAGCAGGTACTATTCGTTCAGATGAGGTTACCAGAAATATCCCAAAGTCAGGGGTATAACCGTA
TAGTAGCGAGCACTTGAGTGTTCTAGTGAATAAAGAATGTGTACCTGCGCAATTATTATGGACATAAGATATTATATTTT
ATGTCAATAGAAACAAGAAAAGGCACTT-AAA----AATAAGAATTGCATTATGAGAAAAGAAAGAAGAAAA-GACACAT
TGAAAATTTGTCACAGCTTGACAAAGATGGTCTTGGACTGATTGTAAGAGGATTCCAAGAGCATGCAGATACTATTCGTT
CAGGTGGGATGACCAGAAATATCTTAAGATCAGGGGTATGCATGTAACAACTATATATAAACTGCTATTAGCTCATGTAG
TTAGAGAGATGGAACTTTTTTTTAGAAAAGTAGGATGACCCCGGCCTCTGCATCTGGGAGATGCATACGGCCACTTTATT
GATTATTTTTGAGGACCTTACAAAGTATTACAACAATGTGCCTAAATCCACCATCTTGGCAACACATGTCGCTACTCCTA
TCCAAAAAGATGAAGGGGTGCTAGCTGGGCCACTACCCAAACCACTCACCTA
>chr5D_323
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--GATGACTCGCAAAAATGTTTCCAAAAACAGGCGTAGTCGTTCACATGTGGTGAGACTATAACGGGTATACCTTCCGTT
GCTTGGTCTAAAAGGCGGTGGTCAAGTACGCTAATCCAGAAGCTTTGAACTATCGTAGCCCTGGATCTTTTCCCGATTTC
ATGTCACAAAAATCCTTGCCGCTATAAGCGTGCTGTCCTTTTCATTTGGTCACTCAGTCGACAGTGGGTGAGTGTGAGTG
TGAGTGTGAGGAAGCAGGCGCTGCGCTCTCAACGCGCCTCGTGGCACAGTTACGTCGCGCTCTGGGCCT-----------
-------CCAACAGGGCTCCGAAAGTTATGCCAAGATGCTTATTTTATTCATTAATTTTCGCCACAAAAGATGCTTGGAT
GTGAAGTGTCGACTCAACTAAGATACTTGTTCGACGGAAGAAAAGAAAAAGATCTAGTGCTA-CT--AGTATGCTTGTCC
TTGCATGTGGCGCAGATTATGTGGCCAGATGTTGCTCCACGTAGGCGTTCAAGCTAATGTCACTCAGCGCGTGACCCCAC
CACTCCCCGCGCTAATCCCCTTCCGCGCTACGGCGAGCAACCACCACTCAGCTATATATA--CTCCGCCGTTTCCTCATC
CAACCAAGCCTCACCGCCCCTC-TCTCCAGCATCCATCTCTCTCAAATCTCTCAACGCAGCAGCTAAA------------
-CTCGCTGCTTAATTACTCCACAGTCGACAGGCTCCCGGCGACACTGCGATCGATCGATGGACGCCGTCGACGCCGCCTC
CCCGTGTGATGGGCACAGGACGGTGTGGTCGGAGCCGCCGAAGCGGCCGGCCGGCCGGACCAAGTTCAAGGAGACGCGCC
ACCCGCTGTACCGCGGCGTGCGGCGACGGGGCCCCGCCGGCCGGTGGGTGTGCGAGGTGCGCGTGCTCGGGATGAGGGGC
TCCAGGCTCTGGCTCGGCACCTTCACCACCGCCGAGATGGCAGCGCGCGCGCACGACGCCGCCGTTCTCGCGCTCTCCGG
CCGCGCCGCTTGTCTCAACTTCGCCGACTCCGCCTGGCGGATGCTCCCCGTCCTCGCCGGCCCG---------TTCAGCA
CCGCCAAGGAGATCAAGGACGCCGTCGCC------GTCGCCGTCCTGGCGTTCCAAAGGCAGCACCCGGTCGCGTCCATG
GCACCATTGTCCCCTGCGCGGACAACCGATGACGAGAAGGAAATCGATGGCTCGCCGGCGCCGAGCGCCCTGTTCATGTC
CAGCGAGCTGTTGAATGAGCACTGGTTTGTCGGCATCGATGCCGGATCGTGCTACTCGGAGGGCCTGTTCATGGAGTCGC
CGGACACCAGACCGTGGCGGGAAGACCTCGAGCTCGGTGGCGTCGAGACACCGCCATGGAGCTACTTGTTCGACTAAAGT
AGTTAAAAGTTTG-------TAGATGGTTTCTCT-CTTCTGTTCCACCAAATACGGGAGGAAACAGATGGGGATATTTT-
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>chr5B_416
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--------------------------------------------------------AGCCCTGGATCTTTTCCCGATTTC
ATGTCACAAAAATCCTTGCCGCTATAAGAGAGCTGTCCTTTTCATTTGCTCACTCAGTCGACAGTGGGTGA------GTG
TGAGTGTGAGGAAGCAGGCGCTGCGCTCTCAACGCGCGTGGTGGCACAGTTACGTCGCGCACTGGGCCTGCTTCCTCGAT
GCTATGGCCAACAGAGCTCCGAAAGATATGCCAATATGCTTATTTTATTCATTAATTTTCGCCACAAAAGATGCTTGGAT
GTGAAGTGTAGCCTCAACTAAGATACTTGTTCGACGGAAGAAAAGAAAAAGATCTAGTGCTAGGAGCAGTATGCTTGTCC
TTGCATGTGGTGCAGATTATGTGGC-AGATGTTGCTCCACGTAGGCGTTTAAGATAATGTCACTGAGCGCGTGACCCCAC
CACTCCCCGCGCTAATCCCCTTCCGCGCTACGCCGAGCAACCACCACTCAGCTATATATA--CTCCGCCGTTGCCTCATC
CAACCAAGCCTCACCGCTC------------------CTCTCTCAAGTGTCTCAACGCAGCAGCTAAACACGCTAAGCTA
CCTCGCTGCTTAATTACTCCACAGTCGACAGGCTCCCGGCGACACTGCGATCGTTCGATGGACGCCGCCGACGCCGCCTC
CCCGTGTGATGGCCACAGGACGGTGTGGTCGGAGCCGCCGAAGCGGCCGGCCGGCCGGACCAAGTTCAAGGAGACGCGCC
ACCCGCTGTACCGCGGCGTGCGGCGACGGGGCCCCGCCGGCCGGTGGGTGTGCGAGGTGCGCGTGCTCGGGATGAGGGGC
TCCAGGCTCTGGCTCGGCACCTTCACCACCGCTGAGATGGCAGCGCGCGCGCACGACGCCGCCGTTCTCGCGCTCTCTGG
GCGCGCCGCTTGTCTCAACTTCGCCGACTCCGCCTGGCGGATGCTCCCCGTCCTCGCCGGCCCG---------TTCAGCA
CCGCCAAGGAGATCAAGGACGCCGTCGCC------GTCGCCGTCCTGGCGTTCCAAAGGCAGCACCGGGTCGCGTCCATG
GCACCATTGTCCCCTGCGCGGACAACCGATGACGAGAAGGAAATCGATGGCTCGCCGGCGCCGAGCGCCCTGTTCATGTC
CAGCGAGCTGTTGAATGAGCACTGGTTTGGCGGCATGGATGCCGGATCGTTCTACTCGGAGGGCCTGTTCATGGAGTCGC
CGGACACCAGACCGTGGCGGGAAGACCTCGAGCTCTGTGGCGTCGAGACACCGCCATGGAGCTACTTGTTCGACTAAAGC
AGTTAAGTTAAATGTTTGTATAGATAGTTTCTCT-CTTCTGTTCCACCAAATATGGGAGGAAACAGAGGGGGATATTTTC
CCCATATGTCCGTATGTGCTCGTTCATTGTGAAAGCCTCCGCTGTCTATTTTTTGGGGAGGGCGCATTTGTACTTGAGTT
ATTTTTTCGGACAATCACTTTGAGTGTTTTTTTGTCGTTGAGTTGAATCACTTGAGTGTTCTAGTGAATACAGAATGAGT
ACTTCTCAATTATTATGGACCTCAAGCACTCCATGACCGACATAAGATATTACTCCTTCCGTTTCTAAATATAAGTCTTT
ATAGAGATTTCACTATAAACCACATACGGATGTATATAGATGCATTTTAGAGTATAGATTCACTCAATTTGCTCCGTATG
TATTCCATAGTGAAATCTCTACAAAGACTTATATTTAGGAATGGAGGAAGTATAATTTATGTCAATTGAAACCAGAAAAG
ACACTTCAAAAACAAGG-AAATACTTACACATTAAAGAACTTACGGCGTCACAGCTTGACAACGATGGACATGGACTGCT
TGTAAGAGAATTCCAAGAGCAGGTACTATTCGTTCAGATGAGGTTACCACAAATATCCCAAAGTCAGGGGTATAACCGTA
TAGTAGCGATCACTTGAGTGTTCTAGTGAATAAAGAATGTGTACCTCCGCAATTATTATGGGCACAAGATATTATATTTT
ATGTCAATAGAAACAAGAAAAGGCACTTAAAA----AATAACAATTGCATTATGAGAAAAGAAAGAAGAAAA-GACACAT
TGAAAAATTGTCACAGCTTGACAAAGATGGACTTGGACTGCTTGTAAGAGGATTCCAAGAGCATGCAGATACTATTCGTT
CAGGTGGGATGACC-GAAATATCTTAAGATCAGGGGTAAGCGCGTAACAACTATATATAAACAGCCATTAGCTCATGTAG
TTAGAGAGTTGGAAC-----------------------------------------------------------------
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>chr5A_999
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-------------------------------------------------------CGATGGACACCGCCGCCCCCGGCTC
CCCGCGTGAGGGGCACAGGACGGTGTGCTCCGAGCCGCCCAAGAGGCTGGCAGGGCGGACCAAGTTCAAGGAGACGCGCC
ACCCGCTGTACCGCGGCGTGCGGCGGCGGGGCCGGCTCGGGCAGTGGGTGTGCGAGGTGCGCGTGCGCGGCGCGCAAGGG
TACAGGCTCTGGCTCGGCACCTTCACCACTACCGAGATGGCGGCGCGCGCGCACGACTCCGCCGTCCTCGCGCTCCTCGA
CCGCGCCGCTTGCCTCAACTTCGCCGACTCCGCCTGGCGGATGCTGCCCGTCCTCGCGGCTGGCTCGTCCCGCTTCAGCA
GCGCGCGGGAGATCAAGGACGCCGTCGCC------GTCG------TGGAGTTCCAGCGGCAGCGGCCCGTCCTGTCCACG
CCGGA---------------GACGCACGACGGCGAAAAGGACGTCCAAGGCTCACCGACGCCGCGCGAGCTGTCCACGTC
CAGCGACTTGTTGGACGAGCACTGGTTTGGCGGCATGAACGCCGGCTCGTACTA--------------------------
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>chr5B_1000
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--------------------------------------------------------GATGGACACCGCCGCCCCCGGCTC
CCCGCGTGAGGGGCACAGGACGGTGTGCTCCGAGCCGCCCAAGAGGCCGGCAGGGCGGACCAAGTTTAAGGAGACGCGCC
ACCCGCTGTACCGCGGCGTGCGGCGGCGGGGCCGGCTCGGGCAGTGGGTGTGCGAGGTGCGCGTGCGCGGCGCGCAAGGG
TACAGGCTCTGGCTCGGCACCTTCACCACCGCCGAGATGGCGGCGCGCGCTCACGACTCCGCCGTGCTCGCGCTCCTCGA
CCGCGCCGCCTGCCTCAACTTCGCCGACTCCGCCTGGCGGATGCTGCCCGTCCTCGCGGCTGGCTCGTCCCGCTTCAGCA
GCGCGCGGGAGATCAAGGACGCGGTCGCCATCGCCATCG------TGGAGTTCCAGCGGCAGCGCCCCGTCGTGTCCACG
TCGGA---------------GACGCACGACGGCGAGAAGGACGTCCAAGGCTCGCCGACGCTGAGCGAGCTGTCCACGTC
CAGCGACTTGTTGGACGAGCACTGGTTTGGCGGCATGGACGCCGGCTCGTACTACGCG----------------------
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>chr5D_1000
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--------------------------------------------------------GATGGACACCGCCGCTGCCGGCTC
CCCGCGTGAGGGGCACAGGACGGTGTGCTCGGAGCCGCCCAAGAGGCCGGCAGGGCGGACCAAGTTCAGGGAGACGCGCC
ACCCGCTGTACCGCGGCGTGCGGCGCCGGGGCCGGCTCGGGCAGTGGGTGTGCGAGGTTCGCGTGCGCGGCGCGCAAGGG
TACAGGCTCTGGCTCGGCACCTTCACCACTGCCGAGATGGCGGCGCGCGCGCACGACTCCGCCGTGCTCGCGCTCCTCGA
CCGCGCCGCCTGCCTCAACTTCGCCGACTCCGCCTGGCGGATGCTGCCCGTCCTCGCGGCTGGCTCGTCCCGCTTCAGCA
GCGCGCGGGAGATCAAGGACGCCGTCGCCATCGCCGTCC------TGGAGTTCCAGCGGCAGCGCCCCGTCGTGTCAACG
TCGGA---------------GATGCACGACGGCGAAAAGGACGCCCAAGGCTCGCCGACGCCGAGCGAGCTGTCCACGTC
CAGCGACTTGTTGGACGAGCACTGGTTTGGCGGCATGGACGCCGGCTCGTACTACGCG----------------------
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>chr5D_1713
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------------------------------------------------------------------------------TC
CCCATATGTCCATATGTGCTCGTTCATTGTGAAAGCCTCCCCTGTCTATTTT-TGGGGAGGGCGCATTTGTACTTGAGTT
ATTTTTTCGGACAATCACTTTGAGTGTTTTTTTGTTGTTTTGTTGAATCACTTGAGTGTTCTAGTGAATACAGAATGAGT
ACTGCTCAATTATTATGGACCTCAAGCACTCCATGATCGACATAAGATATTA----------------------------
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----------------------------------------------------TAATTTCTGTCAATAGAAACCAGAAAAG
ATACTTCAAAAACAGGA-AAATACTTACACATTAAGGAACTTACGGCGTCACAGCTTGACAACGATGGACATGGACTGCT
TGTAAGAGACTTCCAAGAGCAGGTACTATTCGTTCAGATGAGGTTACCAGAAATATCACAAAGTCAGGGGTATAACCGTA
TAGTAGCGATCACTTGAGTGTTCTAGTGAATAAAGAACGTGTACCTCCGCAATTATTATGGGCATAAGATATTATATTTT
ATGTCAATAGAAACAAGAAAAGGCACTTCCAAAATTAATAACAATTGCATTATGAGAAAAGAAAGAAGAAAAAGACACAT
TGAAAAATTGTCACAGCTTGACAAAGATGGACTTGGACTGCTTGTAAGAGGATTCCAAGAGCATGCAGATACTATTCGTT
CAGGTGGGATGACCAGAAATATCTTAAGATCAGGGGTAAGCGTGTGACAACTATATATAAACTGCCATTAGCTCATGTAG
TTAGAGAGTTGGAAC-----------------------------------------------------------------
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----------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--------S-----------------------------S--S--S-----------------S---------------
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---------------------S------------------S---------------------------------------
----------------------------------------------------------S---------------------
-----------------S--------------------S---------------------------------------S-
-------------------------------------------------------------S------------------
------------------------------S------------------S------------------------------
--------------------------------------------S---------------SS------------------
----------------------S---------------------------------------------------------
-----------------S---------S----------------------------------------S-----------
---------------------------------S----------------------------------------------
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--------S-----------------------------------------------------------------------
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-S-----------------S------------------------------------------------------------
----------------------------------------------------S------S--------------------
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-------------S------------S-S------------------------------------------------SS-
------------S----S------S---------S--------------------------------S---S--------
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---------------------------------------S----------S-----------------------------
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-----------------S--------S-----------------------------------S-----------------
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---------S------------------------------------S--------------S------------------
-----------------------------------------S--------------------------------------
------S-----------------------S---------S---------------------------------------
--------------------------------------S--S-----------------------S--------------
--------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_148
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------------------------------------------------GATAAGGGAGGAGGGGTGGT------------
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>reverse_1694
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-------------ATGGCGGGAAGACTTTGAGC-----------------------------------------------
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----------------------------------------------------
>forward_149
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-------------------------------------------------ATAAGGGAGGAGGGGTGGTC-----------
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>reverse_2303
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--------------------------------------------------------------TGATGGACATGGACTGCT
TGT-----------------------------------------------------------------------------
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----------------------------------------------------
