Multiple sequence alignment - TraesCS5A01G292800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G292800 chr5A 100.000 3072 0 0 1 3072 502678723 502681794 0.000000e+00 5674.0
1 TraesCS5A01G292800 chr5A 84.321 574 69 12 1 565 502588292 502587731 2.690000e-150 542.0
2 TraesCS5A01G292800 chr5A 81.723 476 76 9 1842 2315 502585194 502584728 1.340000e-103 387.0
3 TraesCS5A01G292800 chr5A 83.434 332 39 8 652 974 502587703 502587379 8.330000e-76 294.0
4 TraesCS5A01G292800 chr5B 91.793 987 54 11 1 974 477515748 477516720 0.000000e+00 1349.0
5 TraesCS5A01G292800 chr5B 83.432 1515 162 35 1022 2486 477516970 477518445 0.000000e+00 1325.0
6 TraesCS5A01G292800 chr5B 93.600 125 3 4 2924 3047 477524611 477524731 6.770000e-42 182.0
7 TraesCS5A01G292800 chr5D 90.707 990 64 12 1 974 397335055 397336032 0.000000e+00 1293.0
8 TraesCS5A01G292800 chr5D 86.244 1105 96 21 1022 2105 397336282 397337351 0.000000e+00 1147.0
9 TraesCS5A01G292800 chr5D 83.642 593 73 12 1 582 397048501 397047922 1.250000e-148 536.0
10 TraesCS5A01G292800 chr5D 79.796 589 94 15 1734 2315 397045742 397045172 3.690000e-109 405.0
11 TraesCS5A01G292800 chr5D 84.320 338 37 8 652 980 397047908 397047578 1.780000e-82 316.0
12 TraesCS5A01G292800 chr5D 87.952 166 10 7 2887 3047 397337911 397338071 1.450000e-43 187.0
13 TraesCS5A01G292800 chr5D 84.466 103 8 6 2540 2636 397337816 397337916 9.070000e-16 95.3
14 TraesCS5A01G292800 chr7D 100.000 48 0 0 223 270 66991886 66991839 4.220000e-14 89.8
15 TraesCS5A01G292800 chr4D 97.917 48 1 0 223 270 248219659 248219612 1.960000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G292800 chr5A 502678723 502681794 3071 False 5674.000000 5674 100.000000 1 3072 1 chr5A.!!$F1 3071
1 TraesCS5A01G292800 chr5A 502584728 502588292 3564 True 407.666667 542 83.159333 1 2315 3 chr5A.!!$R1 2314
2 TraesCS5A01G292800 chr5B 477515748 477518445 2697 False 1337.000000 1349 87.612500 1 2486 2 chr5B.!!$F2 2485
3 TraesCS5A01G292800 chr5D 397335055 397338071 3016 False 680.575000 1293 87.342250 1 3047 4 chr5D.!!$F1 3046
4 TraesCS5A01G292800 chr5D 397045172 397048501 3329 True 419.000000 536 82.586000 1 2315 3 chr5D.!!$R1 2314

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 327 0.179468 TTGTATAGAGGTTGCCCGGC 59.821 55.0 1.04 1.04 35.12 6.13 F
666 687 0.380378 TGTCTTTTCTTTGCGCGCTT 59.620 45.0 33.29 0.00 0.00 4.68 F
1715 3816 0.529378 CCTGGTTGCCTTCTTGATGC 59.471 55.0 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 3906 0.030369 AACGCAGAAACGAGACGAGT 59.970 50.0 0.00 0.0 36.70 4.18 R
1810 3950 0.109412 GCCTGACAGAACATTGCAGC 60.109 55.0 3.32 0.0 0.00 5.25 R
2838 5100 0.105039 GCAGCGTTATCAGCCTACCT 59.895 55.0 0.00 0.0 34.64 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.405585 TGCTCCCAAAGGAAGAAGGG 59.594 55.000 0.00 0.00 43.40 3.95
60 61 1.202510 TGAGGTTGCCAACACAATTGC 60.203 47.619 10.18 0.00 0.00 3.56
63 64 1.219646 GTTGCCAACACAATTGCCAG 58.780 50.000 5.05 0.00 0.00 4.85
72 73 2.056223 CAATTGCCAGGGCCTCCAG 61.056 63.158 0.95 0.00 41.09 3.86
76 77 3.791586 GCCAGGGCCTCCAGTCTC 61.792 72.222 0.95 0.00 34.83 3.36
91 93 4.656112 TCCAGTCTCATAAAATCCCTCTCC 59.344 45.833 0.00 0.00 0.00 3.71
157 159 2.567615 AGGTGTCCGCTGTCTTATTTCT 59.432 45.455 0.00 0.00 0.00 2.52
171 173 9.868277 CTGTCTTATTTCTGAAGATTACAGTCT 57.132 33.333 10.94 0.00 35.46 3.24
185 187 1.638133 CAGTCTGCTGTCCATTCTCG 58.362 55.000 0.00 0.00 37.92 4.04
196 198 5.089970 TGTCCATTCTCGTTGAAGATGAT 57.910 39.130 1.02 0.00 38.18 2.45
265 270 8.635765 TTTAAGAAAAGTCTTACATGCATCCT 57.364 30.769 0.00 0.00 44.35 3.24
266 271 6.749923 AAGAAAAGTCTTACATGCATCCTC 57.250 37.500 0.00 0.00 42.53 3.71
299 304 5.991933 TTATGCAGAGAAGAGTTGAGACT 57.008 39.130 0.00 0.00 39.32 3.24
301 306 4.775058 TGCAGAGAAGAGTTGAGACTAC 57.225 45.455 0.00 0.00 35.88 2.73
322 327 0.179468 TTGTATAGAGGTTGCCCGGC 59.821 55.000 1.04 1.04 35.12 6.13
341 346 2.354259 GCTTGGAGATCTGTGTGAAGG 58.646 52.381 0.00 0.00 0.00 3.46
342 347 2.354259 CTTGGAGATCTGTGTGAAGGC 58.646 52.381 0.00 0.00 0.00 4.35
487 502 6.063640 TGTTCTTGTCAATGAACAGATGTG 57.936 37.500 18.60 0.00 44.89 3.21
599 620 8.091449 GGTCAGTATTTCTTCTTGAGAGAGAAA 58.909 37.037 14.67 14.67 35.38 2.52
619 640 4.701956 AATTTCTAAACCATGGTCGCAG 57.298 40.909 20.07 15.17 0.00 5.18
639 660 3.003068 CAGAGCTGTTTTCACCTGACAAG 59.997 47.826 0.00 0.00 0.00 3.16
643 664 2.023673 TGTTTTCACCTGACAAGCCAG 58.976 47.619 0.00 0.00 0.00 4.85
652 673 2.355513 CCTGACAAGCCAGCTATGTCTT 60.356 50.000 23.13 3.81 42.99 3.01
661 682 3.751621 CCAGCTATGTCTTTTCTTTGCG 58.248 45.455 0.00 0.00 0.00 4.85
666 687 0.380378 TGTCTTTTCTTTGCGCGCTT 59.620 45.000 33.29 0.00 0.00 4.68
709 730 5.173774 TCAGCAGACAAAACACTGAAATC 57.826 39.130 0.00 0.00 34.59 2.17
718 739 4.993029 AAACACTGAAATCCCGTTTTCA 57.007 36.364 5.61 5.61 41.92 2.69
778 799 1.123077 ACTGGACAGACTTGAGCACA 58.877 50.000 6.29 0.00 0.00 4.57
844 869 6.095720 AGTCTCCTCTCCTTTCTAATTACACG 59.904 42.308 0.00 0.00 0.00 4.49
863 892 3.248363 CACGGTAACCATATGCAGATGTG 59.752 47.826 19.36 13.11 0.00 3.21
974 1003 8.074370 TCGAAGAGTATGGAAGATGTAATAACG 58.926 37.037 0.00 0.00 0.00 3.18
976 1005 7.050970 AGAGTATGGAAGATGTAATAACGCA 57.949 36.000 0.00 0.00 0.00 5.24
977 1006 7.671302 AGAGTATGGAAGATGTAATAACGCAT 58.329 34.615 0.00 0.00 0.00 4.73
979 1008 7.441836 AGTATGGAAGATGTAATAACGCATGA 58.558 34.615 0.00 0.00 0.00 3.07
980 1009 6.791887 ATGGAAGATGTAATAACGCATGAG 57.208 37.500 0.00 0.00 0.00 2.90
981 1010 5.056480 TGGAAGATGTAATAACGCATGAGG 58.944 41.667 0.00 0.00 0.00 3.86
982 1011 5.163353 TGGAAGATGTAATAACGCATGAGGA 60.163 40.000 0.00 0.00 0.00 3.71
983 1012 5.758296 GGAAGATGTAATAACGCATGAGGAA 59.242 40.000 0.00 0.00 0.00 3.36
984 1013 6.428159 GGAAGATGTAATAACGCATGAGGAAT 59.572 38.462 0.00 0.00 0.00 3.01
988 1017 6.603237 TGTAATAACGCATGAGGAATTGAG 57.397 37.500 0.00 0.00 0.00 3.02
1010 1039 5.533482 AGGACGATGACTTATGATTAGTGC 58.467 41.667 0.00 0.00 0.00 4.40
1052 1302 4.079253 GCTTTGGTATGTCTCCCTTTTCA 58.921 43.478 0.00 0.00 0.00 2.69
1055 1305 4.927267 TGGTATGTCTCCCTTTTCACAT 57.073 40.909 0.00 0.00 33.95 3.21
1103 2720 2.814919 CCAAAACACACATACCCGCTTA 59.185 45.455 0.00 0.00 0.00 3.09
1106 2723 4.759516 AAACACACATACCCGCTTAAAG 57.240 40.909 0.00 0.00 0.00 1.85
1107 2724 3.412237 ACACACATACCCGCTTAAAGT 57.588 42.857 0.00 0.00 0.00 2.66
1121 2738 7.039293 ACCCGCTTAAAGTTCAAAATTAAGGAT 60.039 33.333 6.63 0.00 37.20 3.24
1122 2739 7.488150 CCCGCTTAAAGTTCAAAATTAAGGATC 59.512 37.037 6.63 0.00 37.20 3.36
1123 2740 7.488150 CCGCTTAAAGTTCAAAATTAAGGATCC 59.512 37.037 2.48 2.48 37.20 3.36
1124 2741 8.244113 CGCTTAAAGTTCAAAATTAAGGATCCT 58.756 33.333 9.02 9.02 37.20 3.24
1125 2742 9.929180 GCTTAAAGTTCAAAATTAAGGATCCTT 57.071 29.630 29.43 29.43 37.20 3.36
1168 2785 4.152647 TCAGACAAGAGTAAAGCAGAGGA 58.847 43.478 0.00 0.00 0.00 3.71
1246 3334 5.591643 TTTCGTTGACTCTTGTTATGCTC 57.408 39.130 0.00 0.00 0.00 4.26
1257 3345 9.703892 GACTCTTGTTATGCTCTAATGACATAT 57.296 33.333 0.00 0.00 0.00 1.78
1314 3402 1.534729 GTTCCTCAAAATGCTCGGGT 58.465 50.000 0.00 0.00 0.00 5.28
1318 3406 0.962356 CTCAAAATGCTCGGGTGGCT 60.962 55.000 0.00 0.00 0.00 4.75
1406 3494 1.275291 TCGGAGAAAAGCAGGTAGGTG 59.725 52.381 0.00 0.00 0.00 4.00
1436 3524 9.630098 AACTCTTTTCAGCAAACATTACATATG 57.370 29.630 0.00 0.00 0.00 1.78
1450 3547 9.520515 AACATTACATATGAATAGGGAATCCAC 57.479 33.333 10.38 0.00 25.85 4.02
1463 3560 2.024941 GGAATCCACCCCTTGTCATCTT 60.025 50.000 0.00 0.00 0.00 2.40
1532 3629 2.752354 TGAAATGAACAGGGTATTGCGG 59.248 45.455 0.00 0.00 0.00 5.69
1571 3668 4.141711 GCAGAATCCACCAGGTACTTCATA 60.142 45.833 0.00 0.00 34.60 2.15
1575 3672 4.546829 TCCACCAGGTACTTCATACAAC 57.453 45.455 0.00 0.00 34.60 3.32
1589 3686 7.636326 ACTTCATACAACTTTTCCAGTTAACG 58.364 34.615 0.00 0.00 44.60 3.18
1602 3699 3.243975 CCAGTTAACGGAACACCACTACT 60.244 47.826 7.37 0.00 40.86 2.57
1603 3700 4.374399 CAGTTAACGGAACACCACTACTT 58.626 43.478 0.00 0.00 40.86 2.24
1604 3701 5.509501 CCAGTTAACGGAACACCACTACTTA 60.510 44.000 7.37 0.00 40.86 2.24
1605 3702 5.984926 CAGTTAACGGAACACCACTACTTAA 59.015 40.000 0.00 0.00 40.86 1.85
1606 3703 6.479660 CAGTTAACGGAACACCACTACTTAAA 59.520 38.462 0.00 0.00 40.86 1.52
1607 3704 6.703165 AGTTAACGGAACACCACTACTTAAAG 59.297 38.462 0.00 0.00 40.86 1.85
1608 3705 4.942761 ACGGAACACCACTACTTAAAGA 57.057 40.909 0.00 0.00 0.00 2.52
1609 3706 4.879598 ACGGAACACCACTACTTAAAGAG 58.120 43.478 0.00 0.00 0.00 2.85
1715 3816 0.529378 CCTGGTTGCCTTCTTGATGC 59.471 55.000 0.00 0.00 0.00 3.91
1726 3829 3.428999 CCTTCTTGATGCATCAGGCTTTG 60.429 47.826 28.79 18.49 45.15 2.77
1758 3876 1.134729 GGGCGATGAAAGGGTACGTAA 60.135 52.381 0.00 0.00 0.00 3.18
1880 4022 2.335681 TTACAGGATGGAGGGTGTCA 57.664 50.000 0.00 0.00 43.62 3.58
1912 4054 4.616181 AACAAACTGGTTCGAACAAGAG 57.384 40.909 34.13 24.45 34.01 2.85
1914 4056 4.258543 ACAAACTGGTTCGAACAAGAGAA 58.741 39.130 34.13 10.44 34.01 2.87
1919 4061 4.692625 ACTGGTTCGAACAAGAGAATCATG 59.307 41.667 34.13 10.04 40.19 3.07
2079 4221 1.066502 GGAGGAGAAGTGAGTCCAAGC 60.067 57.143 0.00 0.00 35.02 4.01
2142 4290 6.755461 AGCATCTGAATTAACTTATCGTCG 57.245 37.500 0.00 0.00 0.00 5.12
2179 4327 1.143684 GCAATGAGGGGATAAGGCAGA 59.856 52.381 0.00 0.00 0.00 4.26
2180 4328 2.813354 GCAATGAGGGGATAAGGCAGAG 60.813 54.545 0.00 0.00 0.00 3.35
2228 4381 4.627058 TCTTCAGATGCGTCAAACAGTTA 58.373 39.130 8.99 0.00 0.00 2.24
2238 4391 4.871222 CGTCAAACAGTTATAACGCTGAG 58.129 43.478 9.91 2.63 36.62 3.35
2239 4392 4.201589 CGTCAAACAGTTATAACGCTGAGG 60.202 45.833 9.91 11.78 36.62 3.86
2247 4402 5.006746 CAGTTATAACGCTGAGGGAAATGAC 59.993 44.000 9.91 3.49 34.87 3.06
2249 4404 0.693049 AACGCTGAGGGAAATGACCT 59.307 50.000 2.65 0.00 42.18 3.85
2271 4426 5.428496 TGATTCTTGTGAAGTTTCAGCTG 57.572 39.130 7.63 7.63 37.98 4.24
2302 4458 5.504830 GGCTCTCTGTTGTTTCTGAAACTTC 60.505 44.000 27.75 21.07 41.90 3.01
2319 4475 5.359194 AACTTCTCCAAGAACTCTGTTCA 57.641 39.130 12.16 0.00 33.34 3.18
2323 4479 3.960755 TCTCCAAGAACTCTGTTCACTCA 59.039 43.478 12.16 0.00 0.00 3.41
2329 4485 6.461648 CCAAGAACTCTGTTCACTCAGTCTTA 60.462 42.308 12.16 0.00 36.85 2.10
2373 4535 6.000840 TGATAACCTCACATTTGTGCAGTTA 58.999 36.000 18.91 18.91 45.25 2.24
2375 4537 4.085357 ACCTCACATTTGTGCAGTTAGA 57.915 40.909 5.81 0.00 45.25 2.10
2378 4540 5.536161 ACCTCACATTTGTGCAGTTAGATTT 59.464 36.000 5.81 0.00 45.25 2.17
2402 4564 5.702865 TCTGCATCTTTTTAGACATGTTGC 58.297 37.500 0.00 2.87 0.00 4.17
2407 4569 8.306038 TGCATCTTTTTAGACATGTTGCTTTAT 58.694 29.630 12.93 0.00 0.00 1.40
2418 4580 7.750458 AGACATGTTGCTTTATATTTGAACACG 59.250 33.333 0.00 0.00 0.00 4.49
2421 4583 7.135089 TGTTGCTTTATATTTGAACACGCTA 57.865 32.000 0.00 0.00 0.00 4.26
2424 4586 8.523464 GTTGCTTTATATTTGAACACGCTATTG 58.477 33.333 0.00 0.00 0.00 1.90
2463 4664 7.847711 ATCCAGTACTTCTTATCTGCTGTAT 57.152 36.000 0.00 0.00 0.00 2.29
2464 4665 8.941995 ATCCAGTACTTCTTATCTGCTGTATA 57.058 34.615 0.00 0.00 0.00 1.47
2465 4666 8.167605 TCCAGTACTTCTTATCTGCTGTATAC 57.832 38.462 0.00 0.00 0.00 1.47
2466 4667 7.778382 TCCAGTACTTCTTATCTGCTGTATACA 59.222 37.037 5.25 5.25 0.00 2.29
2482 4683 9.781834 TGCTGTATACAAAACAAAATACTATGC 57.218 29.630 7.06 1.73 0.00 3.14
2490 4712 8.147058 ACAAAACAAAATACTATGCCAATGTCA 58.853 29.630 0.00 0.00 0.00 3.58
2499 4721 5.797051 ACTATGCCAATGTCATTTTTGCTT 58.203 33.333 0.00 1.17 0.00 3.91
2501 4723 4.069300 TGCCAATGTCATTTTTGCTTGA 57.931 36.364 0.00 0.00 0.00 3.02
2505 4727 5.782047 CCAATGTCATTTTTGCTTGACCTA 58.218 37.500 0.00 0.00 41.22 3.08
2507 4729 6.532657 CCAATGTCATTTTTGCTTGACCTATC 59.467 38.462 0.00 0.00 41.22 2.08
2513 4735 8.181573 GTCATTTTTGCTTGACCTATCGAAATA 58.818 33.333 0.00 0.00 36.98 1.40
2515 4737 9.173939 CATTTTTGCTTGACCTATCGAAATATC 57.826 33.333 0.00 0.00 0.00 1.63
2516 4738 8.506168 TTTTTGCTTGACCTATCGAAATATCT 57.494 30.769 0.00 0.00 0.00 1.98
2518 4740 8.506168 TTTGCTTGACCTATCGAAATATCTTT 57.494 30.769 0.00 0.00 0.00 2.52
2519 4741 7.715265 TGCTTGACCTATCGAAATATCTTTC 57.285 36.000 0.00 0.00 37.90 2.62
2538 4760 6.954944 TCTTTCGTTTTCTGTAGTGGAATTG 58.045 36.000 0.00 0.00 0.00 2.32
2544 4766 7.698970 TCGTTTTCTGTAGTGGAATTGTTTTTC 59.301 33.333 0.00 0.00 0.00 2.29
2553 4775 7.497925 AGTGGAATTGTTTTTCTGACTACTC 57.502 36.000 0.00 0.00 0.00 2.59
2588 4845 0.322906 TGATGCGTTACATGGGGCAA 60.323 50.000 0.00 0.00 39.84 4.52
2589 4846 1.032014 GATGCGTTACATGGGGCAAT 58.968 50.000 0.00 0.00 39.84 3.56
2590 4847 1.001378 GATGCGTTACATGGGGCAATC 60.001 52.381 0.00 0.00 39.84 2.67
2597 4854 4.244862 GTTACATGGGGCAATCACAAAAG 58.755 43.478 0.00 0.00 0.00 2.27
2601 4858 3.959535 TGGGGCAATCACAAAAGAATC 57.040 42.857 0.00 0.00 0.00 2.52
2602 4859 3.509442 TGGGGCAATCACAAAAGAATCT 58.491 40.909 0.00 0.00 0.00 2.40
2603 4860 3.258872 TGGGGCAATCACAAAAGAATCTG 59.741 43.478 0.00 0.00 0.00 2.90
2604 4861 3.259123 GGGGCAATCACAAAAGAATCTGT 59.741 43.478 0.00 0.00 0.00 3.41
2605 4862 4.462483 GGGGCAATCACAAAAGAATCTGTA 59.538 41.667 0.00 0.00 0.00 2.74
2606 4863 5.047377 GGGGCAATCACAAAAGAATCTGTAA 60.047 40.000 0.00 0.00 0.00 2.41
2607 4864 6.454795 GGGCAATCACAAAAGAATCTGTAAA 58.545 36.000 0.00 0.00 0.00 2.01
2608 4865 6.366061 GGGCAATCACAAAAGAATCTGTAAAC 59.634 38.462 0.00 0.00 0.00 2.01
2609 4866 6.366061 GGCAATCACAAAAGAATCTGTAAACC 59.634 38.462 0.00 0.00 0.00 3.27
2619 4881 6.926630 AGAATCTGTAAACCTCTCTCAAGT 57.073 37.500 0.00 0.00 0.00 3.16
2643 4905 6.462073 TTGAGTTATACTGAAACGTCAAGC 57.538 37.500 0.00 0.00 31.88 4.01
2644 4906 5.534407 TGAGTTATACTGAAACGTCAAGCA 58.466 37.500 0.00 0.00 31.88 3.91
2645 4907 6.163476 TGAGTTATACTGAAACGTCAAGCAT 58.837 36.000 0.00 0.00 31.88 3.79
2646 4908 6.090763 TGAGTTATACTGAAACGTCAAGCATG 59.909 38.462 0.00 0.00 31.88 4.06
2647 4909 5.932303 AGTTATACTGAAACGTCAAGCATGT 59.068 36.000 0.00 0.00 31.88 3.21
2648 4910 4.928661 ATACTGAAACGTCAAGCATGTC 57.071 40.909 0.00 0.00 31.88 3.06
2649 4911 2.560504 ACTGAAACGTCAAGCATGTCA 58.439 42.857 0.00 0.00 31.88 3.58
2650 4912 2.942376 ACTGAAACGTCAAGCATGTCAA 59.058 40.909 0.00 0.00 31.88 3.18
2651 4913 3.242739 ACTGAAACGTCAAGCATGTCAAC 60.243 43.478 0.00 0.00 31.88 3.18
2652 4914 2.032799 TGAAACGTCAAGCATGTCAACC 59.967 45.455 0.00 0.00 0.00 3.77
2653 4915 1.674359 AACGTCAAGCATGTCAACCA 58.326 45.000 0.00 0.00 0.00 3.67
2654 4916 1.229428 ACGTCAAGCATGTCAACCAG 58.771 50.000 0.00 0.00 0.00 4.00
2655 4917 0.518636 CGTCAAGCATGTCAACCAGG 59.481 55.000 0.00 0.00 0.00 4.45
2656 4918 0.883833 GTCAAGCATGTCAACCAGGG 59.116 55.000 0.00 0.00 0.00 4.45
2657 4919 0.251297 TCAAGCATGTCAACCAGGGG 60.251 55.000 0.00 0.00 0.00 4.79
2658 4920 1.607467 AAGCATGTCAACCAGGGGC 60.607 57.895 0.00 0.00 0.00 5.80
2659 4921 3.070576 GCATGTCAACCAGGGGCC 61.071 66.667 0.00 0.00 0.00 5.80
2660 4922 2.440147 CATGTCAACCAGGGGCCA 59.560 61.111 4.39 0.00 0.00 5.36
2661 4923 1.000739 CATGTCAACCAGGGGCCAT 59.999 57.895 4.39 0.00 0.00 4.40
2662 4924 0.258484 CATGTCAACCAGGGGCCATA 59.742 55.000 4.39 0.00 0.00 2.74
2663 4925 1.133388 CATGTCAACCAGGGGCCATAT 60.133 52.381 4.39 0.00 0.00 1.78
2664 4926 1.900254 TGTCAACCAGGGGCCATATA 58.100 50.000 4.39 0.00 0.00 0.86
2665 4927 2.209758 TGTCAACCAGGGGCCATATAA 58.790 47.619 4.39 0.00 0.00 0.98
2666 4928 2.583101 TGTCAACCAGGGGCCATATAAA 59.417 45.455 4.39 0.00 0.00 1.40
2667 4929 3.206412 TGTCAACCAGGGGCCATATAAAT 59.794 43.478 4.39 0.00 0.00 1.40
2668 4930 4.223144 GTCAACCAGGGGCCATATAAATT 58.777 43.478 4.39 0.00 0.00 1.82
2669 4931 5.103473 TGTCAACCAGGGGCCATATAAATTA 60.103 40.000 4.39 0.00 0.00 1.40
2670 4932 6.016555 GTCAACCAGGGGCCATATAAATTAT 58.983 40.000 4.39 0.00 0.00 1.28
2671 4933 7.179269 GTCAACCAGGGGCCATATAAATTATA 58.821 38.462 4.39 0.00 0.00 0.98
2672 4934 7.672239 GTCAACCAGGGGCCATATAAATTATAA 59.328 37.037 4.39 0.00 0.00 0.98
2673 4935 8.235230 TCAACCAGGGGCCATATAAATTATAAA 58.765 33.333 4.39 0.00 0.00 1.40
2674 4936 9.045745 CAACCAGGGGCCATATAAATTATAAAT 57.954 33.333 4.39 0.00 0.00 1.40
2692 4954 9.947433 ATTATAAATATAATTTCGGTCCGGACA 57.053 29.630 34.40 15.91 35.86 4.02
2693 4955 9.775854 TTATAAATATAATTTCGGTCCGGACAA 57.224 29.630 34.40 21.28 0.00 3.18
2694 4956 6.613755 AAATATAATTTCGGTCCGGACAAG 57.386 37.500 34.40 26.42 0.00 3.16
2695 4957 3.622166 ATAATTTCGGTCCGGACAAGT 57.378 42.857 34.40 21.64 0.00 3.16
2696 4958 2.265589 AATTTCGGTCCGGACAAGTT 57.734 45.000 34.40 20.64 0.00 2.66
2697 4959 2.265589 ATTTCGGTCCGGACAAGTTT 57.734 45.000 34.40 14.21 0.00 2.66
2698 4960 1.301423 TTTCGGTCCGGACAAGTTTG 58.699 50.000 34.40 16.54 0.00 2.93
2699 4961 0.464870 TTCGGTCCGGACAAGTTTGA 59.535 50.000 34.40 18.41 0.00 2.69
2700 4962 0.682852 TCGGTCCGGACAAGTTTGAT 59.317 50.000 34.40 0.00 0.00 2.57
2701 4963 1.894466 TCGGTCCGGACAAGTTTGATA 59.106 47.619 34.40 9.16 0.00 2.15
2702 4964 2.299582 TCGGTCCGGACAAGTTTGATAA 59.700 45.455 34.40 8.48 0.00 1.75
2703 4965 2.671396 CGGTCCGGACAAGTTTGATAAG 59.329 50.000 34.40 7.74 0.00 1.73
2704 4966 3.007635 GGTCCGGACAAGTTTGATAAGG 58.992 50.000 34.40 0.00 0.00 2.69
2705 4967 3.307199 GGTCCGGACAAGTTTGATAAGGA 60.307 47.826 34.40 0.00 0.00 3.36
2706 4968 4.320870 GTCCGGACAAGTTTGATAAGGAA 58.679 43.478 29.75 0.00 0.00 3.36
2707 4969 4.941873 GTCCGGACAAGTTTGATAAGGAAT 59.058 41.667 29.75 0.00 0.00 3.01
2708 4970 5.414765 GTCCGGACAAGTTTGATAAGGAATT 59.585 40.000 29.75 0.00 0.00 2.17
2709 4971 6.596497 GTCCGGACAAGTTTGATAAGGAATTA 59.404 38.462 29.75 0.00 0.00 1.40
2710 4972 7.282450 GTCCGGACAAGTTTGATAAGGAATTAT 59.718 37.037 29.75 0.00 0.00 1.28
2711 4973 8.487848 TCCGGACAAGTTTGATAAGGAATTATA 58.512 33.333 0.00 0.00 0.00 0.98
2712 4974 9.116067 CCGGACAAGTTTGATAAGGAATTATAA 57.884 33.333 0.00 0.00 0.00 0.98
2737 4999 7.857734 ATATGGTCACAATTTATGAACGTCA 57.142 32.000 3.05 0.00 36.51 4.35
2738 5000 5.605564 TGGTCACAATTTATGAACGTCAG 57.394 39.130 0.00 0.00 36.51 3.51
2739 5001 5.301555 TGGTCACAATTTATGAACGTCAGA 58.698 37.500 0.00 0.00 36.51 3.27
2740 5002 5.408299 TGGTCACAATTTATGAACGTCAGAG 59.592 40.000 0.00 0.00 36.51 3.35
2741 5003 5.316770 GTCACAATTTATGAACGTCAGAGC 58.683 41.667 0.00 0.00 0.00 4.09
2742 5004 4.994217 TCACAATTTATGAACGTCAGAGCA 59.006 37.500 0.00 0.00 0.00 4.26
2743 5005 5.643348 TCACAATTTATGAACGTCAGAGCAT 59.357 36.000 0.00 0.00 0.00 3.79
2744 5006 5.735892 CACAATTTATGAACGTCAGAGCATG 59.264 40.000 0.00 0.00 0.00 4.06
2745 5007 5.643348 ACAATTTATGAACGTCAGAGCATGA 59.357 36.000 0.00 0.00 34.79 3.07
2758 5020 5.840715 TCAGAGCATGACTAAGATGATCAC 58.159 41.667 0.00 0.00 38.45 3.06
2759 5021 5.361857 TCAGAGCATGACTAAGATGATCACA 59.638 40.000 0.00 0.00 38.45 3.58
2760 5022 6.047231 CAGAGCATGACTAAGATGATCACAA 58.953 40.000 0.00 0.00 38.45 3.33
2761 5023 6.706716 CAGAGCATGACTAAGATGATCACAAT 59.293 38.462 0.00 0.00 38.45 2.71
2762 5024 7.226918 CAGAGCATGACTAAGATGATCACAATT 59.773 37.037 0.00 0.00 38.45 2.32
2763 5025 8.427276 AGAGCATGACTAAGATGATCACAATTA 58.573 33.333 0.00 0.00 38.45 1.40
2764 5026 8.604640 AGCATGACTAAGATGATCACAATTAG 57.395 34.615 16.31 16.31 36.41 1.73
2765 5027 8.209584 AGCATGACTAAGATGATCACAATTAGT 58.790 33.333 20.65 20.65 41.18 2.24
2766 5028 9.481340 GCATGACTAAGATGATCACAATTAGTA 57.519 33.333 20.59 13.41 39.93 1.82
2809 5071 2.351706 TTTTCTTTGCGGGTGGTACT 57.648 45.000 0.00 0.00 0.00 2.73
2810 5072 3.488778 TTTTCTTTGCGGGTGGTACTA 57.511 42.857 0.00 0.00 0.00 1.82
2811 5073 3.488778 TTTCTTTGCGGGTGGTACTAA 57.511 42.857 0.00 0.00 0.00 2.24
2812 5074 3.706600 TTCTTTGCGGGTGGTACTAAT 57.293 42.857 0.00 0.00 0.00 1.73
2813 5075 3.255969 TCTTTGCGGGTGGTACTAATC 57.744 47.619 0.00 0.00 0.00 1.75
2814 5076 2.835764 TCTTTGCGGGTGGTACTAATCT 59.164 45.455 0.00 0.00 0.00 2.40
2815 5077 4.025360 TCTTTGCGGGTGGTACTAATCTA 58.975 43.478 0.00 0.00 0.00 1.98
2816 5078 4.467082 TCTTTGCGGGTGGTACTAATCTAA 59.533 41.667 0.00 0.00 0.00 2.10
2817 5079 5.129815 TCTTTGCGGGTGGTACTAATCTAAT 59.870 40.000 0.00 0.00 0.00 1.73
2818 5080 6.324512 TCTTTGCGGGTGGTACTAATCTAATA 59.675 38.462 0.00 0.00 0.00 0.98
2819 5081 5.458041 TGCGGGTGGTACTAATCTAATAC 57.542 43.478 0.00 0.00 0.00 1.89
2820 5082 5.142639 TGCGGGTGGTACTAATCTAATACT 58.857 41.667 0.00 0.00 0.00 2.12
2821 5083 5.599656 TGCGGGTGGTACTAATCTAATACTT 59.400 40.000 0.00 0.00 0.00 2.24
2822 5084 6.155136 GCGGGTGGTACTAATCTAATACTTC 58.845 44.000 0.00 0.00 0.00 3.01
2823 5085 6.239120 GCGGGTGGTACTAATCTAATACTTCA 60.239 42.308 0.00 0.00 0.00 3.02
2824 5086 7.525029 GCGGGTGGTACTAATCTAATACTTCAT 60.525 40.741 0.00 0.00 0.00 2.57
2825 5087 8.027771 CGGGTGGTACTAATCTAATACTTCATC 58.972 40.741 0.00 0.00 0.00 2.92
2826 5088 8.312564 GGGTGGTACTAATCTAATACTTCATCC 58.687 40.741 0.00 0.00 0.00 3.51
2827 5089 9.091220 GGTGGTACTAATCTAATACTTCATCCT 57.909 37.037 0.00 0.00 0.00 3.24
2841 5103 8.964533 ATACTTCATCCTCTAATGACATAGGT 57.035 34.615 3.22 0.00 35.44 3.08
2843 5105 8.415950 ACTTCATCCTCTAATGACATAGGTAG 57.584 38.462 3.22 0.00 35.44 3.18
2844 5106 7.453126 ACTTCATCCTCTAATGACATAGGTAGG 59.547 40.741 3.22 2.27 35.44 3.18
2845 5107 5.717178 TCATCCTCTAATGACATAGGTAGGC 59.283 44.000 3.22 0.00 30.76 3.93
2846 5108 5.340891 TCCTCTAATGACATAGGTAGGCT 57.659 43.478 3.22 0.00 0.00 4.58
2847 5109 5.080337 TCCTCTAATGACATAGGTAGGCTG 58.920 45.833 0.00 0.00 0.00 4.85
2848 5110 5.080337 CCTCTAATGACATAGGTAGGCTGA 58.920 45.833 0.00 0.00 0.00 4.26
2849 5111 5.719085 CCTCTAATGACATAGGTAGGCTGAT 59.281 44.000 0.00 0.00 0.00 2.90
2850 5112 6.892456 CCTCTAATGACATAGGTAGGCTGATA 59.108 42.308 0.00 0.00 0.00 2.15
2851 5113 7.397476 CCTCTAATGACATAGGTAGGCTGATAA 59.603 40.741 0.00 0.00 0.00 1.75
2852 5114 8.123639 TCTAATGACATAGGTAGGCTGATAAC 57.876 38.462 0.00 0.00 0.00 1.89
2853 5115 4.848562 TGACATAGGTAGGCTGATAACG 57.151 45.455 0.00 0.00 0.00 3.18
2854 5116 3.005472 TGACATAGGTAGGCTGATAACGC 59.995 47.826 0.00 0.00 0.00 4.84
2855 5117 3.231818 ACATAGGTAGGCTGATAACGCT 58.768 45.455 0.00 0.00 0.00 5.07
2856 5118 3.005897 ACATAGGTAGGCTGATAACGCTG 59.994 47.826 0.00 0.00 0.00 5.18
2857 5119 0.105039 AGGTAGGCTGATAACGCTGC 59.895 55.000 0.00 0.00 0.00 5.25
2858 5120 0.105039 GGTAGGCTGATAACGCTGCT 59.895 55.000 0.00 0.00 33.78 4.24
2859 5121 1.212616 GTAGGCTGATAACGCTGCTG 58.787 55.000 0.00 0.00 33.78 4.41
2860 5122 1.111277 TAGGCTGATAACGCTGCTGA 58.889 50.000 0.00 0.00 33.78 4.26
2861 5123 0.250234 AGGCTGATAACGCTGCTGAA 59.750 50.000 0.00 0.00 33.78 3.02
2862 5124 1.134280 AGGCTGATAACGCTGCTGAAT 60.134 47.619 0.00 0.00 33.78 2.57
2863 5125 1.262683 GGCTGATAACGCTGCTGAATC 59.737 52.381 0.00 0.00 33.78 2.52
2864 5126 1.070975 GCTGATAACGCTGCTGAATCG 60.071 52.381 0.00 0.00 0.00 3.34
2865 5127 0.930310 TGATAACGCTGCTGAATCGC 59.070 50.000 0.00 0.00 0.00 4.58
2866 5128 1.212616 GATAACGCTGCTGAATCGCT 58.787 50.000 0.00 0.00 0.00 4.93
2867 5129 0.933097 ATAACGCTGCTGAATCGCTG 59.067 50.000 0.00 0.54 0.00 5.18
2868 5130 0.108851 TAACGCTGCTGAATCGCTGA 60.109 50.000 0.00 0.00 0.00 4.26
2869 5131 0.742281 AACGCTGCTGAATCGCTGAT 60.742 50.000 0.00 0.00 0.00 2.90
2870 5132 1.275953 CGCTGCTGAATCGCTGATG 59.724 57.895 0.00 0.00 0.00 3.07
2871 5133 1.647629 GCTGCTGAATCGCTGATGG 59.352 57.895 0.00 0.00 0.00 3.51
2872 5134 0.812811 GCTGCTGAATCGCTGATGGA 60.813 55.000 0.00 0.00 0.00 3.41
2873 5135 1.218763 CTGCTGAATCGCTGATGGAG 58.781 55.000 0.00 0.00 0.00 3.86
2874 5136 0.538584 TGCTGAATCGCTGATGGAGT 59.461 50.000 0.00 0.00 0.00 3.85
2875 5137 0.935898 GCTGAATCGCTGATGGAGTG 59.064 55.000 0.00 0.00 0.00 3.51
2876 5138 1.579698 CTGAATCGCTGATGGAGTGG 58.420 55.000 0.00 0.00 32.52 4.00
2877 5139 0.178767 TGAATCGCTGATGGAGTGGG 59.821 55.000 0.00 0.00 32.52 4.61
2878 5140 1.153086 AATCGCTGATGGAGTGGGC 60.153 57.895 0.00 0.00 32.52 5.36
2879 5141 2.930385 AATCGCTGATGGAGTGGGCG 62.930 60.000 0.00 0.00 45.93 6.13
2880 5142 4.457496 CGCTGATGGAGTGGGCGT 62.457 66.667 0.00 0.00 40.78 5.68
2881 5143 2.900273 GCTGATGGAGTGGGCGTA 59.100 61.111 0.00 0.00 0.00 4.42
2882 5144 1.227380 GCTGATGGAGTGGGCGTAG 60.227 63.158 0.00 0.00 0.00 3.51
2883 5145 1.676678 GCTGATGGAGTGGGCGTAGA 61.677 60.000 0.00 0.00 0.00 2.59
2884 5146 0.824109 CTGATGGAGTGGGCGTAGAA 59.176 55.000 0.00 0.00 0.00 2.10
2885 5147 0.535335 TGATGGAGTGGGCGTAGAAC 59.465 55.000 0.00 0.00 0.00 3.01
2886 5148 0.179081 GATGGAGTGGGCGTAGAACC 60.179 60.000 0.00 0.00 0.00 3.62
2887 5149 0.617820 ATGGAGTGGGCGTAGAACCT 60.618 55.000 0.00 0.00 0.00 3.50
2888 5150 1.218316 GGAGTGGGCGTAGAACCTG 59.782 63.158 0.00 0.00 0.00 4.00
2889 5151 1.255667 GGAGTGGGCGTAGAACCTGA 61.256 60.000 0.00 0.00 0.00 3.86
2890 5152 0.606604 GAGTGGGCGTAGAACCTGAA 59.393 55.000 0.00 0.00 0.00 3.02
2891 5153 1.001633 GAGTGGGCGTAGAACCTGAAA 59.998 52.381 0.00 0.00 0.00 2.69
2892 5154 1.418637 AGTGGGCGTAGAACCTGAAAA 59.581 47.619 0.00 0.00 0.00 2.29
2893 5155 2.039879 AGTGGGCGTAGAACCTGAAAAT 59.960 45.455 0.00 0.00 0.00 1.82
2894 5156 2.418976 GTGGGCGTAGAACCTGAAAATC 59.581 50.000 0.00 0.00 0.00 2.17
2895 5157 2.304761 TGGGCGTAGAACCTGAAAATCT 59.695 45.455 0.00 0.00 0.00 2.40
2896 5158 2.678336 GGGCGTAGAACCTGAAAATCTG 59.322 50.000 0.00 0.00 0.00 2.90
2897 5159 3.335579 GGCGTAGAACCTGAAAATCTGT 58.664 45.455 0.00 0.00 0.00 3.41
2899 5161 4.933400 GGCGTAGAACCTGAAAATCTGTAA 59.067 41.667 0.00 0.00 0.00 2.41
2904 5166 7.119262 CGTAGAACCTGAAAATCTGTAACCATT 59.881 37.037 0.00 0.00 0.00 3.16
2906 5168 5.880054 ACCTGAAAATCTGTAACCATTCG 57.120 39.130 0.00 0.00 0.00 3.34
2908 5170 4.396166 CCTGAAAATCTGTAACCATTCGCT 59.604 41.667 0.00 0.00 0.00 4.93
2911 5173 3.627395 AATCTGTAACCATTCGCTCCA 57.373 42.857 0.00 0.00 0.00 3.86
2914 5176 1.331756 CTGTAACCATTCGCTCCATGC 59.668 52.381 0.00 0.00 38.57 4.06
2938 5200 5.180117 CGTAGCTTGGCATATTTATTCTGCT 59.820 40.000 0.00 0.00 36.18 4.24
2939 5201 6.293626 CGTAGCTTGGCATATTTATTCTGCTT 60.294 38.462 0.00 0.00 36.18 3.91
2940 5202 6.081872 AGCTTGGCATATTTATTCTGCTTC 57.918 37.500 0.00 0.00 36.18 3.86
2941 5203 5.832060 AGCTTGGCATATTTATTCTGCTTCT 59.168 36.000 0.00 0.00 36.18 2.85
3042 5304 1.821136 GCCAAGATTGCAGTAAAGGCT 59.179 47.619 12.53 0.00 37.89 4.58
3047 5309 5.357878 CCAAGATTGCAGTAAAGGCTTCATA 59.642 40.000 0.00 0.00 0.00 2.15
3048 5310 6.459298 CCAAGATTGCAGTAAAGGCTTCATAG 60.459 42.308 0.00 0.00 0.00 2.23
3049 5311 5.994250 AGATTGCAGTAAAGGCTTCATAGA 58.006 37.500 0.00 0.00 0.00 1.98
3050 5312 6.599445 AGATTGCAGTAAAGGCTTCATAGAT 58.401 36.000 0.00 0.00 0.00 1.98
3051 5313 6.709846 AGATTGCAGTAAAGGCTTCATAGATC 59.290 38.462 0.00 0.00 0.00 2.75
3052 5314 5.357742 TGCAGTAAAGGCTTCATAGATCA 57.642 39.130 0.00 0.00 0.00 2.92
3053 5315 5.363101 TGCAGTAAAGGCTTCATAGATCAG 58.637 41.667 0.00 0.00 0.00 2.90
3054 5316 4.213059 GCAGTAAAGGCTTCATAGATCAGC 59.787 45.833 0.00 0.00 0.00 4.26
3060 5322 3.959535 GCTTCATAGATCAGCCTAGCT 57.040 47.619 0.00 0.00 40.77 3.32
3061 5323 4.270245 GCTTCATAGATCAGCCTAGCTT 57.730 45.455 0.00 0.00 36.40 3.74
3062 5324 4.640364 GCTTCATAGATCAGCCTAGCTTT 58.360 43.478 0.00 0.00 36.40 3.51
3063 5325 4.451774 GCTTCATAGATCAGCCTAGCTTTG 59.548 45.833 0.00 0.00 36.40 2.77
3064 5326 5.609423 CTTCATAGATCAGCCTAGCTTTGT 58.391 41.667 0.00 0.00 36.40 2.83
3065 5327 5.620738 TCATAGATCAGCCTAGCTTTGTT 57.379 39.130 0.00 0.00 36.40 2.83
3066 5328 5.363101 TCATAGATCAGCCTAGCTTTGTTG 58.637 41.667 0.00 0.00 36.40 3.33
3067 5329 2.996631 AGATCAGCCTAGCTTTGTTGG 58.003 47.619 0.00 0.00 36.40 3.77
3068 5330 2.019984 GATCAGCCTAGCTTTGTTGGG 58.980 52.381 0.00 0.00 36.40 4.12
3069 5331 0.609131 TCAGCCTAGCTTTGTTGGGC 60.609 55.000 0.00 0.94 36.40 5.36
3070 5332 1.675641 AGCCTAGCTTTGTTGGGCG 60.676 57.895 0.00 0.00 46.44 6.13
3071 5333 1.971695 GCCTAGCTTTGTTGGGCGT 60.972 57.895 0.00 0.00 33.30 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.192317 ACCTCAAAAGCTTGGATCGATAC 58.808 43.478 0.00 0.00 33.01 2.24
60 61 0.399091 TATGAGACTGGAGGCCCTGG 60.399 60.000 0.00 0.00 35.88 4.45
63 64 3.481453 GATTTTATGAGACTGGAGGCCC 58.519 50.000 0.00 0.00 0.00 5.80
72 73 4.819088 GCTTGGAGAGGGATTTTATGAGAC 59.181 45.833 0.00 0.00 0.00 3.36
76 77 5.653769 TCTTTGCTTGGAGAGGGATTTTATG 59.346 40.000 0.00 0.00 0.00 1.90
91 93 3.507233 TCAGGTGCCTTATTCTTTGCTTG 59.493 43.478 0.00 0.00 0.00 4.01
171 173 2.037121 TCTTCAACGAGAATGGACAGCA 59.963 45.455 0.00 0.00 35.25 4.41
185 187 8.812147 TCATGTTACCGTATATCATCTTCAAC 57.188 34.615 0.00 0.00 0.00 3.18
196 198 5.761234 GCCCAGAAAATCATGTTACCGTATA 59.239 40.000 0.00 0.00 0.00 1.47
214 216 0.324943 GCTAAACAGACAGGCCCAGA 59.675 55.000 0.00 0.00 0.00 3.86
263 268 8.455903 TTCTCTGCATAATTCCAATAAAGAGG 57.544 34.615 0.00 0.00 31.63 3.69
264 269 9.334947 TCTTCTCTGCATAATTCCAATAAAGAG 57.665 33.333 0.00 0.00 0.00 2.85
265 270 9.334947 CTCTTCTCTGCATAATTCCAATAAAGA 57.665 33.333 0.00 0.00 0.00 2.52
266 271 9.118300 ACTCTTCTCTGCATAATTCCAATAAAG 57.882 33.333 0.00 0.00 0.00 1.85
322 327 2.354259 GCCTTCACACAGATCTCCAAG 58.646 52.381 0.00 0.00 0.00 3.61
342 347 2.022195 CTGAGATTGTGCCATTGAGGG 58.978 52.381 0.00 0.00 38.09 4.30
486 501 0.983467 TAGATGGCAGTGCAGAACCA 59.017 50.000 18.61 5.38 36.43 3.67
487 502 2.012673 CTTAGATGGCAGTGCAGAACC 58.987 52.381 18.61 0.00 0.00 3.62
599 620 3.941483 CTCTGCGACCATGGTTTAGAAAT 59.059 43.478 20.85 0.00 0.00 2.17
619 640 2.287248 GCTTGTCAGGTGAAAACAGCTC 60.287 50.000 0.00 0.00 0.00 4.09
639 660 3.505836 GCAAAGAAAAGACATAGCTGGC 58.494 45.455 0.00 0.00 0.00 4.85
643 664 2.169179 CGCGCAAAGAAAAGACATAGC 58.831 47.619 8.75 0.00 0.00 2.97
652 673 1.135803 GGATGTAAGCGCGCAAAGAAA 60.136 47.619 35.10 13.80 0.00 2.52
661 682 3.438297 TCTCTACAAGGATGTAAGCGC 57.562 47.619 0.00 0.00 41.36 5.92
709 730 3.181480 ACACATGGAAAAGTGAAAACGGG 60.181 43.478 0.00 0.00 39.03 5.28
718 739 4.339247 CAGAACCTGAACACATGGAAAAGT 59.661 41.667 0.00 0.00 32.44 2.66
778 799 6.205784 CAAAATGGTTTGTCGTACAATGAGT 58.794 36.000 0.00 0.00 38.00 3.41
844 869 2.554032 GCCACATCTGCATATGGTTACC 59.446 50.000 15.67 0.00 34.50 2.85
863 892 4.700213 TGTTTCTTAACAGGAATAGCTGCC 59.300 41.667 0.00 0.00 39.29 4.85
974 1003 2.315925 TCGTCCTCAATTCCTCATGC 57.684 50.000 0.00 0.00 0.00 4.06
976 1005 3.708631 AGTCATCGTCCTCAATTCCTCAT 59.291 43.478 0.00 0.00 0.00 2.90
977 1006 3.099905 AGTCATCGTCCTCAATTCCTCA 58.900 45.455 0.00 0.00 0.00 3.86
979 1008 5.363868 TCATAAGTCATCGTCCTCAATTCCT 59.636 40.000 0.00 0.00 0.00 3.36
980 1009 5.601662 TCATAAGTCATCGTCCTCAATTCC 58.398 41.667 0.00 0.00 0.00 3.01
981 1010 7.721286 AATCATAAGTCATCGTCCTCAATTC 57.279 36.000 0.00 0.00 0.00 2.17
982 1011 8.424918 ACTAATCATAAGTCATCGTCCTCAATT 58.575 33.333 0.00 0.00 0.00 2.32
983 1012 7.869937 CACTAATCATAAGTCATCGTCCTCAAT 59.130 37.037 0.00 0.00 0.00 2.57
984 1013 7.203218 CACTAATCATAAGTCATCGTCCTCAA 58.797 38.462 0.00 0.00 0.00 3.02
988 1017 5.533482 AGCACTAATCATAAGTCATCGTCC 58.467 41.667 0.00 0.00 0.00 4.79
1077 1327 3.754323 CGGGTATGTGTGTTTTGGTATGT 59.246 43.478 0.00 0.00 0.00 2.29
1078 1328 3.426963 GCGGGTATGTGTGTTTTGGTATG 60.427 47.826 0.00 0.00 0.00 2.39
1079 1329 2.750712 GCGGGTATGTGTGTTTTGGTAT 59.249 45.455 0.00 0.00 0.00 2.73
1082 1332 1.243902 AGCGGGTATGTGTGTTTTGG 58.756 50.000 0.00 0.00 0.00 3.28
1083 1333 4.491234 TTAAGCGGGTATGTGTGTTTTG 57.509 40.909 0.00 0.00 0.00 2.44
1084 1334 4.581409 ACTTTAAGCGGGTATGTGTGTTTT 59.419 37.500 0.00 0.00 0.00 2.43
1086 1336 3.746940 ACTTTAAGCGGGTATGTGTGTT 58.253 40.909 0.00 0.00 0.00 3.32
1087 1337 3.412237 ACTTTAAGCGGGTATGTGTGT 57.588 42.857 0.00 0.00 0.00 3.72
1088 1338 3.749088 TGAACTTTAAGCGGGTATGTGTG 59.251 43.478 0.00 0.00 0.00 3.82
1089 1339 4.010667 TGAACTTTAAGCGGGTATGTGT 57.989 40.909 0.00 0.00 0.00 3.72
1090 1340 5.365403 TTTGAACTTTAAGCGGGTATGTG 57.635 39.130 0.00 0.00 0.00 3.21
1091 1341 6.584185 ATTTTGAACTTTAAGCGGGTATGT 57.416 33.333 0.00 0.00 0.00 2.29
1092 1342 8.973835 TTAATTTTGAACTTTAAGCGGGTATG 57.026 30.769 0.00 0.00 0.00 2.39
1094 2711 7.447853 TCCTTAATTTTGAACTTTAAGCGGGTA 59.552 33.333 0.00 0.00 33.56 3.69
1103 2720 9.314133 AGCTAAGGATCCTTAATTTTGAACTTT 57.686 29.630 29.69 6.84 37.97 2.66
1106 2723 7.708051 GGAGCTAAGGATCCTTAATTTTGAAC 58.292 38.462 29.69 16.18 44.03 3.18
1107 2724 7.881775 GGAGCTAAGGATCCTTAATTTTGAA 57.118 36.000 29.69 11.62 44.03 2.69
1168 2785 4.734398 ATGTTGGTCATGTGTGTTTTGT 57.266 36.364 0.00 0.00 35.19 2.83
1209 2826 5.627780 GTCAACGAAATTTCTAATGCGGTTT 59.372 36.000 15.92 0.00 0.00 3.27
1257 3345 3.591079 TGCCTGGCAATGGGATATGTATA 59.409 43.478 21.08 0.00 34.76 1.47
1318 3406 2.576191 AGGAGGCAGTGCTTGGTATAAA 59.424 45.455 16.11 0.00 0.00 1.40
1406 3494 2.159114 TGTTTGCTGAAAAGAGTTGGCC 60.159 45.455 0.00 0.00 0.00 5.36
1450 3547 1.318158 GCAGCCAAGATGACAAGGGG 61.318 60.000 0.00 0.00 0.00 4.79
1550 3647 5.030147 TGTATGAAGTACCTGGTGGATTCT 58.970 41.667 10.23 4.30 37.04 2.40
1575 3672 3.628487 TGGTGTTCCGTTAACTGGAAAAG 59.372 43.478 24.00 1.52 46.53 2.27
1589 3686 6.285990 TCAACTCTTTAAGTAGTGGTGTTCC 58.714 40.000 0.00 0.00 37.17 3.62
1630 3727 8.781196 ACATCTATAGCTTTCTGTGCAATATTG 58.219 33.333 11.27 11.27 0.00 1.90
1632 3729 8.781196 CAACATCTATAGCTTTCTGTGCAATAT 58.219 33.333 0.00 0.00 0.00 1.28
1635 3732 5.355071 CCAACATCTATAGCTTTCTGTGCAA 59.645 40.000 0.00 0.00 0.00 4.08
1644 3741 9.247861 AGAACAATTTTCCAACATCTATAGCTT 57.752 29.630 0.00 0.00 0.00 3.74
1675 3776 4.587262 AGGTGAGCCGTGAACATATATACA 59.413 41.667 0.00 0.00 40.50 2.29
1676 3777 4.923871 CAGGTGAGCCGTGAACATATATAC 59.076 45.833 0.00 0.00 40.50 1.47
1677 3778 4.021456 CCAGGTGAGCCGTGAACATATATA 60.021 45.833 0.00 0.00 40.50 0.86
1726 3829 0.383231 CATCGCCCATTCTTGAAGGC 59.617 55.000 0.00 4.22 42.18 4.35
1731 3849 1.406539 CCCTTTCATCGCCCATTCTTG 59.593 52.381 0.00 0.00 0.00 3.02
1732 3850 1.005924 ACCCTTTCATCGCCCATTCTT 59.994 47.619 0.00 0.00 0.00 2.52
1768 3906 0.030369 AACGCAGAAACGAGACGAGT 59.970 50.000 0.00 0.00 36.70 4.18
1810 3950 0.109412 GCCTGACAGAACATTGCAGC 60.109 55.000 3.32 0.00 0.00 5.25
1840 3980 9.985318 CTGTAAAAGAGATTTGATTCATGAGAC 57.015 33.333 0.00 0.00 32.27 3.36
1880 4022 4.712122 ACCAGTTTGTTTCGTCAACATT 57.288 36.364 4.18 0.00 45.17 2.71
1892 4034 3.869065 TCTCTTGTTCGAACCAGTTTGT 58.131 40.909 24.78 0.00 0.00 2.83
1912 4054 2.673368 GGAACCGACACTGACATGATTC 59.327 50.000 0.00 0.00 0.00 2.52
1914 4056 1.623311 TGGAACCGACACTGACATGAT 59.377 47.619 0.00 0.00 0.00 2.45
1919 4061 0.320771 AGCATGGAACCGACACTGAC 60.321 55.000 0.00 0.00 0.00 3.51
2068 4210 0.250467 TGCCTTCAGCTTGGACTCAC 60.250 55.000 1.68 0.00 44.23 3.51
2104 4252 0.239347 ATGCTTCAAGTTGTGCTCGC 59.761 50.000 18.72 9.88 0.00 5.03
2228 4381 2.505819 AGGTCATTTCCCTCAGCGTTAT 59.494 45.455 0.00 0.00 0.00 1.89
2238 4391 4.335416 TCACAAGAATCAGGTCATTTCCC 58.665 43.478 0.00 0.00 0.00 3.97
2239 4392 5.474876 ACTTCACAAGAATCAGGTCATTTCC 59.525 40.000 0.00 0.00 32.31 3.13
2247 4402 4.518211 AGCTGAAACTTCACAAGAATCAGG 59.482 41.667 17.06 6.64 41.06 3.86
2249 4404 4.883585 ACAGCTGAAACTTCACAAGAATCA 59.116 37.500 23.35 0.00 32.31 2.57
2271 4426 2.464157 ACAACAGAGAGCCTGCTTAC 57.536 50.000 0.00 0.00 46.81 2.34
2285 4441 5.943416 TCTTGGAGAAGTTTCAGAAACAACA 59.057 36.000 24.85 13.90 43.79 3.33
2302 4458 4.202202 ACTGAGTGAACAGAGTTCTTGGAG 60.202 45.833 10.79 5.22 40.63 3.86
2336 4492 8.997621 TGTGAGGTTATCATTTACTAGTTGTC 57.002 34.615 0.00 0.00 40.92 3.18
2337 4493 9.959721 AATGTGAGGTTATCATTTACTAGTTGT 57.040 29.630 0.00 0.00 40.92 3.32
2340 4496 9.959721 ACAAATGTGAGGTTATCATTTACTAGT 57.040 29.630 0.00 0.00 40.92 2.57
2373 4535 8.800332 ACATGTCTAAAAAGATGCAGAAAATCT 58.200 29.630 0.00 0.00 35.89 2.40
2375 4537 9.199982 CAACATGTCTAAAAAGATGCAGAAAAT 57.800 29.630 0.00 0.00 0.00 1.82
2378 4540 6.016024 AGCAACATGTCTAAAAAGATGCAGAA 60.016 34.615 13.96 0.00 33.89 3.02
2393 4555 7.461416 GCGTGTTCAAATATAAAGCAACATGTC 60.461 37.037 0.00 0.00 34.59 3.06
2395 4557 6.527722 AGCGTGTTCAAATATAAAGCAACATG 59.472 34.615 0.00 0.00 35.01 3.21
2398 4560 8.523464 CAATAGCGTGTTCAAATATAAAGCAAC 58.477 33.333 0.00 0.00 0.00 4.17
2407 4569 8.705048 TGTGTATACAATAGCGTGTTCAAATA 57.295 30.769 7.25 0.00 32.88 1.40
2412 4574 8.889849 AATTTTGTGTATACAATAGCGTGTTC 57.110 30.769 7.25 0.00 45.56 3.18
2435 4597 8.709308 ACAGCAGATAAGAAGTACTGGATAAAT 58.291 33.333 0.00 0.00 0.00 1.40
2442 4604 9.803315 TTTGTATACAGCAGATAAGAAGTACTG 57.197 33.333 5.56 0.00 0.00 2.74
2463 4664 9.632807 GACATTGGCATAGTATTTTGTTTTGTA 57.367 29.630 0.00 0.00 0.00 2.41
2464 4665 8.147058 TGACATTGGCATAGTATTTTGTTTTGT 58.853 29.630 0.00 0.00 0.00 2.83
2465 4666 8.531622 TGACATTGGCATAGTATTTTGTTTTG 57.468 30.769 0.00 0.00 0.00 2.44
2466 4667 9.723601 AATGACATTGGCATAGTATTTTGTTTT 57.276 25.926 5.18 0.00 0.00 2.43
2470 4671 9.976255 CAAAAATGACATTGGCATAGTATTTTG 57.024 29.630 18.64 18.64 30.26 2.44
2482 4683 4.634199 AGGTCAAGCAAAAATGACATTGG 58.366 39.130 0.34 0.00 46.07 3.16
2490 4712 9.125026 AGATATTTCGATAGGTCAAGCAAAAAT 57.875 29.630 0.00 0.00 0.00 1.82
2513 4735 7.228706 ACAATTCCACTACAGAAAACGAAAGAT 59.771 33.333 0.00 0.00 0.00 2.40
2515 4737 6.725246 ACAATTCCACTACAGAAAACGAAAG 58.275 36.000 0.00 0.00 0.00 2.62
2516 4738 6.687081 ACAATTCCACTACAGAAAACGAAA 57.313 33.333 0.00 0.00 0.00 3.46
2518 4740 6.687081 AAACAATTCCACTACAGAAAACGA 57.313 33.333 0.00 0.00 0.00 3.85
2519 4741 7.700656 AGAAAAACAATTCCACTACAGAAAACG 59.299 33.333 0.00 0.00 0.00 3.60
2520 4742 8.807581 CAGAAAAACAATTCCACTACAGAAAAC 58.192 33.333 0.00 0.00 0.00 2.43
2525 4747 7.264373 AGTCAGAAAAACAATTCCACTACAG 57.736 36.000 0.00 0.00 0.00 2.74
2529 4751 7.227512 CAGAGTAGTCAGAAAAACAATTCCACT 59.772 37.037 0.00 0.00 31.41 4.00
2530 4752 7.012421 ACAGAGTAGTCAGAAAAACAATTCCAC 59.988 37.037 0.00 0.00 0.00 4.02
2538 4760 6.903883 TGACAACAGAGTAGTCAGAAAAAC 57.096 37.500 0.00 0.00 37.36 2.43
2544 4766 3.982475 TGCTTGACAACAGAGTAGTCAG 58.018 45.455 0.00 0.00 42.54 3.51
2553 4775 3.047796 GCATCAACTTGCTTGACAACAG 58.952 45.455 0.00 0.00 41.87 3.16
2588 4845 8.160106 AGAGAGGTTTACAGATTCTTTTGTGAT 58.840 33.333 0.00 0.00 0.00 3.06
2589 4846 7.509546 AGAGAGGTTTACAGATTCTTTTGTGA 58.490 34.615 0.00 0.00 0.00 3.58
2590 4847 7.442364 TGAGAGAGGTTTACAGATTCTTTTGTG 59.558 37.037 0.00 0.00 0.00 3.33
2597 4854 7.657761 TCAAACTTGAGAGAGGTTTACAGATTC 59.342 37.037 0.00 0.00 32.80 2.52
2619 4881 6.480651 TGCTTGACGTTTCAGTATAACTCAAA 59.519 34.615 0.00 0.00 31.71 2.69
2627 4889 4.314961 TGACATGCTTGACGTTTCAGTAT 58.685 39.130 6.60 0.00 31.71 2.12
2636 4898 0.518636 CCTGGTTGACATGCTTGACG 59.481 55.000 6.60 0.00 0.00 4.35
2637 4899 0.883833 CCCTGGTTGACATGCTTGAC 59.116 55.000 6.60 0.53 0.00 3.18
2638 4900 0.251297 CCCCTGGTTGACATGCTTGA 60.251 55.000 6.60 0.00 0.00 3.02
2639 4901 1.880819 GCCCCTGGTTGACATGCTTG 61.881 60.000 0.00 0.00 0.00 4.01
2640 4902 1.607467 GCCCCTGGTTGACATGCTT 60.607 57.895 0.00 0.00 0.00 3.91
2641 4903 2.036256 GCCCCTGGTTGACATGCT 59.964 61.111 0.00 0.00 0.00 3.79
2642 4904 3.070576 GGCCCCTGGTTGACATGC 61.071 66.667 0.00 0.00 0.00 4.06
2643 4905 0.258484 TATGGCCCCTGGTTGACATG 59.742 55.000 11.05 0.00 0.00 3.21
2644 4906 1.234806 ATATGGCCCCTGGTTGACAT 58.765 50.000 0.00 6.97 0.00 3.06
2645 4907 1.900254 TATATGGCCCCTGGTTGACA 58.100 50.000 0.00 0.00 0.00 3.58
2646 4908 3.306472 TTTATATGGCCCCTGGTTGAC 57.694 47.619 0.00 0.00 0.00 3.18
2647 4909 4.551215 AATTTATATGGCCCCTGGTTGA 57.449 40.909 0.00 0.00 0.00 3.18
2648 4910 8.429237 TTTATAATTTATATGGCCCCTGGTTG 57.571 34.615 0.00 0.00 0.00 3.77
2666 4928 9.947433 TGTCCGGACCGAAATTATATTTATAAT 57.053 29.630 31.19 0.00 39.79 1.28
2667 4929 9.775854 TTGTCCGGACCGAAATTATATTTATAA 57.224 29.630 31.19 9.86 33.16 0.98
2668 4930 9.426837 CTTGTCCGGACCGAAATTATATTTATA 57.573 33.333 31.19 3.55 0.00 0.98
2669 4931 7.935210 ACTTGTCCGGACCGAAATTATATTTAT 59.065 33.333 31.19 0.00 0.00 1.40
2670 4932 7.274447 ACTTGTCCGGACCGAAATTATATTTA 58.726 34.615 31.19 4.68 0.00 1.40
2671 4933 6.117488 ACTTGTCCGGACCGAAATTATATTT 58.883 36.000 31.19 0.37 0.00 1.40
2672 4934 5.677567 ACTTGTCCGGACCGAAATTATATT 58.322 37.500 31.19 1.07 0.00 1.28
2673 4935 5.286267 ACTTGTCCGGACCGAAATTATAT 57.714 39.130 31.19 2.69 0.00 0.86
2674 4936 4.741321 ACTTGTCCGGACCGAAATTATA 57.259 40.909 31.19 6.76 0.00 0.98
2675 4937 3.622166 ACTTGTCCGGACCGAAATTAT 57.378 42.857 31.19 5.80 0.00 1.28
2676 4938 3.405823 AACTTGTCCGGACCGAAATTA 57.594 42.857 31.19 8.39 0.00 1.40
2677 4939 2.265589 AACTTGTCCGGACCGAAATT 57.734 45.000 31.19 13.51 0.00 1.82
2678 4940 1.877443 CAAACTTGTCCGGACCGAAAT 59.123 47.619 31.19 12.48 0.00 2.17
2679 4941 1.134461 TCAAACTTGTCCGGACCGAAA 60.134 47.619 31.19 17.92 0.00 3.46
2680 4942 0.464870 TCAAACTTGTCCGGACCGAA 59.535 50.000 31.19 18.64 0.00 4.30
2681 4943 0.682852 ATCAAACTTGTCCGGACCGA 59.317 50.000 31.19 18.65 0.00 4.69
2682 4944 2.373540 TATCAAACTTGTCCGGACCG 57.626 50.000 31.19 23.28 0.00 4.79
2683 4945 3.007635 CCTTATCAAACTTGTCCGGACC 58.992 50.000 31.19 14.15 0.00 4.46
2684 4946 3.934068 TCCTTATCAAACTTGTCCGGAC 58.066 45.455 28.17 28.17 0.00 4.79
2685 4947 4.627284 TTCCTTATCAAACTTGTCCGGA 57.373 40.909 0.00 0.00 0.00 5.14
2686 4948 5.897377 AATTCCTTATCAAACTTGTCCGG 57.103 39.130 0.00 0.00 0.00 5.14
2711 4973 8.735315 TGACGTTCATAAATTGTGACCATATTT 58.265 29.630 0.00 0.00 0.00 1.40
2712 4974 8.275015 TGACGTTCATAAATTGTGACCATATT 57.725 30.769 0.00 0.00 0.00 1.28
2713 4975 7.768582 TCTGACGTTCATAAATTGTGACCATAT 59.231 33.333 0.00 0.00 0.00 1.78
2714 4976 7.100409 TCTGACGTTCATAAATTGTGACCATA 58.900 34.615 0.00 0.00 0.00 2.74
2715 4977 5.937540 TCTGACGTTCATAAATTGTGACCAT 59.062 36.000 0.00 0.00 0.00 3.55
2716 4978 5.301555 TCTGACGTTCATAAATTGTGACCA 58.698 37.500 0.00 0.00 0.00 4.02
2717 4979 5.671329 GCTCTGACGTTCATAAATTGTGACC 60.671 44.000 0.00 0.00 0.00 4.02
2718 4980 5.107104 TGCTCTGACGTTCATAAATTGTGAC 60.107 40.000 0.00 0.00 0.00 3.67
2719 4981 4.994217 TGCTCTGACGTTCATAAATTGTGA 59.006 37.500 0.00 0.00 0.00 3.58
2720 4982 5.281693 TGCTCTGACGTTCATAAATTGTG 57.718 39.130 0.00 0.00 0.00 3.33
2721 4983 5.643348 TCATGCTCTGACGTTCATAAATTGT 59.357 36.000 0.00 0.00 0.00 2.71
2722 4984 5.961843 GTCATGCTCTGACGTTCATAAATTG 59.038 40.000 4.58 0.00 44.58 2.32
2723 4985 6.111768 GTCATGCTCTGACGTTCATAAATT 57.888 37.500 4.58 0.00 44.58 1.82
2724 4986 5.725110 GTCATGCTCTGACGTTCATAAAT 57.275 39.130 4.58 0.00 44.58 1.40
2735 4997 5.361857 TGTGATCATCTTAGTCATGCTCTGA 59.638 40.000 0.00 0.00 0.00 3.27
2736 4998 5.598769 TGTGATCATCTTAGTCATGCTCTG 58.401 41.667 0.00 0.00 0.00 3.35
2737 4999 5.866159 TGTGATCATCTTAGTCATGCTCT 57.134 39.130 0.00 0.00 0.00 4.09
2738 5000 7.493743 AATTGTGATCATCTTAGTCATGCTC 57.506 36.000 0.00 0.00 0.00 4.26
2739 5001 8.209584 ACTAATTGTGATCATCTTAGTCATGCT 58.790 33.333 15.97 0.00 32.21 3.79
2740 5002 8.375608 ACTAATTGTGATCATCTTAGTCATGC 57.624 34.615 15.97 0.00 32.21 4.06
2789 5051 2.657143 AGTACCACCCGCAAAGAAAAA 58.343 42.857 0.00 0.00 0.00 1.94
2790 5052 2.351706 AGTACCACCCGCAAAGAAAA 57.648 45.000 0.00 0.00 0.00 2.29
2791 5053 3.488778 TTAGTACCACCCGCAAAGAAA 57.511 42.857 0.00 0.00 0.00 2.52
2792 5054 3.262405 AGATTAGTACCACCCGCAAAGAA 59.738 43.478 0.00 0.00 0.00 2.52
2793 5055 2.835764 AGATTAGTACCACCCGCAAAGA 59.164 45.455 0.00 0.00 0.00 2.52
2794 5056 3.261981 AGATTAGTACCACCCGCAAAG 57.738 47.619 0.00 0.00 0.00 2.77
2795 5057 4.822685 TTAGATTAGTACCACCCGCAAA 57.177 40.909 0.00 0.00 0.00 3.68
2796 5058 5.599656 AGTATTAGATTAGTACCACCCGCAA 59.400 40.000 0.00 0.00 0.00 4.85
2797 5059 5.142639 AGTATTAGATTAGTACCACCCGCA 58.857 41.667 0.00 0.00 0.00 5.69
2798 5060 5.718724 AGTATTAGATTAGTACCACCCGC 57.281 43.478 0.00 0.00 0.00 6.13
2799 5061 7.281040 TGAAGTATTAGATTAGTACCACCCG 57.719 40.000 0.00 0.00 0.00 5.28
2800 5062 8.312564 GGATGAAGTATTAGATTAGTACCACCC 58.687 40.741 0.00 0.00 0.00 4.61
2801 5063 9.091220 AGGATGAAGTATTAGATTAGTACCACC 57.909 37.037 0.00 0.00 0.00 4.61
2815 5077 9.386122 ACCTATGTCATTAGAGGATGAAGTATT 57.614 33.333 7.07 0.00 37.75 1.89
2816 5078 8.964533 ACCTATGTCATTAGAGGATGAAGTAT 57.035 34.615 7.07 0.00 37.75 2.12
2817 5079 9.521841 CTACCTATGTCATTAGAGGATGAAGTA 57.478 37.037 7.07 0.00 37.75 2.24
2818 5080 7.453126 CCTACCTATGTCATTAGAGGATGAAGT 59.547 40.741 7.07 0.00 37.75 3.01
2819 5081 7.578571 GCCTACCTATGTCATTAGAGGATGAAG 60.579 44.444 7.07 0.64 37.75 3.02
2820 5082 6.211584 GCCTACCTATGTCATTAGAGGATGAA 59.788 42.308 7.07 0.00 37.75 2.57
2821 5083 5.717178 GCCTACCTATGTCATTAGAGGATGA 59.283 44.000 7.07 0.00 33.31 2.92
2822 5084 5.719085 AGCCTACCTATGTCATTAGAGGATG 59.281 44.000 7.07 0.57 33.31 3.51
2823 5085 5.719085 CAGCCTACCTATGTCATTAGAGGAT 59.281 44.000 7.07 0.00 33.31 3.24
2824 5086 5.080337 CAGCCTACCTATGTCATTAGAGGA 58.920 45.833 7.07 0.00 33.31 3.71
2825 5087 5.080337 TCAGCCTACCTATGTCATTAGAGG 58.920 45.833 0.00 0.00 35.19 3.69
2826 5088 6.849085 ATCAGCCTACCTATGTCATTAGAG 57.151 41.667 0.00 0.00 0.00 2.43
2827 5089 7.094334 CGTTATCAGCCTACCTATGTCATTAGA 60.094 40.741 0.00 0.00 0.00 2.10
2828 5090 7.030165 CGTTATCAGCCTACCTATGTCATTAG 58.970 42.308 0.00 0.00 0.00 1.73
2829 5091 6.571731 GCGTTATCAGCCTACCTATGTCATTA 60.572 42.308 0.00 0.00 0.00 1.90
2830 5092 5.784177 CGTTATCAGCCTACCTATGTCATT 58.216 41.667 0.00 0.00 0.00 2.57
2831 5093 4.322049 GCGTTATCAGCCTACCTATGTCAT 60.322 45.833 0.00 0.00 0.00 3.06
2832 5094 3.005472 GCGTTATCAGCCTACCTATGTCA 59.995 47.826 0.00 0.00 0.00 3.58
2833 5095 3.256136 AGCGTTATCAGCCTACCTATGTC 59.744 47.826 0.00 0.00 34.64 3.06
2834 5096 3.005897 CAGCGTTATCAGCCTACCTATGT 59.994 47.826 0.00 0.00 34.64 2.29
2835 5097 3.579709 CAGCGTTATCAGCCTACCTATG 58.420 50.000 0.00 0.00 34.64 2.23
2836 5098 2.028930 GCAGCGTTATCAGCCTACCTAT 60.029 50.000 0.00 0.00 34.64 2.57
2837 5099 1.340248 GCAGCGTTATCAGCCTACCTA 59.660 52.381 0.00 0.00 34.64 3.08
2838 5100 0.105039 GCAGCGTTATCAGCCTACCT 59.895 55.000 0.00 0.00 34.64 3.08
2839 5101 0.105039 AGCAGCGTTATCAGCCTACC 59.895 55.000 0.00 0.00 34.64 3.18
2840 5102 1.202417 TCAGCAGCGTTATCAGCCTAC 60.202 52.381 0.00 0.00 34.64 3.18
2841 5103 1.111277 TCAGCAGCGTTATCAGCCTA 58.889 50.000 0.00 0.00 34.64 3.93
2842 5104 0.250234 TTCAGCAGCGTTATCAGCCT 59.750 50.000 0.00 0.00 34.64 4.58
2843 5105 1.262683 GATTCAGCAGCGTTATCAGCC 59.737 52.381 0.00 0.00 34.64 4.85
2844 5106 1.070975 CGATTCAGCAGCGTTATCAGC 60.071 52.381 0.00 0.00 0.00 4.26
2845 5107 1.070975 GCGATTCAGCAGCGTTATCAG 60.071 52.381 0.00 0.00 37.05 2.90
2846 5108 0.930310 GCGATTCAGCAGCGTTATCA 59.070 50.000 0.00 0.00 37.05 2.15
2847 5109 1.070975 CAGCGATTCAGCAGCGTTATC 60.071 52.381 0.00 0.00 40.15 1.75
2848 5110 0.933097 CAGCGATTCAGCAGCGTTAT 59.067 50.000 0.00 0.00 40.15 1.89
2849 5111 0.108851 TCAGCGATTCAGCAGCGTTA 60.109 50.000 0.00 0.00 40.15 3.18
2850 5112 0.742281 ATCAGCGATTCAGCAGCGTT 60.742 50.000 0.00 0.00 40.15 4.84
2851 5113 1.153489 ATCAGCGATTCAGCAGCGT 60.153 52.632 0.00 0.00 40.15 5.07
2852 5114 1.275953 CATCAGCGATTCAGCAGCG 59.724 57.895 0.00 0.00 40.15 5.18
2853 5115 0.812811 TCCATCAGCGATTCAGCAGC 60.813 55.000 0.00 0.00 40.15 5.25
2854 5116 1.218763 CTCCATCAGCGATTCAGCAG 58.781 55.000 0.00 0.00 40.15 4.24
2855 5117 0.538584 ACTCCATCAGCGATTCAGCA 59.461 50.000 0.00 0.00 40.15 4.41
2856 5118 0.935898 CACTCCATCAGCGATTCAGC 59.064 55.000 0.00 0.00 37.41 4.26
2857 5119 1.579698 CCACTCCATCAGCGATTCAG 58.420 55.000 0.00 0.00 0.00 3.02
2858 5120 0.178767 CCCACTCCATCAGCGATTCA 59.821 55.000 0.00 0.00 0.00 2.57
2859 5121 1.162800 GCCCACTCCATCAGCGATTC 61.163 60.000 0.00 0.00 0.00 2.52
2860 5122 1.153086 GCCCACTCCATCAGCGATT 60.153 57.895 0.00 0.00 0.00 3.34
2861 5123 2.507944 GCCCACTCCATCAGCGAT 59.492 61.111 0.00 0.00 0.00 4.58
2864 5126 1.227380 CTACGCCCACTCCATCAGC 60.227 63.158 0.00 0.00 0.00 4.26
2865 5127 0.824109 TTCTACGCCCACTCCATCAG 59.176 55.000 0.00 0.00 0.00 2.90
2866 5128 0.535335 GTTCTACGCCCACTCCATCA 59.465 55.000 0.00 0.00 0.00 3.07
2867 5129 0.179081 GGTTCTACGCCCACTCCATC 60.179 60.000 0.00 0.00 0.00 3.51
2868 5130 0.617820 AGGTTCTACGCCCACTCCAT 60.618 55.000 0.00 0.00 0.00 3.41
2869 5131 1.229082 AGGTTCTACGCCCACTCCA 60.229 57.895 0.00 0.00 0.00 3.86
2870 5132 1.218316 CAGGTTCTACGCCCACTCC 59.782 63.158 0.00 0.00 0.00 3.85
2871 5133 0.606604 TTCAGGTTCTACGCCCACTC 59.393 55.000 0.00 0.00 0.00 3.51
2872 5134 1.053424 TTTCAGGTTCTACGCCCACT 58.947 50.000 0.00 0.00 0.00 4.00
2873 5135 1.886886 TTTTCAGGTTCTACGCCCAC 58.113 50.000 0.00 0.00 0.00 4.61
2874 5136 2.304761 AGATTTTCAGGTTCTACGCCCA 59.695 45.455 0.00 0.00 0.00 5.36
2875 5137 2.678336 CAGATTTTCAGGTTCTACGCCC 59.322 50.000 0.00 0.00 0.00 6.13
2876 5138 3.335579 ACAGATTTTCAGGTTCTACGCC 58.664 45.455 0.00 0.00 0.00 5.68
2877 5139 5.163884 GGTTACAGATTTTCAGGTTCTACGC 60.164 44.000 0.00 0.00 0.00 4.42
2878 5140 5.929992 TGGTTACAGATTTTCAGGTTCTACG 59.070 40.000 0.00 0.00 0.00 3.51
2879 5141 7.923414 ATGGTTACAGATTTTCAGGTTCTAC 57.077 36.000 0.00 0.00 0.00 2.59
2880 5142 7.333423 CGAATGGTTACAGATTTTCAGGTTCTA 59.667 37.037 0.00 0.00 0.00 2.10
2881 5143 6.149474 CGAATGGTTACAGATTTTCAGGTTCT 59.851 38.462 0.00 0.00 0.00 3.01
2882 5144 6.314784 CGAATGGTTACAGATTTTCAGGTTC 58.685 40.000 0.00 0.00 0.00 3.62
2883 5145 5.335661 GCGAATGGTTACAGATTTTCAGGTT 60.336 40.000 0.00 0.00 0.00 3.50
2884 5146 4.156008 GCGAATGGTTACAGATTTTCAGGT 59.844 41.667 0.00 0.00 0.00 4.00
2885 5147 4.396166 AGCGAATGGTTACAGATTTTCAGG 59.604 41.667 0.00 0.00 0.00 3.86
2886 5148 5.447818 GGAGCGAATGGTTACAGATTTTCAG 60.448 44.000 0.00 0.00 0.00 3.02
2887 5149 4.394920 GGAGCGAATGGTTACAGATTTTCA 59.605 41.667 0.00 0.00 0.00 2.69
2888 5150 4.394920 TGGAGCGAATGGTTACAGATTTTC 59.605 41.667 0.00 0.00 0.00 2.29
2889 5151 4.331968 TGGAGCGAATGGTTACAGATTTT 58.668 39.130 0.00 0.00 0.00 1.82
2890 5152 3.950397 TGGAGCGAATGGTTACAGATTT 58.050 40.909 0.00 0.00 0.00 2.17
2891 5153 3.627395 TGGAGCGAATGGTTACAGATT 57.373 42.857 0.00 0.00 0.00 2.40
2892 5154 3.470709 CATGGAGCGAATGGTTACAGAT 58.529 45.455 0.00 0.00 0.00 2.90
2893 5155 2.905075 CATGGAGCGAATGGTTACAGA 58.095 47.619 0.00 0.00 0.00 3.41
2894 5156 1.331756 GCATGGAGCGAATGGTTACAG 59.668 52.381 0.00 0.00 0.00 2.74
2895 5157 1.378531 GCATGGAGCGAATGGTTACA 58.621 50.000 0.00 0.00 0.00 2.41
2911 5173 5.707298 AGAATAAATATGCCAAGCTACGCAT 59.293 36.000 20.54 20.54 47.00 4.73
2914 5176 5.180117 AGCAGAATAAATATGCCAAGCTACG 59.820 40.000 0.00 0.00 40.89 3.51
2915 5177 6.566197 AGCAGAATAAATATGCCAAGCTAC 57.434 37.500 0.00 0.00 40.89 3.58
2916 5178 7.000472 AGAAGCAGAATAAATATGCCAAGCTA 59.000 34.615 0.00 0.00 40.89 3.32
2917 5179 5.832060 AGAAGCAGAATAAATATGCCAAGCT 59.168 36.000 0.00 0.00 40.89 3.74
2936 5198 1.475682 CCATGGAAGGAAGCAAGAAGC 59.524 52.381 5.56 0.00 46.19 3.86
2938 5200 2.978156 ACCATGGAAGGAAGCAAGAA 57.022 45.000 21.47 0.00 0.00 2.52
2939 5201 3.266772 ACATACCATGGAAGGAAGCAAGA 59.733 43.478 21.47 0.00 33.60 3.02
2940 5202 3.379372 CACATACCATGGAAGGAAGCAAG 59.621 47.826 21.47 0.00 33.60 4.01
2941 5203 3.010027 TCACATACCATGGAAGGAAGCAA 59.990 43.478 21.47 0.00 33.60 3.91
2975 5237 1.109323 AAACTCAGCAAGCCACCCAC 61.109 55.000 0.00 0.00 0.00 4.61
2980 5242 1.457823 CCAGCAAACTCAGCAAGCCA 61.458 55.000 0.00 0.00 0.00 4.75
3042 5304 5.620738 ACAAAGCTAGGCTGATCTATGAA 57.379 39.130 0.00 0.00 39.62 2.57
3047 5309 2.356535 CCCAACAAAGCTAGGCTGATCT 60.357 50.000 0.00 0.00 39.62 2.75
3048 5310 2.019984 CCCAACAAAGCTAGGCTGATC 58.980 52.381 0.00 0.00 39.62 2.92
3049 5311 1.957113 GCCCAACAAAGCTAGGCTGAT 60.957 52.381 0.00 0.00 39.62 2.90
3050 5312 0.609131 GCCCAACAAAGCTAGGCTGA 60.609 55.000 0.00 0.00 39.62 4.26
3051 5313 1.885871 GCCCAACAAAGCTAGGCTG 59.114 57.895 0.00 0.00 39.62 4.85
3052 5314 1.675641 CGCCCAACAAAGCTAGGCT 60.676 57.895 0.00 0.00 41.60 4.58
3053 5315 1.971695 ACGCCCAACAAAGCTAGGC 60.972 57.895 0.00 0.00 40.33 3.93
3054 5316 4.397348 ACGCCCAACAAAGCTAGG 57.603 55.556 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.