Multiple sequence alignment - TraesCS5A01G283800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G283800 chr5A 100.000 2573 0 0 1 2573 491741606 491744178 0.000000e+00 4752.0
1 TraesCS5A01G283800 chr5A 92.500 160 12 0 2414 2573 460410919 460411078 1.990000e-56 230.0
2 TraesCS5A01G283800 chr5A 90.123 162 14 2 2414 2573 597671901 597672062 2.590000e-50 209.0
3 TraesCS5A01G283800 chr5A 94.565 92 5 0 69 160 382961869 382961778 2.670000e-30 143.0
4 TraesCS5A01G283800 chr5A 90.909 66 5 1 1 66 290467861 290467797 1.270000e-13 87.9
5 TraesCS5A01G283800 chr5B 91.153 859 32 21 786 1612 467138676 467137830 0.000000e+00 1125.0
6 TraesCS5A01G283800 chr5B 91.617 501 28 3 298 785 467139217 467138718 0.000000e+00 680.0
7 TraesCS5A01G283800 chr5B 83.617 763 64 32 1620 2371 467137792 467137080 0.000000e+00 660.0
8 TraesCS5A01G283800 chr5D 88.952 878 37 29 787 1612 388794963 388794094 0.000000e+00 1029.0
9 TraesCS5A01G283800 chr5D 83.563 797 63 26 1620 2404 388794056 388793316 0.000000e+00 684.0
10 TraesCS5A01G283800 chr5D 90.020 501 22 7 298 785 388795507 388795022 7.820000e-175 623.0
11 TraesCS5A01G283800 chr5D 90.909 66 5 1 1 66 352820325 352820389 1.270000e-13 87.9
12 TraesCS5A01G283800 chr3A 92.593 162 10 2 2414 2573 533961123 533960962 5.540000e-57 231.0
13 TraesCS5A01G283800 chr6A 92.547 161 11 1 2414 2573 601004601 601004441 1.990000e-56 230.0
14 TraesCS5A01G283800 chr6A 88.199 161 18 1 2414 2573 423315770 423315930 9.400000e-45 191.0
15 TraesCS5A01G283800 chr6A 91.837 98 7 1 69 165 46592987 46592890 4.470000e-28 135.0
16 TraesCS5A01G283800 chr4A 92.500 160 12 0 2414 2573 146663791 146663950 1.990000e-56 230.0
17 TraesCS5A01G283800 chr4A 92.784 97 6 1 69 165 29304529 29304624 3.450000e-29 139.0
18 TraesCS5A01G283800 chr4A 93.478 92 6 0 69 160 148757454 148757363 1.240000e-28 137.0
19 TraesCS5A01G283800 chr4A 90.476 105 8 2 69 171 594180101 594179997 1.240000e-28 137.0
20 TraesCS5A01G283800 chr7A 91.304 161 13 1 2414 2573 438212821 438212981 4.310000e-53 219.0
21 TraesCS5A01G283800 chr7A 94.382 89 5 0 69 157 158656352 158656440 1.240000e-28 137.0
22 TraesCS5A01G283800 chr7A 94.382 89 5 0 69 157 188026707 188026619 1.240000e-28 137.0
23 TraesCS5A01G283800 chr7A 88.776 98 6 2 69 161 473919878 473919975 5.820000e-22 115.0
24 TraesCS5A01G283800 chr2A 91.720 157 12 1 2418 2573 570013153 570012997 1.550000e-52 217.0
25 TraesCS5A01G283800 chr2A 88.272 162 17 2 2414 2573 672084004 672083843 2.610000e-45 193.0
26 TraesCS5A01G283800 chr2A 93.000 100 7 0 66 165 583073575 583073674 2.060000e-31 147.0
27 TraesCS5A01G283800 chr2A 94.382 89 5 0 69 157 23884539 23884451 1.240000e-28 137.0
28 TraesCS5A01G283800 chr2A 89.474 95 10 0 69 163 720446408 720446314 1.250000e-23 121.0
29 TraesCS5A01G283800 chrUn 88.542 96 11 0 72 167 41497365 41497270 1.620000e-22 117.0
30 TraesCS5A01G283800 chr3B 96.970 66 2 0 1 66 132638940 132639005 7.530000e-21 111.0
31 TraesCS5A01G283800 chr3B 93.750 64 4 0 3 66 553470921 553470858 2.110000e-16 97.1
32 TraesCS5A01G283800 chr4B 93.548 62 4 0 1 62 517495740 517495679 2.730000e-15 93.5
33 TraesCS5A01G283800 chr1A 94.828 58 3 0 1 58 429018524 429018467 9.800000e-15 91.6
34 TraesCS5A01G283800 chr3D 92.188 64 3 2 3 65 575932502 575932564 3.530000e-14 89.8
35 TraesCS5A01G283800 chr2D 92.063 63 4 1 3 65 458717313 458717252 1.270000e-13 87.9
36 TraesCS5A01G283800 chr4D 90.625 64 6 0 3 66 322033373 322033436 4.560000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G283800 chr5A 491741606 491744178 2572 False 4752.000000 4752 100.000000 1 2573 1 chr5A.!!$F2 2572
1 TraesCS5A01G283800 chr5B 467137080 467139217 2137 True 821.666667 1125 88.795667 298 2371 3 chr5B.!!$R1 2073
2 TraesCS5A01G283800 chr5D 388793316 388795507 2191 True 778.666667 1029 87.511667 298 2404 3 chr5D.!!$R1 2106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.036388 ACACGGAAGCGGACATTGAT 60.036 50.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 1987 0.106708 ATGCCATACCATCGAGCGTT 59.893 50.0 0.0 0.0 0.0 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.119801 ATGGACACATGGACTCTTGC 57.880 50.000 0.00 0.00 35.57 4.01
21 22 0.036732 TGGACACATGGACTCTTGCC 59.963 55.000 0.00 0.00 0.00 4.52
22 23 1.021390 GGACACATGGACTCTTGCCG 61.021 60.000 0.00 0.00 0.00 5.69
23 24 1.003355 ACACATGGACTCTTGCCGG 60.003 57.895 0.00 0.00 0.00 6.13
24 25 2.045926 ACATGGACTCTTGCCGGC 60.046 61.111 22.73 22.73 0.00 6.13
25 26 2.825836 CATGGACTCTTGCCGGCC 60.826 66.667 26.77 6.80 0.00 6.13
26 27 3.011517 ATGGACTCTTGCCGGCCT 61.012 61.111 26.77 0.00 0.00 5.19
27 28 2.606587 ATGGACTCTTGCCGGCCTT 61.607 57.895 26.77 2.48 0.00 4.35
28 29 2.034221 GGACTCTTGCCGGCCTTT 59.966 61.111 26.77 2.92 0.00 3.11
29 30 2.335712 GGACTCTTGCCGGCCTTTG 61.336 63.158 26.77 14.38 0.00 2.77
30 31 1.600916 GACTCTTGCCGGCCTTTGT 60.601 57.895 26.77 17.73 0.00 2.83
31 32 1.856265 GACTCTTGCCGGCCTTTGTG 61.856 60.000 26.77 13.87 0.00 3.33
32 33 2.597217 TCTTGCCGGCCTTTGTGG 60.597 61.111 26.77 6.01 39.35 4.17
41 42 4.089105 CCTTTGTGGCCGGCTTTA 57.911 55.556 28.56 10.66 0.00 1.85
42 43 2.346597 CCTTTGTGGCCGGCTTTAA 58.653 52.632 28.56 15.63 0.00 1.52
43 44 0.894835 CCTTTGTGGCCGGCTTTAAT 59.105 50.000 28.56 0.00 0.00 1.40
44 45 1.404047 CCTTTGTGGCCGGCTTTAATG 60.404 52.381 28.56 18.34 0.00 1.90
45 46 1.272212 CTTTGTGGCCGGCTTTAATGT 59.728 47.619 28.56 0.00 0.00 2.71
46 47 1.333177 TTGTGGCCGGCTTTAATGTT 58.667 45.000 28.56 0.00 0.00 2.71
47 48 1.333177 TGTGGCCGGCTTTAATGTTT 58.667 45.000 28.56 0.00 0.00 2.83
48 49 2.515854 TGTGGCCGGCTTTAATGTTTA 58.484 42.857 28.56 0.00 0.00 2.01
49 50 2.891580 TGTGGCCGGCTTTAATGTTTAA 59.108 40.909 28.56 0.00 0.00 1.52
50 51 3.511934 TGTGGCCGGCTTTAATGTTTAAT 59.488 39.130 28.56 0.00 0.00 1.40
51 52 4.021016 TGTGGCCGGCTTTAATGTTTAATT 60.021 37.500 28.56 0.00 0.00 1.40
52 53 5.185249 TGTGGCCGGCTTTAATGTTTAATTA 59.815 36.000 28.56 0.00 0.00 1.40
53 54 6.100668 GTGGCCGGCTTTAATGTTTAATTAA 58.899 36.000 28.56 0.00 0.00 1.40
54 55 6.759356 GTGGCCGGCTTTAATGTTTAATTAAT 59.241 34.615 28.56 0.00 0.00 1.40
55 56 6.758886 TGGCCGGCTTTAATGTTTAATTAATG 59.241 34.615 28.56 0.00 0.00 1.90
56 57 6.759356 GGCCGGCTTTAATGTTTAATTAATGT 59.241 34.615 28.56 0.00 0.00 2.71
57 58 7.279090 GGCCGGCTTTAATGTTTAATTAATGTT 59.721 33.333 28.56 0.00 0.00 2.71
58 59 8.661257 GCCGGCTTTAATGTTTAATTAATGTTT 58.339 29.630 22.15 0.00 0.00 2.83
94 95 7.665561 TCACACGAATCTCAATGTAAAATCA 57.334 32.000 0.00 0.00 0.00 2.57
95 96 8.093659 TCACACGAATCTCAATGTAAAATCAA 57.906 30.769 0.00 0.00 0.00 2.57
96 97 8.729756 TCACACGAATCTCAATGTAAAATCAAT 58.270 29.630 0.00 0.00 0.00 2.57
97 98 8.791605 CACACGAATCTCAATGTAAAATCAATG 58.208 33.333 0.00 0.00 0.00 2.82
98 99 8.729756 ACACGAATCTCAATGTAAAATCAATGA 58.270 29.630 0.00 0.00 0.00 2.57
99 100 9.003112 CACGAATCTCAATGTAAAATCAATGAC 57.997 33.333 0.00 0.00 0.00 3.06
100 101 8.729756 ACGAATCTCAATGTAAAATCAATGACA 58.270 29.630 0.00 0.00 0.00 3.58
101 102 9.726232 CGAATCTCAATGTAAAATCAATGACAT 57.274 29.630 0.00 0.00 34.00 3.06
116 117 9.842775 AATCAATGACATATGACTTAGATGTGT 57.157 29.630 10.38 0.00 41.09 3.72
149 150 7.977789 TGTCAAATCTAGATGTGTTTTAGCA 57.022 32.000 20.21 9.64 0.00 3.49
150 151 8.389779 TGTCAAATCTAGATGTGTTTTAGCAA 57.610 30.769 20.21 0.00 0.00 3.91
151 152 8.845227 TGTCAAATCTAGATGTGTTTTAGCAAA 58.155 29.630 20.21 0.00 0.00 3.68
152 153 9.677567 GTCAAATCTAGATGTGTTTTAGCAAAA 57.322 29.630 20.21 0.00 0.00 2.44
203 204 3.004283 TTTTTCGCGCAACGTCGA 58.996 50.000 8.75 0.00 44.19 4.20
204 205 1.347564 TTTTTCGCGCAACGTCGAA 59.652 47.368 8.75 5.79 44.19 3.71
205 206 0.247576 TTTTTCGCGCAACGTCGAAA 60.248 45.000 15.83 15.83 45.17 3.46
206 207 0.042013 TTTTCGCGCAACGTCGAAAT 60.042 45.000 19.13 0.00 45.62 2.17
207 208 0.719846 TTTCGCGCAACGTCGAAATG 60.720 50.000 15.83 0.00 43.66 2.32
208 209 2.487443 TTCGCGCAACGTCGAAATGG 62.487 55.000 8.75 0.00 40.17 3.16
209 210 2.202298 GCGCAACGTCGAAATGGG 60.202 61.111 0.30 4.79 0.00 4.00
210 211 2.961669 GCGCAACGTCGAAATGGGT 61.962 57.895 0.30 0.00 0.00 4.51
211 212 1.131826 CGCAACGTCGAAATGGGTC 59.868 57.895 0.00 0.00 0.00 4.46
212 213 1.289109 CGCAACGTCGAAATGGGTCT 61.289 55.000 0.00 0.00 0.00 3.85
213 214 0.165944 GCAACGTCGAAATGGGTCTG 59.834 55.000 0.00 0.00 0.00 3.51
214 215 1.790755 CAACGTCGAAATGGGTCTGA 58.209 50.000 0.00 0.00 0.00 3.27
215 216 2.346803 CAACGTCGAAATGGGTCTGAT 58.653 47.619 0.00 0.00 0.00 2.90
216 217 2.295253 ACGTCGAAATGGGTCTGATC 57.705 50.000 0.00 0.00 0.00 2.92
217 218 1.548719 ACGTCGAAATGGGTCTGATCA 59.451 47.619 0.00 0.00 0.00 2.92
218 219 2.196749 CGTCGAAATGGGTCTGATCAG 58.803 52.381 17.07 17.07 0.00 2.90
219 220 1.936547 GTCGAAATGGGTCTGATCAGC 59.063 52.381 18.36 12.59 0.00 4.26
220 221 0.933097 CGAAATGGGTCTGATCAGCG 59.067 55.000 18.36 9.10 0.00 5.18
221 222 1.740380 CGAAATGGGTCTGATCAGCGT 60.740 52.381 18.36 2.79 0.00 5.07
222 223 2.359900 GAAATGGGTCTGATCAGCGTT 58.640 47.619 18.36 8.92 0.00 4.84
223 224 1.742761 AATGGGTCTGATCAGCGTTG 58.257 50.000 18.36 0.00 0.00 4.10
224 225 0.107508 ATGGGTCTGATCAGCGTTGG 60.108 55.000 18.36 0.00 0.00 3.77
225 226 1.450312 GGGTCTGATCAGCGTTGGG 60.450 63.158 18.36 0.00 0.00 4.12
226 227 2.109126 GGTCTGATCAGCGTTGGGC 61.109 63.158 18.36 0.00 44.05 5.36
235 236 4.218478 GCGTTGGGCGTATGCGTC 62.218 66.667 4.81 1.04 44.10 5.19
236 237 3.908951 CGTTGGGCGTATGCGTCG 61.909 66.667 4.81 0.00 44.78 5.12
237 238 2.507547 GTTGGGCGTATGCGTCGA 60.508 61.111 4.81 0.00 44.78 4.20
238 239 1.881252 GTTGGGCGTATGCGTCGAT 60.881 57.895 4.81 0.00 44.78 3.59
239 240 1.590525 TTGGGCGTATGCGTCGATC 60.591 57.895 4.81 0.00 44.78 3.69
240 241 2.733593 GGGCGTATGCGTCGATCC 60.734 66.667 4.81 0.00 44.78 3.36
241 242 2.027024 GGCGTATGCGTCGATCCA 59.973 61.111 4.81 0.00 44.10 3.41
242 243 1.590525 GGCGTATGCGTCGATCCAA 60.591 57.895 4.81 0.00 44.10 3.53
243 244 1.149361 GGCGTATGCGTCGATCCAAA 61.149 55.000 4.81 0.00 44.10 3.28
244 245 0.043310 GCGTATGCGTCGATCCAAAC 60.043 55.000 4.81 0.00 40.81 2.93
245 246 1.273688 CGTATGCGTCGATCCAAACA 58.726 50.000 0.00 0.00 0.00 2.83
246 247 1.006391 CGTATGCGTCGATCCAAACAC 60.006 52.381 0.00 0.00 0.00 3.32
247 248 1.006391 GTATGCGTCGATCCAAACACG 60.006 52.381 0.00 0.00 35.32 4.49
248 249 1.358725 ATGCGTCGATCCAAACACGG 61.359 55.000 0.00 0.00 32.79 4.94
249 250 1.735198 GCGTCGATCCAAACACGGA 60.735 57.895 0.00 0.00 40.07 4.69
250 251 1.286354 GCGTCGATCCAAACACGGAA 61.286 55.000 0.00 0.00 38.95 4.30
251 252 0.713883 CGTCGATCCAAACACGGAAG 59.286 55.000 0.00 0.00 38.95 3.46
252 253 0.442699 GTCGATCCAAACACGGAAGC 59.557 55.000 0.00 0.00 38.95 3.86
253 254 1.011968 TCGATCCAAACACGGAAGCG 61.012 55.000 0.00 0.00 38.95 4.68
254 255 1.794222 GATCCAAACACGGAAGCGG 59.206 57.895 0.00 0.00 38.95 5.52
255 256 0.672401 GATCCAAACACGGAAGCGGA 60.672 55.000 0.00 0.00 38.95 5.54
256 257 0.953960 ATCCAAACACGGAAGCGGAC 60.954 55.000 0.00 0.00 38.95 4.79
257 258 1.890041 CCAAACACGGAAGCGGACA 60.890 57.895 0.00 0.00 0.00 4.02
258 259 1.234615 CCAAACACGGAAGCGGACAT 61.235 55.000 0.00 0.00 0.00 3.06
259 260 0.591170 CAAACACGGAAGCGGACATT 59.409 50.000 0.00 0.00 0.00 2.71
260 261 0.591170 AAACACGGAAGCGGACATTG 59.409 50.000 0.00 0.00 0.00 2.82
261 262 0.250124 AACACGGAAGCGGACATTGA 60.250 50.000 0.00 0.00 0.00 2.57
262 263 0.036388 ACACGGAAGCGGACATTGAT 60.036 50.000 0.00 0.00 0.00 2.57
263 264 0.374758 CACGGAAGCGGACATTGATG 59.625 55.000 0.00 0.00 0.00 3.07
264 265 0.036388 ACGGAAGCGGACATTGATGT 60.036 50.000 0.00 0.00 45.16 3.06
265 266 1.086696 CGGAAGCGGACATTGATGTT 58.913 50.000 0.00 0.00 41.95 2.71
266 267 1.468520 CGGAAGCGGACATTGATGTTT 59.531 47.619 0.00 0.00 41.95 2.83
267 268 2.728846 CGGAAGCGGACATTGATGTTTG 60.729 50.000 0.00 0.00 41.95 2.93
268 269 2.228822 GGAAGCGGACATTGATGTTTGT 59.771 45.455 0.00 0.00 41.95 2.83
269 270 3.305335 GGAAGCGGACATTGATGTTTGTT 60.305 43.478 0.00 0.00 41.95 2.83
270 271 3.287312 AGCGGACATTGATGTTTGTTG 57.713 42.857 0.00 0.00 41.95 3.33
271 272 2.030007 AGCGGACATTGATGTTTGTTGG 60.030 45.455 0.00 0.00 41.95 3.77
272 273 2.030363 GCGGACATTGATGTTTGTTGGA 60.030 45.455 0.00 0.00 41.95 3.53
273 274 3.564511 CGGACATTGATGTTTGTTGGAC 58.435 45.455 0.00 0.00 41.95 4.02
274 275 3.611530 CGGACATTGATGTTTGTTGGACC 60.612 47.826 0.00 0.00 41.95 4.46
275 276 3.564511 GACATTGATGTTTGTTGGACCG 58.435 45.455 0.00 0.00 41.95 4.79
276 277 3.218453 ACATTGATGTTTGTTGGACCGA 58.782 40.909 0.00 0.00 37.90 4.69
277 278 3.004315 ACATTGATGTTTGTTGGACCGAC 59.996 43.478 4.73 4.73 37.90 4.79
278 279 2.631160 TGATGTTTGTTGGACCGACT 57.369 45.000 13.25 0.00 0.00 4.18
279 280 2.489971 TGATGTTTGTTGGACCGACTC 58.510 47.619 13.25 2.58 0.00 3.36
280 281 2.158885 TGATGTTTGTTGGACCGACTCA 60.159 45.455 13.25 9.72 0.00 3.41
281 282 2.404923 TGTTTGTTGGACCGACTCAA 57.595 45.000 13.25 3.50 0.00 3.02
282 283 2.712709 TGTTTGTTGGACCGACTCAAA 58.287 42.857 13.25 3.66 0.00 2.69
283 284 2.420722 TGTTTGTTGGACCGACTCAAAC 59.579 45.455 13.25 14.96 44.23 2.93
284 285 1.292061 TTGTTGGACCGACTCAAACG 58.708 50.000 13.25 0.00 0.00 3.60
303 304 6.311935 TCAAACGGATAAAAATCTGACGGTAG 59.688 38.462 1.32 0.00 0.00 3.18
326 327 2.420890 GGCAGGCAGATCTCTCCG 59.579 66.667 0.00 0.00 0.00 4.63
447 448 0.800683 TAGATCGCGGTCGCACTTTG 60.801 55.000 14.75 0.00 42.06 2.77
463 464 3.059597 CACTTTGAGAATCCACGTGACAC 60.060 47.826 19.30 5.53 0.00 3.67
520 521 1.522258 CAACGTTTGACAAATGCTGCC 59.478 47.619 18.10 0.00 0.00 4.85
597 598 4.752879 AACCACACGATCCGGCGG 62.753 66.667 22.51 22.51 35.12 6.13
616 622 0.714439 GCTAAACCGCTCGTCAGAAC 59.286 55.000 0.00 0.00 0.00 3.01
618 624 0.387622 TAAACCGCTCGTCAGAACCG 60.388 55.000 0.00 0.00 0.00 4.44
849 922 7.437793 CTAGTACCAGCACTTATACTAGTCC 57.562 44.000 0.00 0.00 40.81 3.85
1089 1180 1.918800 CTCCAACCTCCGGGACCTT 60.919 63.158 0.00 0.00 36.25 3.50
1612 1744 1.102809 TCACATCCATCCATTGGCGC 61.103 55.000 0.00 0.00 46.01 6.53
1613 1745 1.829533 ACATCCATCCATTGGCGCC 60.830 57.895 22.73 22.73 46.01 6.53
1614 1746 2.203538 ATCCATCCATTGGCGCCC 60.204 61.111 26.77 6.44 46.01 6.13
1616 1748 2.376225 ATCCATCCATTGGCGCCCAT 62.376 55.000 26.77 17.16 46.01 4.00
1618 1750 1.068417 CATCCATTGGCGCCCATTG 59.932 57.895 26.77 18.14 35.42 2.82
1620 1752 3.852307 CCATTGGCGCCCATTGGG 61.852 66.667 26.77 18.09 45.83 4.12
1633 1794 1.142465 CCATTGGGAGACTGCTAGCAT 59.858 52.381 19.72 8.65 35.59 3.79
1657 1818 9.776158 CATCATTCGGTGTATAGAACTATAGAC 57.224 37.037 15.95 15.95 39.91 2.59
1699 1860 8.118976 TGATTTCTTCTTCCTTCTTCGTACTA 57.881 34.615 0.00 0.00 0.00 1.82
1701 1862 8.989653 ATTTCTTCTTCCTTCTTCGTACTAAG 57.010 34.615 0.72 0.72 0.00 2.18
1703 1864 8.627208 TTCTTCTTCCTTCTTCGTACTAAGTA 57.373 34.615 6.99 0.00 0.00 2.24
1704 1865 8.627208 TCTTCTTCCTTCTTCGTACTAAGTAA 57.373 34.615 6.99 0.96 0.00 2.24
1705 1866 8.510505 TCTTCTTCCTTCTTCGTACTAAGTAAC 58.489 37.037 6.99 0.00 0.00 2.50
1741 1912 7.870509 ACATTGAATACAGTACTGCATCATT 57.129 32.000 22.90 15.66 0.00 2.57
1744 1915 6.908870 TGAATACAGTACTGCATCATTGTC 57.091 37.500 22.90 9.83 0.00 3.18
1746 1917 6.536224 TGAATACAGTACTGCATCATTGTCAG 59.464 38.462 22.90 0.00 34.89 3.51
1759 1930 5.556355 TCATTGTCAGTTCATCAATCTGC 57.444 39.130 0.00 0.00 30.74 4.26
1812 1983 3.181490 TGCAGTTAAGATGCTCGTACGAT 60.181 43.478 19.87 3.56 44.17 3.73
1813 1984 4.035909 TGCAGTTAAGATGCTCGTACGATA 59.964 41.667 19.87 11.54 44.17 2.92
1814 1985 4.379204 GCAGTTAAGATGCTCGTACGATAC 59.621 45.833 19.87 14.49 40.59 2.24
1815 1986 6.825926 GCAGTTAAGATGCTCGTACGATACG 61.826 48.000 19.87 8.59 42.62 3.06
1833 2004 2.226269 GAACGCTCGATGGTATGGC 58.774 57.895 0.00 0.00 0.00 4.40
1834 2005 0.529773 GAACGCTCGATGGTATGGCA 60.530 55.000 0.00 0.00 0.00 4.92
1835 2006 0.106708 AACGCTCGATGGTATGGCAT 59.893 50.000 4.88 4.88 0.00 4.40
1836 2007 0.601046 ACGCTCGATGGTATGGCATG 60.601 55.000 10.98 0.00 0.00 4.06
1837 2008 1.293963 CGCTCGATGGTATGGCATGG 61.294 60.000 10.98 0.00 0.00 3.66
1877 2049 2.856988 TCCAGGGTGGTTGGGGTC 60.857 66.667 0.00 0.00 39.03 4.46
1904 2076 1.103803 TCATTAAGCTCGACTCGCCT 58.896 50.000 0.00 0.00 0.00 5.52
1905 2077 2.294979 TCATTAAGCTCGACTCGCCTA 58.705 47.619 0.00 0.00 0.00 3.93
1912 2084 2.181021 CGACTCGCCTAGCCGTTT 59.819 61.111 0.00 0.00 0.00 3.60
1913 2085 1.445582 CGACTCGCCTAGCCGTTTT 60.446 57.895 0.00 0.00 0.00 2.43
1918 2090 0.669318 TCGCCTAGCCGTTTTCAGTG 60.669 55.000 0.00 0.00 0.00 3.66
1921 2093 1.608283 GCCTAGCCGTTTTCAGTGTCT 60.608 52.381 0.00 0.00 0.00 3.41
1928 2101 2.544267 CCGTTTTCAGTGTCTTCTGTCC 59.456 50.000 0.00 0.00 36.85 4.02
2056 2232 1.527844 GGCCTGACCTGATGATGCC 60.528 63.158 0.00 0.00 34.51 4.40
2145 2321 3.343617 CTCTCGTCTCCTCTTCTGTTCT 58.656 50.000 0.00 0.00 0.00 3.01
2147 2323 2.077627 TCGTCTCCTCTTCTGTTCTCG 58.922 52.381 0.00 0.00 0.00 4.04
2159 2335 4.156664 TCTGTTCTCGTTCTCTTTACCG 57.843 45.455 0.00 0.00 0.00 4.02
2160 2336 3.057736 TCTGTTCTCGTTCTCTTTACCGG 60.058 47.826 0.00 0.00 0.00 5.28
2175 2351 7.011669 TCTCTTTACCGGTTGTGAAAGTTAAAG 59.988 37.037 15.04 12.55 32.05 1.85
2176 2352 3.703286 ACCGGTTGTGAAAGTTAAAGC 57.297 42.857 0.00 0.00 0.00 3.51
2177 2353 2.032426 ACCGGTTGTGAAAGTTAAAGCG 59.968 45.455 0.00 0.00 41.69 4.68
2178 2354 2.288458 CCGGTTGTGAAAGTTAAAGCGA 59.712 45.455 7.34 0.00 43.96 4.93
2181 2357 4.436523 CGGTTGTGAAAGTTAAAGCGAAAG 59.563 41.667 0.00 0.00 43.96 2.62
2183 2359 8.800305 CGGTTGTGAAAGTTAAAGCGAAAGGT 62.800 42.308 0.00 0.00 43.96 3.50
2184 2360 6.458615 GGTTGTGAAAGTTAAAGCGAAAGGTA 60.459 38.462 0.00 0.00 43.76 3.08
2191 2367 2.681152 AAAGCGAAAGGTAAGCAACG 57.319 45.000 0.00 0.00 43.76 4.10
2193 2369 0.882927 AGCGAAAGGTAAGCAACGCA 60.883 50.000 0.00 0.00 46.65 5.24
2206 2382 3.049674 ACGCATCGTTGGCACTGG 61.050 61.111 0.00 0.00 36.35 4.00
2207 2383 3.803082 CGCATCGTTGGCACTGGG 61.803 66.667 0.00 0.00 0.00 4.45
2208 2384 2.672996 GCATCGTTGGCACTGGGT 60.673 61.111 0.00 0.00 0.00 4.51
2209 2385 2.690778 GCATCGTTGGCACTGGGTC 61.691 63.158 0.00 0.00 0.00 4.46
2210 2386 1.302431 CATCGTTGGCACTGGGTCA 60.302 57.895 0.00 0.00 0.00 4.02
2211 2387 1.302511 ATCGTTGGCACTGGGTCAC 60.303 57.895 0.00 0.00 0.00 3.67
2212 2388 1.768684 ATCGTTGGCACTGGGTCACT 61.769 55.000 0.00 0.00 0.00 3.41
2213 2389 2.253758 CGTTGGCACTGGGTCACTG 61.254 63.158 0.00 0.00 0.00 3.66
2214 2390 1.898574 GTTGGCACTGGGTCACTGG 60.899 63.158 0.00 0.00 0.00 4.00
2215 2391 3.132029 TTGGCACTGGGTCACTGGG 62.132 63.158 0.00 0.00 0.00 4.45
2216 2392 3.249189 GGCACTGGGTCACTGGGA 61.249 66.667 0.00 0.00 0.00 4.37
2217 2393 2.348998 GCACTGGGTCACTGGGAG 59.651 66.667 0.00 0.00 0.00 4.30
2218 2394 2.217038 GCACTGGGTCACTGGGAGA 61.217 63.158 0.00 0.00 0.00 3.71
2219 2395 1.674057 CACTGGGTCACTGGGAGAC 59.326 63.158 0.00 0.00 35.29 3.36
2220 2396 1.908793 ACTGGGTCACTGGGAGACG 60.909 63.158 0.00 0.00 36.87 4.18
2231 2410 1.543802 CTGGGAGACGAGATAGATGGC 59.456 57.143 0.00 0.00 38.67 4.40
2261 2449 2.553602 CAACTGCACTTGTGCTATTGGA 59.446 45.455 23.53 4.48 35.49 3.53
2271 2459 1.468520 GTGCTATTGGACGCAACATGT 59.531 47.619 0.00 0.00 37.97 3.21
2290 2478 2.203195 TGCACACTCTGCCCACAC 60.203 61.111 0.00 0.00 46.51 3.82
2321 2509 3.671716 GTTAGATCTCGTTGGTTGGGTT 58.328 45.455 0.00 0.00 0.00 4.11
2323 2511 1.165270 GATCTCGTTGGTTGGGTTGG 58.835 55.000 0.00 0.00 0.00 3.77
2324 2512 0.476771 ATCTCGTTGGTTGGGTTGGT 59.523 50.000 0.00 0.00 0.00 3.67
2325 2513 0.256464 TCTCGTTGGTTGGGTTGGTT 59.744 50.000 0.00 0.00 0.00 3.67
2326 2514 0.383949 CTCGTTGGTTGGGTTGGTTG 59.616 55.000 0.00 0.00 0.00 3.77
2327 2515 1.038130 TCGTTGGTTGGGTTGGTTGG 61.038 55.000 0.00 0.00 0.00 3.77
2328 2516 1.826709 GTTGGTTGGGTTGGTTGGG 59.173 57.895 0.00 0.00 0.00 4.12
2329 2517 2.066999 TTGGTTGGGTTGGTTGGGC 61.067 57.895 0.00 0.00 0.00 5.36
2371 2559 2.100749 CCATCACACGCACTATGGTAGA 59.899 50.000 0.00 0.00 35.23 2.59
2374 2562 4.041740 TCACACGCACTATGGTAGAATC 57.958 45.455 0.00 0.00 0.00 2.52
2407 2596 6.584185 AAAAACCGCACTATGGTAATCTTT 57.416 33.333 0.00 0.00 39.29 2.52
2408 2597 5.813080 AAACCGCACTATGGTAATCTTTC 57.187 39.130 0.00 0.00 39.29 2.62
2409 2598 4.481368 ACCGCACTATGGTAATCTTTCA 57.519 40.909 0.00 0.00 38.15 2.69
2410 2599 4.442706 ACCGCACTATGGTAATCTTTCAG 58.557 43.478 0.00 0.00 38.15 3.02
2411 2600 4.161565 ACCGCACTATGGTAATCTTTCAGA 59.838 41.667 0.00 0.00 38.15 3.27
2412 2601 4.747108 CCGCACTATGGTAATCTTTCAGAG 59.253 45.833 0.00 0.00 0.00 3.35
2413 2602 5.352284 CGCACTATGGTAATCTTTCAGAGT 58.648 41.667 0.00 0.00 33.87 3.24
2414 2603 6.461092 CCGCACTATGGTAATCTTTCAGAGTA 60.461 42.308 0.00 0.00 32.14 2.59
2415 2604 7.148641 CGCACTATGGTAATCTTTCAGAGTAT 58.851 38.462 0.00 0.00 32.14 2.12
2416 2605 8.297426 CGCACTATGGTAATCTTTCAGAGTATA 58.703 37.037 0.00 0.00 32.14 1.47
2432 2621 8.754991 TCAGAGTATATCTAAATAGCTAGCCC 57.245 38.462 12.13 0.00 36.10 5.19
2433 2622 8.561769 TCAGAGTATATCTAAATAGCTAGCCCT 58.438 37.037 12.13 0.00 36.10 5.19
2434 2623 8.846211 CAGAGTATATCTAAATAGCTAGCCCTC 58.154 40.741 12.13 0.00 36.10 4.30
2435 2624 8.561769 AGAGTATATCTAAATAGCTAGCCCTCA 58.438 37.037 12.13 0.00 36.10 3.86
2436 2625 8.528044 AGTATATCTAAATAGCTAGCCCTCAC 57.472 38.462 12.13 0.00 0.00 3.51
2437 2626 8.340757 AGTATATCTAAATAGCTAGCCCTCACT 58.659 37.037 12.13 0.00 0.00 3.41
2438 2627 9.629878 GTATATCTAAATAGCTAGCCCTCACTA 57.370 37.037 12.13 0.00 0.00 2.74
2440 2629 9.722317 ATATCTAAATAGCTAGCCCTCACTAAT 57.278 33.333 12.13 0.00 0.00 1.73
2441 2630 7.857404 TCTAAATAGCTAGCCCTCACTAATT 57.143 36.000 12.13 0.00 0.00 1.40
2442 2631 8.951614 TCTAAATAGCTAGCCCTCACTAATTA 57.048 34.615 12.13 0.00 0.00 1.40
2443 2632 9.548631 TCTAAATAGCTAGCCCTCACTAATTAT 57.451 33.333 12.13 0.00 0.00 1.28
2446 2635 9.508642 AAATAGCTAGCCCTCACTAATTATTTC 57.491 33.333 12.13 0.00 0.00 2.17
2447 2636 6.755542 AGCTAGCCCTCACTAATTATTTCT 57.244 37.500 12.13 0.00 0.00 2.52
2448 2637 6.764379 AGCTAGCCCTCACTAATTATTTCTC 58.236 40.000 12.13 0.00 0.00 2.87
2449 2638 6.556874 AGCTAGCCCTCACTAATTATTTCTCT 59.443 38.462 12.13 0.00 0.00 3.10
2450 2639 6.871492 GCTAGCCCTCACTAATTATTTCTCTC 59.129 42.308 2.29 0.00 0.00 3.20
2451 2640 6.814954 AGCCCTCACTAATTATTTCTCTCA 57.185 37.500 0.00 0.00 0.00 3.27
2452 2641 7.200434 AGCCCTCACTAATTATTTCTCTCAA 57.800 36.000 0.00 0.00 0.00 3.02
2453 2642 7.051000 AGCCCTCACTAATTATTTCTCTCAAC 58.949 38.462 0.00 0.00 0.00 3.18
2454 2643 6.823689 GCCCTCACTAATTATTTCTCTCAACA 59.176 38.462 0.00 0.00 0.00 3.33
2455 2644 7.500559 GCCCTCACTAATTATTTCTCTCAACAT 59.499 37.037 0.00 0.00 0.00 2.71
2456 2645 8.834465 CCCTCACTAATTATTTCTCTCAACATG 58.166 37.037 0.00 0.00 0.00 3.21
2457 2646 8.341173 CCTCACTAATTATTTCTCTCAACATGC 58.659 37.037 0.00 0.00 0.00 4.06
2458 2647 8.791327 TCACTAATTATTTCTCTCAACATGCA 57.209 30.769 0.00 0.00 0.00 3.96
2459 2648 9.230122 TCACTAATTATTTCTCTCAACATGCAA 57.770 29.630 0.00 0.00 0.00 4.08
2460 2649 9.499585 CACTAATTATTTCTCTCAACATGCAAG 57.500 33.333 0.00 0.00 0.00 4.01
2461 2650 8.186821 ACTAATTATTTCTCTCAACATGCAAGC 58.813 33.333 0.00 0.00 0.00 4.01
2462 2651 5.963176 TTATTTCTCTCAACATGCAAGCA 57.037 34.783 0.00 0.00 0.00 3.91
2463 2652 6.519679 TTATTTCTCTCAACATGCAAGCAT 57.480 33.333 0.86 0.86 37.08 3.79
2475 2664 2.173433 CAAGCATGCCACGTCATCA 58.827 52.632 15.66 0.00 0.00 3.07
2476 2665 0.179181 CAAGCATGCCACGTCATCAC 60.179 55.000 15.66 0.00 0.00 3.06
2477 2666 0.606130 AAGCATGCCACGTCATCACA 60.606 50.000 15.66 0.00 0.00 3.58
2478 2667 1.135315 GCATGCCACGTCATCACAC 59.865 57.895 6.36 0.00 0.00 3.82
2479 2668 1.576451 GCATGCCACGTCATCACACA 61.576 55.000 6.36 0.00 0.00 3.72
2480 2669 0.873721 CATGCCACGTCATCACACAA 59.126 50.000 0.00 0.00 0.00 3.33
2481 2670 0.874390 ATGCCACGTCATCACACAAC 59.126 50.000 0.00 0.00 0.00 3.32
2482 2671 0.462759 TGCCACGTCATCACACAACA 60.463 50.000 0.00 0.00 0.00 3.33
2483 2672 0.874390 GCCACGTCATCACACAACAT 59.126 50.000 0.00 0.00 0.00 2.71
2484 2673 1.400113 GCCACGTCATCACACAACATG 60.400 52.381 0.00 0.00 0.00 3.21
2485 2674 1.872952 CCACGTCATCACACAACATGT 59.127 47.619 0.00 0.00 44.81 3.21
2486 2675 3.063485 CCACGTCATCACACAACATGTA 58.937 45.455 0.00 0.00 40.64 2.29
2487 2676 3.684305 CCACGTCATCACACAACATGTAT 59.316 43.478 0.00 0.00 40.64 2.29
2488 2677 4.867608 CCACGTCATCACACAACATGTATA 59.132 41.667 0.00 0.00 40.64 1.47
2489 2678 5.350091 CCACGTCATCACACAACATGTATAA 59.650 40.000 0.00 0.00 40.64 0.98
2490 2679 6.455513 CCACGTCATCACACAACATGTATAAG 60.456 42.308 0.00 0.00 40.64 1.73
2491 2680 6.310224 CACGTCATCACACAACATGTATAAGA 59.690 38.462 0.00 0.00 40.64 2.10
2492 2681 6.871492 ACGTCATCACACAACATGTATAAGAA 59.129 34.615 0.00 0.00 40.64 2.52
2493 2682 7.386573 ACGTCATCACACAACATGTATAAGAAA 59.613 33.333 0.00 0.00 40.64 2.52
2494 2683 8.227119 CGTCATCACACAACATGTATAAGAAAA 58.773 33.333 0.00 0.00 40.64 2.29
2495 2684 9.546909 GTCATCACACAACATGTATAAGAAAAG 57.453 33.333 0.00 0.00 40.64 2.27
2496 2685 8.729756 TCATCACACAACATGTATAAGAAAAGG 58.270 33.333 0.00 0.00 40.64 3.11
2497 2686 6.908825 TCACACAACATGTATAAGAAAAGGC 58.091 36.000 0.00 0.00 40.64 4.35
2498 2687 6.488344 TCACACAACATGTATAAGAAAAGGCA 59.512 34.615 0.00 0.00 40.64 4.75
2499 2688 6.582295 CACACAACATGTATAAGAAAAGGCAC 59.418 38.462 0.00 0.00 40.64 5.01
2500 2689 6.264292 ACACAACATGTATAAGAAAAGGCACA 59.736 34.615 0.00 0.00 40.88 4.57
2501 2690 6.582295 CACAACATGTATAAGAAAAGGCACAC 59.418 38.462 0.00 0.00 0.00 3.82
2502 2691 6.490040 ACAACATGTATAAGAAAAGGCACACT 59.510 34.615 0.00 0.00 0.00 3.55
2503 2692 6.743575 ACATGTATAAGAAAAGGCACACTC 57.256 37.500 0.00 0.00 0.00 3.51
2504 2693 5.648092 ACATGTATAAGAAAAGGCACACTCC 59.352 40.000 0.00 0.00 0.00 3.85
2505 2694 4.585879 TGTATAAGAAAAGGCACACTCCC 58.414 43.478 0.00 0.00 0.00 4.30
2506 2695 3.806949 ATAAGAAAAGGCACACTCCCA 57.193 42.857 0.00 0.00 0.00 4.37
2507 2696 1.692411 AAGAAAAGGCACACTCCCAC 58.308 50.000 0.00 0.00 0.00 4.61
2508 2697 0.846693 AGAAAAGGCACACTCCCACT 59.153 50.000 0.00 0.00 0.00 4.00
2509 2698 2.054799 AGAAAAGGCACACTCCCACTA 58.945 47.619 0.00 0.00 0.00 2.74
2510 2699 2.644798 AGAAAAGGCACACTCCCACTAT 59.355 45.455 0.00 0.00 0.00 2.12
2511 2700 2.789409 AAAGGCACACTCCCACTATC 57.211 50.000 0.00 0.00 0.00 2.08
2512 2701 1.656587 AAGGCACACTCCCACTATCA 58.343 50.000 0.00 0.00 0.00 2.15
2513 2702 1.885049 AGGCACACTCCCACTATCAT 58.115 50.000 0.00 0.00 0.00 2.45
2514 2703 3.046283 AGGCACACTCCCACTATCATA 57.954 47.619 0.00 0.00 0.00 2.15
2515 2704 3.591789 AGGCACACTCCCACTATCATAT 58.408 45.455 0.00 0.00 0.00 1.78
2516 2705 3.326006 AGGCACACTCCCACTATCATATG 59.674 47.826 0.00 0.00 0.00 1.78
2517 2706 3.071602 GGCACACTCCCACTATCATATGT 59.928 47.826 1.90 0.00 0.00 2.29
2518 2707 4.310769 GCACACTCCCACTATCATATGTC 58.689 47.826 1.90 0.00 0.00 3.06
2519 2708 4.039730 GCACACTCCCACTATCATATGTCT 59.960 45.833 1.90 0.00 0.00 3.41
2520 2709 5.453903 GCACACTCCCACTATCATATGTCTT 60.454 44.000 1.90 0.00 0.00 3.01
2521 2710 6.586344 CACACTCCCACTATCATATGTCTTT 58.414 40.000 1.90 0.00 0.00 2.52
2522 2711 7.050377 CACACTCCCACTATCATATGTCTTTT 58.950 38.462 1.90 0.00 0.00 2.27
2523 2712 7.554118 CACACTCCCACTATCATATGTCTTTTT 59.446 37.037 1.90 0.00 0.00 1.94
2524 2713 8.768397 ACACTCCCACTATCATATGTCTTTTTA 58.232 33.333 1.90 0.00 0.00 1.52
2525 2714 9.046296 CACTCCCACTATCATATGTCTTTTTAC 57.954 37.037 1.90 0.00 0.00 2.01
2526 2715 8.768397 ACTCCCACTATCATATGTCTTTTTACA 58.232 33.333 1.90 0.00 0.00 2.41
2527 2716 9.784531 CTCCCACTATCATATGTCTTTTTACAT 57.215 33.333 1.90 0.00 42.62 2.29
2528 2717 9.559732 TCCCACTATCATATGTCTTTTTACATG 57.440 33.333 1.90 0.00 40.29 3.21
2529 2718 8.292448 CCCACTATCATATGTCTTTTTACATGC 58.708 37.037 1.90 0.00 40.29 4.06
2530 2719 8.839343 CCACTATCATATGTCTTTTTACATGCA 58.161 33.333 1.90 0.00 40.29 3.96
2550 2739 4.911514 CAATCATGCCACTTGATCATGA 57.088 40.909 15.03 0.00 46.99 3.07
2551 2740 4.440940 GCAATCATGCCACTTGATCATGAA 60.441 41.667 15.03 0.00 46.35 2.57
2552 2741 5.656480 CAATCATGCCACTTGATCATGAAA 58.344 37.500 15.03 0.00 46.35 2.69
2553 2742 6.280643 CAATCATGCCACTTGATCATGAAAT 58.719 36.000 15.03 0.00 46.35 2.17
2554 2743 7.430441 CAATCATGCCACTTGATCATGAAATA 58.570 34.615 15.03 0.40 46.35 1.40
2555 2744 7.776618 ATCATGCCACTTGATCATGAAATAT 57.223 32.000 15.03 2.49 46.35 1.28
2556 2745 6.977213 TCATGCCACTTGATCATGAAATATG 58.023 36.000 15.03 12.49 42.28 1.78
2557 2746 5.190992 TGCCACTTGATCATGAAATATGC 57.809 39.130 15.03 8.16 0.00 3.14
2558 2747 4.645588 TGCCACTTGATCATGAAATATGCA 59.354 37.500 15.03 10.17 0.00 3.96
2559 2748 5.303333 TGCCACTTGATCATGAAATATGCAT 59.697 36.000 15.03 3.79 0.00 3.96
2560 2749 5.633601 GCCACTTGATCATGAAATATGCATG 59.366 40.000 10.16 10.93 43.39 4.06
2570 2759 8.692110 TCATGAAATATGCATGAAAAAGACAC 57.308 30.769 10.16 0.00 46.48 3.67
2571 2760 8.305317 TCATGAAATATGCATGAAAAAGACACA 58.695 29.630 10.16 0.00 46.48 3.72
2572 2761 9.093970 CATGAAATATGCATGAAAAAGACACAT 57.906 29.630 10.16 0.00 44.49 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.092968 GGCAAGAGTCCATGTGTCCATA 60.093 50.000 0.00 0.00 0.00 2.74
1 2 1.340405 GGCAAGAGTCCATGTGTCCAT 60.340 52.381 0.00 0.00 0.00 3.41
2 3 0.036732 GGCAAGAGTCCATGTGTCCA 59.963 55.000 0.00 0.00 0.00 4.02
3 4 1.021390 CGGCAAGAGTCCATGTGTCC 61.021 60.000 0.00 0.00 0.00 4.02
4 5 1.021390 CCGGCAAGAGTCCATGTGTC 61.021 60.000 0.00 0.00 0.00 3.67
5 6 1.003355 CCGGCAAGAGTCCATGTGT 60.003 57.895 0.00 0.00 0.00 3.72
6 7 2.401766 GCCGGCAAGAGTCCATGTG 61.402 63.158 24.80 0.00 0.00 3.21
7 8 2.045926 GCCGGCAAGAGTCCATGT 60.046 61.111 24.80 0.00 0.00 3.21
8 9 2.825836 GGCCGGCAAGAGTCCATG 60.826 66.667 30.85 0.00 0.00 3.66
9 10 2.142292 AAAGGCCGGCAAGAGTCCAT 62.142 55.000 30.85 0.00 0.00 3.41
10 11 2.829384 AAAGGCCGGCAAGAGTCCA 61.829 57.895 30.85 0.00 0.00 4.02
11 12 2.034221 AAAGGCCGGCAAGAGTCC 59.966 61.111 30.85 8.87 0.00 3.85
12 13 1.600916 ACAAAGGCCGGCAAGAGTC 60.601 57.895 30.85 9.73 0.00 3.36
13 14 1.898574 CACAAAGGCCGGCAAGAGT 60.899 57.895 30.85 18.15 0.00 3.24
14 15 2.629656 CCACAAAGGCCGGCAAGAG 61.630 63.158 30.85 17.43 0.00 2.85
15 16 2.597217 CCACAAAGGCCGGCAAGA 60.597 61.111 30.85 0.00 0.00 3.02
24 25 0.894835 ATTAAAGCCGGCCACAAAGG 59.105 50.000 26.15 0.00 41.84 3.11
25 26 1.272212 ACATTAAAGCCGGCCACAAAG 59.728 47.619 26.15 13.64 0.00 2.77
26 27 1.333177 ACATTAAAGCCGGCCACAAA 58.667 45.000 26.15 13.35 0.00 2.83
27 28 1.333177 AACATTAAAGCCGGCCACAA 58.667 45.000 26.15 15.00 0.00 3.33
28 29 1.333177 AAACATTAAAGCCGGCCACA 58.667 45.000 26.15 4.80 0.00 4.17
29 30 3.579335 TTAAACATTAAAGCCGGCCAC 57.421 42.857 26.15 0.00 0.00 5.01
30 31 4.810191 AATTAAACATTAAAGCCGGCCA 57.190 36.364 26.15 5.71 0.00 5.36
31 32 6.759356 ACATTAATTAAACATTAAAGCCGGCC 59.241 34.615 26.15 5.07 0.00 6.13
32 33 7.764695 ACATTAATTAAACATTAAAGCCGGC 57.235 32.000 21.89 21.89 0.00 6.13
69 70 8.093659 TGATTTTACATTGAGATTCGTGTGAA 57.906 30.769 0.00 0.00 38.76 3.18
70 71 7.665561 TGATTTTACATTGAGATTCGTGTGA 57.334 32.000 0.00 0.00 0.00 3.58
71 72 8.791605 CATTGATTTTACATTGAGATTCGTGTG 58.208 33.333 0.00 0.00 0.00 3.82
72 73 8.729756 TCATTGATTTTACATTGAGATTCGTGT 58.270 29.630 0.00 0.00 0.00 4.49
73 74 9.003112 GTCATTGATTTTACATTGAGATTCGTG 57.997 33.333 0.00 0.00 33.09 4.35
74 75 8.729756 TGTCATTGATTTTACATTGAGATTCGT 58.270 29.630 0.00 0.00 33.09 3.85
75 76 9.726232 ATGTCATTGATTTTACATTGAGATTCG 57.274 29.630 0.00 0.00 33.57 3.34
90 91 9.842775 ACACATCTAAGTCATATGTCATTGATT 57.157 29.630 1.90 0.00 31.60 2.57
123 124 9.665719 TGCTAAAACACATCTAGATTTGACATA 57.334 29.630 22.67 11.80 0.00 2.29
124 125 8.565896 TGCTAAAACACATCTAGATTTGACAT 57.434 30.769 22.67 11.38 0.00 3.06
125 126 7.977789 TGCTAAAACACATCTAGATTTGACA 57.022 32.000 22.67 9.49 0.00 3.58
126 127 9.677567 TTTTGCTAAAACACATCTAGATTTGAC 57.322 29.630 22.67 7.51 0.00 3.18
186 187 0.247576 TTTCGACGTTGCGCGAAAAA 60.248 45.000 12.10 0.00 44.56 1.94
187 188 1.347564 TTTCGACGTTGCGCGAAAA 59.652 47.368 12.10 0.00 44.56 2.29
188 189 3.004283 TTTCGACGTTGCGCGAAA 58.996 50.000 12.10 15.83 44.93 3.46
189 190 1.154745 CATTTCGACGTTGCGCGAA 60.155 52.632 12.10 0.00 44.77 4.70
190 191 2.468096 CATTTCGACGTTGCGCGA 59.532 55.556 12.10 0.00 44.77 5.87
192 193 2.202298 CCCATTTCGACGTTGCGC 60.202 61.111 0.00 0.00 0.00 6.09
193 194 1.131826 GACCCATTTCGACGTTGCG 59.868 57.895 0.00 0.00 0.00 4.85
194 195 0.165944 CAGACCCATTTCGACGTTGC 59.834 55.000 0.00 0.00 0.00 4.17
195 196 1.790755 TCAGACCCATTTCGACGTTG 58.209 50.000 0.00 0.00 0.00 4.10
196 197 2.028476 TGATCAGACCCATTTCGACGTT 60.028 45.455 0.00 0.00 0.00 3.99
197 198 1.548719 TGATCAGACCCATTTCGACGT 59.451 47.619 0.00 0.00 0.00 4.34
198 199 2.196749 CTGATCAGACCCATTTCGACG 58.803 52.381 18.34 0.00 0.00 5.12
199 200 1.936547 GCTGATCAGACCCATTTCGAC 59.063 52.381 27.04 0.00 0.00 4.20
200 201 1.471501 CGCTGATCAGACCCATTTCGA 60.472 52.381 27.04 0.00 0.00 3.71
201 202 0.933097 CGCTGATCAGACCCATTTCG 59.067 55.000 27.04 13.20 0.00 3.46
202 203 2.029838 ACGCTGATCAGACCCATTTC 57.970 50.000 27.04 4.81 0.00 2.17
203 204 2.086869 CAACGCTGATCAGACCCATTT 58.913 47.619 27.04 6.06 0.00 2.32
204 205 1.679944 CCAACGCTGATCAGACCCATT 60.680 52.381 27.04 8.93 0.00 3.16
205 206 0.107508 CCAACGCTGATCAGACCCAT 60.108 55.000 27.04 4.12 0.00 4.00
206 207 1.296392 CCAACGCTGATCAGACCCA 59.704 57.895 27.04 0.00 0.00 4.51
207 208 1.450312 CCCAACGCTGATCAGACCC 60.450 63.158 27.04 7.81 0.00 4.46
208 209 2.109126 GCCCAACGCTGATCAGACC 61.109 63.158 27.04 8.57 0.00 3.85
209 210 2.456119 CGCCCAACGCTGATCAGAC 61.456 63.158 27.04 15.81 34.21 3.51
210 211 2.125552 CGCCCAACGCTGATCAGA 60.126 61.111 27.04 0.00 34.21 3.27
220 221 1.818221 GATCGACGCATACGCCCAAC 61.818 60.000 0.00 0.00 45.53 3.77
221 222 1.590525 GATCGACGCATACGCCCAA 60.591 57.895 0.00 0.00 45.53 4.12
222 223 2.027024 GATCGACGCATACGCCCA 59.973 61.111 0.00 0.00 45.53 5.36
223 224 2.733593 GGATCGACGCATACGCCC 60.734 66.667 0.00 0.00 45.53 6.13
224 225 1.149361 TTTGGATCGACGCATACGCC 61.149 55.000 0.00 0.00 45.53 5.68
225 226 0.043310 GTTTGGATCGACGCATACGC 60.043 55.000 0.00 0.00 45.53 4.42
227 228 1.006391 CGTGTTTGGATCGACGCATAC 60.006 52.381 0.00 0.00 0.00 2.39
228 229 1.273688 CGTGTTTGGATCGACGCATA 58.726 50.000 0.00 0.00 0.00 3.14
229 230 1.358725 CCGTGTTTGGATCGACGCAT 61.359 55.000 0.00 0.00 0.00 4.73
230 231 2.024868 CCGTGTTTGGATCGACGCA 61.025 57.895 0.00 0.00 0.00 5.24
231 232 1.286354 TTCCGTGTTTGGATCGACGC 61.286 55.000 0.00 0.00 38.00 5.19
232 233 0.713883 CTTCCGTGTTTGGATCGACG 59.286 55.000 0.00 0.00 38.00 5.12
233 234 0.442699 GCTTCCGTGTTTGGATCGAC 59.557 55.000 0.00 0.00 38.00 4.20
234 235 1.011968 CGCTTCCGTGTTTGGATCGA 61.012 55.000 0.00 0.00 38.00 3.59
235 236 1.419922 CGCTTCCGTGTTTGGATCG 59.580 57.895 0.00 0.00 38.00 3.69
236 237 0.672401 TCCGCTTCCGTGTTTGGATC 60.672 55.000 0.00 0.00 38.00 3.36
237 238 0.953960 GTCCGCTTCCGTGTTTGGAT 60.954 55.000 0.00 0.00 38.00 3.41
238 239 1.595929 GTCCGCTTCCGTGTTTGGA 60.596 57.895 0.00 0.00 35.83 3.53
239 240 1.234615 ATGTCCGCTTCCGTGTTTGG 61.235 55.000 0.00 0.00 0.00 3.28
240 241 0.591170 AATGTCCGCTTCCGTGTTTG 59.409 50.000 0.00 0.00 0.00 2.93
241 242 0.591170 CAATGTCCGCTTCCGTGTTT 59.409 50.000 0.00 0.00 0.00 2.83
242 243 0.250124 TCAATGTCCGCTTCCGTGTT 60.250 50.000 0.00 0.00 0.00 3.32
243 244 0.036388 ATCAATGTCCGCTTCCGTGT 60.036 50.000 0.00 0.00 0.00 4.49
244 245 0.374758 CATCAATGTCCGCTTCCGTG 59.625 55.000 0.00 0.00 0.00 4.94
245 246 0.036388 ACATCAATGTCCGCTTCCGT 60.036 50.000 0.00 0.00 35.87 4.69
246 247 1.086696 AACATCAATGTCCGCTTCCG 58.913 50.000 0.00 0.00 40.80 4.30
247 248 2.228822 ACAAACATCAATGTCCGCTTCC 59.771 45.455 0.00 0.00 40.80 3.46
248 249 3.559238 ACAAACATCAATGTCCGCTTC 57.441 42.857 0.00 0.00 40.80 3.86
249 250 3.552684 CCAACAAACATCAATGTCCGCTT 60.553 43.478 0.00 0.00 40.80 4.68
250 251 2.030007 CCAACAAACATCAATGTCCGCT 60.030 45.455 0.00 0.00 40.80 5.52
251 252 2.030363 TCCAACAAACATCAATGTCCGC 60.030 45.455 0.00 0.00 40.80 5.54
252 253 3.564511 GTCCAACAAACATCAATGTCCG 58.435 45.455 0.00 0.00 40.80 4.79
253 254 3.611530 CGGTCCAACAAACATCAATGTCC 60.612 47.826 0.00 0.00 40.80 4.02
254 255 3.252215 TCGGTCCAACAAACATCAATGTC 59.748 43.478 0.00 0.00 40.80 3.06
255 256 3.004315 GTCGGTCCAACAAACATCAATGT 59.996 43.478 0.00 0.00 44.20 2.71
256 257 3.253188 AGTCGGTCCAACAAACATCAATG 59.747 43.478 0.00 0.00 0.00 2.82
257 258 3.486383 AGTCGGTCCAACAAACATCAAT 58.514 40.909 0.00 0.00 0.00 2.57
258 259 2.875933 GAGTCGGTCCAACAAACATCAA 59.124 45.455 0.00 0.00 0.00 2.57
259 260 2.158885 TGAGTCGGTCCAACAAACATCA 60.159 45.455 0.00 0.00 0.00 3.07
260 261 2.489971 TGAGTCGGTCCAACAAACATC 58.510 47.619 0.00 0.00 0.00 3.06
261 262 2.631160 TGAGTCGGTCCAACAAACAT 57.369 45.000 0.00 0.00 0.00 2.71
262 263 2.404923 TTGAGTCGGTCCAACAAACA 57.595 45.000 0.00 0.00 0.00 2.83
263 264 2.538132 CGTTTGAGTCGGTCCAACAAAC 60.538 50.000 0.00 0.00 43.45 2.93
264 265 1.666700 CGTTTGAGTCGGTCCAACAAA 59.333 47.619 0.00 0.00 31.52 2.83
265 266 1.292061 CGTTTGAGTCGGTCCAACAA 58.708 50.000 0.00 0.00 31.52 2.83
266 267 0.531090 CCGTTTGAGTCGGTCCAACA 60.531 55.000 0.00 0.00 42.62 3.33
267 268 0.249573 TCCGTTTGAGTCGGTCCAAC 60.250 55.000 4.36 0.00 46.86 3.77
268 269 0.682852 ATCCGTTTGAGTCGGTCCAA 59.317 50.000 4.36 0.00 46.86 3.53
269 270 1.548081 TATCCGTTTGAGTCGGTCCA 58.452 50.000 4.36 0.00 46.86 4.02
270 271 2.660189 TTATCCGTTTGAGTCGGTCC 57.340 50.000 4.36 0.00 46.86 4.46
271 272 4.996062 TTTTTATCCGTTTGAGTCGGTC 57.004 40.909 4.36 0.00 46.86 4.79
272 273 5.121768 CAGATTTTTATCCGTTTGAGTCGGT 59.878 40.000 4.36 0.00 46.86 4.69
274 275 6.241385 GTCAGATTTTTATCCGTTTGAGTCG 58.759 40.000 0.00 0.00 0.00 4.18
275 276 6.241385 CGTCAGATTTTTATCCGTTTGAGTC 58.759 40.000 0.00 0.00 0.00 3.36
276 277 5.121768 CCGTCAGATTTTTATCCGTTTGAGT 59.878 40.000 0.00 0.00 0.00 3.41
277 278 5.121768 ACCGTCAGATTTTTATCCGTTTGAG 59.878 40.000 0.00 0.00 0.00 3.02
278 279 4.998672 ACCGTCAGATTTTTATCCGTTTGA 59.001 37.500 0.00 0.00 0.00 2.69
279 280 5.291293 ACCGTCAGATTTTTATCCGTTTG 57.709 39.130 0.00 0.00 0.00 2.93
280 281 6.400568 TCTACCGTCAGATTTTTATCCGTTT 58.599 36.000 0.00 0.00 0.00 3.60
281 282 5.969423 TCTACCGTCAGATTTTTATCCGTT 58.031 37.500 0.00 0.00 0.00 4.44
282 283 5.587388 TCTACCGTCAGATTTTTATCCGT 57.413 39.130 0.00 0.00 0.00 4.69
283 284 5.051907 CGTTCTACCGTCAGATTTTTATCCG 60.052 44.000 0.00 0.00 0.00 4.18
284 285 5.809051 ACGTTCTACCGTCAGATTTTTATCC 59.191 40.000 0.00 0.00 35.95 2.59
285 286 6.237755 CCACGTTCTACCGTCAGATTTTTATC 60.238 42.308 0.00 0.00 39.45 1.75
286 287 5.579511 CCACGTTCTACCGTCAGATTTTTAT 59.420 40.000 0.00 0.00 39.45 1.40
287 288 4.925054 CCACGTTCTACCGTCAGATTTTTA 59.075 41.667 0.00 0.00 39.45 1.52
288 289 3.744426 CCACGTTCTACCGTCAGATTTTT 59.256 43.478 0.00 0.00 39.45 1.94
289 290 3.323243 CCACGTTCTACCGTCAGATTTT 58.677 45.455 0.00 0.00 39.45 1.82
290 291 2.929592 GCCACGTTCTACCGTCAGATTT 60.930 50.000 0.00 0.00 39.45 2.17
291 292 1.403780 GCCACGTTCTACCGTCAGATT 60.404 52.381 0.00 0.00 39.45 2.40
292 293 0.172803 GCCACGTTCTACCGTCAGAT 59.827 55.000 0.00 0.00 39.45 2.90
293 294 1.174078 TGCCACGTTCTACCGTCAGA 61.174 55.000 0.00 0.00 39.45 3.27
294 295 0.732880 CTGCCACGTTCTACCGTCAG 60.733 60.000 0.00 0.00 39.45 3.51
295 296 1.287815 CTGCCACGTTCTACCGTCA 59.712 57.895 0.00 0.00 39.45 4.35
296 297 1.445582 CCTGCCACGTTCTACCGTC 60.446 63.158 0.00 0.00 39.45 4.79
303 304 1.078848 AGATCTGCCTGCCACGTTC 60.079 57.895 0.00 0.00 0.00 3.95
308 309 2.429767 CGGAGAGATCTGCCTGCCA 61.430 63.158 0.00 0.00 0.00 4.92
365 366 2.026734 CTCGTCGATCGCAGCCAT 59.973 61.111 11.09 0.00 39.67 4.40
368 369 2.580867 AAGCTCGTCGATCGCAGC 60.581 61.111 19.83 19.83 40.33 5.25
447 448 1.335597 TGTCGTGTCACGTGGATTCTC 60.336 52.381 23.82 3.91 43.14 2.87
463 464 3.122250 GACGGACCTCGGGATGTCG 62.122 68.421 0.00 0.00 44.45 4.35
485 486 2.979676 TTGCAGCTGCGTCTTGGG 60.980 61.111 32.11 0.00 45.83 4.12
488 489 1.714899 AAACGTTGCAGCTGCGTCTT 61.715 50.000 32.11 18.31 45.83 3.01
585 586 2.202824 TTTAGCCGCCGGATCGTG 60.203 61.111 7.68 0.00 0.00 4.35
597 598 0.714439 GTTCTGACGAGCGGTTTAGC 59.286 55.000 0.00 0.00 37.41 3.09
647 653 2.733593 GCGGCGACTGACTTTCGT 60.734 61.111 12.98 0.00 38.77 3.85
769 783 2.124736 ATCGGCCATTGTCCGGTG 60.125 61.111 6.26 0.00 46.43 4.94
794 865 3.432378 ACTGTACCCAGGTAGACTCTTG 58.568 50.000 0.00 0.00 43.36 3.02
825 898 6.996879 TGGACTAGTATAAGTGCTGGTACTAG 59.003 42.308 19.04 19.04 46.07 2.57
826 899 6.903516 TGGACTAGTATAAGTGCTGGTACTA 58.096 40.000 0.00 0.00 38.53 1.82
827 900 5.763355 TGGACTAGTATAAGTGCTGGTACT 58.237 41.667 0.00 0.00 38.53 2.73
835 908 7.094720 CCTCCTCGTATTGGACTAGTATAAGTG 60.095 44.444 0.00 0.00 0.00 3.16
839 912 6.271857 ACTCCTCCTCGTATTGGACTAGTATA 59.728 42.308 0.00 0.00 0.00 1.47
840 913 5.073417 ACTCCTCCTCGTATTGGACTAGTAT 59.927 44.000 0.00 0.00 0.00 2.12
841 914 4.411540 ACTCCTCCTCGTATTGGACTAGTA 59.588 45.833 0.00 0.00 0.00 1.82
849 922 5.471257 GCCTAAATACTCCTCCTCGTATTG 58.529 45.833 0.00 0.00 36.67 1.90
1586 1718 2.746375 GGATGGATGTGAGCCGGGT 61.746 63.158 5.45 5.45 0.00 5.28
1612 1744 0.179034 GCTAGCAGTCTCCCAATGGG 60.179 60.000 13.28 13.28 46.11 4.00
1613 1745 0.543277 TGCTAGCAGTCTCCCAATGG 59.457 55.000 14.93 0.00 0.00 3.16
1614 1746 2.158856 TGATGCTAGCAGTCTCCCAATG 60.159 50.000 23.89 0.00 0.00 2.82
1616 1748 1.571955 TGATGCTAGCAGTCTCCCAA 58.428 50.000 23.89 0.00 0.00 4.12
1618 1750 2.765122 GAATGATGCTAGCAGTCTCCC 58.235 52.381 23.89 6.79 0.00 4.30
1620 1752 2.223923 ACCGAATGATGCTAGCAGTCTC 60.224 50.000 23.89 16.10 0.00 3.36
1621 1753 1.759445 ACCGAATGATGCTAGCAGTCT 59.241 47.619 23.89 6.25 0.00 3.24
1622 1754 1.863454 CACCGAATGATGCTAGCAGTC 59.137 52.381 23.89 19.11 0.00 3.51
1623 1755 1.208052 ACACCGAATGATGCTAGCAGT 59.792 47.619 23.89 10.57 0.00 4.40
1625 1757 3.751479 ATACACCGAATGATGCTAGCA 57.249 42.857 21.85 21.85 0.00 3.49
1627 1759 6.682746 AGTTCTATACACCGAATGATGCTAG 58.317 40.000 0.00 0.00 0.00 3.42
1629 1761 5.537300 AGTTCTATACACCGAATGATGCT 57.463 39.130 0.00 0.00 0.00 3.79
1633 1794 8.913487 TGTCTATAGTTCTATACACCGAATGA 57.087 34.615 0.00 0.00 0.00 2.57
1657 1818 5.182001 AGAAATCAACAACGGGAGAGATTTG 59.818 40.000 10.65 0.00 36.25 2.32
1665 1826 3.818773 GGAAGAAGAAATCAACAACGGGA 59.181 43.478 0.00 0.00 0.00 5.14
1666 1827 3.821033 AGGAAGAAGAAATCAACAACGGG 59.179 43.478 0.00 0.00 0.00 5.28
1703 1864 9.950680 CTGTATTCAATGTTTTCACTTGTAGTT 57.049 29.630 0.00 0.00 0.00 2.24
1704 1865 9.120538 ACTGTATTCAATGTTTTCACTTGTAGT 57.879 29.630 0.00 0.00 0.00 2.73
1722 1890 6.536582 ACTGACAATGATGCAGTACTGTATTC 59.463 38.462 24.74 18.21 40.06 1.75
1741 1912 4.276058 TGAGCAGATTGATGAACTGACA 57.724 40.909 0.00 0.00 34.07 3.58
1744 1915 6.047231 TGTAGATGAGCAGATTGATGAACTG 58.953 40.000 0.00 0.00 35.14 3.16
1746 1917 6.915544 TTGTAGATGAGCAGATTGATGAAC 57.084 37.500 0.00 0.00 0.00 3.18
1759 1930 4.210746 CGATCCAGCATGTTTGTAGATGAG 59.789 45.833 0.00 0.00 0.00 2.90
1812 1983 1.002142 CCATACCATCGAGCGTTCGTA 60.002 52.381 21.11 6.86 46.72 3.43
1813 1984 0.248907 CCATACCATCGAGCGTTCGT 60.249 55.000 21.11 6.26 46.72 3.85
1815 1986 0.529773 TGCCATACCATCGAGCGTTC 60.530 55.000 0.00 0.00 0.00 3.95
1816 1987 0.106708 ATGCCATACCATCGAGCGTT 59.893 50.000 0.00 0.00 0.00 4.84
1817 1988 0.601046 CATGCCATACCATCGAGCGT 60.601 55.000 0.00 0.00 0.00 5.07
1818 1989 1.293963 CCATGCCATACCATCGAGCG 61.294 60.000 0.00 0.00 0.00 5.03
1819 1990 0.250467 ACCATGCCATACCATCGAGC 60.250 55.000 0.00 0.00 0.00 5.03
1820 1991 2.037121 TGTACCATGCCATACCATCGAG 59.963 50.000 0.00 0.00 0.00 4.04
1821 1992 2.037121 CTGTACCATGCCATACCATCGA 59.963 50.000 0.00 0.00 0.00 3.59
1822 1993 2.416747 CTGTACCATGCCATACCATCG 58.583 52.381 0.00 0.00 0.00 3.84
1823 1994 2.154462 GCTGTACCATGCCATACCATC 58.846 52.381 0.00 0.00 0.00 3.51
1824 1995 1.494296 TGCTGTACCATGCCATACCAT 59.506 47.619 0.00 0.00 0.00 3.55
1825 1996 0.915364 TGCTGTACCATGCCATACCA 59.085 50.000 0.00 0.00 0.00 3.25
1826 1997 1.308998 GTGCTGTACCATGCCATACC 58.691 55.000 0.00 0.00 0.00 2.73
1827 1998 0.937304 CGTGCTGTACCATGCCATAC 59.063 55.000 0.00 0.00 0.00 2.39
1828 1999 0.813610 GCGTGCTGTACCATGCCATA 60.814 55.000 5.31 0.00 40.89 2.74
1829 2000 2.114670 GCGTGCTGTACCATGCCAT 61.115 57.895 5.31 0.00 40.89 4.40
1830 2001 2.745884 GCGTGCTGTACCATGCCA 60.746 61.111 5.31 0.00 40.89 4.92
1831 2002 3.864686 CGCGTGCTGTACCATGCC 61.865 66.667 0.00 0.00 43.17 4.40
1832 2003 4.520846 GCGCGTGCTGTACCATGC 62.521 66.667 15.02 6.32 42.78 4.06
1833 2004 4.208948 CGCGCGTGCTGTACCATG 62.209 66.667 24.19 0.00 39.65 3.66
1859 2030 3.182996 ACCCCAACCACCCTGGAC 61.183 66.667 0.00 0.00 40.96 4.02
1865 2036 2.750237 GCATCGACCCCAACCACC 60.750 66.667 0.00 0.00 0.00 4.61
1877 2049 2.156504 GTCGAGCTTAATGATGGCATCG 59.843 50.000 21.65 8.86 32.35 3.84
1904 2076 3.181469 ACAGAAGACACTGAAAACGGCTA 60.181 43.478 0.00 0.00 40.63 3.93
1905 2077 2.213499 CAGAAGACACTGAAAACGGCT 58.787 47.619 0.00 0.00 39.94 5.52
1912 2084 4.487714 AGTTTGGACAGAAGACACTGAA 57.512 40.909 0.00 0.00 40.63 3.02
1913 2085 4.081142 TGAAGTTTGGACAGAAGACACTGA 60.081 41.667 0.00 0.00 40.63 3.41
1918 2090 3.546218 GCGTTGAAGTTTGGACAGAAGAC 60.546 47.826 0.00 0.00 0.00 3.01
1921 2093 1.329292 CGCGTTGAAGTTTGGACAGAA 59.671 47.619 0.00 0.00 0.00 3.02
1928 2101 0.302288 TTCCGACGCGTTGAAGTTTG 59.698 50.000 27.96 9.84 0.00 2.93
2056 2232 1.635663 GGTCAACATCACCGCCGAAG 61.636 60.000 0.00 0.00 0.00 3.79
2145 2321 2.361757 TCACAACCGGTAAAGAGAACGA 59.638 45.455 8.00 0.00 0.00 3.85
2147 2323 4.573607 ACTTTCACAACCGGTAAAGAGAAC 59.426 41.667 26.73 0.00 33.98 3.01
2159 2335 4.738252 CCTTTCGCTTTAACTTTCACAACC 59.262 41.667 0.00 0.00 0.00 3.77
2160 2336 5.337554 ACCTTTCGCTTTAACTTTCACAAC 58.662 37.500 0.00 0.00 0.00 3.32
2175 2351 0.168128 ATGCGTTGCTTACCTTTCGC 59.832 50.000 0.00 0.00 43.14 4.70
2176 2352 1.526986 CGATGCGTTGCTTACCTTTCG 60.527 52.381 0.00 0.00 0.00 3.46
2177 2353 1.463444 ACGATGCGTTGCTTACCTTTC 59.537 47.619 0.00 0.00 36.35 2.62
2178 2354 1.519408 ACGATGCGTTGCTTACCTTT 58.481 45.000 0.00 0.00 36.35 3.11
2191 2367 2.672996 ACCCAGTGCCAACGATGC 60.673 61.111 0.00 0.00 0.00 3.91
2193 2369 1.302511 GTGACCCAGTGCCAACGAT 60.303 57.895 0.00 0.00 0.00 3.73
2200 2376 2.217038 TCTCCCAGTGACCCAGTGC 61.217 63.158 0.00 0.00 33.84 4.40
2202 2378 1.908793 CGTCTCCCAGTGACCCAGT 60.909 63.158 0.00 0.00 0.00 4.00
2203 2379 1.599606 CTCGTCTCCCAGTGACCCAG 61.600 65.000 0.00 0.00 0.00 4.45
2204 2380 1.606601 CTCGTCTCCCAGTGACCCA 60.607 63.158 0.00 0.00 0.00 4.51
2205 2381 0.684805 ATCTCGTCTCCCAGTGACCC 60.685 60.000 0.00 0.00 0.00 4.46
2206 2382 1.950909 CTATCTCGTCTCCCAGTGACC 59.049 57.143 0.00 0.00 0.00 4.02
2207 2383 2.920524 TCTATCTCGTCTCCCAGTGAC 58.079 52.381 0.00 0.00 0.00 3.67
2208 2384 3.481453 CATCTATCTCGTCTCCCAGTGA 58.519 50.000 0.00 0.00 0.00 3.41
2209 2385 2.556189 CCATCTATCTCGTCTCCCAGTG 59.444 54.545 0.00 0.00 0.00 3.66
2210 2386 2.870175 CCATCTATCTCGTCTCCCAGT 58.130 52.381 0.00 0.00 0.00 4.00
2211 2387 1.543802 GCCATCTATCTCGTCTCCCAG 59.456 57.143 0.00 0.00 0.00 4.45
2212 2388 1.621992 GCCATCTATCTCGTCTCCCA 58.378 55.000 0.00 0.00 0.00 4.37
2213 2389 0.523966 CGCCATCTATCTCGTCTCCC 59.476 60.000 0.00 0.00 0.00 4.30
2214 2390 1.524848 TCGCCATCTATCTCGTCTCC 58.475 55.000 0.00 0.00 0.00 3.71
2215 2391 4.948608 TTATCGCCATCTATCTCGTCTC 57.051 45.455 0.00 0.00 0.00 3.36
2216 2392 4.380023 GCTTTATCGCCATCTATCTCGTCT 60.380 45.833 0.00 0.00 0.00 4.18
2217 2393 3.854809 GCTTTATCGCCATCTATCTCGTC 59.145 47.826 0.00 0.00 0.00 4.20
2218 2394 3.839293 GCTTTATCGCCATCTATCTCGT 58.161 45.455 0.00 0.00 0.00 4.18
2231 2410 2.226437 ACAAGTGCAGTTGGCTTTATCG 59.774 45.455 32.09 9.58 45.15 2.92
2247 2435 1.535462 GTTGCGTCCAATAGCACAAGT 59.465 47.619 0.00 0.00 43.69 3.16
2261 2449 0.815213 AGTGTGCAGACATGTTGCGT 60.815 50.000 17.22 8.68 44.40 5.24
2321 2509 2.075355 CTTACCACCCAGCCCAACCA 62.075 60.000 0.00 0.00 0.00 3.67
2323 2511 1.977009 GCTTACCACCCAGCCCAAC 60.977 63.158 0.00 0.00 0.00 3.77
2324 2512 0.842905 TAGCTTACCACCCAGCCCAA 60.843 55.000 0.00 0.00 36.62 4.12
2325 2513 0.842905 TTAGCTTACCACCCAGCCCA 60.843 55.000 0.00 0.00 36.62 5.36
2326 2514 0.393944 GTTAGCTTACCACCCAGCCC 60.394 60.000 0.00 0.00 36.62 5.19
2327 2515 0.393944 GGTTAGCTTACCACCCAGCC 60.394 60.000 16.95 0.00 38.12 4.85
2328 2516 0.618981 AGGTTAGCTTACCACCCAGC 59.381 55.000 23.14 0.00 40.82 4.85
2329 2517 1.906574 TGAGGTTAGCTTACCACCCAG 59.093 52.381 23.14 0.00 40.82 4.45
2389 2578 4.693283 TCTGAAAGATTACCATAGTGCGG 58.307 43.478 0.00 0.00 38.67 5.69
2406 2595 9.191479 GGGCTAGCTATTTAGATATACTCTGAA 57.809 37.037 15.72 0.00 34.34 3.02
2407 2596 8.561769 AGGGCTAGCTATTTAGATATACTCTGA 58.438 37.037 15.72 0.00 35.28 3.27
2408 2597 8.760980 AGGGCTAGCTATTTAGATATACTCTG 57.239 38.462 15.72 0.00 35.28 3.35
2409 2598 8.561769 TGAGGGCTAGCTATTTAGATATACTCT 58.438 37.037 15.72 0.00 38.06 3.24
2410 2599 8.626526 GTGAGGGCTAGCTATTTAGATATACTC 58.373 40.741 15.72 4.78 0.00 2.59
2411 2600 8.340757 AGTGAGGGCTAGCTATTTAGATATACT 58.659 37.037 15.72 2.09 0.00 2.12
2412 2601 8.528044 AGTGAGGGCTAGCTATTTAGATATAC 57.472 38.462 15.72 0.00 0.00 1.47
2414 2603 9.722317 ATTAGTGAGGGCTAGCTATTTAGATAT 57.278 33.333 15.72 0.00 0.00 1.63
2415 2604 9.548631 AATTAGTGAGGGCTAGCTATTTAGATA 57.451 33.333 15.72 0.00 0.00 1.98
2416 2605 8.442660 AATTAGTGAGGGCTAGCTATTTAGAT 57.557 34.615 15.72 0.00 0.00 1.98
2417 2606 7.857404 AATTAGTGAGGGCTAGCTATTTAGA 57.143 36.000 15.72 0.00 0.00 2.10
2420 2609 9.508642 GAAATAATTAGTGAGGGCTAGCTATTT 57.491 33.333 15.72 11.96 30.65 1.40
2421 2610 8.885346 AGAAATAATTAGTGAGGGCTAGCTATT 58.115 33.333 15.72 3.86 0.00 1.73
2422 2611 8.442660 AGAAATAATTAGTGAGGGCTAGCTAT 57.557 34.615 15.72 2.98 0.00 2.97
2423 2612 7.730784 AGAGAAATAATTAGTGAGGGCTAGCTA 59.269 37.037 15.72 0.00 0.00 3.32
2424 2613 6.556874 AGAGAAATAATTAGTGAGGGCTAGCT 59.443 38.462 15.72 0.00 0.00 3.32
2425 2614 6.764379 AGAGAAATAATTAGTGAGGGCTAGC 58.236 40.000 6.04 6.04 0.00 3.42
2426 2615 7.957002 TGAGAGAAATAATTAGTGAGGGCTAG 58.043 38.462 0.00 0.00 0.00 3.42
2427 2616 7.914427 TGAGAGAAATAATTAGTGAGGGCTA 57.086 36.000 0.00 0.00 0.00 3.93
2428 2617 6.814954 TGAGAGAAATAATTAGTGAGGGCT 57.185 37.500 0.00 0.00 0.00 5.19
2429 2618 6.823689 TGTTGAGAGAAATAATTAGTGAGGGC 59.176 38.462 0.00 0.00 0.00 5.19
2430 2619 8.834465 CATGTTGAGAGAAATAATTAGTGAGGG 58.166 37.037 0.00 0.00 0.00 4.30
2431 2620 8.341173 GCATGTTGAGAGAAATAATTAGTGAGG 58.659 37.037 0.00 0.00 0.00 3.86
2432 2621 8.886719 TGCATGTTGAGAGAAATAATTAGTGAG 58.113 33.333 0.00 0.00 0.00 3.51
2433 2622 8.791327 TGCATGTTGAGAGAAATAATTAGTGA 57.209 30.769 0.00 0.00 0.00 3.41
2434 2623 9.499585 CTTGCATGTTGAGAGAAATAATTAGTG 57.500 33.333 0.00 0.00 0.00 2.74
2435 2624 8.186821 GCTTGCATGTTGAGAGAAATAATTAGT 58.813 33.333 1.14 0.00 0.00 2.24
2436 2625 8.186163 TGCTTGCATGTTGAGAGAAATAATTAG 58.814 33.333 1.14 0.00 0.00 1.73
2437 2626 8.054152 TGCTTGCATGTTGAGAGAAATAATTA 57.946 30.769 1.14 0.00 0.00 1.40
2438 2627 6.927416 TGCTTGCATGTTGAGAGAAATAATT 58.073 32.000 1.14 0.00 0.00 1.40
2439 2628 6.519679 TGCTTGCATGTTGAGAGAAATAAT 57.480 33.333 1.14 0.00 0.00 1.28
2440 2629 5.963176 TGCTTGCATGTTGAGAGAAATAA 57.037 34.783 1.14 0.00 0.00 1.40
2441 2630 5.886992 CATGCTTGCATGTTGAGAGAAATA 58.113 37.500 23.00 0.00 0.00 1.40
2442 2631 4.744570 CATGCTTGCATGTTGAGAGAAAT 58.255 39.130 23.00 0.00 0.00 2.17
2443 2632 4.168922 CATGCTTGCATGTTGAGAGAAA 57.831 40.909 23.00 0.00 0.00 2.52
2444 2633 3.842732 CATGCTTGCATGTTGAGAGAA 57.157 42.857 23.00 0.00 0.00 2.87
2457 2646 0.179181 GTGATGACGTGGCATGCTTG 60.179 55.000 18.92 10.10 0.00 4.01
2458 2647 0.606130 TGTGATGACGTGGCATGCTT 60.606 50.000 18.92 0.00 0.00 3.91
2459 2648 1.003476 TGTGATGACGTGGCATGCT 60.003 52.632 18.92 0.00 0.00 3.79
2460 2649 1.135315 GTGTGATGACGTGGCATGC 59.865 57.895 9.90 9.90 0.00 4.06
2461 2650 0.873721 TTGTGTGATGACGTGGCATG 59.126 50.000 4.87 4.87 0.00 4.06
2462 2651 0.874390 GTTGTGTGATGACGTGGCAT 59.126 50.000 0.00 0.00 0.00 4.40
2463 2652 0.462759 TGTTGTGTGATGACGTGGCA 60.463 50.000 0.00 0.00 0.00 4.92
2464 2653 0.874390 ATGTTGTGTGATGACGTGGC 59.126 50.000 0.00 0.00 0.00 5.01
2465 2654 1.872952 ACATGTTGTGTGATGACGTGG 59.127 47.619 0.00 0.00 40.28 4.94
2466 2655 4.926860 ATACATGTTGTGTGATGACGTG 57.073 40.909 2.30 0.00 42.24 4.49
2467 2656 6.394809 TCTTATACATGTTGTGTGATGACGT 58.605 36.000 2.30 0.00 42.24 4.34
2468 2657 6.885735 TCTTATACATGTTGTGTGATGACG 57.114 37.500 2.30 0.00 42.24 4.35
2469 2658 9.546909 CTTTTCTTATACATGTTGTGTGATGAC 57.453 33.333 2.30 0.00 42.24 3.06
2470 2659 8.729756 CCTTTTCTTATACATGTTGTGTGATGA 58.270 33.333 2.30 0.00 42.24 2.92
2471 2660 7.485913 GCCTTTTCTTATACATGTTGTGTGATG 59.514 37.037 2.30 0.00 42.24 3.07
2472 2661 7.176515 TGCCTTTTCTTATACATGTTGTGTGAT 59.823 33.333 2.30 0.00 42.24 3.06
2473 2662 6.488344 TGCCTTTTCTTATACATGTTGTGTGA 59.512 34.615 2.30 0.00 42.24 3.58
2474 2663 6.582295 GTGCCTTTTCTTATACATGTTGTGTG 59.418 38.462 2.30 0.00 42.24 3.82
2475 2664 6.264292 TGTGCCTTTTCTTATACATGTTGTGT 59.736 34.615 2.30 0.00 44.95 3.72
2476 2665 6.582295 GTGTGCCTTTTCTTATACATGTTGTG 59.418 38.462 2.30 0.00 0.00 3.33
2477 2666 6.490040 AGTGTGCCTTTTCTTATACATGTTGT 59.510 34.615 2.30 0.00 0.00 3.32
2478 2667 6.913170 AGTGTGCCTTTTCTTATACATGTTG 58.087 36.000 2.30 0.00 0.00 3.33
2479 2668 6.151144 GGAGTGTGCCTTTTCTTATACATGTT 59.849 38.462 2.30 0.00 0.00 2.71
2480 2669 5.648092 GGAGTGTGCCTTTTCTTATACATGT 59.352 40.000 2.69 2.69 0.00 3.21
2481 2670 5.066505 GGGAGTGTGCCTTTTCTTATACATG 59.933 44.000 0.00 0.00 0.00 3.21
2482 2671 5.193679 GGGAGTGTGCCTTTTCTTATACAT 58.806 41.667 0.00 0.00 0.00 2.29
2483 2672 4.042311 TGGGAGTGTGCCTTTTCTTATACA 59.958 41.667 0.00 0.00 0.00 2.29
2484 2673 4.395231 GTGGGAGTGTGCCTTTTCTTATAC 59.605 45.833 0.00 0.00 0.00 1.47
2485 2674 4.288626 AGTGGGAGTGTGCCTTTTCTTATA 59.711 41.667 0.00 0.00 0.00 0.98
2486 2675 3.074538 AGTGGGAGTGTGCCTTTTCTTAT 59.925 43.478 0.00 0.00 0.00 1.73
2487 2676 2.441750 AGTGGGAGTGTGCCTTTTCTTA 59.558 45.455 0.00 0.00 0.00 2.10
2488 2677 1.215423 AGTGGGAGTGTGCCTTTTCTT 59.785 47.619 0.00 0.00 0.00 2.52
2489 2678 0.846693 AGTGGGAGTGTGCCTTTTCT 59.153 50.000 0.00 0.00 0.00 2.52
2490 2679 2.561478 TAGTGGGAGTGTGCCTTTTC 57.439 50.000 0.00 0.00 0.00 2.29
2491 2680 2.375174 TGATAGTGGGAGTGTGCCTTTT 59.625 45.455 0.00 0.00 0.00 2.27
2492 2681 1.985159 TGATAGTGGGAGTGTGCCTTT 59.015 47.619 0.00 0.00 0.00 3.11
2493 2682 1.656587 TGATAGTGGGAGTGTGCCTT 58.343 50.000 0.00 0.00 0.00 4.35
2494 2683 1.885049 ATGATAGTGGGAGTGTGCCT 58.115 50.000 0.00 0.00 0.00 4.75
2495 2684 3.071602 ACATATGATAGTGGGAGTGTGCC 59.928 47.826 10.38 0.00 0.00 5.01
2496 2685 4.039730 AGACATATGATAGTGGGAGTGTGC 59.960 45.833 10.38 0.00 0.00 4.57
2497 2686 5.798125 AGACATATGATAGTGGGAGTGTG 57.202 43.478 10.38 0.00 0.00 3.82
2498 2687 6.814954 AAAGACATATGATAGTGGGAGTGT 57.185 37.500 10.38 0.00 0.00 3.55
2499 2688 9.046296 GTAAAAAGACATATGATAGTGGGAGTG 57.954 37.037 10.38 0.00 0.00 3.51
2500 2689 8.768397 TGTAAAAAGACATATGATAGTGGGAGT 58.232 33.333 10.38 0.00 0.00 3.85
2501 2690 9.784531 ATGTAAAAAGACATATGATAGTGGGAG 57.215 33.333 10.38 0.00 38.29 4.30
2502 2691 9.559732 CATGTAAAAAGACATATGATAGTGGGA 57.440 33.333 10.38 0.00 37.99 4.37
2503 2692 8.292448 GCATGTAAAAAGACATATGATAGTGGG 58.708 37.037 10.38 0.00 37.99 4.61
2504 2693 8.839343 TGCATGTAAAAAGACATATGATAGTGG 58.161 33.333 10.38 0.00 37.99 4.00
2510 2699 9.738832 CATGATTGCATGTAAAAAGACATATGA 57.261 29.630 10.38 0.00 45.41 2.15
2528 2717 4.440940 TTCATGATCAAGTGGCATGATTGC 60.441 41.667 0.00 0.00 45.33 3.56
2529 2718 4.911514 TCATGATCAAGTGGCATGATTG 57.088 40.909 0.00 4.69 42.31 2.67
2530 2719 5.925506 TTTCATGATCAAGTGGCATGATT 57.074 34.783 0.00 0.00 45.33 2.57
2531 2720 7.602753 CATATTTCATGATCAAGTGGCATGAT 58.397 34.615 0.00 3.31 45.33 2.45
2532 2721 6.516028 GCATATTTCATGATCAAGTGGCATGA 60.516 38.462 0.00 11.30 44.62 3.07
2533 2722 5.633601 GCATATTTCATGATCAAGTGGCATG 59.366 40.000 0.00 1.62 40.46 4.06
2534 2723 5.303333 TGCATATTTCATGATCAAGTGGCAT 59.697 36.000 0.00 0.00 0.00 4.40
2535 2724 4.645588 TGCATATTTCATGATCAAGTGGCA 59.354 37.500 0.00 0.00 0.00 4.92
2536 2725 5.190992 TGCATATTTCATGATCAAGTGGC 57.809 39.130 0.00 0.00 0.00 5.01
2537 2726 6.977213 TCATGCATATTTCATGATCAAGTGG 58.023 36.000 0.00 0.00 43.63 4.00
2538 2727 8.865590 TTTCATGCATATTTCATGATCAAGTG 57.134 30.769 14.69 0.00 46.54 3.16
2539 2728 9.878667 TTTTTCATGCATATTTCATGATCAAGT 57.121 25.926 14.69 0.00 46.54 3.16
2542 2731 9.524106 GTCTTTTTCATGCATATTTCATGATCA 57.476 29.630 14.69 0.00 46.54 2.92
2543 2732 9.524106 TGTCTTTTTCATGCATATTTCATGATC 57.476 29.630 14.69 0.00 46.54 2.92
2544 2733 9.309516 GTGTCTTTTTCATGCATATTTCATGAT 57.690 29.630 14.69 0.00 46.54 2.45
2545 2734 8.305317 TGTGTCTTTTTCATGCATATTTCATGA 58.695 29.630 0.00 11.45 45.91 3.07
2546 2735 8.468720 TGTGTCTTTTTCATGCATATTTCATG 57.531 30.769 0.00 7.93 41.87 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.