>input_sequence_75543
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--------------------------------------------------ATGGAGGGGGCGCCGAGGGCGGTGCCGTCC
CGGCGCGGCGGCGTCACGCTGGCGGAGCAGCTCGCCGCGTCCTCCAACCTCCGGGACCTTCTCAAGCTCCGCGACGACGA
CG------GCGAGGGCGACGGCGCGCGGCCCGCCAGGCGCCGCACGCTCCTCGACGTCATCCGCGGCCCCGAGGACGACG
CC---------GCTCCCCCCTCCTCCACGCGCGCCGCGGAGCCCG------------CGGTGA------CCGTGGCGGGA
GCGTTGCCGGGGGCGGCGTCGCCCGGGCAGGGGGAGGAGCGGCGGGTGTCGCTGATGGCGCTGCTGGAGCAGGCGGAGCG
GCAGTGGACGACGGCGGCGGCGCGCGCCGGGGCGTGGACGCGCGTGGACCAGGAAGCGGCGGCGGAG------GAGGGGG
AGGCGGGGAGCGGGAGGGGTGTGGGCGGGCGGTGCTGCGTGTGCATGGCGCGGCGCAAGGGCGCGGCCTTCGTCCCCTGC
GGCCACACCTTCTGCCGCGCCTGCGCCCGCGAGGTCCGCGCCGGCCGCGGCCGCTGCCCGCTCTGCAACGCCGCCATCCG
CGAGGTCCTCAACCTCTTCTGA----------------------------------------------------------
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>chr5A_1_TraesCS5A01G283800
TATGGACACATGGACTCTTGCCGGCCTTTGTGGCCGGCTTTAATGTTTAATTAATGTTTATTTTTAGGATTCACACGAAT
CTCAATGTAAAATCAATGACATATGACTTAGATGTGTAATACTTATGTCAAATCTAGATGTGTTTTAGCAAAACTGTTAT
TTTTATTTTTAAAATATTTGTGGGGTTTTTTCGCGCAACGTCGAAATGGGTCTGATCAGCGTTGGGCGTATGCGTCGATC
CAAACACGGAAGCGGACATTGATGTTTGTTGGACCGACTCAAACGGATAAAAATCTGACGGTAGAACGTGGCAGGCAGAT
CTCTCCGCGCGACCGGCCGCAAATCTGACGGCAAGCGCGAGGCAGATGGCTGCGATCGACGAGCTTGCGATCTACGCCGC
GGCACGTGGGAAAGCCGAGCAAAGGTCCTAGATCGCGGTCGCACTTTGAGAATCCACGTGACACGACATCCCGAGGTCCG
TCCGTCCCAAGACGCAGCTGCAACGTTTGACAAATGCTGCCGCCTCGTCCGTCCGGCAAACGGCAAACCACCACCCCGAG
CTCGGTCGCCGCGCCGCGCCAACCACACGATCCGGCGGCTA-----AACCGCTCGTCAGAACCGTGCCGACCCTACGGCC
AGCAGAACGGCGACGAAAGTCAG--------TCGCCGCTCGCGAGAGTCCGGACCCGACGCCGGAACCGTCCGCCGTCGC
CGCCCGACCGCGCGCGCGCAACTTGGCCATTTGGACGCAGAGAAGCGCGCTCGCTCCAACTGCACCGGACAATGGCCG--
-------------------------------------------------------ATCCAACCACAAGAGTCTACCTGGG
TACAGTACTG--TACTACTAGTACCAGCACTTATACTAGTCCAATACGAGGAGGAGTATTTAGGCGCGCGACTCGTGCTC
TTGTTACG-TACGGTGCGTGTGTGT-CCCGAGTGAGTCAGTCCACATACGCGTAGCGTGAGCTAGCGTGGCGTAGGGCG-
-CTCCTCCTGACCCGAGCGGCCTCGCGCGCGC--------------GCTGATGGAGGGGGCGCCGAGGGCGGTGCCGTCC
CGGCGCGGCGGCGTCACGCTGGCGGAGCAGCTCGCCGCGTCCTCCAACCTCCGGGACCTTCTCAAGCTCCGCGACGACGA
CG------GCGAGGGCGACGGCGCGCGGCCCGCCAGGCGCCGCACGCTCCTCGACGTCATCCGCGGCCCCGAGGACGACG
CC---------GCTCCCCCCTCCTCCACGCGCGCCGCGGAGCCCG------------CGGTGA------CCGTGGCGGGA
GCGTTGCCGGGGGCGGCGTCGCCCGGGCAGGGGGAGGAGCGGCGGGTGTCGCTGATGGCGCTGCTGGAGCAGGCGGAGCG
GCAGTGGACGACGGCGGCGGCGCGCGCCGGGGCGTGGACGCGCGTGGACCAGGAAGCGGCGGCGGAG------GAGGGGG
AGGCGGGGAGCGGGAGGGGTGTGGGCGGGCGGTGCTGCGTGTGCATGGCGCGGCGCAAGGGCGCGGCCTTCGTCCCCTGC
GGCCACACCTTCTGCCGCGCCTGCGCCCGCGAGGTCCGCGCCGGCCGCGGCCGCTGCCCGCTCTGCAACGCCGCCATCCG
CGAGGTCCTCAACCTCTTCTGACG--TGACGCCGGCGACCCGGCTCACATCCATCCATTGGCGCCCATTGGGAGACTGCT
A-----------------------------GCATCATTCGGTGTATAGAACTATAGACAAATCTCTCCCGTTGTTGATTT
CTTCTTCCTTCTTCGTACTAAGTAAC-------TACAAGTGAAAACATTGAATACAGTACTGCAT---CATTGTCAGTTC
ATCAATCTGCTCATCTACAAACATGCTGGATCGAATCCTCTGCAGTTAAGATGCTCGTACGATACGAACGCTCGATGGTA
TGGCATGGTACAGCACGCGCGGCATGGCCGTCCAGGGTGGTTGG-GGTCGATGCCATCATTAAGCTCGACTCGCCTAGCC
GTTTTCAGTGTCTTCTG-TCCAAACTTCAACGCGTCGGAAAAATCCACCCGTGGCGGCGGCGGCGTGATGTCACCGCCGG
AGAAGATAG---ATCGATAGGGAGGACTTGCGCCGCAGGCCAGCCATCTGTCCGGCCTGACCTGATGATGCCTTCGGCGG
TGATGTTGACCCGGTGGCTCGGCCCAACGGTGCCGTTGCGGCAAACGGCCAAAGTGTTGCTCTCGTCTCCTCTTCTGTTC
TCGTTCTCTTTACCGGTTGTGAAAGTTAAAGCGAAAGGTAAGCAACGCATCGTTGGCACTGGGTCACTGGGAGACGAGA-
--TAGATGGCGATAAAG---------CCAACTGCACTTGTGCTATTGGACGCAACATGTCTGCACACTCTGCCCACACCG
TACTTGCGTTAGATCTCGTTGGTTGGGTTGGTTGGGCTGGGTGGTAAGCTAACCTCACCATCACACGCACTATGGTAGAA
TCGTCTC-AAAAAAAAACCGCACTATGGTAATCTTTCAGAGTATATCTAAATAGCTAGCCCTCACTAATTATTTCTCTCA
ACATGCAAGCATGCCACGTCATCACACAACATGTATAAGAAAAGGCACACTCCCACTATCATATGTCTTTTTACATGCAA
TCATGCCACTTGATCATGAAATATGCATGAAAAAGACACAT
>chr5B_298
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---------------------------------------------------------ACGGTAAAACGCGGCAGGCAGAT
CTCTCCCCGCGACCGGCCGCAAATCTGACGGCAAGCGCGAGGCAGGTGACTGCGATCGACGAGCTTGCGATCTACGCCGC
GGCACGTGGGAAAGCCGAGCAAAGGTCCTAGATCGCGGTCGCACTTTCAGAATCCACGTGACATGATGTCCCGAGGTCCG
TTCGTTCCGAGA-GCAGCTGCAACGTTTGACAAATGCTGCTGCCTCGTCCGTCCGGCAAACGGCAAACCACCGCCCCGAG
CTCGGTCGCCGCGCCGCGCCAACCATACAATCCGGCGACTAAATTGAACCGCTCGTCAGAAACCTGCCGACCCTACGACC
AGCAGAACGGCGGCGAAAGTCAGCCCGTCAGTCGCCGCTCGCGAGAGCCCGGACCCGGCGCCGAAACCGTCCGCCGTCGC
CGCCCGACCGCGCGCGCGCAAGTTGGCCATTTGGATGCAGAGAAGCGCGCTCGCTCCAACTAGACCGGACAATGGCCGGC
ACAAAAACTATTCGCCAGCCCGGGCCGGGTCCAACT----------------CCAATCCAACCAGAAGAGTCTACCTGGG
TACAGTACAG--TACTA---GTACCAGTACTGG-ACTAGTCTAATACGAGGAG-AGTATTTAG----GCGACTCGTGCTC
TTGTTACGGTATGGTGCGTGTGTGTGCCCGAGTGAGTCAGTCCACATACGCGTAGCGTGAGCTAGCGTGGCGTAGGGCGC
TCTCGTCCTCCCGAGAGAGAGCGCGCGCG---------AAGGGAGGGCTGATGGAGGGGGCGCCGAGGGTGGTGCCGTCC
CGGCGCGGCGGCGTCACGCTGGCGGAGCAGCTCGCCGCGTCCTCCAACCTCCGGGACCTCCTCAAGCTCCGCGACGACGA
CGTTCAGGGCGAGGGCGACGGCGCCCGGCCCGCCAGGCGCCGCACGCTCCTCGACGTCATCCGCGGCCCCGAAGACGACG
CCGCTCCCCCGGCTCCCCCCTCCTCCACGCGCGCCGCGGAGCCCG------------CACCGACGGCGGCCGTGGCGGGA
GCGGTGCCGGGGGCGGCGTCGCCCGGGCAGGGGGAGGAGAGGCGGGTGTCGCTGATGGCGCTGCTGGAGCAGGCGGAGCG
GCAGTGGACGACGGCGGCGGCGCGCGCCGGGGCGTGGACGCGCGTGGACCAGGACGCGGCGGCGGAG------G---GGG
AGGAGGGGAGTGGGAGGGGCGTGGGCGGGCGGTGCTGCGTGTGCATGGCGCGGCGCAAGGGCGCGGCCTTCGTCCCCTGC
GGCCACACCTTCTGCCGCGCCTGCGCCCGCGAGGTCCGCGCCGGCCGCGGCCGCTGCCCGCTCTGCAACGCCGCCATCCG
CGAGGTCCTCAACCTCTTCTGAGTTCTGACGCCGACGGCCCGGCTCACATCCATCCATTGGCGGTGAATTGCCAGCAGGT
TCCAAGCCGTTCCGTCGATCGGAGACGGCGGCAGCATTCGGTGTATAGAACTATAGATAAATCTCCTCCGTTGTTGATTT
CTTCTTCCTTCTTCGTACTTACTCCTAGTACAATACAAGTGAAAACATTCAATACAGTACTGCAT---CATCGTGAATTC
ATCAATCTGTTCATCTACAAACATGCTGGATCGAATCCTCTGCAACTAAGATGCTTGTACGAAC----------------
--------TACAGCATGCGCGGCATGGCCATCCAAAGTGGTTGGAGGTGGATGCCATCATTAAGCTCGACTCGCCCGGCC
GTTACCAGTTTCCTCTGTTCAAAACTTCAACGCGTCGGAAAAATCCACCCGTGGCAGCGGCGGTGTGATGTCACCGCCGG
AGAAGATAG---ATCGATAGGGACGACTTGAGCCGCAGGCCAGCCATCTGTCTGGCCTGAC-----GATGCGTTCGGCGG
TGATGTTGACCCGGTGGCTCGGCCGAACGGTGCCGTTGGGGCAAACGTCCAAATTGTTGCTCTCTTCTCCTCTTATGTTC
ACCTTCTCTTTACCAATTGTGAAAGTTAAAAGCGAAAGGTAGCACCCCGTCGTTGCC-------------------AGA-
--TAGATGGTGATAAAGGGCTAAAGGCCATCTGCTCTTGTGCCATTGG-CGCAACATGCCTACACACTCTGCCCACATCG
TACTTGCGTTGGATCTCGTTGGTTGGGTGGTAAC-------TGGTAAGCTAACCCCACCATCACACGCAGTATTGTAG--
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>chr5D_298
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---------------------------------------------------------ACGGTAAAACGCGGCAGGCAGAT
CTCTCCCCGCGACCAGCCGCAAATCTGACG-----------GCAGGTGACTGCGATCGACGAGCTTGCGATCTACGCCGC
GGCACGTGGGAAAGCCGAGCAAAGGTCATAGATCGCGGTCGCACTTTCAGAATCCACGTGACATGACATCCCGAGGTCCG
TCCGTTCCGAGACGCAGCTGCAACGTTTGACAAATGCTGCA---TCGTCCGTCAGGCAAACGGCAAACCACCACCCCGAG
CTCGGTCGCCGCGCCGCGCCAACTATACAATCCGGCGACTAAATTGAACCGCTCGTCAGAAAC-TGCCGACCCTACGGCC
AGCAGAACGGCGGCGAAAGTCAGTCCGTCAGTCGCCGCTCGCGAGAGTCCGGACCGGACGCCGGAACCGTCCGCCGTCGC
CGCCCGACCGCGCGCGCGCAACTTGGCCATTTGGACGCAGAGAAGCGCGCACGCTCCAACTAGACCGGACAATGGCCGGC
ACAAAAACTATTCGCCAGCCCGGGCCGGGTCCAAGGCCTCGTCTCTCCAACCCCAGTCCAACCAGAAGAGTCTACCTGGG
TACAGTACTGACTACTA---GTACCAGTACTGG-ACTAGTCTAATACGAGGAGGAGTATTTAGGCGCGCGACTCGTGCTC
TTGTTACGGTACGGCGTCCACGAGCGAGCCAATCCACAA-TCCACATACGCGTAGCGTGAGCTAATGTGGCGTAGGGCGC
TCTCCTCCTGACCCGAGCGGCCGCGCGCGCGCCAACGCAAGGCGGGGCTGATGGAGGGGGCGCCGAGGGTGGTGCCGTCC
CGGCGCGGCGGCGTCACGCTGGCGGAGCAGCTCGCCGCGTCCTCCAACCTCCGCGACCTCCTCAAGCTCCGCGACGACGA
CGTTCAGGGCGACGGCGAGGGCGCGCGGCCCGCCAGGCGCCGCACGCTCCTCGACGTCATCCGCGGCCCCGAAGACGACG
CCGCTCCCCCGGCTCGCCCCTCATCCACGCGCGGCGGGGAGCCCGAAGCGACGGCCGCGGTGA------CCGTGGCGGCA
GCGGTGCCGGGGGCGGCGTCGCCCGGTCAGGGGGAGGAGAGGCGGGTGTCGCTGATGGCGCTGCTGGAGCAGGCCGAGCG
GCAGTGGACGACGGCGGCGGCGCGCGCCGGGGCGTGGACCCGCGTGGACCAGGACGCGGCGGCGGAGGAGGAGG---GGG
AGGCGGGGAGCGGGAGGGGCGTGGGCGGGCGGTGCTGCGTGTGCATGGCGCGGCGCAAGGGCGCGGCCTTCGTCCCCTGC
GGCCACACCTTCTGCCGCGCCTGCGCCCGCGAGGTCCGCGCCGGCCGCGGCCGCTGCCCGCTCTGCAACGCCGCCATCCG
CGAGGTCCTCAACCTCTTCTGACGCCGACGACCCGG---CCGGCTCACATCCATCCATTGCCGGTGAACTGCCAGCAGGT
TCCAAGCCGTTCCGTCGATCGGAGACGGCGGCAGCATTCGGTGTATAGATAGATA---AAATCTCATCCGTTGTTGATTT
TTTCTTCCTTCTTCGTACT------TAGTACAATACAAGTGAAAACATTCAATACCGTAGTACATCATCATCGTGAATTC
ATCAATCTGTTCATCTACAAACATGCTGGAACGAATCCTCTGCAATCAAGATGCTCGTACGAAC----------------
--------TACAGCATGCGCGGCATGGCCATCCAGAGTGGTTGGAGGTGGATGCCATCATTAAGCTCGACTCGCCCGGCC
GTTACCAGTTTCCTCGGTTCAAAACTTCAACGCGTCAGAAAAATCCACCCGTGGAGGCGGCGGTGTGATGTCACCGCCGG
AGAAGATAGTAGATAGATAGGGAGGACTTGCGCCGCAGGCCAGCCATCTGTCCGGG-----CTGATGATGCGTTCGGCGG
TGATGTTGACCCGGTGGCTCGGCCCAACGGTGCCGTTGCGGCAAACGGCCAAAGTGTTGCTCTCGTCTCCTCTTCTGTTC
GCCTTCTCTTTATCAATTGTGAAAGTTAAAAGCGAAAGGTAACAACCCGTCGTTGCC-------------------AGAT
AGTAGATGGTGATAAAGAGCTAAAGCCCATCTGCTCTAGTGCTATTGG-CGCAACATGCCTGCACACTCTGCCCACATCG
TACTTGCGTTAGATCTCGTTGGTT-------------TGGGTGGTAAGCTAACCTCACCATCACACGCACTATGGTAGTA
TTGTCTCAAAAAAAAAAACGCTCTATGGTAAT------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----S-----------
------S--------------------------------------S--S-------------------------------
-----------------------------------------------S---------------S----------------
-----S--S-------------------------------S---------------------------------------
-------------------------S--S--------S-----------------------S-S----------------
------------S-------------------------------------------------------------------
-------------------------------------------------------------SS-----------------
----------------------------------------------------------------S---------------
-----------------SSS-------S---SSS-------S--------------------------------------
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----------------------S----------------------------------------------S----------
-----------------------------------------------------------S--------------------
------------------------------------------------------------------------S-------
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---S-----------------------------------S----------------------------------------
------------------------------------------------------S-------------------SSS---
-------------------S------------------------------------------------------------
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-------------------------------------S-------------------------SSS-S-S-SSSS-S-S-
S--------------------------------S-----------------------S-------SS-------------
-------------------S-S-SSS-----------------------S---------------------S--S-S---
---------S----------------------------------S-----------------SSSSSSSSSSSSSSSSSS
SSSSSSSS-------S-------------S-----S------------S--------------------------SS---
---SS----S--S-------S------------------------------------------S----------------
-----------------------------------------------------------------------S--------
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S-S-----------SS--------------SSSS--S-SS------S-S------S-SSSSSSSSSSSSSSSSSSS----
---------S-------------------S----S-------------S---------S------------------S--
----------------------------S-SSSSSSS-----------------------------------------S-
-S---------------S---S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_263
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---ACACGGAAGCGGACATTGAT---------------------------------------------------------
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>reverse_1987
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------------------------------------------------------------------AACGCTCGATGGTA
TGGCAT--------------------------------------------------------------------------
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