Multiple sequence alignment - TraesCS5A01G281200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G281200 chr5A 100.000 2331 0 0 1 2331 490317502 490319832 0.000000e+00 4305
1 TraesCS5A01G281200 chr5A 98.969 194 2 0 2021 2214 336458854 336459047 4.770000e-92 348
2 TraesCS5A01G281200 chr5D 93.170 1186 70 7 845 2026 387628891 387630069 0.000000e+00 1731
3 TraesCS5A01G281200 chr5D 84.892 139 17 1 79 213 387626604 387626742 1.120000e-28 137
4 TraesCS5A01G281200 chr5B 91.558 616 36 12 845 1454 466001827 466002432 0.000000e+00 835
5 TraesCS5A01G281200 chr5B 81.619 593 74 25 222 798 65584375 65584948 2.110000e-125 459
6 TraesCS5A01G281200 chr5B 88.814 295 26 3 1739 2026 466002797 466003091 2.850000e-94 355
7 TraesCS5A01G281200 chr5B 94.340 212 8 2 1531 1738 466002455 466002666 2.890000e-84 322
8 TraesCS5A01G281200 chr5B 95.000 80 4 0 1 80 466001261 466001340 2.430000e-25 126
9 TraesCS5A01G281200 chr5B 96.923 65 2 0 1 65 696671418 696671354 2.450000e-20 110
10 TraesCS5A01G281200 chr4A 89.017 519 36 8 294 797 581937465 581936953 7.070000e-175 623
11 TraesCS5A01G281200 chr4D 87.146 529 34 10 297 797 19185732 19186254 9.350000e-159 569
12 TraesCS5A01G281200 chr3A 81.419 592 77 25 222 798 9492205 9492778 9.820000e-124 453
13 TraesCS5A01G281200 chr3A 99.476 191 1 0 2017 2207 38033839 38034029 4.770000e-92 348
14 TraesCS5A01G281200 chr7A 81.081 592 78 25 222 798 56187610 56188182 2.130000e-120 442
15 TraesCS5A01G281200 chr2B 89.939 328 31 2 471 798 314793990 314793665 2.770000e-114 422
16 TraesCS5A01G281200 chr2B 100.000 189 0 0 2019 2207 342298129 342298317 1.330000e-92 350
17 TraesCS5A01G281200 chr2B 98.964 193 2 0 2015 2207 7765651 7765459 1.710000e-91 346
18 TraesCS5A01G281200 chr2B 100.000 185 0 0 2023 2207 445679957 445679773 2.220000e-90 342
19 TraesCS5A01G281200 chr2B 83.951 162 9 4 222 371 314794140 314793984 3.120000e-29 139
20 TraesCS5A01G281200 chr3B 95.370 216 8 2 2010 2223 406616637 406616422 2.220000e-90 342
21 TraesCS5A01G281200 chr3B 98.413 189 2 1 2023 2210 279498507 279498319 4.800000e-87 331
22 TraesCS5A01G281200 chr3B 81.857 237 18 7 1 213 16827454 16827689 2.380000e-40 176
23 TraesCS5A01G281200 chr3B 97.368 76 2 0 1 76 53187806 53187731 1.880000e-26 130
24 TraesCS5A01G281200 chr3B 98.462 65 1 0 1 65 39163319 39163255 5.260000e-22 115
25 TraesCS5A01G281200 chr7B 95.775 213 5 3 2013 2222 588063727 588063938 7.980000e-90 340
26 TraesCS5A01G281200 chr7B 98.421 190 3 0 2028 2217 152481707 152481518 3.710000e-88 335
27 TraesCS5A01G281200 chr7B 85.263 285 34 4 515 798 541692418 541692141 1.050000e-73 287
28 TraesCS5A01G281200 chr7B 82.550 298 42 6 503 798 96529702 96529413 1.070000e-63 254
29 TraesCS5A01G281200 chr1D 82.353 255 39 6 540 791 418753131 418752880 1.400000e-52 217
30 TraesCS5A01G281200 chr1D 84.722 216 18 4 1 213 143316618 143316821 3.930000e-48 202
31 TraesCS5A01G281200 chr4B 80.769 234 22 4 3 213 294809337 294809570 6.670000e-36 161
32 TraesCS5A01G281200 chr4B 98.462 65 1 0 1 65 634537591 634537655 5.260000e-22 115
33 TraesCS5A01G281200 chr4B 93.421 76 5 0 1 76 396968965 396969040 1.890000e-21 113
34 TraesCS5A01G281200 chr6B 94.737 76 4 0 1 76 427228037 427228112 4.070000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G281200 chr5A 490317502 490319832 2330 False 4305.0 4305 100.000 1 2331 1 chr5A.!!$F2 2330
1 TraesCS5A01G281200 chr5D 387626604 387630069 3465 False 934.0 1731 89.031 79 2026 2 chr5D.!!$F1 1947
2 TraesCS5A01G281200 chr5B 65584375 65584948 573 False 459.0 459 81.619 222 798 1 chr5B.!!$F1 576
3 TraesCS5A01G281200 chr5B 466001261 466003091 1830 False 409.5 835 92.428 1 2026 4 chr5B.!!$F2 2025
4 TraesCS5A01G281200 chr4A 581936953 581937465 512 True 623.0 623 89.017 294 797 1 chr4A.!!$R1 503
5 TraesCS5A01G281200 chr4D 19185732 19186254 522 False 569.0 569 87.146 297 797 1 chr4D.!!$F1 500
6 TraesCS5A01G281200 chr3A 9492205 9492778 573 False 453.0 453 81.419 222 798 1 chr3A.!!$F1 576
7 TraesCS5A01G281200 chr7A 56187610 56188182 572 False 442.0 442 81.081 222 798 1 chr7A.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 2626 0.307453 GAACACAGCGTGCATGTTGA 59.693 50.0 27.01 0.0 36.7 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 4176 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.8 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.220477 GCAGCACCCCTCTCTTCTC 59.780 63.158 0.00 0.00 0.00 2.87
32 33 1.545706 GCACCCCTCTCTTCTCCGTT 61.546 60.000 0.00 0.00 0.00 4.44
54 55 2.359994 GGTGATTCCTCCCCAGGTACTA 60.360 54.545 0.00 0.00 41.28 1.82
76 77 0.461961 ACCCTAGCTGTTCGATCTGC 59.538 55.000 15.27 15.27 0.00 4.26
98 106 3.615224 TGTGCATGCTGATCTGAAGTA 57.385 42.857 20.33 0.00 0.00 2.24
107 115 3.610242 GCTGATCTGAAGTACTGTTCGTG 59.390 47.826 3.42 0.00 0.00 4.35
110 118 2.739292 TCTGAAGTACTGTTCGTGTGC 58.261 47.619 0.00 0.00 0.00 4.57
112 120 0.782384 GAAGTACTGTTCGTGTGCGG 59.218 55.000 0.00 0.00 38.89 5.69
142 150 1.006086 TGCGATGGCTCGTGTTTATG 58.994 50.000 0.15 0.00 46.71 1.90
145 153 0.663153 GATGGCTCGTGTTTATGCCC 59.337 55.000 0.00 0.00 44.32 5.36
151 163 3.493699 GGCTCGTGTTTATGCCCTGTATA 60.494 47.826 0.00 0.00 39.49 1.47
164 176 4.141505 TGCCCTGTATAGCATGCTTCTTTA 60.142 41.667 28.02 7.69 33.08 1.85
166 178 5.106396 GCCCTGTATAGCATGCTTCTTTATG 60.106 44.000 28.02 11.39 0.00 1.90
174 186 8.696043 ATAGCATGCTTCTTTATGATTGGTTA 57.304 30.769 28.02 0.75 0.00 2.85
184 196 5.818136 TTATGATTGGTTAGCTGCAGTTC 57.182 39.130 16.64 0.00 0.00 3.01
185 197 2.436417 TGATTGGTTAGCTGCAGTTCC 58.564 47.619 16.64 8.48 0.00 3.62
186 198 1.398390 GATTGGTTAGCTGCAGTTCCG 59.602 52.381 16.64 0.00 0.00 4.30
192 204 0.898326 TAGCTGCAGTTCCGAGGACA 60.898 55.000 16.64 0.00 0.00 4.02
197 209 1.621317 TGCAGTTCCGAGGACAACATA 59.379 47.619 0.00 0.00 0.00 2.29
198 210 2.000447 GCAGTTCCGAGGACAACATAC 59.000 52.381 0.00 0.00 0.00 2.39
213 225 5.581605 ACAACATACTTCAGTTTTGTGCAG 58.418 37.500 0.00 0.00 0.00 4.41
214 226 4.228912 ACATACTTCAGTTTTGTGCAGC 57.771 40.909 0.00 0.00 0.00 5.25
215 227 3.228749 CATACTTCAGTTTTGTGCAGCG 58.771 45.455 0.00 0.00 0.00 5.18
217 229 0.936297 CTTCAGTTTTGTGCAGCGCC 60.936 55.000 2.29 0.00 0.00 6.53
219 231 1.659335 CAGTTTTGTGCAGCGCCTG 60.659 57.895 2.29 2.69 34.12 4.85
220 232 1.823470 AGTTTTGTGCAGCGCCTGA 60.823 52.632 2.29 0.00 32.44 3.86
257 681 4.008933 CCTCGATCCCGCCCATCC 62.009 72.222 0.00 0.00 35.37 3.51
259 683 4.870618 TCGATCCCGCCCATCCCA 62.871 66.667 0.00 0.00 35.37 4.37
290 714 3.866582 CCACCCGCTCCCCATCTC 61.867 72.222 0.00 0.00 0.00 2.75
291 715 4.227134 CACCCGCTCCCCATCTCG 62.227 72.222 0.00 0.00 0.00 4.04
304 728 1.415659 CCATCTCGCCCATCTTCTTCT 59.584 52.381 0.00 0.00 0.00 2.85
305 729 2.158842 CCATCTCGCCCATCTTCTTCTT 60.159 50.000 0.00 0.00 0.00 2.52
307 731 1.482593 TCTCGCCCATCTTCTTCTTCC 59.517 52.381 0.00 0.00 0.00 3.46
308 732 1.208052 CTCGCCCATCTTCTTCTTCCA 59.792 52.381 0.00 0.00 0.00 3.53
341 799 3.118075 CCCTTCCTCTTCCATCTTCTTCC 60.118 52.174 0.00 0.00 0.00 3.46
362 850 1.309102 CCTTCCCTGGATCCCCCTT 60.309 63.158 9.90 0.00 35.38 3.95
377 865 6.897966 GGATCCCCCTTTTTCTCTTCTTTATT 59.102 38.462 0.00 0.00 0.00 1.40
415 917 3.847184 CCCCTTCTAAGTTCCTCCTCTTT 59.153 47.826 0.00 0.00 0.00 2.52
417 919 4.780554 CCCTTCTAAGTTCCTCCTCTTTCT 59.219 45.833 0.00 0.00 0.00 2.52
504 2320 5.358922 CAGGGTGTGCAAATATTATTTGGG 58.641 41.667 23.79 6.68 0.00 4.12
511 2327 4.339814 TGCAAATATTATTTGGGGTCGTCC 59.660 41.667 23.79 10.16 0.00 4.79
658 2477 6.310224 CCGAACATGATTTGGTATTGAAAACC 59.690 38.462 0.00 0.00 37.53 3.27
726 2546 8.554835 TGAATTCGTATTCAAGTCCATTACAA 57.445 30.769 14.23 0.00 45.38 2.41
746 2566 4.528206 ACAATTTCCTCCCTGAATTGGAAC 59.472 41.667 11.35 0.00 42.27 3.62
780 2600 5.680619 TCAATACGGAAGCCTTCAATACAT 58.319 37.500 6.80 0.00 0.00 2.29
798 2618 1.324435 CATACATCCGAACACAGCGTG 59.676 52.381 7.07 7.07 39.75 5.34
799 2619 1.011968 TACATCCGAACACAGCGTGC 61.012 55.000 8.31 0.00 36.98 5.34
800 2620 2.030412 ATCCGAACACAGCGTGCA 59.970 55.556 8.31 0.00 36.98 4.57
801 2621 1.375908 ATCCGAACACAGCGTGCAT 60.376 52.632 8.31 0.00 36.98 3.96
802 2622 1.638388 ATCCGAACACAGCGTGCATG 61.638 55.000 0.09 0.09 36.98 4.06
803 2623 2.606961 CCGAACACAGCGTGCATGT 61.607 57.895 7.93 0.00 36.98 3.21
804 2624 1.279539 CGAACACAGCGTGCATGTT 59.720 52.632 7.93 12.53 39.23 2.71
805 2625 0.993251 CGAACACAGCGTGCATGTTG 60.993 55.000 19.87 19.87 36.70 3.33
806 2626 0.307453 GAACACAGCGTGCATGTTGA 59.693 50.000 27.01 0.00 36.70 3.18
807 2627 0.308684 AACACAGCGTGCATGTTGAG 59.691 50.000 27.01 21.52 36.98 3.02
808 2628 1.441515 CACAGCGTGCATGTTGAGC 60.442 57.895 27.01 9.08 0.00 4.26
809 2629 1.893335 ACAGCGTGCATGTTGAGCA 60.893 52.632 27.01 0.00 40.19 4.26
810 2630 1.239296 ACAGCGTGCATGTTGAGCAT 61.239 50.000 27.01 3.87 44.79 3.79
828 2648 4.488518 GCATGATTTGCGTGTAATGTTG 57.511 40.909 0.00 0.00 42.54 3.33
830 2650 4.385447 GCATGATTTGCGTGTAATGTTGTT 59.615 37.500 0.00 0.00 42.54 2.83
852 2672 5.596836 TTTAGGGAAATCATGGTGAATGC 57.403 39.130 0.00 0.00 36.11 3.56
854 2674 3.294214 AGGGAAATCATGGTGAATGCTC 58.706 45.455 0.00 0.00 36.11 4.26
855 2675 2.363359 GGGAAATCATGGTGAATGCTCC 59.637 50.000 0.00 0.00 36.11 4.70
857 2677 3.067742 GGAAATCATGGTGAATGCTCCTG 59.932 47.826 0.00 0.00 36.11 3.86
874 2735 8.757982 ATGCTCCTGATGATTTTGTAACTTAT 57.242 30.769 0.00 0.00 0.00 1.73
889 2750 3.386768 ACTTATGCGTGTCTGTTGAGT 57.613 42.857 0.00 0.00 0.00 3.41
926 2787 5.255397 TCCATGGTTAACATCTGGAAACT 57.745 39.130 12.58 0.00 35.76 2.66
927 2788 5.640147 TCCATGGTTAACATCTGGAAACTT 58.360 37.500 12.58 0.00 35.76 2.66
931 2792 7.339212 CCATGGTTAACATCTGGAAACTTGATA 59.661 37.037 8.10 0.00 37.84 2.15
932 2793 8.739039 CATGGTTAACATCTGGAAACTTGATAA 58.261 33.333 8.10 0.00 37.84 1.75
933 2794 8.106247 TGGTTAACATCTGGAAACTTGATAAC 57.894 34.615 8.10 0.00 0.00 1.89
970 2832 4.652822 ACTATTCACCCCTTTTGTCTGAC 58.347 43.478 0.00 0.00 0.00 3.51
978 2840 2.561569 CCTTTTGTCTGACGACCTTGT 58.438 47.619 2.98 0.00 39.47 3.16
984 2846 1.993370 GTCTGACGACCTTGTGTATGC 59.007 52.381 0.00 0.00 33.98 3.14
1214 3076 2.039084 AGAACCAAGACAAGTAGGGCAG 59.961 50.000 0.00 0.00 0.00 4.85
1510 3373 5.528690 TGTTTCAGAACATGTCTTTGAGAGG 59.471 40.000 0.00 0.00 40.71 3.69
1513 3376 3.677121 CAGAACATGTCTTTGAGAGGTCG 59.323 47.826 0.00 0.00 32.70 4.79
1528 3391 4.287552 AGAGGTCGACTGGTATTGGTATT 58.712 43.478 16.46 0.00 0.00 1.89
1551 3415 4.229876 GTTGCTTGAAATCCTTGCTGTAC 58.770 43.478 0.00 0.00 0.00 2.90
1642 3507 4.236935 GAGCTTCTGAGAACTGAGTTCAG 58.763 47.826 25.45 16.52 44.11 3.02
1686 3551 1.004161 TGATGAGTTTTGCCGGGATGA 59.996 47.619 2.18 0.00 0.00 2.92
1697 3562 1.947678 GCCGGGATGATGATTGGCTAG 60.948 57.143 2.18 0.00 39.38 3.42
1705 3570 6.266103 GGGATGATGATTGGCTAGAATTTGAA 59.734 38.462 0.00 0.00 0.00 2.69
1739 3607 4.429505 TGGAGGAGGAAGATGAAGAGAAA 58.570 43.478 0.00 0.00 0.00 2.52
1787 3785 7.285629 TGGTAAAACATCCATCAGTAAAACACA 59.714 33.333 0.00 0.00 0.00 3.72
1796 3794 2.171659 TCAGTAAAACACACTGGCCTCA 59.828 45.455 3.32 0.00 42.98 3.86
1801 3799 2.770164 AACACACTGGCCTCATCTAC 57.230 50.000 3.32 0.00 0.00 2.59
1818 3816 6.749139 TCATCTACTATCGTTCATTTCCTGG 58.251 40.000 0.00 0.00 0.00 4.45
1865 3870 1.361668 ATCTTGCGTAACAGCCAGCG 61.362 55.000 0.00 0.00 36.02 5.18
1887 3892 2.035066 CCTGCTCCTTTTCACCACTTTG 59.965 50.000 0.00 0.00 0.00 2.77
1913 3918 6.591448 TCTGTCTACATGAAACATTAGCACAG 59.409 38.462 0.00 6.02 0.00 3.66
1929 3935 9.409312 CATTAGCACAGTTTCACATCATAAAAA 57.591 29.630 0.00 0.00 0.00 1.94
1993 3999 4.277174 ACGGCTATCAAATTTCACACAACA 59.723 37.500 0.00 0.00 0.00 3.33
1994 4000 4.616802 CGGCTATCAAATTTCACACAACAC 59.383 41.667 0.00 0.00 0.00 3.32
2014 4020 2.238646 ACTCGTTGGCCCATTCTGATAA 59.761 45.455 0.00 0.00 0.00 1.75
2026 4032 8.210265 GGCCCATTCTGATAATTTGGAAATAAA 58.790 33.333 0.00 0.00 0.00 1.40
2027 4033 9.612066 GCCCATTCTGATAATTTGGAAATAAAA 57.388 29.630 0.00 0.00 0.00 1.52
2048 4054 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2049 4055 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2050 4056 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2051 4057 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2052 4058 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2058 4064 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2059 4065 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2060 4066 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2061 4067 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2064 4070 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2076 4082 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2077 4083 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2078 4084 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2079 4085 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2080 4086 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2081 4087 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2082 4088 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2083 4089 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2084 4090 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2085 4091 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2086 4092 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2087 4093 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2088 4094 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2089 4095 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2090 4096 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2091 4097 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2092 4098 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2093 4099 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2094 4100 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2104 4110 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
2105 4111 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
2106 4112 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
2107 4113 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
2108 4114 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
2109 4115 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
2110 4116 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
2111 4117 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
2112 4118 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
2113 4119 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
2114 4120 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
2115 4121 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
2116 4122 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
2117 4123 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
2118 4124 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
2119 4125 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2120 4126 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2121 4127 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2122 4128 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2123 4129 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2124 4130 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2125 4131 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2126 4132 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
2127 4133 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
2128 4134 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
2129 4135 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
2130 4136 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
2142 4148 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
2143 4149 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
2144 4150 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
2145 4151 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
2146 4152 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
2147 4153 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
2148 4154 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
2149 4155 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
2150 4156 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
2151 4157 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
2152 4158 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
2153 4159 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
2154 4160 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
2155 4161 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
2156 4162 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
2157 4163 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
2158 4164 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
2159 4165 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
2160 4166 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
2161 4167 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
2162 4168 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2163 4169 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2175 4181 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2176 4182 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2177 4183 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2178 4184 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2179 4185 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2180 4186 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2181 4187 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2182 4188 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2183 4189 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2184 4190 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2185 4191 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2186 4192 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2187 4193 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2188 4194 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2189 4195 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2190 4196 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2194 4200 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2195 4201 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2196 4202 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2197 4203 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2198 4204 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2199 4205 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2200 4206 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2201 4207 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2218 4224 5.481615 AGGCTCCCCTTTATAATTTGGAA 57.518 39.130 0.00 0.00 38.74 3.53
2219 4225 5.849140 AGGCTCCCCTTTATAATTTGGAAA 58.151 37.500 0.00 0.00 38.74 3.13
2220 4226 6.452594 AGGCTCCCCTTTATAATTTGGAAAT 58.547 36.000 0.00 0.00 38.74 2.17
2221 4227 7.601017 AGGCTCCCCTTTATAATTTGGAAATA 58.399 34.615 0.00 0.00 38.74 1.40
2222 4228 8.071229 AGGCTCCCCTTTATAATTTGGAAATAA 58.929 33.333 0.00 0.00 38.74 1.40
2223 4229 8.148351 GGCTCCCCTTTATAATTTGGAAATAAC 58.852 37.037 0.00 0.00 0.00 1.89
2224 4230 7.865889 GCTCCCCTTTATAATTTGGAAATAACG 59.134 37.037 0.00 0.00 0.00 3.18
2225 4231 7.718525 TCCCCTTTATAATTTGGAAATAACGC 58.281 34.615 0.00 0.00 0.00 4.84
2226 4232 7.342284 TCCCCTTTATAATTTGGAAATAACGCA 59.658 33.333 0.00 0.00 0.00 5.24
2227 4233 8.147704 CCCCTTTATAATTTGGAAATAACGCAT 58.852 33.333 0.00 0.00 0.00 4.73
2228 4234 9.191995 CCCTTTATAATTTGGAAATAACGCATC 57.808 33.333 0.00 0.00 0.00 3.91
2229 4235 9.743057 CCTTTATAATTTGGAAATAACGCATCA 57.257 29.630 0.00 0.00 0.00 3.07
2236 4242 9.814899 AATTTGGAAATAACGCATCATAATTCA 57.185 25.926 0.00 0.00 0.00 2.57
2237 4243 9.985730 ATTTGGAAATAACGCATCATAATTCAT 57.014 25.926 0.00 0.00 0.00 2.57
2247 4253 9.800433 AACGCATCATAATTCATAAACAATTCA 57.200 25.926 0.00 0.00 0.00 2.57
2248 4254 9.236691 ACGCATCATAATTCATAAACAATTCAC 57.763 29.630 0.00 0.00 0.00 3.18
2249 4255 9.454585 CGCATCATAATTCATAAACAATTCACT 57.545 29.630 0.00 0.00 0.00 3.41
2255 4261 9.941325 ATAATTCATAAACAATTCACTTTGGCA 57.059 25.926 0.00 0.00 0.00 4.92
2256 4262 8.851541 AATTCATAAACAATTCACTTTGGCAT 57.148 26.923 0.00 0.00 0.00 4.40
2257 4263 7.655236 TTCATAAACAATTCACTTTGGCATG 57.345 32.000 0.00 0.00 0.00 4.06
2258 4264 6.990798 TCATAAACAATTCACTTTGGCATGA 58.009 32.000 0.00 0.00 0.00 3.07
2259 4265 7.613585 TCATAAACAATTCACTTTGGCATGAT 58.386 30.769 0.00 0.00 0.00 2.45
2260 4266 8.095792 TCATAAACAATTCACTTTGGCATGATT 58.904 29.630 0.00 0.00 0.00 2.57
2261 4267 6.790285 AAACAATTCACTTTGGCATGATTC 57.210 33.333 0.00 0.00 0.00 2.52
2262 4268 5.471556 ACAATTCACTTTGGCATGATTCA 57.528 34.783 0.00 0.00 0.00 2.57
2263 4269 5.856156 ACAATTCACTTTGGCATGATTCAA 58.144 33.333 0.00 0.00 0.00 2.69
2264 4270 5.697633 ACAATTCACTTTGGCATGATTCAAC 59.302 36.000 0.00 0.00 0.00 3.18
2265 4271 4.933505 TTCACTTTGGCATGATTCAACA 57.066 36.364 0.00 0.00 0.00 3.33
2266 4272 5.471556 TTCACTTTGGCATGATTCAACAT 57.528 34.783 0.00 0.00 0.00 2.71
2267 4273 5.471556 TCACTTTGGCATGATTCAACATT 57.528 34.783 0.00 0.00 0.00 2.71
2268 4274 5.231702 TCACTTTGGCATGATTCAACATTG 58.768 37.500 0.00 0.00 0.00 2.82
2269 4275 3.998341 ACTTTGGCATGATTCAACATTGC 59.002 39.130 0.00 2.07 0.00 3.56
2270 4276 3.679824 TTGGCATGATTCAACATTGCA 57.320 38.095 11.05 0.00 0.00 4.08
2271 4277 2.962125 TGGCATGATTCAACATTGCAC 58.038 42.857 11.05 3.16 0.00 4.57
2272 4278 1.921887 GGCATGATTCAACATTGCACG 59.078 47.619 11.05 0.00 0.00 5.34
2273 4279 2.598589 GCATGATTCAACATTGCACGT 58.401 42.857 0.00 0.00 0.00 4.49
2274 4280 2.988493 GCATGATTCAACATTGCACGTT 59.012 40.909 0.00 0.00 0.00 3.99
2275 4281 3.181538 GCATGATTCAACATTGCACGTTG 60.182 43.478 18.09 18.09 44.11 4.10
2276 4282 2.392821 TGATTCAACATTGCACGTTGC 58.607 42.857 18.99 9.27 42.78 4.17
2277 4283 2.034432 TGATTCAACATTGCACGTTGCT 59.966 40.909 18.99 11.20 45.31 3.91
2278 4284 3.251972 TGATTCAACATTGCACGTTGCTA 59.748 39.130 18.99 11.95 45.31 3.49
2279 4285 3.699779 TTCAACATTGCACGTTGCTAA 57.300 38.095 18.99 9.64 45.31 3.09
2280 4286 3.913548 TCAACATTGCACGTTGCTAAT 57.086 38.095 18.99 6.66 45.31 1.73
2281 4287 4.235939 TCAACATTGCACGTTGCTAATT 57.764 36.364 18.99 0.00 45.31 1.40
2282 4288 5.363979 TCAACATTGCACGTTGCTAATTA 57.636 34.783 18.99 3.10 45.31 1.40
2283 4289 5.389778 TCAACATTGCACGTTGCTAATTAG 58.610 37.500 18.99 8.20 45.31 1.73
2284 4290 4.355543 ACATTGCACGTTGCTAATTAGG 57.644 40.909 14.28 0.13 45.31 2.69
2285 4291 2.911819 TTGCACGTTGCTAATTAGGC 57.088 45.000 14.28 8.17 45.31 3.93
2286 4292 1.814793 TGCACGTTGCTAATTAGGCA 58.185 45.000 14.28 10.54 45.31 4.75
2287 4293 2.364632 TGCACGTTGCTAATTAGGCAT 58.635 42.857 14.28 0.00 45.31 4.40
2288 4294 2.354510 TGCACGTTGCTAATTAGGCATC 59.645 45.455 14.28 10.10 45.31 3.91
2289 4295 2.614057 GCACGTTGCTAATTAGGCATCT 59.386 45.455 14.28 1.43 40.96 2.90
2290 4296 3.807622 GCACGTTGCTAATTAGGCATCTA 59.192 43.478 14.28 0.00 40.96 1.98
2291 4297 4.272504 GCACGTTGCTAATTAGGCATCTAA 59.727 41.667 14.28 0.00 40.96 2.10
2292 4298 5.220777 GCACGTTGCTAATTAGGCATCTAAA 60.221 40.000 14.28 0.00 40.96 1.85
2293 4299 6.513393 GCACGTTGCTAATTAGGCATCTAAAT 60.513 38.462 14.28 0.00 40.96 1.40
2294 4300 6.852853 CACGTTGCTAATTAGGCATCTAAATG 59.147 38.462 14.28 5.72 38.77 2.32
2295 4301 6.542370 ACGTTGCTAATTAGGCATCTAAATGT 59.458 34.615 14.28 6.22 38.77 2.71
2296 4302 7.067008 ACGTTGCTAATTAGGCATCTAAATGTT 59.933 33.333 14.28 0.00 38.77 2.71
2297 4303 8.556194 CGTTGCTAATTAGGCATCTAAATGTTA 58.444 33.333 14.28 0.00 38.77 2.41
2308 4314 9.599866 AGGCATCTAAATGTTATTTTAAAAGGC 57.400 29.630 6.79 0.82 35.18 4.35
2309 4315 9.377312 GGCATCTAAATGTTATTTTAAAAGGCA 57.623 29.630 6.79 5.71 35.18 4.75
2325 4331 9.906660 TTTAAAAGGCATATAAGTGTTCAACAG 57.093 29.630 0.00 0.00 0.00 3.16
2326 4332 5.567138 AAGGCATATAAGTGTTCAACAGC 57.433 39.130 0.00 0.00 0.00 4.40
2327 4333 4.588899 AGGCATATAAGTGTTCAACAGCA 58.411 39.130 0.00 0.00 0.00 4.41
2328 4334 5.195940 AGGCATATAAGTGTTCAACAGCAT 58.804 37.500 0.00 0.00 0.00 3.79
2329 4335 5.066893 AGGCATATAAGTGTTCAACAGCATG 59.933 40.000 0.00 0.00 46.00 4.06
2330 4336 5.276270 GCATATAAGTGTTCAACAGCATGG 58.724 41.667 0.00 0.00 43.62 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.077716 GGGGAGGAATCACCAACGG 60.078 63.158 0.00 0.00 42.04 4.44
32 33 0.419865 TACCTGGGGAGGAATCACCA 59.580 55.000 0.00 0.00 42.04 4.17
54 55 3.243907 GCAGATCGAACAGCTAGGGTTAT 60.244 47.826 2.74 0.00 0.00 1.89
76 77 2.747989 ACTTCAGATCAGCATGCACAAG 59.252 45.455 21.98 12.04 34.76 3.16
98 106 1.022451 ACAAACCGCACACGAACAGT 61.022 50.000 0.00 0.00 43.93 3.55
107 115 0.724453 CGCATACACACAAACCGCAC 60.724 55.000 0.00 0.00 0.00 5.34
110 118 1.202020 CCATCGCATACACACAAACCG 60.202 52.381 0.00 0.00 0.00 4.44
112 120 1.468520 AGCCATCGCATACACACAAAC 59.531 47.619 0.00 0.00 37.52 2.93
142 150 2.557920 AGAAGCATGCTATACAGGGC 57.442 50.000 23.00 3.37 33.80 5.19
145 153 8.235226 CCAATCATAAAGAAGCATGCTATACAG 58.765 37.037 23.00 8.30 0.00 2.74
151 163 5.927281 AACCAATCATAAAGAAGCATGCT 57.073 34.783 16.30 16.30 0.00 3.79
164 176 3.019564 GGAACTGCAGCTAACCAATCAT 58.980 45.455 15.27 0.00 0.00 2.45
166 178 1.398390 CGGAACTGCAGCTAACCAATC 59.602 52.381 15.27 0.00 0.00 2.67
174 186 1.758440 TTGTCCTCGGAACTGCAGCT 61.758 55.000 15.27 0.00 0.00 4.24
184 196 3.594603 ACTGAAGTATGTTGTCCTCGG 57.405 47.619 0.00 0.00 0.00 4.63
185 197 5.236478 ACAAAACTGAAGTATGTTGTCCTCG 59.764 40.000 2.79 0.00 0.00 4.63
186 198 6.430451 CACAAAACTGAAGTATGTTGTCCTC 58.570 40.000 4.84 0.00 30.32 3.71
192 204 4.610945 GCTGCACAAAACTGAAGTATGTT 58.389 39.130 0.00 0.00 0.00 2.71
197 209 0.248621 GCGCTGCACAAAACTGAAGT 60.249 50.000 0.00 0.00 0.00 3.01
198 210 0.936297 GGCGCTGCACAAAACTGAAG 60.936 55.000 7.64 0.00 0.00 3.02
213 225 2.250237 GCCAGCTAGATTCAGGCGC 61.250 63.158 0.00 0.00 35.42 6.53
214 226 1.596477 GGCCAGCTAGATTCAGGCG 60.596 63.158 0.00 0.00 46.12 5.52
215 227 1.596477 CGGCCAGCTAGATTCAGGC 60.596 63.158 2.24 0.00 44.48 4.85
217 229 1.596477 GCCGGCCAGCTAGATTCAG 60.596 63.158 18.11 0.00 0.00 3.02
219 231 2.663188 CGCCGGCCAGCTAGATTC 60.663 66.667 23.46 0.00 0.00 2.52
220 232 4.918201 GCGCCGGCCAGCTAGATT 62.918 66.667 23.46 0.00 0.00 2.40
244 668 3.171388 AGTGGGATGGGCGGGATC 61.171 66.667 0.00 0.00 0.00 3.36
279 703 3.543536 GATGGGCGAGATGGGGAGC 62.544 68.421 0.00 0.00 0.00 4.70
280 704 1.414061 AAGATGGGCGAGATGGGGAG 61.414 60.000 0.00 0.00 0.00 4.30
281 705 1.384502 AAGATGGGCGAGATGGGGA 60.385 57.895 0.00 0.00 0.00 4.81
282 706 1.072159 GAAGATGGGCGAGATGGGG 59.928 63.158 0.00 0.00 0.00 4.96
283 707 0.471617 AAGAAGATGGGCGAGATGGG 59.528 55.000 0.00 0.00 0.00 4.00
284 708 1.415659 AGAAGAAGATGGGCGAGATGG 59.584 52.381 0.00 0.00 0.00 3.51
285 709 2.906691 AGAAGAAGATGGGCGAGATG 57.093 50.000 0.00 0.00 0.00 2.90
286 710 2.103941 GGAAGAAGAAGATGGGCGAGAT 59.896 50.000 0.00 0.00 0.00 2.75
287 711 1.482593 GGAAGAAGAAGATGGGCGAGA 59.517 52.381 0.00 0.00 0.00 4.04
288 712 1.208052 TGGAAGAAGAAGATGGGCGAG 59.792 52.381 0.00 0.00 0.00 5.03
289 713 1.066143 GTGGAAGAAGAAGATGGGCGA 60.066 52.381 0.00 0.00 0.00 5.54
290 714 1.339055 TGTGGAAGAAGAAGATGGGCG 60.339 52.381 0.00 0.00 0.00 6.13
291 715 2.496899 TGTGGAAGAAGAAGATGGGC 57.503 50.000 0.00 0.00 0.00 5.36
292 716 4.500499 AGATGTGGAAGAAGAAGATGGG 57.500 45.455 0.00 0.00 0.00 4.00
304 728 2.308866 GGAAGGGGAAGAAGATGTGGAA 59.691 50.000 0.00 0.00 0.00 3.53
305 729 1.916181 GGAAGGGGAAGAAGATGTGGA 59.084 52.381 0.00 0.00 0.00 4.02
307 731 2.843113 AGAGGAAGGGGAAGAAGATGTG 59.157 50.000 0.00 0.00 0.00 3.21
308 732 3.213160 AGAGGAAGGGGAAGAAGATGT 57.787 47.619 0.00 0.00 0.00 3.06
341 799 2.778717 GGGATCCAGGGAAGGGGG 60.779 72.222 15.23 0.00 0.00 5.40
362 850 8.472007 TGGGCAAGTAAATAAAGAAGAGAAAA 57.528 30.769 0.00 0.00 0.00 2.29
415 917 4.567747 GCAGGGGAAGAATAGGAACAAAGA 60.568 45.833 0.00 0.00 0.00 2.52
417 919 3.333680 AGCAGGGGAAGAATAGGAACAAA 59.666 43.478 0.00 0.00 0.00 2.83
504 2320 9.931210 CAAATATTCTAAAAATGTAGGACGACC 57.069 33.333 0.00 0.00 0.00 4.79
569 2387 8.305317 TGCATCAAATCAAAATCTACACAATGA 58.695 29.630 0.00 0.00 0.00 2.57
612 2430 4.498009 CGGATGACAAACTATGGAATTGCC 60.498 45.833 0.00 0.00 37.10 4.52
658 2477 1.342275 TGGGCCTTGGAATCTCAATGG 60.342 52.381 4.53 0.00 0.00 3.16
715 2534 4.540099 TCAGGGAGGAAATTGTAATGGACT 59.460 41.667 0.00 0.00 0.00 3.85
718 2537 6.407299 CCAATTCAGGGAGGAAATTGTAATGG 60.407 42.308 0.00 0.00 0.00 3.16
726 2546 4.044571 TCAGTTCCAATTCAGGGAGGAAAT 59.955 41.667 0.00 0.00 41.42 2.17
746 2566 5.095490 GCTTCCGTATTGAATTGGTTTCAG 58.905 41.667 0.00 0.00 44.90 3.02
767 2587 4.955811 TCGGATGTATGTATTGAAGGCT 57.044 40.909 0.00 0.00 0.00 4.58
780 2600 1.011968 GCACGCTGTGTTCGGATGTA 61.012 55.000 9.76 0.00 35.75 2.29
808 2628 6.450845 AAACAACATTACACGCAAATCATG 57.549 33.333 0.00 0.00 0.00 3.07
809 2629 7.328249 CCTAAAACAACATTACACGCAAATCAT 59.672 33.333 0.00 0.00 0.00 2.45
810 2630 6.638873 CCTAAAACAACATTACACGCAAATCA 59.361 34.615 0.00 0.00 0.00 2.57
811 2631 6.088883 CCCTAAAACAACATTACACGCAAATC 59.911 38.462 0.00 0.00 0.00 2.17
812 2632 5.923684 CCCTAAAACAACATTACACGCAAAT 59.076 36.000 0.00 0.00 0.00 2.32
813 2633 5.067413 TCCCTAAAACAACATTACACGCAAA 59.933 36.000 0.00 0.00 0.00 3.68
814 2634 4.579340 TCCCTAAAACAACATTACACGCAA 59.421 37.500 0.00 0.00 0.00 4.85
815 2635 4.135306 TCCCTAAAACAACATTACACGCA 58.865 39.130 0.00 0.00 0.00 5.24
816 2636 4.752661 TCCCTAAAACAACATTACACGC 57.247 40.909 0.00 0.00 0.00 5.34
817 2637 7.364200 TGATTTCCCTAAAACAACATTACACG 58.636 34.615 0.00 0.00 0.00 4.49
818 2638 9.139174 CATGATTTCCCTAAAACAACATTACAC 57.861 33.333 0.00 0.00 32.01 2.90
819 2639 8.310382 CCATGATTTCCCTAAAACAACATTACA 58.690 33.333 0.00 0.00 32.01 2.41
820 2640 8.311109 ACCATGATTTCCCTAAAACAACATTAC 58.689 33.333 0.00 0.00 32.01 1.89
821 2641 8.310382 CACCATGATTTCCCTAAAACAACATTA 58.690 33.333 0.00 0.00 32.01 1.90
822 2642 7.016072 TCACCATGATTTCCCTAAAACAACATT 59.984 33.333 0.00 0.00 32.01 2.71
826 2646 6.985653 TTCACCATGATTTCCCTAAAACAA 57.014 33.333 0.00 0.00 32.01 2.83
828 2648 5.812127 GCATTCACCATGATTTCCCTAAAAC 59.188 40.000 0.00 0.00 34.31 2.43
830 2650 5.271598 AGCATTCACCATGATTTCCCTAAA 58.728 37.500 0.00 0.00 34.31 1.85
852 2672 7.128331 CGCATAAGTTACAAAATCATCAGGAG 58.872 38.462 0.00 0.00 0.00 3.69
854 2674 6.688385 CACGCATAAGTTACAAAATCATCAGG 59.312 38.462 0.00 0.00 0.00 3.86
855 2675 7.243487 ACACGCATAAGTTACAAAATCATCAG 58.757 34.615 0.00 0.00 0.00 2.90
857 2677 7.426456 CAGACACGCATAAGTTACAAAATCATC 59.574 37.037 0.00 0.00 0.00 2.92
874 2735 2.805671 CCATTTACTCAACAGACACGCA 59.194 45.455 0.00 0.00 0.00 5.24
970 2832 2.002586 CTGGAAGCATACACAAGGTCG 58.997 52.381 0.00 0.00 0.00 4.79
1399 3261 5.576384 TGATGCGAAACAGAAATTAATTGGC 59.424 36.000 0.39 0.00 0.00 4.52
1407 3269 6.071952 ACCATTAACTGATGCGAAACAGAAAT 60.072 34.615 7.82 4.22 37.54 2.17
1417 3279 1.202290 GCCCAACCATTAACTGATGCG 60.202 52.381 0.00 0.00 0.00 4.73
1510 3373 4.201783 GCAACAATACCAATACCAGTCGAC 60.202 45.833 7.70 7.70 0.00 4.20
1513 3376 5.414454 TCAAGCAACAATACCAATACCAGTC 59.586 40.000 0.00 0.00 0.00 3.51
1528 3391 2.694628 ACAGCAAGGATTTCAAGCAACA 59.305 40.909 0.00 0.00 0.00 3.33
1551 3415 5.445673 GCTTTGTTCACATCGATCTCTCAAG 60.446 44.000 0.00 0.00 0.00 3.02
1642 3507 6.072112 TCATCTTGAAGTAACCAAAGTTGC 57.928 37.500 0.00 0.00 38.74 4.17
1697 3562 7.339466 TCCTCCAGGCTAAACTAATTCAAATTC 59.661 37.037 0.00 0.00 34.44 2.17
1705 3570 4.008916 TCCTCCTCCAGGCTAAACTAAT 57.991 45.455 0.00 0.00 43.08 1.73
1751 3749 6.968263 TGGATGTTTTACCAAATGTTCTCA 57.032 33.333 0.00 0.00 32.93 3.27
1759 3757 8.696374 TGTTTTACTGATGGATGTTTTACCAAA 58.304 29.630 0.00 0.00 39.69 3.28
1801 3799 6.683974 AAATGACCAGGAAATGAACGATAG 57.316 37.500 0.00 0.00 46.19 2.08
1865 3870 0.538287 AGTGGTGAAAAGGAGCAGGC 60.538 55.000 0.00 0.00 0.00 4.85
1873 3878 5.584649 TGTAGACAGACAAAGTGGTGAAAAG 59.415 40.000 0.00 0.00 0.00 2.27
1879 3884 4.955811 TCATGTAGACAGACAAAGTGGT 57.044 40.909 0.00 0.00 31.83 4.16
1887 3892 6.368791 TGTGCTAATGTTTCATGTAGACAGAC 59.631 38.462 0.00 0.00 0.00 3.51
1929 3935 2.020720 TCACAACACAAGTGCCGAATT 58.979 42.857 0.00 0.00 36.93 2.17
1993 3999 0.620556 ATCAGAATGGGCCAACGAGT 59.379 50.000 11.89 0.00 36.16 4.18
1994 4000 2.620251 TATCAGAATGGGCCAACGAG 57.380 50.000 11.89 6.77 36.16 4.18
2026 4032 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
2027 4033 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
2028 4034 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2029 4035 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2030 4036 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2031 4037 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2032 4038 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2033 4039 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2034 4040 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2059 4065 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2060 4066 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2061 4067 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2062 4068 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2063 4069 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2064 4070 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2065 4071 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2066 4072 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2067 4073 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2068 4074 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2069 4075 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2070 4076 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2071 4077 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2072 4078 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2073 4079 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2074 4080 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2075 4081 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2076 4082 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2077 4083 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2078 4084 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2083 4089 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
2084 4090 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
2085 4091 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
2086 4092 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
2087 4093 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
2088 4094 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
2089 4095 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
2090 4096 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
2091 4097 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
2092 4098 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
2093 4099 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
2094 4100 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
2095 4101 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
2096 4102 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
2097 4103 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
2098 4104 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
2099 4105 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
2100 4106 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2101 4107 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2102 4108 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2103 4109 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2104 4110 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2105 4111 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
2106 4112 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
2107 4113 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
2108 4114 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
2109 4115 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
2110 4116 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
2111 4117 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
2112 4118 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
2113 4119 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2114 4120 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2115 4121 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2116 4122 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2117 4123 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2118 4124 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2119 4125 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2120 4126 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2134 4140 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
2135 4141 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
2136 4142 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
2137 4143 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
2138 4144 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
2139 4145 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
2140 4146 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
2141 4147 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2142 4148 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
2143 4149 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
2158 4164 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2159 4165 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2160 4166 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2161 4167 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2162 4168 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2163 4169 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2164 4170 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2165 4171 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2166 4172 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2167 4173 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2168 4174 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2169 4175 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2170 4176 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2171 4177 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2172 4178 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2177 4183 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2178 4184 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2179 4185 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2180 4186 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2181 4187 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2182 4188 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2183 4189 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2190 4196 2.911221 ATAAAGGGGAGCCTTGGCGC 62.911 60.000 6.84 6.84 0.00 6.53
2191 4197 0.472471 TATAAAGGGGAGCCTTGGCG 59.528 55.000 5.95 0.00 0.00 5.69
2192 4198 2.748209 TTATAAAGGGGAGCCTTGGC 57.252 50.000 2.97 2.97 0.00 4.52
2193 4199 4.344968 CCAAATTATAAAGGGGAGCCTTGG 59.655 45.833 0.00 0.00 0.00 3.61
2194 4200 5.208121 TCCAAATTATAAAGGGGAGCCTTG 58.792 41.667 0.00 0.00 0.00 3.61
2195 4201 5.481615 TCCAAATTATAAAGGGGAGCCTT 57.518 39.130 0.00 0.00 0.00 4.35
2196 4202 5.481615 TTCCAAATTATAAAGGGGAGCCT 57.518 39.130 0.00 0.00 0.00 4.58
2197 4203 6.747414 ATTTCCAAATTATAAAGGGGAGCC 57.253 37.500 0.00 0.00 0.00 4.70
2198 4204 7.865889 CGTTATTTCCAAATTATAAAGGGGAGC 59.134 37.037 0.00 0.00 0.00 4.70
2199 4205 7.865889 GCGTTATTTCCAAATTATAAAGGGGAG 59.134 37.037 0.00 0.00 0.00 4.30
2200 4206 7.342284 TGCGTTATTTCCAAATTATAAAGGGGA 59.658 33.333 0.00 0.00 0.00 4.81
2201 4207 7.493367 TGCGTTATTTCCAAATTATAAAGGGG 58.507 34.615 0.00 0.00 0.00 4.79
2202 4208 9.191995 GATGCGTTATTTCCAAATTATAAAGGG 57.808 33.333 0.00 0.00 0.00 3.95
2203 4209 9.743057 TGATGCGTTATTTCCAAATTATAAAGG 57.257 29.630 0.00 0.00 0.00 3.11
2210 4216 9.814899 TGAATTATGATGCGTTATTTCCAAATT 57.185 25.926 0.00 0.00 0.00 1.82
2211 4217 9.985730 ATGAATTATGATGCGTTATTTCCAAAT 57.014 25.926 0.00 0.00 0.00 2.32
2221 4227 9.800433 TGAATTGTTTATGAATTATGATGCGTT 57.200 25.926 0.00 0.00 0.00 4.84
2222 4228 9.236691 GTGAATTGTTTATGAATTATGATGCGT 57.763 29.630 0.00 0.00 0.00 5.24
2223 4229 9.454585 AGTGAATTGTTTATGAATTATGATGCG 57.545 29.630 0.00 0.00 0.00 4.73
2229 4235 9.941325 TGCCAAAGTGAATTGTTTATGAATTAT 57.059 25.926 0.00 0.00 0.00 1.28
2230 4236 9.941325 ATGCCAAAGTGAATTGTTTATGAATTA 57.059 25.926 0.00 0.00 0.00 1.40
2231 4237 8.723311 CATGCCAAAGTGAATTGTTTATGAATT 58.277 29.630 0.00 0.00 0.00 2.17
2232 4238 8.095792 TCATGCCAAAGTGAATTGTTTATGAAT 58.904 29.630 0.00 0.00 0.00 2.57
2233 4239 7.440198 TCATGCCAAAGTGAATTGTTTATGAA 58.560 30.769 0.00 0.00 0.00 2.57
2234 4240 6.990798 TCATGCCAAAGTGAATTGTTTATGA 58.009 32.000 0.00 0.00 0.00 2.15
2235 4241 7.837202 ATCATGCCAAAGTGAATTGTTTATG 57.163 32.000 0.00 0.00 0.00 1.90
2236 4242 8.095792 TGAATCATGCCAAAGTGAATTGTTTAT 58.904 29.630 0.00 0.00 0.00 1.40
2237 4243 7.440198 TGAATCATGCCAAAGTGAATTGTTTA 58.560 30.769 0.00 0.00 0.00 2.01
2238 4244 6.289834 TGAATCATGCCAAAGTGAATTGTTT 58.710 32.000 0.00 0.00 0.00 2.83
2239 4245 5.856156 TGAATCATGCCAAAGTGAATTGTT 58.144 33.333 0.00 0.00 0.00 2.83
2240 4246 5.471556 TGAATCATGCCAAAGTGAATTGT 57.528 34.783 0.00 0.00 0.00 2.71
2241 4247 5.697178 TGTTGAATCATGCCAAAGTGAATTG 59.303 36.000 0.00 0.00 0.00 2.32
2242 4248 5.856156 TGTTGAATCATGCCAAAGTGAATT 58.144 33.333 0.00 0.00 0.00 2.17
2243 4249 5.471556 TGTTGAATCATGCCAAAGTGAAT 57.528 34.783 0.00 0.00 0.00 2.57
2244 4250 4.933505 TGTTGAATCATGCCAAAGTGAA 57.066 36.364 0.00 0.00 0.00 3.18
2245 4251 5.231702 CAATGTTGAATCATGCCAAAGTGA 58.768 37.500 0.00 0.00 0.00 3.41
2246 4252 4.142988 GCAATGTTGAATCATGCCAAAGTG 60.143 41.667 0.00 0.00 0.00 3.16
2247 4253 3.998341 GCAATGTTGAATCATGCCAAAGT 59.002 39.130 0.00 0.00 0.00 2.66
2248 4254 3.997681 TGCAATGTTGAATCATGCCAAAG 59.002 39.130 4.37 0.00 0.00 2.77
2249 4255 3.747010 GTGCAATGTTGAATCATGCCAAA 59.253 39.130 4.37 0.00 0.00 3.28
2250 4256 3.327626 GTGCAATGTTGAATCATGCCAA 58.672 40.909 4.37 0.00 0.00 4.52
2251 4257 2.671632 CGTGCAATGTTGAATCATGCCA 60.672 45.455 4.37 0.00 0.00 4.92
2252 4258 1.921887 CGTGCAATGTTGAATCATGCC 59.078 47.619 4.37 0.00 0.00 4.40
2253 4259 2.598589 ACGTGCAATGTTGAATCATGC 58.401 42.857 0.01 0.01 25.44 4.06
2265 4271 8.808264 TTAGATGCCTAATTAGCAACGTGCAAT 61.808 37.037 13.48 9.31 44.83 3.56
2266 4272 7.569016 TTAGATGCCTAATTAGCAACGTGCAA 61.569 38.462 13.48 5.46 44.83 4.08
2267 4273 6.143061 TTAGATGCCTAATTAGCAACGTGCA 61.143 40.000 12.32 12.32 44.83 4.57
2268 4274 2.614057 AGATGCCTAATTAGCAACGTGC 59.386 45.455 6.99 4.76 44.83 5.34
2269 4275 5.984233 TTAGATGCCTAATTAGCAACGTG 57.016 39.130 6.99 0.00 44.83 4.49
2270 4276 6.542370 ACATTTAGATGCCTAATTAGCAACGT 59.458 34.615 6.99 0.41 44.83 3.99
2271 4277 6.959361 ACATTTAGATGCCTAATTAGCAACG 58.041 36.000 6.99 0.00 44.83 4.10
2282 4288 9.599866 GCCTTTTAAAATAACATTTAGATGCCT 57.400 29.630 0.09 0.00 36.72 4.75
2283 4289 9.377312 TGCCTTTTAAAATAACATTTAGATGCC 57.623 29.630 0.09 0.00 36.72 4.40
2299 4305 9.906660 CTGTTGAACACTTATATGCCTTTTAAA 57.093 29.630 0.00 0.00 0.00 1.52
2300 4306 8.026607 GCTGTTGAACACTTATATGCCTTTTAA 58.973 33.333 0.00 0.00 0.00 1.52
2301 4307 7.175816 TGCTGTTGAACACTTATATGCCTTTTA 59.824 33.333 0.00 0.00 0.00 1.52
2302 4308 6.015519 TGCTGTTGAACACTTATATGCCTTTT 60.016 34.615 0.00 0.00 0.00 2.27
2303 4309 5.476599 TGCTGTTGAACACTTATATGCCTTT 59.523 36.000 0.00 0.00 0.00 3.11
2304 4310 5.009631 TGCTGTTGAACACTTATATGCCTT 58.990 37.500 0.00 0.00 0.00 4.35
2305 4311 4.588899 TGCTGTTGAACACTTATATGCCT 58.411 39.130 0.00 0.00 0.00 4.75
2306 4312 4.963276 TGCTGTTGAACACTTATATGCC 57.037 40.909 0.00 0.00 0.00 4.40
2307 4313 5.276270 CCATGCTGTTGAACACTTATATGC 58.724 41.667 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.