>input_sequence_83635
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-------------------------------------------------------------ATGAGGAAGGGACTTCATC
CCCAGATGCAGTGGATCTCGTACGTGACGCAGAGCGGCAGGCTGATCAACATCATGATGACCAAGGTGAACCACACCGGC
AAAGTGTACCACATGAGGGCGAAGCGGCAGATGGCTCAGAGCCTGGGGCAGATCGCCAAGTTCAAACGCCGATACGAGCA
GGAAGCGCCGGAGGAGAACCAAGACAAGTAGGGCAGTGCTGTTTGCAAAGGAGATATGCATTCTCCTTAGCCTTAAGCTG
CATCATCAGATTTTAGTTAATGAACTTTGTTCATGGAATTTTGTTTCCATTCTCAGGGATAATGCTGTTTAA--------
--------------------------------------------------------------------------------
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----------------
>chr5A_1_TraesCS5A01G281200
CCGGCGACCAGCAGCACCCCTCTCTTCTCCGTTGGTGATTCCTCCCCAGGTACTATAACCCTAGCTGTTCGATCTGCTTG
TGCAT-------GCTGATCTGAAGTACTGTTCGTGTGCGGTTTGTGTGTATGCGATGGCTCGTGTTTATGCCC----TGT
ATAGCATGCTTCTTTATGATTGGTTAGCTGCAGTTCCGAGGACAACATACTTCAGTTTTGTGCAGCGCCTGAAT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CTAGCTGGCCGGCGCGCCCTCGATCCCGCCCATCCCACTGGCCGGCGCAGCCACCCGCTCCCCATCTCGCCCAT
CTTCTTCTTCCA---------CATCTTC-------------------------TTCCCCTTCCTCTTCCATCTTCTTCC-
CCCCTTCC-----------------------------CTGGATCCCCCTTTTTCTCTTCTTTATTTACTTGCCCAGGCAG
CCCCTTCTAAGTTCCTCC--------------TCTTTCT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------TTGTTCCTATTCTTCCCCTGCTCTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CATGCACATGAATTTACTGACCACAGATTCA-----------------------
--------------------------------------------------------------------------------
------------------------------TCTT-TTGCAGG-----------GTGTGCAAATATTATTTGG-------G
GTCGTCCTACATTTTTAGAATATTTGTT-ATTT-TTATTGCTATATGATCATTCAATTATACTTACTCATTGTGTAGATT
TTGATTTGATGCATAAAGCACAAAGCATAG-GCAATTCCATAGTTTGTCATCCGAACATGATTTGGTATTGAAAACCCAT
TGAGATTCCAAGGCCCAATTTCATGAGCATCCAAACATGTGAATTCGTATTCAAGTCC-ATTACAATTTCCTCCCTGAAT
TGGAACTGAAACCAATTCAATACGGAAGCCTTCAATACATACATCCGAACACAGCGTGCATGTTGAGCATGATTTGCGTG
TAATGTTGTTTTAGGGAAATCATGGTGAATGCTCCTG-----------------------------------------AT
GATTTTGTAACTTATGCGTGTCTGTTGAGTAAATGGATGTTTCTTCCATGGTTAACATCTGGAAACTTGATAACAATAGA
TATGTATTACTATT-CACCCCTTTTGTCTGACGACCTTGTGTATGCTTCCAGGTTGGAAGGATGAGGAAGGGACTTCATC
CCCAGATGCAGTGGATCTCGTACGTGACGCAGAGCGGCAGGCTGATCAACATCATGATGACCAAGGTGAACCACACCGGC
AAAGTGTACCACATGAGGGCGAAGCGGCAGATGGCTCAGAGCCTGGGGCAGATCGCCAAGTTCAAACGCCGATACGAGCA
GGAAGCGCCGGAGGAGAACCAAGACAAGTAGGGCAGTGCTGTTTGCAAAGGAGATATGCATTCTCCTTAGCCTTAAGCTG
CATCATCAGATTTTAGTTAATGAACTTTGTTCATGGAATTTTGTTTCCATTCTCAGGGATAATGCTGTTTAAACCTCTGC
AAGTTCGTGTCACTTGCATGTTGGGATTCTCAGAGCCATAAAACAAAAGGAAATTTTGAAGCCAATTAATTTCTGTTTC-
GCATCAGTTAATGGTTGGGCATGACAACGTGTCTTTGATTTAGTTCTGTTTCTACTGTATTTCTAGTTTGTTTCAGAACA
TGTCTTTGAGAGGTCGACTGGTATTGGTATTGTTGCTTGAAATCCTT-GCTGTACTTGAGAGATCGATGTGAACAAAGCT
CAGCGGTTC-TTGTGCTGCTTACCTTGCAGGCTTTGCACAACGTGAGCTTCTGAGAACTGAGTTCAGCAACTTTGGTTAC
TTCAAGATGATGATGAGTTTTGCCGGGATGATGATTGGCTAGAATTTGAATTAGTTTAGCCTGGAGGAGGAAG---ATGA
AGAGAAAA------------------------------------------------------------------------
----------------------------------------------------------CACAATTATATGAGAACATTTG
GTAAAACATCCATCAGTAAAACACACTGGCCTCATCTACTATCGTTCATTTCCTGGTCATTTTCCAACGTGA-------A
AATGAACAAAATCTTGCGTAACAGCCAGCGCCTGCTCCTTTTCACCACTTTGTCTGTCTACATGAAACATTAGCACAGTT
TCACATCAT-AAAAAATTCGGCACTTGTGTTGTGATAAATTTTAAGAAACAAAGTACGGCTATCAAATTTCACACAACAC
TCGTTGGCCCATTCTGATAATTTGGAAATAAAAAAGGGCAACCTGGTGCATGTAGCTCCCGCTTGCGCAGGGTCCAGGGA
AGGGTCCGACCACTTTGGGTCTATAGTACGCAGCCTTTCCCTACATTTCTGTAAGAGGCTGTTTCCAGGACTTGAACCCA
TGACCTCATGGTCACAAGGCAGCAGCTTTACCACTGCGCCAAGGCTCCCCTTTATAATTTGGAAATAACGCATCATAATT
CATAAACAATTCACTTTGGCATGATTCAACATTGCACGTTGCTAATTAGGCATCTAAATGTTATTTTAAAAGGCATATAA
GTGTTCAACAGCATGG
>chr5B_1
CCGGCGACCAGCAGCACCCCTCTCTTCTTCGTCGGTGATTCCTCCCCAGGTACTGTAACCCTAGCTGTTCGATCTGTTTG
GACAGTAGATTCGCTGATCTGTTTGG------------------------------------------------------
--------------------------------------------------------------------------------
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--------GCTCGGCTAGGACAATAAGTATGCAGG--TGCAGACTATCTGTAACCG-AAAGTAGCCAAATGGCCTAAATC
AAAATATGCACTGCTCAGTTCTTAACCACCTTAACAGAATCAGATCAGCAGCAGCTGGAAACTAGAGCACAGCGTCTGTC
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GTAGAATCGCCCATGGAGCTGCTCAAGTCATATTTCCATGTCCGTCTGCAGACCATGCT
AACTTCTTTTGCAA-CCAAGTGTTCTAGTGGCCAAACATGACCACAGCGAGTCGAGAATTTTAAAGTACCAGTACCATTT
ATAGTCTCTCAGCAATCATATGACCGAACCCTTTCTTTGGAT-----------GTGTTACTCCTGCTATATTGCAAAC--
--------------TTGGAATAATTGTT-ATGA-TAGGTCCTACGTTAACCATGGTGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ATGCTTTCTTAGGGAAATCATGGTGAATGTTGATCATGTTTTTGTAAGTAATATTTTTGAGAGGTGAATGCTGATCAT
GATTTTGTAACTTACGCGTGTCTGTTGAGGAAATGGATGTTTCTTCCATGGTTAACATCTGGAAACCCGAT---AATAGA
TATGTATTACTATTTCATCCCTTTTGTCTGATGATCCTGCGTATGGTTCCAGGTTGGAAGGATGAGGAAGGGGCTTCATC
CCCAGATGCAGTGGATCTCGTACGTGACGCAGAGCGGCAGGCTGATCAACATCATGATGACCAAGGTGAACCATACCGGC
AAGGTGTACCACATGAGGGCGAAGCGGCAGATGGCACAGAGCCTGGGGCAGATTGCCAAGTTCAAACGCCGATACGAGCA
GGAAGCGCCGGAGGAGAACCAAGACAAGTAGGACACTGCTGTTTGCAGAGGAGCCATAGATTCTCCTTAGCCTTAAGCTG
CGTCATCAGATTTTAGTTAATGAACTTTGGTCGTGGAATTTTGTTTCCATTCTCAGGGATAATGCTGTTTAAACCTCTGC
AAGGTTGCGTTACTTGCATGTTGGGATTCTCTAAGTCGTAAAACAAAAAGGAA---TGGAACCAATTAGTTTCTGTTTTT
ACATCAGTTAATGGTTGGGCATGCCAACATGTCTTTC------TTCTGTTTCTAATGCATTAGT----------------
--------------------------------TTGCTTGAAATCCTTTGCTGTAATTGAGAGATCGATGTGAACAAAGCT
CAGCGGTTC-TTGTGCTGCTTACCTTGCAGGCTTTGCACAACGTGGGCTTCTGAGAACTCAGTTCAACAACTTTGGTTAC
TTCAAGATGATGATGAGTTTTGCCGGGATGGTGATTGGCTAAAATTTGATTTAGTTTAGCCTGGAGGAGGAGGAACATGA
AGAGATGGAGGCACTGAAGCTGTGGAGGCGGCAGTGTTCACAGTTCACAAACCAGTAGGATGCTTCAACTTACCGTGCCT
TCTATATCGATCTAATCTTTTCCATAAGCAGCTAAGAAATGCACCGCATCATTTCAAGCACAATTATACGAGAACAATTG
GTAGAATATCCATCAGTAAAACATGCTGACCTCTTCTAATATCGTTCATTTCCTGATCATTTTCCAACGTCAATTGAACA
AATGAACAAAATCTTGCGTAACAGCCAACACCTGCTCATTTTCCCCACTTTATCTGTCTACATGAAACATTGGCACAATT
TCACATCAT-AAAACATTCGGCAGTTGTGTTGTGATAAATTTTAAGAAACAAAGTACGGTTATCAAATTTCAGACAACTA
TCGTTGGCCCATTATGATAGTTTGGAAATAA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr5D_79
------------------------------------------------------------------------------TG
TGCGT-------GCTGATCTGAAGTGCTGTTCGTTTGTGATTTGTGTGTATGCGATGGCTCGTGTTTATACCTTTTTTGT
ATGGCATGCTTCTTTCTAATTGGTTGGCTGCAGTTTGTAGGACGACATGGTTCAGTTTTGTGCATGTCATATCTTCAAGT
TACTTTTTCTCTGGTTTCAATTTTCTGTTGTAGATGGACAGTAAGGGCCAGTTCTTTTGGCTCAATTGTGAAGAATTACT
GCCCTGCCCCAGGAATTGCCCACGATCATCTCACAACTCCAAGTGTAATCTAGAATGACCAATTTCTGGCAAAATAAAAC
TGTTCGTTTTAAACAAGTACTCTACCGCTATTGGGCACTGAAATTACGGCCAAAATGCCACTCCCCGACCCAACAGACCC
GAGCGCAACTCCTTCCTCCTGTCCTGTGCCCGCAAACTCCTTTCGTCCCCAACCTTCCTTCTGCTAGGGTTGGCGCCGCC
AGGCTGCTCCCCGCCGCCGCTGCTCACCACGGAAGCCCCTCCCCAAGTCCTTCCCCGCCCGACCCGAGCTCCAACGCGAA
CCGCCCCGACCCGGCCGGCCCTCCCTTCCCTCCGCCCGGAAGCAGGCCGCCACCACCGCGCCCAG---------------
---CTGCCCCGTCTCCTCTGCGGCCAGCCACCACCGCGCCCGCTGCTGGTGAGTTCCCCTCTGTCTCCCTCGAATATGGA
TTGATGGATGCAGTAAAAAAATTAGAAAGGTTTGGATATGCTGCCC-CTCTGTCTCCCTCGAATGTA-------------
-----TCTAAGTGCCTCTTTTCTTCTCTCTATTATTCGAATATGGATTGTTGGCTGCAGTAAAAAAATTGGAATAGGTCT
ACTGGTTAGTTAAATTGTACGTTAACTTGTTAGTTAAAGTGTATTCGAATTCGAATATGCCCCTCTGCCCAGACACCACC
TATTTGGAATGCAGTAAAATAATTGCATGTTAACTTGTTAGTTAAATTGTATTTACTGGTTTGGATATGCAACATTTAGC
AAAAAACAATCTGTAAGGAATGTACTTCTTTAGATTAAAACATTGACATGTGAATGTTGTAGATGGATAAAGGGAAGCAG
AAAGCAATTTGGGATGCTGCTGCTCATTCCATATATATATGGATGTGTGCGTAGAGGAGGTGCGAGCAAACCACCGCGCC
ATAGGAAACACCACTTTATCCAATGTAGGACAAGCTAATTTGTTTACTAAGTTCAATGAGCGCTCCAAGGGAAACTATTG
TAATATTATATATTTTATTGATGAGATTTGCAGCTCGTTTTCGTGTTCATGTTAGACATCAAACTGACCGAAATAATTAA
GTGTTACCAATTCATCACTCACTTCAATCTAGGGGCATTACAGACATTTCAATAGACAACTCATACAACAATCACAGGCT
AGAATCACAGAAAAGAACTGGACAGGCAATTCTGTAGGCAGTTTCCTAGAATTATAATTCTCCAGAATTATGAGGCGGAA
AGAACTGGCCCTAAGAGGAAGATGCTAATTTAAGCAGCTGTGTCACATGTTCTTATTTCCATGTCACACATGTTGCTACT
ATAACTAAGCTCGGCTAGAACAATAAATATGCAGGGATGCAGACTATCTGTAAAGAAAAAGTAGCCAAATGGCCTAAATC
AAAATATGCACTGCTCAGTTCTTGATTTAGGCCGTTTGGTTTATATCAAATATATACACATACACCATATATACAAGAGT
CTTCTGGTTATTCAG-TTCTTATACATTTTCCTTTGATTTCTTGGCTTGCTCCTCGATTCCATGTCAATCCCTAGCGGGA
TCTGACACTGCTGCTGCTGCTGACTCAGATGGCTGAATAGTGGATCGATGCCTCTCATCTCTGTATCGTTCCAATTTTAG
CGGATGTCCCCGAAGGAACGATACCTCTCATCTAGTTACCACCCTTTGTATAGCCTGAGGTTACAGAGAGTAACTTGAAA
ATAGAAATAATAACTGCCCATGTAGAATCGCCCATGTAGCTGCTGAAGTCATATTTCTATGCCCGTCTGCATACAATGCT
AACTTCTTTTTTAACCCAAGTGTTCTAGTGCCCAAAAATGACCACAATGAGTCGAGGATTTTAAAGTACTAGTACCATTT
ATAATCTCTCTGCAATCATGTGACCGAACCTTTT-TTTGGAT-----------GTGTTGCTCCTGCTATATTGCAAAC--
--------------TTGGAATAATTGTT-ATGA-TAGGTCCTACATTAATCATGGTGT----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--ATGCTTTCTTAAGGAAATCATGGCGAATGTTGATCATGATTTTGTAAGTAATATTTTTGAGAGGTGAATGCTGATCAT
GTTTTTGTAACTTACGCGTATCTGTTGAGGAAATGGATGTTTCTTTCATGGTTAACATCTGGAAAGCCGAT---AATAGA
TATGTATTACTATTTCGTCCCTTTTGTCTGATGACCTTGCGTGCGATTACAGGTTGGAAGGATGAGGAAGGGACTACATC
CTCAGATGCAGTGGATCTCATACGTGACGCAGAGCGGCAGGCTGATCAACATCATGATGACCAAGGTGAACCACACCGGC
AAAGTGTACCACATGAGGGCGAAGCGGCAGATGGCTCAGAGCCTGGGGCAGATCGCCAAGTTCAAACGCCGATACGAGCA
GGACGCGCCGGAGGAGAACCAAGACAAGTAGGGCATTGCTGTTTGCAAAGGAGATATACATTCTCCTTAGCCTTAAGTTG
CATCGTCAGATTTTAGTTAATGAACTTTATTCGTGGAATTTTGTTTCCATTCTCAGGGATAATGCTGTTTAAACCTCTGC
AAGTTCGTGTCACTTGCATGTTGGGATTCTCAGAGCCATAAAACAAAAGGAAATTTTGAACCCAATTAGTTTCTGTTTTG
GCATCAGTTAATGGTTGGGCATGACAACGTGTCTTTGATTTAGTTCTGTTTCTACTGTATTACTAGTTTGTTTCAGAACA
TGTCTTTGAGAGATCAACTGGTATTGGTATCGTTGCTTGAAATCCTT-GCTGTAGTTGAGAGATCGATGTGAACAAAGCT
TGGGGGTTCTTTGTGCTGCTTAGCTTGCAGGCTTTGCACAACGTGAGCCTCTGAGGACCGAGTTCAACAGCTTTGGTTAC
TTCAA---GATGATGAGTTTTGCCAGGATGGTGATTGGCTAAATTTTGATTTAGTTTAGCCTGGAGGAGGAAG---ATGA
AGAGAAGA------------------------------------------------------------------------
----------------------------------------------------------CACAATTATACGAGAACAATTG
GTAAAACATCCATCAGTAAAACACGCTGGCCTCTTCTAATATCGTTCATTTCCTGTTCATTTTCGAACGTGAAATGAACA
A--------AATCTTGCGTAACAGCCAGCACATGTTCATTTTCCCCACTTTATCTGTCTACATGAAACATTAGCACAATT
TCACATCATAAAAACATTCGGCACTTGTGTTGTGATAAATTTTAAGAAACAAAGTACGGCTATCAAATTTCACACAACTA
TCGTTGGCCCATTCTGATAGTTTGGAATTAA-------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr5B_222
--------------------------------------------------------------------------------
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------------------------------------------------------------------------AT------
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------CTCGCTGGCCGGTGCGCCCTCCATACCGCCCATCTCGCTGGCTGGCGCAACCCCT---------------CCAT
CTTCTTCCCCTTCTCCCCTGCCATCTAC-------------------------TTCCCCTTCCTCCTCCATCTTCTTCTT
CCCCTTCC-----------------------------ATGGACCCCCTTCTTTCTCTTCCTTTG---CTTAACCAGCCAG
CCTTTTCTAAGTTCTTCC--------------TCTTCCC-----------------------------------------
--------------------------------------------------------------------------------
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-------TTGTTCTG-TTCTTCCCTG------------------------------------------------------
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-------------------ATGTCCACGTTCCCATGAATTTACTGACCACATGTTTA-----------------------
--------------------------------------------------------------------------------
------------------------------TTTT-TTTGCAG-----------GTGTTGCTGGATCCCCCTTCTTTCTCT
TCCTTTGTGCATTTGTAAAATGTTTGTTAATTT-TTATTCCTATATAATCATTCAATTAT---CACACATTGTACAGATT
TTAATTTGATGCAGAAAGCACAAAGCATTACGCAATTCCATAGTTTGTCATCTGAACATGATTTGGTATTGAAAACTGAT
TATGATTCCATGGGCCAATTTCATGAGCATCCAAACATGTGAATTCGTATTCATGT-C-ATTACGGTTTCCTCCCTGAAT
TGGAATTAAAACCAATTCAATACGGAGGCCTACAATACAGACATCCGAACACAGCGT-----------------------
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>chr3A_222
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------------------------------------------------------------------------AT------
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------CTCGCTGGCCGGTGCGCCCTCCATCCCGCCCATCTCGCTGGCTGGCGCAACCCCT---------------CCAT
CTTCTTCCCCTTCTCCCCTGCCATCTAC-------------------------TTCCCCTTCCTCCTCCATCTTCTTCTT
CCCCTTCC-----------------------------ATGGACCCCCTTCTTTCTCTTCCTTTG---CTTAACCAGCCAG
CCTTTTCTAAGTTCTTCC--------------TCTTCCC-----------------------------------------
--------------------------------------------------------------------------------
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-------TTGTTCTG-TTCTTCCCTG------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------ATGTCCACGTTCCCATGAACTTACTGACCACATGTTTA-----------------------
--------------------------------------------------------------------------------
------------------------------TTTT-TTTGCAG-----------GTGTTGTTGGATCCCCCTTCTTTCTCT
TCCTTTGTGCATTTGTAAAATGTTTGTTAATTT-TTATTCCTATATAATCATTCAATTAT---CACACATTGTACAAATT
TTAATTTGATGCAGAAAGCACAAAGCATTACGCAATTCCATAGTTTGTCATCCGAACATGATTTGGTATTGAAAACTGAT
TATGATTCCATGGGCCAATTTCATGAGCATCCAAACATGTGAATTCGTATTCATGT-C-ATTACGGTTTCCTCCCTGAAT
TGGAATTAAAACCAATTCAATACGGAGGCCTACAATACAGATATCCGAACACAGCGT-----------------------
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----------------
>chr7A_222
--------------------------------------------------------------------------------
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------------------------------------------------------------------------AT------
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------CTCGCTGGCCGGTGCTCCCTCCATCCCGCCCATCTCGCTGGCTGGCGCAACCCTT---------------CCAT
CTTCTTCCCCTTCTCCCCTGCCATCTAC-------------------------TTCCCCTTCCTCCTCCATCTTCTTCTT
CCCCTTCC-----------------------------ATGGACCCC-TTCTTTCTCTTCCTTTG---CTTAACCAGCCAG
CCTTTTCTAAGTTCTTCC--------------TCTTCCC-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------TTGTTCTG-TTCTTCCCTG------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ATGTCCACGTTCCCATGAATTTACTGATCACATGTTTA-----------------------
--------------------------------------------------------------------------------
------------------------------TTTT-TTTGCAG-----------GTGTTGCTGGATCCCCCTTCTTTCTCT
TCCTTTGTGCATTTGTAAAATGTTTGTTAATTT-TTATTCCTATATAATCATTCAATTAT---CACACATTGTACAGATT
TTAATTTGATGCAGAAAGCACAAAGCATTACGCAATTCCATAGTTTGTCATCCGAACATGATTTGGTATTGAAAACTGAT
TATGATTCCATGGGCCAATTTCATGAGCATCCAAACATGTGAATTCGTATTCATGT-C-ATTACGGTTTCCTCCCTGAAT
TGGAATTAAAACCAATTCAATACGGAGGCCTACAATATAGACATCCGAACACAGCGT-----------------------
--------------------------------------------------------------------------------
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----------------
>chr4A_294
CCACTTCTTCTCTGCCATTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TCTTC-------------------------TTCCCCTTCCTCTTCCATCTTATTC--
CCCCTTCC-----------------------------CCGGATCCCCTTGTTTCTCTTCTTT----ACTTCCCCAGGCAG
CCCCTTCTAAGTTCCTCC--------------TCTTCCC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------CTGTTCCTATTCTTCCCCTGCTCTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CATGCACATGAATTTACTAACCACAGATTCA-----------------------
--------------------------------------------------------------------------------
------------------------------TCTT-TTGCAGGTCCTTTGCAGGGTGTGCAAACATTATTTGG-------T
GCCGTTGTAAATTTCTAGAATATTTGTAATTTT-ATATTGATATATGATCATTCAATTATACTCACACATTGTATAGATT
TTGATTTGATGCATAAAGCACAAAGAATAA-GCAATTCCATAGTTTGTCATCCGAACATGATTTGGTATTGAGAACTCAT
TGAGATTCCAAGGCCCAATTCCATGAGCATCCAAACATGTGAATTTGTATTCATGT-CCATTACAGTTTCCTCCCTGAAT
TGAAATTGAAACCAATTCAATACGAAGGCCTTCAATACAGACATCCGAACACAGCG------------------------
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----------------
>chr4D_297
TC-----TTTTCTGCCATTT------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TCTTC-------------------------TTCCACTTCCTCTTCCATCTTCTTC--
CCCCTTCC-----------------------------CCGGATCCCCCTGTTTCTCTTCTTT----ACTTGCCCAGGCAG
CCCCTTCTAAGTTCCTCTTCCCCTTTTCCCATTCTTCCC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CTGTTCCTATTCTTCCCCTGCTCTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CATGCACATGAATGTACTAACCACAGATTCA-----------------------
--------------------------------------------------------------------------------
------------------------------TCTT-TTGCAGGTCCTGTTCAGGGTGTGCGAATATTATTTGG-------T
GTCGTCATACATTTTTAGAATATTTGTAAAAAAAATATTGATATATGATCATTCAATTATACTCACACATTGTATAGATT
TTGATTTGATGCATAAAGCACAAAGCATAA-GCAATTCCATAGTTTGTCATCCGAACATGATTTGGTATTGAAAACTCAT
TGAGATTCCAAGGCCCAATTCCATGAGCATCCAAACATGTGAACTCGTATTCATGT-CCATTACAGTTTCCTCCCTGAAT
TGAAATTGAAACCAATTCAATATGAAGGCCTTCAATACAGACATCCAAACACAGCG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>SNPs
----------------------------S---S---------------------S---------------------S---
-------------------------S--------S--S-S-----------------------------S--S-------
--S------------S-S-------S---------SSS-----S----SS--------------SSS-S-SS--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S------------S-S-----S------S--S---SSSSSSSSSSSSSS----
-------SS-SS------------------------------------------------------------------S-
-------------------------------------------------S--------------S---------------
------------------------------------S-S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
------S--------------------------------------------------------S--S------S------
-----------------------------S----------------------------------------------S---
-----------------------------------------------------S--S--------S--------------
-----S--------------------S------------S-----------------SSSSSSSSSSSSSSSSSSSSSSS
SS---S-S-S---------------------S-SS-S-------------------------------------------
--------------S--------------S------------------------------------SS---SSS------
-----------------S-------------S-------S-----S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S---------------------S----------------------
--------------------------------S-----------------------------------------------
------------------------------------------------------------S-------S---------S-
-------------------------------------------------------------S------------------
------------S--S--------------S-----------------------S-------------------------
------------------------------------------------------------------S-------------
------------------------------S----------S-------S------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------S-------S---
------------------------S--------S----S----------------S------------------------
-----------------------------S-------S-----S-------S-------------------------S--
--------------S---------------------------------------------------------------SS
-------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_2626
--------------------------------------------------------------------------------
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----------------------------------------------GAACACAGCGTGCATGTTGA--------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_4176
--------------------------------------------------------------------------------
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---------------AAGGCAGCAGCTTTACCACT---------------------------------------------
--------------------------------------------------------------------------------
----------------
