Multiple sequence alignment - TraesCS5A01G280500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G280500 chr5A 100.000 3816 0 0 1 3816 489795345 489799160 0.000000e+00 7047.0
1 TraesCS5A01G280500 chr5A 91.967 361 22 4 2459 2812 489797445 489797805 2.050000e-137 499.0
2 TraesCS5A01G280500 chr5A 91.967 361 22 4 2101 2461 489797803 489798156 2.050000e-137 499.0
3 TraesCS5A01G280500 chr5A 88.172 279 26 5 1703 1979 660302907 660303180 3.680000e-85 326.0
4 TraesCS5A01G280500 chr5A 97.826 92 2 0 3618 3709 489799053 489798962 3.950000e-35 159.0
5 TraesCS5A01G280500 chr5A 92.157 51 4 0 1184 1234 676318376 676318426 5.290000e-09 73.1
6 TraesCS5A01G280500 chr5B 91.182 2699 158 25 654 3336 465236278 465238912 0.000000e+00 3592.0
7 TraesCS5A01G280500 chr5B 90.183 438 19 14 3395 3816 465238917 465239346 2.000000e-152 549.0
8 TraesCS5A01G280500 chr5B 93.277 357 20 3 2459 2812 465237723 465238078 1.210000e-144 523.0
9 TraesCS5A01G280500 chr5B 91.901 284 17 4 2178 2461 465238130 465238407 3.570000e-105 392.0
10 TraesCS5A01G280500 chr5B 79.600 500 96 6 3 498 78224876 78225373 1.690000e-93 353.0
11 TraesCS5A01G280500 chr5B 84.694 98 7 4 3618 3713 472738610 472738519 1.460000e-14 91.6
12 TraesCS5A01G280500 chr5D 93.760 1843 79 13 1502 3336 387089664 387091478 0.000000e+00 2734.0
13 TraesCS5A01G280500 chr5D 93.291 790 37 7 695 1481 387088829 387089605 0.000000e+00 1151.0
14 TraesCS5A01G280500 chr5D 92.818 362 20 4 2101 2461 387090616 387090972 1.570000e-143 520.0
15 TraesCS5A01G280500 chr5D 91.620 358 26 3 2459 2812 387090261 387090618 3.430000e-135 492.0
16 TraesCS5A01G280500 chr5D 89.051 274 26 3 1706 1979 47186466 47186197 1.700000e-88 337.0
17 TraesCS5A01G280500 chr5D 88.448 277 28 3 1703 1979 326030369 326030641 7.900000e-87 331.0
18 TraesCS5A01G280500 chr5D 91.416 233 12 5 3395 3619 387091483 387091715 2.860000e-81 313.0
19 TraesCS5A01G280500 chr5D 93.578 109 7 0 3708 3816 387091714 387091822 3.050000e-36 163.0
20 TraesCS5A01G280500 chr7D 83.463 514 82 3 3 514 104941947 104941435 3.450000e-130 475.0
21 TraesCS5A01G280500 chr7D 79.559 499 94 7 3 498 135440341 135439848 2.180000e-92 350.0
22 TraesCS5A01G280500 chr1B 91.815 281 21 1 3056 3336 28547999 28547721 1.290000e-104 390.0
23 TraesCS5A01G280500 chr1B 85.106 94 4 5 3618 3711 131503021 131502938 1.890000e-13 87.9
24 TraesCS5A01G280500 chr7B 82.697 445 69 7 48 488 541944718 541944278 4.620000e-104 388.0
25 TraesCS5A01G280500 chr7B 81.737 449 71 10 56 498 541709465 541709022 7.790000e-97 364.0
26 TraesCS5A01G280500 chr7B 92.308 65 4 1 3331 3394 622305592 622305528 1.460000e-14 91.6
27 TraesCS5A01G280500 chr7B 77.622 143 14 9 3578 3710 134634254 134634120 1.900000e-08 71.3
28 TraesCS5A01G280500 chr3D 80.321 498 94 4 3 498 400750299 400749804 1.290000e-99 374.0
29 TraesCS5A01G280500 chr3D 87.726 277 31 2 1703 1979 63801997 63802270 1.710000e-83 320.0
30 TraesCS5A01G280500 chr3D 94.118 68 2 2 3331 3398 261751914 261751849 6.740000e-18 102.0
31 TraesCS5A01G280500 chr6D 80.287 487 92 4 15 498 351136907 351136422 7.790000e-97 364.0
32 TraesCS5A01G280500 chr4A 80.290 482 93 2 18 498 472354141 472354621 2.800000e-96 363.0
33 TraesCS5A01G280500 chr4A 87.956 274 30 1 1706 1979 216406550 216406280 1.710000e-83 320.0
34 TraesCS5A01G280500 chr6B 79.957 464 86 5 37 498 214084531 214084989 6.110000e-88 335.0
35 TraesCS5A01G280500 chr4B 88.448 277 29 1 1703 1979 509512918 509513191 7.900000e-87 331.0
36 TraesCS5A01G280500 chr4B 84.112 107 5 6 3608 3711 315723264 315723361 4.060000e-15 93.5
37 TraesCS5A01G280500 chr6A 88.364 275 26 3 1706 1979 483051477 483051208 3.680000e-85 326.0
38 TraesCS5A01G280500 chr6A 84.000 100 6 7 3616 3709 510894381 510894286 1.890000e-13 87.9
39 TraesCS5A01G280500 chr6A 91.525 59 2 3 3339 3395 430278812 430278755 1.140000e-10 78.7
40 TraesCS5A01G280500 chr6A 86.364 66 8 1 3331 3396 417295436 417295500 1.900000e-08 71.3
41 TraesCS5A01G280500 chr3B 95.312 64 2 1 3331 3394 411828359 411828297 2.430000e-17 100.0
42 TraesCS5A01G280500 chr1A 93.846 65 4 0 3331 3395 547729707 547729643 8.720000e-17 99.0
43 TraesCS5A01G280500 chr4D 92.308 65 4 1 3331 3395 395096607 395096670 1.460000e-14 91.6
44 TraesCS5A01G280500 chr4D 83.333 102 11 3 3610 3709 401206920 401206823 5.250000e-14 89.8
45 TraesCS5A01G280500 chr2A 84.375 96 5 6 3618 3713 522505413 522505498 6.790000e-13 86.1
46 TraesCS5A01G280500 chr1D 84.946 93 5 6 3618 3710 199068273 199068356 6.790000e-13 86.1
47 TraesCS5A01G280500 chr1D 90.566 53 5 0 1000 1052 473387606 473387554 1.900000e-08 71.3
48 TraesCS5A01G280500 chr2D 89.552 67 6 1 3331 3397 440476017 440475952 2.440000e-12 84.2
49 TraesCS5A01G280500 chr2B 81.818 110 8 6 3611 3712 534844362 534844257 8.790000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G280500 chr5A 489795345 489799160 3815 False 2681.666667 7047 94.644667 1 3816 3 chr5A.!!$F3 3815
1 TraesCS5A01G280500 chr5B 465236278 465239346 3068 False 1264.000000 3592 91.635750 654 3816 4 chr5B.!!$F2 3162
2 TraesCS5A01G280500 chr5D 387088829 387091822 2993 False 895.500000 2734 92.747167 695 3816 6 chr5D.!!$F2 3121
3 TraesCS5A01G280500 chr7D 104941435 104941947 512 True 475.000000 475 83.463000 3 514 1 chr7D.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.035317 GTCACATGTGCACCAGAGGA 59.965 55.0 21.38 7.40 0.00 3.71 F
844 851 0.102300 CCGCAGTCACACATCGGATA 59.898 55.0 0.00 0.00 37.41 2.59 F
878 885 0.105778 CCTTCCTCCTCCAATCGCTC 59.894 60.0 0.00 0.00 0.00 5.03 F
1962 2023 0.252479 CTCCAGCTCCATGCAAGAGT 59.748 55.0 16.08 3.62 45.94 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 1353 0.392461 CGGATCAAAGCGGAAGGGAA 60.392 55.000 0.0 0.0 0.00 3.97 R
2541 2626 0.107508 CGATCAATCCAGCCACCTGT 60.108 55.000 0.0 0.0 37.38 4.00 R
2700 2786 1.559682 ACCCATACAAAGAGCACCGAT 59.440 47.619 0.0 0.0 0.00 4.18 R
3370 3461 0.389426 TTCGAGAGTACGCCAAAGGC 60.389 55.000 0.0 0.0 46.75 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.007398 CCATCTAACCCTAGATCTGGCAC 59.993 52.174 5.18 0.00 42.04 5.01
25 26 2.679082 TCTAACCCTAGATCTGGCACC 58.321 52.381 5.18 0.00 0.00 5.01
57 58 3.311048 GCTAAGATGCCGAAGAAGGAAAG 59.689 47.826 0.00 0.00 0.00 2.62
80 81 4.808665 GCATACCTGCTATCCATCAACCAT 60.809 45.833 0.00 0.00 45.32 3.55
81 82 3.219176 ACCTGCTATCCATCAACCATG 57.781 47.619 0.00 0.00 0.00 3.66
84 85 4.141088 ACCTGCTATCCATCAACCATGAAT 60.141 41.667 0.00 0.00 39.49 2.57
88 89 4.828939 GCTATCCATCAACCATGAATCCAA 59.171 41.667 0.00 0.00 39.49 3.53
93 94 4.160814 CCATCAACCATGAATCCAACACAT 59.839 41.667 0.00 0.00 39.49 3.21
94 95 4.787260 TCAACCATGAATCCAACACATG 57.213 40.909 0.00 0.00 40.39 3.21
104 105 2.925724 TCCAACACATGTTCCGTCTTT 58.074 42.857 0.00 0.00 35.83 2.52
112 113 3.997021 ACATGTTCCGTCTTTCAGATGTC 59.003 43.478 0.00 0.00 29.27 3.06
113 114 3.744238 TGTTCCGTCTTTCAGATGTCA 57.256 42.857 0.00 0.00 29.27 3.58
115 116 4.245660 TGTTCCGTCTTTCAGATGTCATC 58.754 43.478 4.52 4.52 29.27 2.92
116 117 4.245660 GTTCCGTCTTTCAGATGTCATCA 58.754 43.478 15.20 0.00 29.27 3.07
117 118 4.115401 TCCGTCTTTCAGATGTCATCAG 57.885 45.455 15.20 7.23 29.27 2.90
127 128 2.504585 AGATGTCATCAGTGCAGACCAT 59.495 45.455 15.20 6.11 0.00 3.55
152 153 1.550524 TGCATTCGCTCCTGAACTACT 59.449 47.619 0.00 0.00 39.64 2.57
166 167 0.608640 ACTACTTCCCAAGCTCCACG 59.391 55.000 0.00 0.00 0.00 4.94
168 169 1.476845 TACTTCCCAAGCTCCACGCA 61.477 55.000 0.00 0.00 42.61 5.24
188 189 3.342627 CGTTGGAGCAAACGCCGA 61.343 61.111 6.44 0.00 45.47 5.54
209 210 1.597027 CAACGGCGGAGTCAAAGGT 60.597 57.895 13.24 0.00 0.00 3.50
214 215 0.321653 GGCGGAGTCAAAGGTCACAT 60.322 55.000 0.00 0.00 0.00 3.21
217 218 1.800586 CGGAGTCAAAGGTCACATGTG 59.199 52.381 20.18 20.18 0.00 3.21
223 224 1.001048 CAAAGGTCACATGTGCACCAG 60.001 52.381 31.46 22.55 35.02 4.00
225 226 0.035881 AGGTCACATGTGCACCAGAG 59.964 55.000 31.46 5.56 35.02 3.35
227 228 0.035317 GTCACATGTGCACCAGAGGA 59.965 55.000 21.38 7.40 0.00 3.71
233 234 2.103042 GTGCACCAGAGGATGTCGC 61.103 63.158 5.22 0.00 0.00 5.19
235 236 2.202797 CACCAGAGGATGTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
237 238 3.842923 CCAGAGGATGTCGCCGCT 61.843 66.667 0.00 0.00 38.72 5.52
238 239 2.584418 CAGAGGATGTCGCCGCTG 60.584 66.667 0.00 0.00 46.74 5.18
251 252 2.124612 CGCTGCCATGACATCCCA 60.125 61.111 0.00 0.00 0.00 4.37
252 253 1.750018 CGCTGCCATGACATCCCAA 60.750 57.895 0.00 0.00 0.00 4.12
270 271 3.545703 CCAACTTGAACAGACTGGTTCT 58.454 45.455 7.51 0.00 45.74 3.01
281 282 3.620374 CAGACTGGTTCTCAAATCCATCG 59.380 47.826 0.00 0.00 28.96 3.84
283 284 2.026822 ACTGGTTCTCAAATCCATCGCT 60.027 45.455 0.00 0.00 0.00 4.93
284 285 3.197766 ACTGGTTCTCAAATCCATCGCTA 59.802 43.478 0.00 0.00 0.00 4.26
288 289 2.821546 TCTCAAATCCATCGCTAACCG 58.178 47.619 0.00 0.00 38.61 4.44
294 295 2.336945 TCCATCGCTAACCGTAGAGA 57.663 50.000 0.00 0.00 40.00 3.10
336 337 8.105829 AGAAGAATCTGGAGCTTCTTTATTCAA 58.894 33.333 13.56 0.00 44.22 2.69
343 344 5.705441 TGGAGCTTCTTTATTCAACATCGTT 59.295 36.000 0.00 0.00 0.00 3.85
348 349 6.533819 TTCTTTATTCAACATCGTTGTCGT 57.466 33.333 6.74 0.00 34.06 4.34
351 352 1.842720 TTCAACATCGTTGTCGTCGT 58.157 45.000 6.74 0.00 34.06 4.34
355 356 0.596600 ACATCGTTGTCGTCGTTGCT 60.597 50.000 0.00 0.00 38.33 3.91
373 374 0.784778 CTGAAGCCAAGACGTCGAAC 59.215 55.000 10.46 1.25 0.00 3.95
374 375 0.103390 TGAAGCCAAGACGTCGAACA 59.897 50.000 10.46 2.57 0.00 3.18
377 378 2.736144 AGCCAAGACGTCGAACAATA 57.264 45.000 10.46 0.00 0.00 1.90
393 394 7.743400 GTCGAACAATACAAAAACCTAAGCTAC 59.257 37.037 0.00 0.00 0.00 3.58
400 401 4.288887 ACAAAAACCTAAGCTACTAGGGCT 59.711 41.667 14.67 6.65 42.57 5.19
401 402 4.757019 AAAACCTAAGCTACTAGGGCTC 57.243 45.455 14.67 0.00 42.57 4.70
404 405 5.342361 AACCTAAGCTACTAGGGCTCTAT 57.658 43.478 14.67 1.65 42.57 1.98
408 409 6.045813 ACCTAAGCTACTAGGGCTCTATAACT 59.954 42.308 14.67 0.00 42.57 2.24
409 410 7.239353 ACCTAAGCTACTAGGGCTCTATAACTA 59.761 40.741 14.67 0.87 42.57 2.24
415 417 8.640651 GCTACTAGGGCTCTATAACTAAAACTT 58.359 37.037 0.00 0.00 0.00 2.66
460 463 3.703127 GACCCCCTCACCACCGAC 61.703 72.222 0.00 0.00 0.00 4.79
480 483 3.691342 CCAAGAGGTCACCGCCGA 61.691 66.667 0.00 0.00 0.00 5.54
514 517 1.430369 AAGGGTTGGCTCTCTTGGCT 61.430 55.000 0.00 0.00 0.00 4.75
515 518 1.075659 GGGTTGGCTCTCTTGGCTT 59.924 57.895 0.00 0.00 0.00 4.35
516 519 0.962855 GGGTTGGCTCTCTTGGCTTC 60.963 60.000 0.00 0.00 0.00 3.86
517 520 1.301677 GGTTGGCTCTCTTGGCTTCG 61.302 60.000 0.00 0.00 0.00 3.79
518 521 0.320771 GTTGGCTCTCTTGGCTTCGA 60.321 55.000 0.00 0.00 0.00 3.71
519 522 0.615331 TTGGCTCTCTTGGCTTCGAT 59.385 50.000 0.00 0.00 0.00 3.59
520 523 0.107993 TGGCTCTCTTGGCTTCGATG 60.108 55.000 0.00 0.00 0.00 3.84
521 524 0.813210 GGCTCTCTTGGCTTCGATGG 60.813 60.000 0.00 0.00 0.00 3.51
522 525 1.435408 GCTCTCTTGGCTTCGATGGC 61.435 60.000 16.79 16.79 0.00 4.40
523 526 0.177604 CTCTCTTGGCTTCGATGGCT 59.822 55.000 22.62 0.00 0.00 4.75
524 527 1.410517 CTCTCTTGGCTTCGATGGCTA 59.589 52.381 22.62 15.66 0.00 3.93
525 528 1.410517 TCTCTTGGCTTCGATGGCTAG 59.589 52.381 23.05 23.05 36.89 3.42
526 529 0.465705 TCTTGGCTTCGATGGCTAGG 59.534 55.000 26.30 14.99 36.41 3.02
527 530 0.533755 CTTGGCTTCGATGGCTAGGG 60.534 60.000 22.62 8.76 33.35 3.53
528 531 1.271840 TTGGCTTCGATGGCTAGGGT 61.272 55.000 22.62 0.00 0.00 4.34
529 532 1.271840 TGGCTTCGATGGCTAGGGTT 61.272 55.000 22.62 0.00 0.00 4.11
530 533 0.815615 GGCTTCGATGGCTAGGGTTG 60.816 60.000 16.43 0.00 0.00 3.77
531 534 0.815615 GCTTCGATGGCTAGGGTTGG 60.816 60.000 0.00 0.00 0.00 3.77
532 535 0.815615 CTTCGATGGCTAGGGTTGGC 60.816 60.000 0.00 0.00 0.00 4.52
533 536 1.558167 TTCGATGGCTAGGGTTGGCA 61.558 55.000 0.00 0.00 43.90 4.92
534 537 1.524621 CGATGGCTAGGGTTGGCAG 60.525 63.158 0.00 0.00 43.06 4.85
535 538 1.152881 GATGGCTAGGGTTGGCAGG 60.153 63.158 0.00 0.00 43.06 4.85
536 539 3.364907 ATGGCTAGGGTTGGCAGGC 62.365 63.158 0.00 0.00 43.06 4.85
537 540 3.732849 GGCTAGGGTTGGCAGGCT 61.733 66.667 0.00 0.00 31.41 4.58
538 541 2.375345 GGCTAGGGTTGGCAGGCTA 61.375 63.158 0.00 0.00 31.41 3.93
539 542 1.709994 GGCTAGGGTTGGCAGGCTAT 61.710 60.000 0.00 0.00 31.41 2.97
540 543 1.056660 GCTAGGGTTGGCAGGCTATA 58.943 55.000 0.00 0.00 0.00 1.31
541 544 1.420138 GCTAGGGTTGGCAGGCTATAA 59.580 52.381 0.00 0.00 0.00 0.98
542 545 2.040412 GCTAGGGTTGGCAGGCTATAAT 59.960 50.000 0.00 0.00 0.00 1.28
543 546 3.498661 GCTAGGGTTGGCAGGCTATAATT 60.499 47.826 0.00 0.00 0.00 1.40
544 547 4.263331 GCTAGGGTTGGCAGGCTATAATTA 60.263 45.833 0.00 0.00 0.00 1.40
545 548 4.806952 AGGGTTGGCAGGCTATAATTAA 57.193 40.909 0.00 0.00 0.00 1.40
546 549 5.339423 AGGGTTGGCAGGCTATAATTAAT 57.661 39.130 0.00 0.00 0.00 1.40
547 550 5.325239 AGGGTTGGCAGGCTATAATTAATC 58.675 41.667 0.00 0.00 0.00 1.75
548 551 5.076873 GGGTTGGCAGGCTATAATTAATCA 58.923 41.667 0.00 0.00 0.00 2.57
549 552 5.183904 GGGTTGGCAGGCTATAATTAATCAG 59.816 44.000 0.00 0.00 0.00 2.90
550 553 6.003950 GGTTGGCAGGCTATAATTAATCAGA 58.996 40.000 0.00 0.00 0.00 3.27
551 554 6.660949 GGTTGGCAGGCTATAATTAATCAGAT 59.339 38.462 0.00 0.00 0.00 2.90
552 555 7.148171 GGTTGGCAGGCTATAATTAATCAGATC 60.148 40.741 0.00 0.00 0.00 2.75
553 556 6.418101 TGGCAGGCTATAATTAATCAGATCC 58.582 40.000 0.00 0.00 0.00 3.36
554 557 6.012596 TGGCAGGCTATAATTAATCAGATCCA 60.013 38.462 0.00 0.00 0.00 3.41
555 558 7.059156 GGCAGGCTATAATTAATCAGATCCAT 58.941 38.462 0.00 0.00 0.00 3.41
556 559 7.228308 GGCAGGCTATAATTAATCAGATCCATC 59.772 40.741 0.00 0.00 0.00 3.51
557 560 7.228308 GCAGGCTATAATTAATCAGATCCATCC 59.772 40.741 0.00 0.00 0.00 3.51
558 561 8.492782 CAGGCTATAATTAATCAGATCCATCCT 58.507 37.037 0.00 0.00 0.00 3.24
559 562 9.066842 AGGCTATAATTAATCAGATCCATCCTT 57.933 33.333 0.00 0.00 0.00 3.36
560 563 9.692325 GGCTATAATTAATCAGATCCATCCTTT 57.308 33.333 0.00 0.00 0.00 3.11
577 580 6.609237 ATCCTTTGATGAACGTATGTCATG 57.391 37.500 5.96 0.00 0.00 3.07
578 581 5.487433 TCCTTTGATGAACGTATGTCATGT 58.513 37.500 5.96 0.00 0.00 3.21
579 582 5.351189 TCCTTTGATGAACGTATGTCATGTG 59.649 40.000 5.96 0.00 0.00 3.21
580 583 5.447683 CCTTTGATGAACGTATGTCATGTGG 60.448 44.000 5.96 0.39 0.00 4.17
581 584 4.464069 TGATGAACGTATGTCATGTGGA 57.536 40.909 5.96 0.00 0.00 4.02
582 585 4.432712 TGATGAACGTATGTCATGTGGAG 58.567 43.478 5.96 0.00 0.00 3.86
583 586 3.245518 TGAACGTATGTCATGTGGAGG 57.754 47.619 0.00 0.00 0.00 4.30
584 587 2.565391 TGAACGTATGTCATGTGGAGGT 59.435 45.455 0.00 0.00 0.00 3.85
585 588 3.007506 TGAACGTATGTCATGTGGAGGTT 59.992 43.478 0.00 0.00 0.00 3.50
586 589 3.695830 ACGTATGTCATGTGGAGGTTT 57.304 42.857 0.00 0.00 0.00 3.27
587 590 3.334691 ACGTATGTCATGTGGAGGTTTG 58.665 45.455 0.00 0.00 0.00 2.93
588 591 3.244422 ACGTATGTCATGTGGAGGTTTGT 60.244 43.478 0.00 0.00 0.00 2.83
589 592 3.751175 CGTATGTCATGTGGAGGTTTGTT 59.249 43.478 0.00 0.00 0.00 2.83
590 593 4.142902 CGTATGTCATGTGGAGGTTTGTTC 60.143 45.833 0.00 0.00 0.00 3.18
591 594 3.576078 TGTCATGTGGAGGTTTGTTCT 57.424 42.857 0.00 0.00 0.00 3.01
592 595 3.897239 TGTCATGTGGAGGTTTGTTCTT 58.103 40.909 0.00 0.00 0.00 2.52
593 596 3.631686 TGTCATGTGGAGGTTTGTTCTTG 59.368 43.478 0.00 0.00 0.00 3.02
594 597 3.004734 GTCATGTGGAGGTTTGTTCTTGG 59.995 47.826 0.00 0.00 0.00 3.61
595 598 1.398692 TGTGGAGGTTTGTTCTTGGC 58.601 50.000 0.00 0.00 0.00 4.52
596 599 1.064017 TGTGGAGGTTTGTTCTTGGCT 60.064 47.619 0.00 0.00 0.00 4.75
597 600 1.338020 GTGGAGGTTTGTTCTTGGCTG 59.662 52.381 0.00 0.00 0.00 4.85
598 601 1.064017 TGGAGGTTTGTTCTTGGCTGT 60.064 47.619 0.00 0.00 0.00 4.40
599 602 1.338020 GGAGGTTTGTTCTTGGCTGTG 59.662 52.381 0.00 0.00 0.00 3.66
600 603 2.024414 GAGGTTTGTTCTTGGCTGTGT 58.976 47.619 0.00 0.00 0.00 3.72
601 604 1.750778 AGGTTTGTTCTTGGCTGTGTG 59.249 47.619 0.00 0.00 0.00 3.82
602 605 1.476488 GGTTTGTTCTTGGCTGTGTGT 59.524 47.619 0.00 0.00 0.00 3.72
603 606 2.685897 GGTTTGTTCTTGGCTGTGTGTA 59.314 45.455 0.00 0.00 0.00 2.90
604 607 3.317993 GGTTTGTTCTTGGCTGTGTGTAT 59.682 43.478 0.00 0.00 0.00 2.29
605 608 4.202111 GGTTTGTTCTTGGCTGTGTGTATT 60.202 41.667 0.00 0.00 0.00 1.89
606 609 5.348164 GTTTGTTCTTGGCTGTGTGTATTT 58.652 37.500 0.00 0.00 0.00 1.40
607 610 5.590530 TTGTTCTTGGCTGTGTGTATTTT 57.409 34.783 0.00 0.00 0.00 1.82
608 611 4.930963 TGTTCTTGGCTGTGTGTATTTTG 58.069 39.130 0.00 0.00 0.00 2.44
609 612 4.642437 TGTTCTTGGCTGTGTGTATTTTGA 59.358 37.500 0.00 0.00 0.00 2.69
610 613 5.126222 TGTTCTTGGCTGTGTGTATTTTGAA 59.874 36.000 0.00 0.00 0.00 2.69
611 614 6.183360 TGTTCTTGGCTGTGTGTATTTTGAAT 60.183 34.615 0.00 0.00 0.00 2.57
612 615 5.771469 TCTTGGCTGTGTGTATTTTGAATG 58.229 37.500 0.00 0.00 0.00 2.67
613 616 5.301551 TCTTGGCTGTGTGTATTTTGAATGT 59.698 36.000 0.00 0.00 0.00 2.71
614 617 5.119931 TGGCTGTGTGTATTTTGAATGTC 57.880 39.130 0.00 0.00 0.00 3.06
615 618 4.826733 TGGCTGTGTGTATTTTGAATGTCT 59.173 37.500 0.00 0.00 0.00 3.41
616 619 5.301551 TGGCTGTGTGTATTTTGAATGTCTT 59.698 36.000 0.00 0.00 0.00 3.01
617 620 5.858581 GGCTGTGTGTATTTTGAATGTCTTC 59.141 40.000 0.00 0.00 0.00 2.87
618 621 6.437928 GCTGTGTGTATTTTGAATGTCTTCA 58.562 36.000 0.00 0.00 39.62 3.02
619 622 6.917477 GCTGTGTGTATTTTGAATGTCTTCAA 59.083 34.615 0.00 0.00 46.92 2.69
632 635 8.408043 TGAATGTCTTCAAATATCTTGTTGGT 57.592 30.769 0.00 0.00 38.43 3.67
633 636 8.298854 TGAATGTCTTCAAATATCTTGTTGGTG 58.701 33.333 0.00 0.00 38.43 4.17
634 637 7.765695 ATGTCTTCAAATATCTTGTTGGTGT 57.234 32.000 0.00 0.00 0.00 4.16
635 638 8.862325 ATGTCTTCAAATATCTTGTTGGTGTA 57.138 30.769 0.00 0.00 0.00 2.90
636 639 8.322906 TGTCTTCAAATATCTTGTTGGTGTAG 57.677 34.615 0.00 0.00 0.00 2.74
637 640 8.154203 TGTCTTCAAATATCTTGTTGGTGTAGA 58.846 33.333 0.00 0.00 0.00 2.59
638 641 8.660373 GTCTTCAAATATCTTGTTGGTGTAGAG 58.340 37.037 0.00 0.00 0.00 2.43
639 642 7.824289 TCTTCAAATATCTTGTTGGTGTAGAGG 59.176 37.037 0.00 0.00 0.00 3.69
640 643 5.880332 TCAAATATCTTGTTGGTGTAGAGGC 59.120 40.000 0.00 0.00 0.00 4.70
641 644 5.700402 AATATCTTGTTGGTGTAGAGGCT 57.300 39.130 0.00 0.00 0.00 4.58
642 645 6.808321 AATATCTTGTTGGTGTAGAGGCTA 57.192 37.500 0.00 0.00 0.00 3.93
643 646 7.380423 AATATCTTGTTGGTGTAGAGGCTAT 57.620 36.000 0.00 0.00 0.00 2.97
644 647 4.471904 TCTTGTTGGTGTAGAGGCTATG 57.528 45.455 0.00 0.00 0.00 2.23
645 648 3.838317 TCTTGTTGGTGTAGAGGCTATGT 59.162 43.478 0.00 0.00 0.00 2.29
646 649 3.610040 TGTTGGTGTAGAGGCTATGTG 57.390 47.619 0.00 0.00 0.00 3.21
647 650 2.903784 TGTTGGTGTAGAGGCTATGTGT 59.096 45.455 0.00 0.00 0.00 3.72
648 651 4.090819 TGTTGGTGTAGAGGCTATGTGTA 58.909 43.478 0.00 0.00 0.00 2.90
649 652 4.714802 TGTTGGTGTAGAGGCTATGTGTAT 59.285 41.667 0.00 0.00 0.00 2.29
650 653 5.163447 TGTTGGTGTAGAGGCTATGTGTATC 60.163 44.000 0.00 0.00 0.00 2.24
651 654 4.804597 TGGTGTAGAGGCTATGTGTATCT 58.195 43.478 0.00 0.00 0.00 1.98
652 655 4.584743 TGGTGTAGAGGCTATGTGTATCTG 59.415 45.833 0.00 0.00 0.00 2.90
662 665 3.944055 ATGTGTATCTGGTATCCTCGC 57.056 47.619 0.00 0.00 0.00 5.03
663 666 2.661718 TGTGTATCTGGTATCCTCGCA 58.338 47.619 0.00 0.00 0.00 5.10
720 724 2.029290 GTGAAGGTCTGTCCACGTGTAT 60.029 50.000 15.65 0.00 39.02 2.29
722 726 0.246635 AGGTCTGTCCACGTGTATGC 59.753 55.000 15.65 2.01 39.02 3.14
835 842 1.372872 CACATCGTCCGCAGTCACA 60.373 57.895 0.00 0.00 0.00 3.58
844 851 0.102300 CCGCAGTCACACATCGGATA 59.898 55.000 0.00 0.00 37.41 2.59
878 885 0.105778 CCTTCCTCCTCCAATCGCTC 59.894 60.000 0.00 0.00 0.00 5.03
880 887 1.676678 TTCCTCCTCCAATCGCTCGG 61.677 60.000 0.00 0.00 0.00 4.63
1115 1132 2.125106 GTTGCTCGGGGAATCGCT 60.125 61.111 0.00 0.00 0.00 4.93
1191 1208 1.050767 GAAAGGACAACGACGACGAG 58.949 55.000 15.32 8.51 42.66 4.18
1194 1211 1.154263 GGACAACGACGACGAGGAG 60.154 63.158 15.32 3.15 42.66 3.69
1195 1212 1.154263 GACAACGACGACGAGGAGG 60.154 63.158 15.32 1.02 42.66 4.30
1196 1213 1.572085 GACAACGACGACGAGGAGGA 61.572 60.000 15.32 0.00 42.66 3.71
1197 1214 1.134901 CAACGACGACGAGGAGGAG 59.865 63.158 15.32 0.00 42.66 3.69
1336 1353 2.890945 GGCAAGGTACAGATTGGTTTGT 59.109 45.455 0.00 0.00 0.00 2.83
1349 1366 1.037493 GGTTTGTTCCCTTCCGCTTT 58.963 50.000 0.00 0.00 0.00 3.51
1355 1372 0.392461 TTCCCTTCCGCTTTGATCCG 60.392 55.000 0.00 0.00 0.00 4.18
1502 1563 8.076714 TCAGCGAGCATATGTTCTAATTTAAG 57.923 34.615 16.33 1.17 0.00 1.85
1503 1564 7.710907 TCAGCGAGCATATGTTCTAATTTAAGT 59.289 33.333 16.33 0.00 0.00 2.24
1504 1565 8.978539 CAGCGAGCATATGTTCTAATTTAAGTA 58.021 33.333 16.33 0.00 0.00 2.24
1505 1566 9.712305 AGCGAGCATATGTTCTAATTTAAGTAT 57.288 29.630 16.33 0.00 0.00 2.12
1600 1661 2.159028 GGTCTGCTGAAGTATCTGTCCC 60.159 54.545 0.00 0.00 0.00 4.46
1610 1671 6.640518 TGAAGTATCTGTCCCTGTTATTCAC 58.359 40.000 0.00 0.00 0.00 3.18
1646 1707 5.005740 TGAGCATCTTCAGTTTTACTGCAT 58.994 37.500 1.98 0.00 40.33 3.96
1691 1752 5.234329 GCATTCTAAATCGCAGCTACTACAA 59.766 40.000 0.00 0.00 0.00 2.41
1692 1753 6.641062 CATTCTAAATCGCAGCTACTACAAC 58.359 40.000 0.00 0.00 0.00 3.32
1693 1754 5.319140 TCTAAATCGCAGCTACTACAACA 57.681 39.130 0.00 0.00 0.00 3.33
1960 2021 1.077930 GCTCCAGCTCCATGCAAGA 60.078 57.895 0.00 0.00 45.94 3.02
1961 2022 1.096386 GCTCCAGCTCCATGCAAGAG 61.096 60.000 11.75 11.75 45.94 2.85
1962 2023 0.252479 CTCCAGCTCCATGCAAGAGT 59.748 55.000 16.08 3.62 45.94 3.24
1988 2049 2.517959 CAAAGGGCTCTTGAATGGTGA 58.482 47.619 0.00 0.00 32.75 4.02
2065 2126 2.554636 CGCAACTTTGAGCTGGGCA 61.555 57.895 0.00 0.00 0.00 5.36
2139 2200 1.137872 CTTCGCCAGCTCTTCAGGTAT 59.862 52.381 0.00 0.00 0.00 2.73
2190 2251 2.028930 CCTTCTTAGTTCTCACAGGCGT 60.029 50.000 0.00 0.00 0.00 5.68
2191 2252 3.555168 CCTTCTTAGTTCTCACAGGCGTT 60.555 47.826 0.00 0.00 0.00 4.84
2301 2363 2.753452 AGACTGATTGCATTGCTTCCTG 59.247 45.455 10.49 5.39 0.00 3.86
2313 2375 2.764269 TGCTTCCTGGCCTTATCTAGT 58.236 47.619 3.32 0.00 0.00 2.57
2314 2376 3.923648 TGCTTCCTGGCCTTATCTAGTA 58.076 45.455 3.32 0.00 0.00 1.82
2333 2395 1.009222 GGCTATTCATGCAGTGCGC 60.009 57.895 11.20 0.00 42.89 6.09
2355 2417 1.259770 GTTCTGTTTCGTCGGTGTTCC 59.740 52.381 0.00 0.00 0.00 3.62
2378 2440 6.884295 TCCTTTGTATGGGTTTTCTCTATGTG 59.116 38.462 0.00 0.00 0.00 3.21
2502 2564 2.202756 GCTCTTCAGGTACGCCCG 60.203 66.667 0.00 0.00 38.74 6.13
2519 2604 1.202582 CCCGAACTCTCACGTTCTCAT 59.797 52.381 0.00 0.00 40.79 2.90
2520 2605 2.422479 CCCGAACTCTCACGTTCTCATA 59.578 50.000 0.00 0.00 40.79 2.15
2521 2606 3.487711 CCCGAACTCTCACGTTCTCATAG 60.488 52.174 0.00 0.00 40.79 2.23
2522 2607 3.487711 CCGAACTCTCACGTTCTCATAGG 60.488 52.174 0.00 0.00 40.79 2.57
2523 2608 3.127203 CGAACTCTCACGTTCTCATAGGT 59.873 47.826 0.00 0.00 40.79 3.08
2524 2609 4.416620 GAACTCTCACGTTCTCATAGGTG 58.583 47.826 0.00 0.00 40.03 4.00
2525 2610 3.687125 ACTCTCACGTTCTCATAGGTGA 58.313 45.455 0.00 0.00 39.73 4.02
2537 2622 5.606348 CTCATAGGTGAGCCTTCTTAGTT 57.394 43.478 0.00 0.00 44.18 2.24
2538 2623 5.596845 CTCATAGGTGAGCCTTCTTAGTTC 58.403 45.833 0.00 0.00 44.18 3.01
2539 2624 5.273208 TCATAGGTGAGCCTTCTTAGTTCT 58.727 41.667 0.00 0.00 44.18 3.01
2540 2625 6.432581 TCATAGGTGAGCCTTCTTAGTTCTA 58.567 40.000 0.00 0.00 44.18 2.10
2541 2626 6.895756 TCATAGGTGAGCCTTCTTAGTTCTAA 59.104 38.462 0.00 0.00 44.18 2.10
2546 2631 4.838986 TGAGCCTTCTTAGTTCTAACAGGT 59.161 41.667 11.57 3.52 0.00 4.00
2700 2786 0.657312 CAGTGCGCAGTTCTGTTTCA 59.343 50.000 16.79 0.00 0.00 2.69
2707 2793 1.400242 GCAGTTCTGTTTCATCGGTGC 60.400 52.381 0.00 0.00 0.00 5.01
2731 2817 6.458888 GCTCTTTGTATGGGTTTTCTCTATGC 60.459 42.308 0.00 0.00 0.00 3.14
2753 2841 5.758296 TGCTCTAAAACAGTGTCTACTTTGG 59.242 40.000 0.00 0.00 34.07 3.28
2760 2848 5.801531 ACAGTGTCTACTTTGGTGATGTA 57.198 39.130 0.00 0.00 34.07 2.29
2841 2929 2.490903 GCTGTGCAGAATTTCCATCTGT 59.509 45.455 3.02 0.00 44.88 3.41
2934 3025 8.193953 TGTTATCCTATGATCATGTCTTAGCA 57.806 34.615 18.72 9.87 34.72 3.49
2943 3034 2.497273 TCATGTCTTAGCAGTGCAGCTA 59.503 45.455 19.20 3.66 44.50 3.32
2975 3066 6.683974 ATAGTTAAAGCACTATGGTTGCAG 57.316 37.500 6.45 0.00 38.36 4.41
2977 3068 5.556915 AGTTAAAGCACTATGGTTGCAGTA 58.443 37.500 6.45 0.00 38.20 2.74
2979 3070 4.970662 AAAGCACTATGGTTGCAGTATG 57.029 40.909 6.45 0.00 38.20 2.39
2980 3071 2.923121 AGCACTATGGTTGCAGTATGG 58.077 47.619 6.45 0.00 35.86 2.74
2981 3072 2.239654 AGCACTATGGTTGCAGTATGGT 59.760 45.455 6.45 0.00 35.86 3.55
2982 3073 3.016736 GCACTATGGTTGCAGTATGGTT 58.983 45.455 0.00 0.00 35.86 3.67
2983 3074 3.181497 GCACTATGGTTGCAGTATGGTTG 60.181 47.826 0.00 0.00 35.86 3.77
2984 3075 3.378112 CACTATGGTTGCAGTATGGTTGG 59.622 47.826 0.00 0.00 35.86 3.77
2985 3076 2.897271 ATGGTTGCAGTATGGTTGGA 57.103 45.000 0.00 0.00 35.86 3.53
2986 3077 2.666272 TGGTTGCAGTATGGTTGGAA 57.334 45.000 0.00 0.00 35.86 3.53
2987 3078 3.168035 TGGTTGCAGTATGGTTGGAAT 57.832 42.857 0.00 0.00 35.86 3.01
2988 3079 2.824936 TGGTTGCAGTATGGTTGGAATG 59.175 45.455 0.00 0.00 35.86 2.67
2989 3080 2.825532 GGTTGCAGTATGGTTGGAATGT 59.174 45.455 0.00 0.00 35.86 2.71
2990 3081 3.119495 GGTTGCAGTATGGTTGGAATGTC 60.119 47.826 0.00 0.00 35.86 3.06
2991 3082 3.719268 TGCAGTATGGTTGGAATGTCT 57.281 42.857 0.00 0.00 35.86 3.41
3032 3123 9.923786 TTTGCATACGTTTCATGTATATGTAAC 57.076 29.630 10.62 10.62 39.67 2.50
3033 3124 8.649973 TGCATACGTTTCATGTATATGTAACA 57.350 30.769 17.70 4.39 41.76 2.41
3034 3125 8.544597 TGCATACGTTTCATGTATATGTAACAC 58.455 33.333 17.70 6.13 41.76 3.32
3035 3126 7.734297 GCATACGTTTCATGTATATGTAACACG 59.266 37.037 17.70 14.18 41.76 4.49
3036 3127 6.578020 ACGTTTCATGTATATGTAACACGG 57.422 37.500 17.70 7.76 41.76 4.94
3037 3128 6.331845 ACGTTTCATGTATATGTAACACGGA 58.668 36.000 17.70 0.00 41.76 4.69
3038 3129 6.474427 ACGTTTCATGTATATGTAACACGGAG 59.526 38.462 17.70 7.23 41.76 4.63
3048 3139 4.877378 TGTAACACGGAGTATGTTCCTT 57.123 40.909 0.00 0.00 41.61 3.36
3063 3154 7.998383 AGTATGTTCCTTTGGTAATATGATGCA 59.002 33.333 0.00 0.00 0.00 3.96
3085 3176 4.977963 CAGTACTTGTTTCTGGTTTGCATG 59.022 41.667 0.00 0.00 0.00 4.06
3104 3195 7.966246 TGCATGCAAAGTTAATCTTTTTCAT 57.034 28.000 20.30 5.44 42.95 2.57
3137 3228 7.554476 GCTCTTAGTTTCTGATTTAGGGAACAT 59.446 37.037 0.00 0.00 0.00 2.71
3172 3263 0.394352 AGCCAACCTAATTGCCCTCG 60.394 55.000 0.00 0.00 36.93 4.63
3173 3264 2.004808 GCCAACCTAATTGCCCTCGC 62.005 60.000 0.00 0.00 36.93 5.03
3192 3283 5.121142 CCTCGCCGTTCTTCTAATTTGTTTA 59.879 40.000 0.00 0.00 0.00 2.01
3193 3284 6.183360 CCTCGCCGTTCTTCTAATTTGTTTAT 60.183 38.462 0.00 0.00 0.00 1.40
3245 3336 9.522804 CTGTTATTACTTCTTGAGGTCAGTATC 57.477 37.037 0.00 0.00 0.00 2.24
3332 3423 4.342862 AGTATATGATGGCACGCTTTCT 57.657 40.909 0.00 0.00 0.00 2.52
3336 3427 2.177394 TGATGGCACGCTTTCTTGTA 57.823 45.000 0.00 0.00 0.00 2.41
3337 3428 2.499197 TGATGGCACGCTTTCTTGTAA 58.501 42.857 0.00 0.00 0.00 2.41
3338 3429 2.881513 TGATGGCACGCTTTCTTGTAAA 59.118 40.909 0.00 0.00 0.00 2.01
3339 3430 3.505680 TGATGGCACGCTTTCTTGTAAAT 59.494 39.130 0.00 0.00 0.00 1.40
3340 3431 4.697828 TGATGGCACGCTTTCTTGTAAATA 59.302 37.500 0.00 0.00 0.00 1.40
3341 3432 5.356751 TGATGGCACGCTTTCTTGTAAATAT 59.643 36.000 0.00 0.00 0.00 1.28
3342 3433 5.637006 TGGCACGCTTTCTTGTAAATATT 57.363 34.783 0.00 0.00 0.00 1.28
3343 3434 5.636837 TGGCACGCTTTCTTGTAAATATTC 58.363 37.500 0.00 0.00 0.00 1.75
3344 3435 5.414454 TGGCACGCTTTCTTGTAAATATTCT 59.586 36.000 0.00 0.00 0.00 2.40
3345 3436 6.072175 TGGCACGCTTTCTTGTAAATATTCTT 60.072 34.615 0.00 0.00 0.00 2.52
3346 3437 6.469275 GGCACGCTTTCTTGTAAATATTCTTC 59.531 38.462 0.00 0.00 0.00 2.87
3347 3438 7.244192 GCACGCTTTCTTGTAAATATTCTTCT 58.756 34.615 0.00 0.00 0.00 2.85
3348 3439 7.426743 GCACGCTTTCTTGTAAATATTCTTCTC 59.573 37.037 0.00 0.00 0.00 2.87
3349 3440 8.660373 CACGCTTTCTTGTAAATATTCTTCTCT 58.340 33.333 0.00 0.00 0.00 3.10
3350 3441 8.874816 ACGCTTTCTTGTAAATATTCTTCTCTC 58.125 33.333 0.00 0.00 0.00 3.20
3351 3442 9.092876 CGCTTTCTTGTAAATATTCTTCTCTCT 57.907 33.333 0.00 0.00 0.00 3.10
3367 3458 9.482175 TTCTTCTCTCTTCTATAAAGCTAAGGT 57.518 33.333 0.00 0.00 0.00 3.50
3371 3462 8.798402 TCTCTCTTCTATAAAGCTAAGGTATGC 58.202 37.037 0.00 0.00 0.00 3.14
3372 3463 7.897864 TCTCTTCTATAAAGCTAAGGTATGCC 58.102 38.462 0.00 0.00 0.00 4.40
3387 3478 3.782042 GCCTTTGGCGTACTCTCG 58.218 61.111 0.00 0.00 39.62 4.04
3388 3479 1.214589 GCCTTTGGCGTACTCTCGA 59.785 57.895 0.00 0.00 39.62 4.04
3389 3480 0.389426 GCCTTTGGCGTACTCTCGAA 60.389 55.000 0.00 0.00 39.62 3.71
3390 3481 1.938016 GCCTTTGGCGTACTCTCGAAA 60.938 52.381 0.00 0.00 39.62 3.46
3391 3482 2.409975 CCTTTGGCGTACTCTCGAAAA 58.590 47.619 0.00 0.00 0.00 2.29
3392 3483 2.803956 CCTTTGGCGTACTCTCGAAAAA 59.196 45.455 0.00 0.00 0.00 1.94
3462 3558 5.178797 AGTTGGAAGATAGGAATGAACACG 58.821 41.667 0.00 0.00 0.00 4.49
3496 3592 2.616765 GGTGTTGGGTTTTGCAGGTTTT 60.617 45.455 0.00 0.00 0.00 2.43
3626 3731 9.862149 TTTATTTTCATAAATCCTACTCCCTCC 57.138 33.333 0.00 0.00 35.61 4.30
3630 3735 1.790818 AAATCCTACTCCCTCCGTCC 58.209 55.000 0.00 0.00 0.00 4.79
3645 3750 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3654 3766 8.161425 TCCCAAAATAAGTGTCTTAACTAGCTT 58.839 33.333 0.00 0.00 0.00 3.74
3662 3774 6.320944 AGTGTCTTAACTAGCTTTAGTACGC 58.679 40.000 0.00 0.00 0.00 4.42
3664 3776 6.033302 GTGTCTTAACTAGCTTTAGTACGCAC 59.967 42.308 0.00 0.00 0.00 5.34
3665 3777 5.226772 GTCTTAACTAGCTTTAGTACGCACG 59.773 44.000 0.00 0.00 0.00 5.34
3667 3779 4.685169 AACTAGCTTTAGTACGCACGTA 57.315 40.909 0.00 0.00 0.00 3.57
3678 3790 4.008539 GTACGCACGTACTAAAGCTAGT 57.991 45.455 22.45 0.00 45.30 2.57
3679 3791 3.565905 ACGCACGTACTAAAGCTAGTT 57.434 42.857 0.00 0.00 39.23 2.24
3725 3837 7.775561 GGAGGGAGTATAAGTTTTCATCAACAT 59.224 37.037 0.00 0.00 0.00 2.71
3744 3856 7.819644 TCAACATCTGATGTCCAACAAAATAG 58.180 34.615 22.47 3.37 44.07 1.73
3759 3871 5.445845 ACAAAATAGCCGTTAAGTTTGTCG 58.554 37.500 0.00 0.00 34.94 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.007398 GCCAGATCTAGGGTTAGATGGTG 59.993 52.174 11.63 0.78 44.72 4.17
1 2 3.243724 GCCAGATCTAGGGTTAGATGGT 58.756 50.000 11.63 0.00 44.72 3.55
7 8 1.694693 GGGGTGCCAGATCTAGGGTTA 60.695 57.143 11.63 0.00 0.00 2.85
11 12 1.384502 TGGGGGTGCCAGATCTAGG 60.385 63.158 0.00 0.51 0.00 3.02
13 14 1.692749 GGTGGGGGTGCCAGATCTA 60.693 63.158 0.00 0.00 0.00 1.98
24 25 2.375345 ATCTTAGCCGTGGTGGGGG 61.375 63.158 0.00 0.00 38.63 5.40
25 26 1.153168 CATCTTAGCCGTGGTGGGG 60.153 63.158 0.00 0.00 38.63 4.96
35 36 2.604046 TCCTTCTTCGGCATCTTAGC 57.396 50.000 0.00 0.00 0.00 3.09
57 58 8.923853 TCATGGTTGATGGATAGCAGGTATGC 62.924 46.154 4.25 4.25 41.69 3.14
67 68 5.593909 GTGTTGGATTCATGGTTGATGGATA 59.406 40.000 0.00 0.00 29.30 2.59
80 81 2.811431 GACGGAACATGTGTTGGATTCA 59.189 45.455 0.00 0.00 38.56 2.57
81 82 3.074412 AGACGGAACATGTGTTGGATTC 58.926 45.455 0.00 0.00 38.56 2.52
84 85 2.631160 AAGACGGAACATGTGTTGGA 57.369 45.000 0.00 0.00 38.56 3.53
88 89 3.469008 TCTGAAAGACGGAACATGTGT 57.531 42.857 0.00 0.00 38.67 3.72
104 105 2.093816 GGTCTGCACTGATGACATCTGA 60.094 50.000 24.29 5.86 32.84 3.27
127 128 3.118629 AGTTCAGGAGCGAATGCAGATTA 60.119 43.478 0.00 0.00 46.23 1.75
166 167 1.082756 CGTTTGCTCCAACGTCTGC 60.083 57.895 7.86 0.00 0.00 4.26
168 169 2.251642 GGCGTTTGCTCCAACGTCT 61.252 57.895 14.86 0.00 42.25 4.18
173 174 3.342627 CGTCGGCGTTTGCTCCAA 61.343 61.111 6.85 0.00 42.25 3.53
198 199 1.537202 GCACATGTGACCTTTGACTCC 59.463 52.381 29.80 2.97 0.00 3.85
202 203 1.317613 GGTGCACATGTGACCTTTGA 58.682 50.000 29.80 1.98 32.09 2.69
204 205 1.133823 TCTGGTGCACATGTGACCTTT 60.134 47.619 30.51 0.00 34.26 3.11
205 206 0.473755 TCTGGTGCACATGTGACCTT 59.526 50.000 30.51 0.00 34.26 3.50
209 210 0.986527 ATCCTCTGGTGCACATGTGA 59.013 50.000 29.80 11.67 0.00 3.58
214 215 1.293179 CGACATCCTCTGGTGCACA 59.707 57.895 20.43 3.92 0.00 4.57
217 218 2.512515 GGCGACATCCTCTGGTGC 60.513 66.667 0.00 0.00 0.00 5.01
227 228 4.471908 TCATGGCAGCGGCGACAT 62.472 61.111 12.98 6.01 42.47 3.06
233 234 2.903855 GGGATGTCATGGCAGCGG 60.904 66.667 9.80 0.00 0.00 5.52
235 236 0.682209 AGTTGGGATGTCATGGCAGC 60.682 55.000 7.11 7.11 0.00 5.25
237 238 1.075212 TCAAGTTGGGATGTCATGGCA 59.925 47.619 0.60 0.60 0.00 4.92
238 239 1.838112 TCAAGTTGGGATGTCATGGC 58.162 50.000 2.34 0.00 0.00 4.40
242 243 3.136443 AGTCTGTTCAAGTTGGGATGTCA 59.864 43.478 2.34 0.00 0.00 3.58
251 252 4.487714 TGAGAACCAGTCTGTTCAAGTT 57.512 40.909 13.92 5.03 45.62 2.66
252 253 4.487714 TTGAGAACCAGTCTGTTCAAGT 57.512 40.909 13.92 0.00 45.62 3.16
270 271 2.684001 ACGGTTAGCGATGGATTTGA 57.316 45.000 11.70 0.00 0.00 2.69
294 295 3.432588 CTCTGGCGAGACGACCGT 61.433 66.667 0.00 0.00 39.74 4.83
296 297 1.137825 CTTCTCTGGCGAGACGACC 59.862 63.158 8.25 0.00 45.61 4.79
297 298 0.522180 TTCTTCTCTGGCGAGACGAC 59.478 55.000 12.48 0.00 45.61 4.34
299 300 1.403679 AGATTCTTCTCTGGCGAGACG 59.596 52.381 8.25 7.33 45.61 4.18
319 320 5.245531 ACGATGTTGAATAAAGAAGCTCCA 58.754 37.500 0.00 0.00 0.00 3.86
336 337 0.596600 AGCAACGACGACAACGATGT 60.597 50.000 0.00 0.00 44.25 3.06
343 344 1.954146 GGCTTCAGCAACGACGACA 60.954 57.895 0.00 0.00 44.36 4.35
348 349 1.221466 CGTCTTGGCTTCAGCAACGA 61.221 55.000 0.30 0.00 44.36 3.85
351 352 1.221466 CGACGTCTTGGCTTCAGCAA 61.221 55.000 14.70 0.00 44.36 3.91
355 356 0.103390 TGTTCGACGTCTTGGCTTCA 59.897 50.000 14.70 0.69 0.00 3.02
373 374 7.201705 GCCCTAGTAGCTTAGGTTTTTGTATTG 60.202 40.741 10.05 0.00 38.86 1.90
374 375 6.827251 GCCCTAGTAGCTTAGGTTTTTGTATT 59.173 38.462 10.05 0.00 38.86 1.89
377 378 4.288887 AGCCCTAGTAGCTTAGGTTTTTGT 59.711 41.667 10.05 0.00 37.24 2.83
400 401 9.023967 GCGGATCGTTTAAGTTTTAGTTATAGA 57.976 33.333 0.00 0.00 0.00 1.98
401 402 8.810427 TGCGGATCGTTTAAGTTTTAGTTATAG 58.190 33.333 0.00 0.00 0.00 1.31
404 405 6.399880 CGTGCGGATCGTTTAAGTTTTAGTTA 60.400 38.462 0.00 0.00 0.00 2.24
408 409 3.423384 GCGTGCGGATCGTTTAAGTTTTA 60.423 43.478 0.00 0.00 0.00 1.52
409 410 2.663606 GCGTGCGGATCGTTTAAGTTTT 60.664 45.455 0.00 0.00 0.00 2.43
415 417 3.547313 GCGCGTGCGGATCGTTTA 61.547 61.111 16.70 0.00 40.19 2.01
480 483 3.721706 CTTCTGGCGGCTCCCCTT 61.722 66.667 11.43 0.00 0.00 3.95
493 496 0.695347 CCAAGAGAGCCAACCCTTCT 59.305 55.000 0.00 0.00 0.00 2.85
498 501 1.301677 CGAAGCCAAGAGAGCCAACC 61.302 60.000 0.00 0.00 0.00 3.77
504 507 0.177604 AGCCATCGAAGCCAAGAGAG 59.822 55.000 7.15 0.00 0.00 3.20
514 517 1.223487 GCCAACCCTAGCCATCGAA 59.777 57.895 0.00 0.00 0.00 3.71
515 518 1.971505 CTGCCAACCCTAGCCATCGA 61.972 60.000 0.00 0.00 0.00 3.59
516 519 1.524621 CTGCCAACCCTAGCCATCG 60.525 63.158 0.00 0.00 0.00 3.84
517 520 1.152881 CCTGCCAACCCTAGCCATC 60.153 63.158 0.00 0.00 0.00 3.51
518 521 3.010144 CCTGCCAACCCTAGCCAT 58.990 61.111 0.00 0.00 0.00 4.40
519 522 4.047125 GCCTGCCAACCCTAGCCA 62.047 66.667 0.00 0.00 0.00 4.75
520 523 1.709994 ATAGCCTGCCAACCCTAGCC 61.710 60.000 0.00 0.00 0.00 3.93
521 524 1.056660 TATAGCCTGCCAACCCTAGC 58.943 55.000 0.00 0.00 0.00 3.42
522 525 4.373156 AATTATAGCCTGCCAACCCTAG 57.627 45.455 0.00 0.00 0.00 3.02
523 526 5.915744 TTAATTATAGCCTGCCAACCCTA 57.084 39.130 0.00 0.00 0.00 3.53
524 527 4.806952 TTAATTATAGCCTGCCAACCCT 57.193 40.909 0.00 0.00 0.00 4.34
525 528 5.076873 TGATTAATTATAGCCTGCCAACCC 58.923 41.667 0.00 0.00 0.00 4.11
526 529 6.003950 TCTGATTAATTATAGCCTGCCAACC 58.996 40.000 0.00 0.00 0.00 3.77
527 530 7.148171 GGATCTGATTAATTATAGCCTGCCAAC 60.148 40.741 0.00 0.00 0.00 3.77
528 531 6.886459 GGATCTGATTAATTATAGCCTGCCAA 59.114 38.462 0.00 0.00 0.00 4.52
529 532 6.012596 TGGATCTGATTAATTATAGCCTGCCA 60.013 38.462 2.36 0.00 0.00 4.92
530 533 6.418101 TGGATCTGATTAATTATAGCCTGCC 58.582 40.000 2.36 0.00 0.00 4.85
531 534 7.228308 GGATGGATCTGATTAATTATAGCCTGC 59.772 40.741 2.36 0.00 0.00 4.85
532 535 8.492782 AGGATGGATCTGATTAATTATAGCCTG 58.507 37.037 2.36 0.00 0.00 4.85
533 536 8.635647 AGGATGGATCTGATTAATTATAGCCT 57.364 34.615 2.36 0.00 0.00 4.58
534 537 9.692325 AAAGGATGGATCTGATTAATTATAGCC 57.308 33.333 0.00 0.00 0.00 3.93
554 557 6.037500 CACATGACATACGTTCATCAAAGGAT 59.962 38.462 0.00 0.00 0.00 3.24
555 558 5.351189 CACATGACATACGTTCATCAAAGGA 59.649 40.000 0.00 0.00 0.00 3.36
556 559 5.447683 CCACATGACATACGTTCATCAAAGG 60.448 44.000 0.00 0.00 0.00 3.11
557 560 5.351189 TCCACATGACATACGTTCATCAAAG 59.649 40.000 0.00 0.00 0.00 2.77
558 561 5.241662 TCCACATGACATACGTTCATCAAA 58.758 37.500 0.00 0.00 0.00 2.69
559 562 4.826556 TCCACATGACATACGTTCATCAA 58.173 39.130 0.00 0.00 0.00 2.57
560 563 4.432712 CTCCACATGACATACGTTCATCA 58.567 43.478 0.00 0.00 0.00 3.07
561 564 3.804325 CCTCCACATGACATACGTTCATC 59.196 47.826 0.00 0.00 0.00 2.92
562 565 3.197766 ACCTCCACATGACATACGTTCAT 59.802 43.478 0.00 0.00 0.00 2.57
563 566 2.565391 ACCTCCACATGACATACGTTCA 59.435 45.455 0.00 0.00 0.00 3.18
564 567 3.247006 ACCTCCACATGACATACGTTC 57.753 47.619 0.00 0.00 0.00 3.95
565 568 3.695830 AACCTCCACATGACATACGTT 57.304 42.857 0.00 0.00 0.00 3.99
566 569 3.244422 ACAAACCTCCACATGACATACGT 60.244 43.478 0.00 0.00 0.00 3.57
567 570 3.334691 ACAAACCTCCACATGACATACG 58.665 45.455 0.00 0.00 0.00 3.06
568 571 5.003804 AGAACAAACCTCCACATGACATAC 58.996 41.667 0.00 0.00 0.00 2.39
569 572 5.241403 AGAACAAACCTCCACATGACATA 57.759 39.130 0.00 0.00 0.00 2.29
570 573 4.104383 AGAACAAACCTCCACATGACAT 57.896 40.909 0.00 0.00 0.00 3.06
571 574 3.576078 AGAACAAACCTCCACATGACA 57.424 42.857 0.00 0.00 0.00 3.58
572 575 3.004734 CCAAGAACAAACCTCCACATGAC 59.995 47.826 0.00 0.00 0.00 3.06
573 576 3.221771 CCAAGAACAAACCTCCACATGA 58.778 45.455 0.00 0.00 0.00 3.07
574 577 2.288395 GCCAAGAACAAACCTCCACATG 60.288 50.000 0.00 0.00 0.00 3.21
575 578 1.963515 GCCAAGAACAAACCTCCACAT 59.036 47.619 0.00 0.00 0.00 3.21
576 579 1.064017 AGCCAAGAACAAACCTCCACA 60.064 47.619 0.00 0.00 0.00 4.17
577 580 1.338020 CAGCCAAGAACAAACCTCCAC 59.662 52.381 0.00 0.00 0.00 4.02
578 581 1.064017 ACAGCCAAGAACAAACCTCCA 60.064 47.619 0.00 0.00 0.00 3.86
579 582 1.338020 CACAGCCAAGAACAAACCTCC 59.662 52.381 0.00 0.00 0.00 4.30
580 583 2.024414 ACACAGCCAAGAACAAACCTC 58.976 47.619 0.00 0.00 0.00 3.85
581 584 1.750778 CACACAGCCAAGAACAAACCT 59.249 47.619 0.00 0.00 0.00 3.50
582 585 1.476488 ACACACAGCCAAGAACAAACC 59.524 47.619 0.00 0.00 0.00 3.27
583 586 2.939460 ACACACAGCCAAGAACAAAC 57.061 45.000 0.00 0.00 0.00 2.93
584 587 5.590530 AAATACACACAGCCAAGAACAAA 57.409 34.783 0.00 0.00 0.00 2.83
585 588 5.126222 TCAAAATACACACAGCCAAGAACAA 59.874 36.000 0.00 0.00 0.00 2.83
586 589 4.642437 TCAAAATACACACAGCCAAGAACA 59.358 37.500 0.00 0.00 0.00 3.18
587 590 5.181690 TCAAAATACACACAGCCAAGAAC 57.818 39.130 0.00 0.00 0.00 3.01
588 591 5.843673 TTCAAAATACACACAGCCAAGAA 57.156 34.783 0.00 0.00 0.00 2.52
589 592 5.301551 ACATTCAAAATACACACAGCCAAGA 59.698 36.000 0.00 0.00 0.00 3.02
590 593 5.531634 ACATTCAAAATACACACAGCCAAG 58.468 37.500 0.00 0.00 0.00 3.61
591 594 5.301551 AGACATTCAAAATACACACAGCCAA 59.698 36.000 0.00 0.00 0.00 4.52
592 595 4.826733 AGACATTCAAAATACACACAGCCA 59.173 37.500 0.00 0.00 0.00 4.75
593 596 5.376854 AGACATTCAAAATACACACAGCC 57.623 39.130 0.00 0.00 0.00 4.85
594 597 6.437928 TGAAGACATTCAAAATACACACAGC 58.562 36.000 0.00 0.00 42.47 4.40
607 610 8.298854 CACCAACAAGATATTTGAAGACATTCA 58.701 33.333 5.11 0.00 43.72 2.57
608 611 8.299570 ACACCAACAAGATATTTGAAGACATTC 58.700 33.333 5.11 0.00 35.87 2.67
609 612 8.181904 ACACCAACAAGATATTTGAAGACATT 57.818 30.769 5.11 0.00 0.00 2.71
610 613 7.765695 ACACCAACAAGATATTTGAAGACAT 57.234 32.000 5.11 0.00 0.00 3.06
611 614 8.154203 TCTACACCAACAAGATATTTGAAGACA 58.846 33.333 5.11 0.00 0.00 3.41
612 615 8.547967 TCTACACCAACAAGATATTTGAAGAC 57.452 34.615 5.11 0.00 0.00 3.01
613 616 7.824289 CCTCTACACCAACAAGATATTTGAAGA 59.176 37.037 5.11 0.00 0.00 2.87
614 617 7.414540 GCCTCTACACCAACAAGATATTTGAAG 60.415 40.741 5.11 0.00 0.00 3.02
615 618 6.374333 GCCTCTACACCAACAAGATATTTGAA 59.626 38.462 5.11 0.00 0.00 2.69
616 619 5.880332 GCCTCTACACCAACAAGATATTTGA 59.120 40.000 5.11 0.00 0.00 2.69
617 620 5.882557 AGCCTCTACACCAACAAGATATTTG 59.117 40.000 0.00 0.00 0.00 2.32
618 621 6.067217 AGCCTCTACACCAACAAGATATTT 57.933 37.500 0.00 0.00 0.00 1.40
619 622 5.700402 AGCCTCTACACCAACAAGATATT 57.300 39.130 0.00 0.00 0.00 1.28
620 623 6.327626 ACATAGCCTCTACACCAACAAGATAT 59.672 38.462 0.00 0.00 0.00 1.63
621 624 5.661312 ACATAGCCTCTACACCAACAAGATA 59.339 40.000 0.00 0.00 0.00 1.98
622 625 4.471386 ACATAGCCTCTACACCAACAAGAT 59.529 41.667 0.00 0.00 0.00 2.40
623 626 3.838317 ACATAGCCTCTACACCAACAAGA 59.162 43.478 0.00 0.00 0.00 3.02
624 627 3.935203 CACATAGCCTCTACACCAACAAG 59.065 47.826 0.00 0.00 0.00 3.16
625 628 3.326588 ACACATAGCCTCTACACCAACAA 59.673 43.478 0.00 0.00 0.00 2.83
626 629 2.903784 ACACATAGCCTCTACACCAACA 59.096 45.455 0.00 0.00 0.00 3.33
627 630 3.611766 ACACATAGCCTCTACACCAAC 57.388 47.619 0.00 0.00 0.00 3.77
628 631 5.069119 CAGATACACATAGCCTCTACACCAA 59.931 44.000 0.00 0.00 0.00 3.67
629 632 4.584743 CAGATACACATAGCCTCTACACCA 59.415 45.833 0.00 0.00 0.00 4.17
630 633 4.021894 CCAGATACACATAGCCTCTACACC 60.022 50.000 0.00 0.00 0.00 4.16
631 634 4.585162 ACCAGATACACATAGCCTCTACAC 59.415 45.833 0.00 0.00 0.00 2.90
632 635 4.804597 ACCAGATACACATAGCCTCTACA 58.195 43.478 0.00 0.00 0.00 2.74
633 636 6.095720 GGATACCAGATACACATAGCCTCTAC 59.904 46.154 0.00 0.00 0.00 2.59
634 637 6.011540 AGGATACCAGATACACATAGCCTCTA 60.012 42.308 0.00 0.00 24.78 2.43
635 638 5.020132 GGATACCAGATACACATAGCCTCT 58.980 45.833 0.00 0.00 0.00 3.69
636 639 5.020132 AGGATACCAGATACACATAGCCTC 58.980 45.833 0.00 0.00 24.78 4.70
637 640 5.017093 AGGATACCAGATACACATAGCCT 57.983 43.478 0.00 0.00 37.17 4.58
638 641 4.142359 CGAGGATACCAGATACACATAGCC 60.142 50.000 0.00 0.00 37.17 3.93
639 642 4.675671 GCGAGGATACCAGATACACATAGC 60.676 50.000 0.00 0.00 37.17 2.97
640 643 4.459337 TGCGAGGATACCAGATACACATAG 59.541 45.833 0.00 0.00 37.17 2.23
641 644 4.403734 TGCGAGGATACCAGATACACATA 58.596 43.478 0.00 0.00 37.17 2.29
642 645 3.230976 TGCGAGGATACCAGATACACAT 58.769 45.455 0.00 0.00 37.17 3.21
643 646 2.661718 TGCGAGGATACCAGATACACA 58.338 47.619 0.00 0.00 37.17 3.72
644 647 3.728076 TTGCGAGGATACCAGATACAC 57.272 47.619 0.00 0.00 37.17 2.90
645 648 6.605471 AATATTGCGAGGATACCAGATACA 57.395 37.500 0.00 0.00 37.17 2.29
702 706 1.337823 GCATACACGTGGACAGACCTT 60.338 52.381 21.57 0.00 39.86 3.50
720 724 2.267642 GGTACGCCACAGGATGCA 59.732 61.111 0.00 0.00 42.53 3.96
792 796 4.033776 CCCTTTGGCAGCTCGGGA 62.034 66.667 6.63 0.00 37.05 5.14
793 797 4.351054 ACCCTTTGGCAGCTCGGG 62.351 66.667 9.90 9.90 40.79 5.14
862 869 2.127869 CCGAGCGATTGGAGGAGGA 61.128 63.158 0.00 0.00 0.00 3.71
903 910 2.048127 AAGCGGACGAACAGGCTC 60.048 61.111 0.00 0.00 33.99 4.70
949 966 2.325082 CGTGGGCTTCGGGTTTGAG 61.325 63.158 0.00 0.00 0.00 3.02
1058 1075 2.486042 GCGAGACAGACGACCTCC 59.514 66.667 0.00 0.00 0.00 4.30
1191 1208 3.053849 GCAGTCGTCGTCCTCCTCC 62.054 68.421 0.00 0.00 0.00 4.30
1336 1353 0.392461 CGGATCAAAGCGGAAGGGAA 60.392 55.000 0.00 0.00 0.00 3.97
1389 1406 0.951558 CAGGCAGCGTAACAAGGTTT 59.048 50.000 0.00 0.00 0.00 3.27
1502 1563 3.370978 AGCAGTGAACGTGCAATACATAC 59.629 43.478 0.00 0.00 43.82 2.39
1503 1564 3.595173 AGCAGTGAACGTGCAATACATA 58.405 40.909 0.00 0.00 43.82 2.29
1504 1565 2.426522 AGCAGTGAACGTGCAATACAT 58.573 42.857 0.00 0.00 43.82 2.29
1505 1566 1.877637 AGCAGTGAACGTGCAATACA 58.122 45.000 0.00 0.00 43.82 2.29
1600 1661 5.068234 TCGACAGTAAGGGTGAATAACAG 57.932 43.478 0.00 0.00 0.00 3.16
1610 1671 2.363680 AGATGCTCATCGACAGTAAGGG 59.636 50.000 4.41 0.00 42.48 3.95
1646 1707 1.476085 CAACACAGTCCACAGGCAAAA 59.524 47.619 0.00 0.00 0.00 2.44
1691 1752 0.622136 TCTGCAGAAGGATGGCATGT 59.378 50.000 15.67 0.00 36.87 3.21
1692 1753 1.982660 ATCTGCAGAAGGATGGCATG 58.017 50.000 22.50 0.00 36.87 4.06
1693 1754 2.552591 GCTATCTGCAGAAGGATGGCAT 60.553 50.000 22.50 0.00 42.99 4.40
1960 2021 2.023760 AAGAGCCCTTTGCCCCAACT 62.024 55.000 0.00 0.00 42.71 3.16
1961 2022 1.533994 AAGAGCCCTTTGCCCCAAC 60.534 57.895 0.00 0.00 42.71 3.77
1962 2023 1.533753 CAAGAGCCCTTTGCCCCAA 60.534 57.895 0.00 0.00 42.71 4.12
1988 2049 1.339920 TGTCGGTGGCATGACAATGAT 60.340 47.619 19.20 0.00 41.82 2.45
2065 2126 2.883828 CGGACACAGTGGCCTCCTT 61.884 63.158 23.90 0.00 45.79 3.36
2139 2200 1.006571 GAACGTGAGAGTTCGGGCA 60.007 57.895 0.00 0.00 40.68 5.36
2190 2251 8.956533 TTGATGAGTATAACGATCAATCCAAA 57.043 30.769 0.00 0.00 0.00 3.28
2191 2252 9.559732 AATTGATGAGTATAACGATCAATCCAA 57.440 29.630 15.02 0.00 37.65 3.53
2313 2375 1.869774 CGCACTGCATGAATAGCCTA 58.130 50.000 0.00 0.00 0.00 3.93
2314 2376 1.442526 GCGCACTGCATGAATAGCCT 61.443 55.000 0.30 0.00 45.45 4.58
2333 2395 0.872881 ACACCGACGAAACAGAACCG 60.873 55.000 0.00 0.00 0.00 4.44
2355 2417 6.375455 AGCACATAGAGAAAACCCATACAAAG 59.625 38.462 0.00 0.00 0.00 2.77
2378 2440 5.681543 GCAAAGTAAGACACTGTGTTTTAGC 59.318 40.000 20.27 16.54 43.56 3.09
2521 2606 5.148651 TGTTAGAACTAAGAAGGCTCACC 57.851 43.478 0.00 0.00 0.00 4.02
2522 2607 5.172205 CCTGTTAGAACTAAGAAGGCTCAC 58.828 45.833 9.06 0.00 0.00 3.51
2523 2608 4.838986 ACCTGTTAGAACTAAGAAGGCTCA 59.161 41.667 16.61 2.71 35.23 4.26
2524 2609 5.172205 CACCTGTTAGAACTAAGAAGGCTC 58.828 45.833 16.61 0.00 35.23 4.70
2525 2610 4.020128 CCACCTGTTAGAACTAAGAAGGCT 60.020 45.833 16.61 0.00 35.23 4.58
2526 2611 4.254492 CCACCTGTTAGAACTAAGAAGGC 58.746 47.826 16.61 0.00 35.23 4.35
2527 2612 4.020128 AGCCACCTGTTAGAACTAAGAAGG 60.020 45.833 15.73 15.73 36.70 3.46
2528 2613 4.932200 CAGCCACCTGTTAGAACTAAGAAG 59.068 45.833 0.00 0.00 34.31 2.85
2529 2614 4.262894 CCAGCCACCTGTTAGAACTAAGAA 60.263 45.833 0.00 0.00 37.38 2.52
2530 2615 3.260884 CCAGCCACCTGTTAGAACTAAGA 59.739 47.826 0.00 0.00 37.38 2.10
2531 2616 3.260884 TCCAGCCACCTGTTAGAACTAAG 59.739 47.826 0.00 0.00 37.38 2.18
2532 2617 3.244582 TCCAGCCACCTGTTAGAACTAA 58.755 45.455 0.00 0.00 37.38 2.24
2533 2618 2.897350 TCCAGCCACCTGTTAGAACTA 58.103 47.619 0.00 0.00 37.38 2.24
2534 2619 1.729586 TCCAGCCACCTGTTAGAACT 58.270 50.000 0.00 0.00 37.38 3.01
2535 2620 2.749621 CAATCCAGCCACCTGTTAGAAC 59.250 50.000 0.00 0.00 37.38 3.01
2536 2621 2.642311 TCAATCCAGCCACCTGTTAGAA 59.358 45.455 0.00 0.00 37.38 2.10
2537 2622 2.265367 TCAATCCAGCCACCTGTTAGA 58.735 47.619 0.00 0.00 37.38 2.10
2538 2623 2.787473 TCAATCCAGCCACCTGTTAG 57.213 50.000 0.00 0.00 37.38 2.34
2539 2624 2.419990 CGATCAATCCAGCCACCTGTTA 60.420 50.000 0.00 0.00 37.38 2.41
2540 2625 1.679944 CGATCAATCCAGCCACCTGTT 60.680 52.381 0.00 0.00 37.38 3.16
2541 2626 0.107508 CGATCAATCCAGCCACCTGT 60.108 55.000 0.00 0.00 37.38 4.00
2546 2631 4.343814 TGAGTATAACGATCAATCCAGCCA 59.656 41.667 0.00 0.00 0.00 4.75
2631 2716 6.743575 AGCAATACAACCAGTCTTGATAAC 57.256 37.500 0.00 0.00 36.67 1.89
2689 2774 2.037772 AGAGCACCGATGAAACAGAACT 59.962 45.455 0.00 0.00 0.00 3.01
2700 2786 1.559682 ACCCATACAAAGAGCACCGAT 59.440 47.619 0.00 0.00 0.00 4.18
2707 2793 6.825721 AGCATAGAGAAAACCCATACAAAGAG 59.174 38.462 0.00 0.00 0.00 2.85
2731 2817 6.984474 TCACCAAAGTAGACACTGTTTTAGAG 59.016 38.462 0.00 0.00 34.36 2.43
2753 2841 7.254117 CCTTGTCGTAAATGATCTGTACATCAC 60.254 40.741 1.29 0.00 35.57 3.06
2760 2848 4.819105 TCCCTTGTCGTAAATGATCTGT 57.181 40.909 0.00 0.00 0.00 3.41
2895 2986 8.483758 TCATAGGATAACAAGTCCCTTCTAAAC 58.516 37.037 0.00 0.00 36.36 2.01
2913 3004 6.699366 CACTGCTAAGACATGATCATAGGAT 58.301 40.000 8.15 0.00 29.85 3.24
2934 3025 2.414994 ATGAGCACATTAGCTGCACT 57.585 45.000 1.02 0.00 46.75 4.40
2984 3075 1.546029 GCAAACTGGGGGAAGACATTC 59.454 52.381 0.00 0.00 34.46 2.67
2985 3076 1.133199 TGCAAACTGGGGGAAGACATT 60.133 47.619 0.00 0.00 0.00 2.71
2986 3077 0.482446 TGCAAACTGGGGGAAGACAT 59.518 50.000 0.00 0.00 0.00 3.06
2987 3078 0.482446 ATGCAAACTGGGGGAAGACA 59.518 50.000 0.00 0.00 0.00 3.41
2988 3079 1.632589 AATGCAAACTGGGGGAAGAC 58.367 50.000 0.00 0.00 0.00 3.01
2989 3080 1.969923 CAAATGCAAACTGGGGGAAGA 59.030 47.619 0.00 0.00 0.00 2.87
2990 3081 1.608801 GCAAATGCAAACTGGGGGAAG 60.609 52.381 0.00 0.00 41.59 3.46
2991 3082 0.396060 GCAAATGCAAACTGGGGGAA 59.604 50.000 0.00 0.00 41.59 3.97
3015 3106 7.766219 ACTCCGTGTTACATATACATGAAAC 57.234 36.000 0.00 0.00 35.08 2.78
3032 3123 3.053831 ACCAAAGGAACATACTCCGTG 57.946 47.619 0.00 0.00 40.75 4.94
3033 3124 4.895668 TTACCAAAGGAACATACTCCGT 57.104 40.909 0.00 0.00 40.75 4.69
3034 3125 7.214381 TCATATTACCAAAGGAACATACTCCG 58.786 38.462 0.00 0.00 40.75 4.63
3035 3126 9.003658 CATCATATTACCAAAGGAACATACTCC 57.996 37.037 0.00 0.00 35.51 3.85
3036 3127 8.507249 GCATCATATTACCAAAGGAACATACTC 58.493 37.037 0.00 0.00 0.00 2.59
3037 3128 7.998383 TGCATCATATTACCAAAGGAACATACT 59.002 33.333 0.00 0.00 0.00 2.12
3038 3129 8.165239 TGCATCATATTACCAAAGGAACATAC 57.835 34.615 0.00 0.00 0.00 2.39
3048 3139 8.574251 AAACAAGTACTGCATCATATTACCAA 57.426 30.769 0.00 0.00 0.00 3.67
3063 3154 4.499696 GCATGCAAACCAGAAACAAGTACT 60.500 41.667 14.21 0.00 0.00 2.73
3085 3176 8.482429 CACAGTCATGAAAAAGATTAACTTTGC 58.518 33.333 0.00 0.00 46.55 3.68
3104 3195 4.937201 TCAGAAACTAAGAGCACAGTCA 57.063 40.909 0.00 0.00 0.00 3.41
3137 3228 4.518970 GGTTGGCTTGTGTTCAGATTTAGA 59.481 41.667 0.00 0.00 0.00 2.10
3278 3369 4.170062 CAGCTGTGGCGCCGATTG 62.170 66.667 23.90 12.92 44.37 2.67
3341 3432 9.482175 ACCTTAGCTTTATAGAAGAGAGAAGAA 57.518 33.333 0.00 0.00 0.00 2.52
3345 3436 8.798402 GCATACCTTAGCTTTATAGAAGAGAGA 58.202 37.037 0.00 0.00 0.00 3.10
3346 3437 8.032451 GGCATACCTTAGCTTTATAGAAGAGAG 58.968 40.741 0.00 0.00 0.00 3.20
3347 3438 7.897864 GGCATACCTTAGCTTTATAGAAGAGA 58.102 38.462 0.00 0.00 0.00 3.10
3364 3455 0.909623 AGTACGCCAAAGGCATACCT 59.090 50.000 10.29 0.00 46.86 3.08
3365 3456 1.134491 AGAGTACGCCAAAGGCATACC 60.134 52.381 10.29 3.32 46.86 2.73
3370 3461 0.389426 TTCGAGAGTACGCCAAAGGC 60.389 55.000 0.00 0.00 46.75 4.35
3371 3462 2.074547 TTTCGAGAGTACGCCAAAGG 57.925 50.000 0.00 0.00 0.00 3.11
3390 3481 3.055167 AGCCTGCAAACCTCAAACTTTTT 60.055 39.130 0.00 0.00 0.00 1.94
3391 3482 2.501316 AGCCTGCAAACCTCAAACTTTT 59.499 40.909 0.00 0.00 0.00 2.27
3392 3483 2.110578 AGCCTGCAAACCTCAAACTTT 58.889 42.857 0.00 0.00 0.00 2.66
3393 3484 1.780503 AGCCTGCAAACCTCAAACTT 58.219 45.000 0.00 0.00 0.00 2.66
3444 3540 4.755411 TCACCGTGTTCATTCCTATCTTC 58.245 43.478 0.00 0.00 0.00 2.87
3462 3558 2.235891 CCAACACCTAAAACCCTCACC 58.764 52.381 0.00 0.00 0.00 4.02
3496 3592 7.362056 GCAAGAAAACTAATGATGTTCCTAGCA 60.362 37.037 0.00 0.00 0.00 3.49
3603 3708 6.101296 ACGGAGGGAGTAGGATTTATGAAAAT 59.899 38.462 0.00 0.00 38.03 1.82
3619 3724 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3626 3731 6.796705 AGTTAAGACACTTATTTTGGGACG 57.203 37.500 0.00 0.00 0.00 4.79
3645 3750 4.685169 ACGTGCGTACTAAAGCTAGTTA 57.315 40.909 1.24 0.00 39.23 2.24
3661 3773 6.033302 GTGTCTTAACTAGCTTTAGTACGTGC 59.967 42.308 0.00 0.00 0.00 5.34
3662 3774 7.303998 AGTGTCTTAACTAGCTTTAGTACGTG 58.696 38.462 0.00 0.00 0.00 4.49
3670 3782 8.793592 CCCAAAATAAGTGTCTTAACTAGCTTT 58.206 33.333 0.00 0.00 0.00 3.51
3671 3783 8.161425 TCCCAAAATAAGTGTCTTAACTAGCTT 58.839 33.333 0.00 0.00 0.00 3.74
3673 3785 7.412672 CGTCCCAAAATAAGTGTCTTAACTAGC 60.413 40.741 0.00 0.00 0.00 3.42
3674 3786 7.064253 CCGTCCCAAAATAAGTGTCTTAACTAG 59.936 40.741 0.00 0.00 0.00 2.57
3675 3787 6.875195 CCGTCCCAAAATAAGTGTCTTAACTA 59.125 38.462 0.00 0.00 0.00 2.24
3676 3788 5.704053 CCGTCCCAAAATAAGTGTCTTAACT 59.296 40.000 0.00 0.00 0.00 2.24
3677 3789 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
3678 3790 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
3679 3791 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
3725 3837 3.689161 CGGCTATTTTGTTGGACATCAGA 59.311 43.478 0.00 0.00 0.00 3.27
3744 3856 1.219646 TCCACGACAAACTTAACGGC 58.780 50.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.