>input_sequence_42994
--------------------------------------------------------------------------------
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--------------------------------------------------------ATGGGCCCGCCGCCGCGCGACGTG
GTGGTGATCAGCTCCGACGAGGACGAGGGCTCCCGGAGGTCGTCTGTCTCGCCCGGCTCCCTCGGACGGGTCGCGTTGCT
CGGGGAATCGCTGCCGCCGGTGCCAGTGCCGCGGAGGAAGAAGGGCAAGTCCCGCGGCGTTCGCGCCAGAAAGGACAACG
ACGACGAGGAGGAGGACGACGACTGCGTGATCCTGGACGGCGACCCTGACGGGCCGGCTGTGGTTGTGGGCGCCAAGGGG
AGGGGCGCGGGGGACGGCGCGTCAGACGAGGTGGAGATCGTCGCGGTCAAAGGCAAGGTACAGATTGGTTTGTTCCCTTC
CGCTTTGATCCGCGCAATTTTTGCGCATTTCACTGAAGCAGTGCGAAACCTTGTTACGCTGCCTGGAGTCCGTGCCTAGA
GATGAGCAGACCACTGATTTCATCAGAAATTTCGTTTCGAATCGAACTGTGGCTCAGCGAGCATATGTTCTAATT-----
---------------------------------------TAAGTATGTATTGCACGTTCACTGCTTCAGAACATACTTTT
CCCGAAAGACTTTCATTGTTCAGCCTGTAACATGGAGGTGGTCTGCTGAAGTATCTGTCCCTGTTATTCACCCTTACTGT
CGATGAGCATCTTCAGTTTTACTGCATTTTGCCTGTGGACTGTGTTGGCATTCTAAATCGCAGCTACTACAACATGCCAT
CCTTCTGCAGATAGCGTGCAAGGATTTCCCTCACCCGCGGCATTTATGTTCTGAATTGCCCTTTAGCACCACTCCTCACC
CAAAGCATTGTAAAATGGTAAGTCACAAGCATTGTCACCCCCTGTCCCTGATTCTGTTGGTAATATGATTACAGTAGCAG
AGTTGACAGCATAGCTTTTGTAATGCGGCCCCGTTGCTGTTCTTTTTCTTTTCAAATGCAGTGCTACTGTTATGTGTGTG
ATGCTCCAGCTCCATGCAAGAGTTGGGGCAAAGGGCTCTTGAATGGTGATCATTGTCATGCCACCGACAAGGACACAAAG
TGGGAAACACTGAGGCAATCATTCAAGCGCAACTTTGAGCTGGGCAAGGAGGCCACTGTGTCCGCTGGGAACCTACCCTA
TGGCTTTGACACCGAGCGCCTTCGCCAGCTCTTCAGGTATGCCCGAACTCTCACGTTCTCATAGGTGAGCCTTCTTAGTT
CTCACAGGCGTTTGGATTGATC-GTTATACTCATCAATTGTTGAGCATGCAGTTGTAACTTCTTGATAAACCCTGAAATA
ATTTAAATATGTTTCTTATCAAGACTGATTGCATTGCTTCCTGGCCTTATCTAGTAGGCTATTCATGCAGTGCGCGGTTC
TGTTTCGTCGGTGTTCCTTTGTATGGGTTTTCTCTATGTGCTAAAACACAGTGTCTTACTTTGCTGATGTGCAGATCATT
TACGACAAGGGAACAGGCAAGAGTTGTGGACAGGGGAACTGGTTTTGACATCGATCGCCTTGGCCAGCTCTTCAGGTACG
CCCGAACTCTCACGT-----------------------TCTCATAGGTGAGCCTTCTTAGTTCTAACAGGTGGCTGGATT
GATCGTTATACTCATTAATTGTTGAGCATGCAGTTGTAACTTCTTGATAAACCCTGAAATAATTTAAATATGTTTGTTAT
CAAGACTGGTTGTATTGCTTCCTCGCCTTATCTAGGCTATTCATGCAGTGCGCAGTTCTGTTT-CATCGGTGCTCTTTGT
ATGGGTTTTCTCTATGCTCT-AAA-ACAGTGTCTACTTTGGTGATGTACAGATCATTTACGACAAGGGAACAGGCAAGAG
TTGTGGACAGGGAAACTGGCTGA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>chr5A_1_TraesCS5A01G280500
CACCATCTAACCCTAGATCTGGCACCCCCACCACGGCTAAGATGCCGAAGAAGGAAAGCATACCTGCTATCCATCAACCA
TGAATCCAACACATGTTCCGTCTTTCAGATGTCATCAGTGCAGACCATAATCTGCATTCGCTCCTGAACTACTTCCCAAG
CTCCACGCAGACGTTGGAGCAAACGCCGACGCAACGGCGGAGTCAAAGGTCACATGTGCACCAGAGGATGTCGCCGCTGC
CATGACATCCCAACTTGAACAGACTGGTTCTCAAATCCATCGCTAACCGTAGAGACGGTCGTCTCGCCAGAGAAGAATCT
GGAGCTTCTTTATTCAACATCGTTGTCGTCGTTGCTGAAGCCAAGACGTCGAACAATACAAAAACCTAAGCTACTAGGGC
TCTATAACTAAAA-CTTAAACGATCCGCACGCGCGGGATCCGGCGACCCCCT-CACCACCGACGACCAAGAGGTCACCGC
CGAAGGGGAGCCGCCAGAAGGGTTGGCTCTCTTGGCTTCGATGGCTAGGGTTGGCAGGCTATAATTAATCAGATCCATCC
TTTGATGAACGTATGTCATGTGGAGGTTTGTTCTTGGCTGTGTGTATTTTGAATGTCTTCAAATATCTTGTTGGTGTAGA
GGCTATGTGTATCTGGTATCCTCGCAATATTAATATATTCACCTTGTCAAAAAAAAG-TCGTGTGAAGGTCTGTCCACGT
GTATGCATCCTGTGGCGTACCATACGAAAATTCAAAATTTCGAGAACCAGAGCGGGCGGGCGAAAGCAGCCGCCCTCCCG
AGCTGCCAAA-GGGTGGGCCCCACATCGTC--CGCAGTCACACATCGGATACCGCGCTCGCGCCGCCTTCCTCCTCCAAT
CGCTCGGCGGCCACTTTCCCCGCCTCGCCGAGCCTGTTCGTCCGCTTCCCAGCTCGCCGCGCTCCCCTC----------C
CGGCGCTCAAACCCGAAGCCCACGGGCTGCCGTGGCGGCATCGCGCTCCTCGGCGGATGGGCCCGCCGCCGCGCGACGTG
GTGGTGATCAGCTCCGACGAGGACGAGGGCTCCCGGAGGTCGTCTGTCTCGCCCGGCTCCCTCGGACGGGTCGCGTTGCT
CGGGGAATCGCTGCCGCCGGTGCCAGTGCCGCGGAGGAAGAAGGGCAAGTCCCGCGGCGTTCGCGCCAGAAAGGACAACG
ACGACGAGGAGGAGGACGACGACTGCGTGATCCTGGACGGCGACCCTGACGGGCCGGCTGTGGTTGTGGGCGCCAAGGGG
AGGGGCGCGGGGGACGGCGCGTCAGACGAGGTGGAGATCGTCGCGGTCAAAGGCAAGGTACAGATTGGTTTGTTCCCTTC
CGCTTTGATCCGCGCAATTTTTGCGCATTTCACTGAAGCAGTGCGAAACCTTGTTACGCTGCCTGGAGTCCGTGCCTAGA
GATGAGCAGACCACTGATTTCATCAGAAATTTCGTTTCGAATCGAACTGTGGCTCAGCGAGCATATGTTCTAATT-----
---------------------------------------TAAGTATGTATTGCACGTTCACTGCTTCAGAACATACTTTT
CCCGAAAGACTTTCATTGTTCAGCCTGTAACATGGAGGTGGTCTGCTGAAGTATCTGTCCCTGTTATTCACCCTTACTGT
CGATGAGCATCTTCAGTTTTACTGCATTTTGCCTGTGGACTGTGTTGGCATTCTAAATCGCAGCTACTACAACATGCCAT
CCTTCTGCAGATAGCGTGCAAGGATTTCCCTCACCCGCGGCATTTATGTTCTGAATTGCCCTTTAGCACCACTCCTCACC
CAAAGCATTGTAAAATGGTAAGTCACAAGCATTGTCACCCCCTGTCCCTGATTCTGTTGGTAATATGATTACAGTAGCAG
AGTTGACAGCATAGCTTTTGTAATGCGGCCCCGTTGCTGTTCTTTTTCTTTTCAAATGCAGTGCTACTGTTATGTGTGTG
ATGCTCCAGCTCCATGCAAGAGTTGGGGCAAAGGGCTCTTGAATGGTGATCATTGTCATGCCACCGACAAGGACACAAAG
TGGGAAACACTGAGGCAATCATTCAAGCGCAACTTTGAGCTGGGCAAGGAGGCCACTGTGTCCGCTGGGAACCTACCCTA
TGGCTTTGACACCGAGCGCCTTCGCCAGCTCTTCAGGTATGCCCGAACTCTCACGTTCTCATAGGTGAGCCTTCTTAGTT
CTCACAGGCGTTTGGATTGATC-GTTATACTCATCAATTGTTGAGCATGCAGTTGTAACTTCTTGATAAACCCTGAAATA
ATTTAAATATGTTTCTTATCAAGACTGATTGCATTGCTTCCTGGCCTTATCTAGTAGGCTATTCATGCAGTGCGCGGTTC
TGTTTCGTCGGTGTTCCTTTGTATGGGTTTTCTCTATGTGCTAAAACACAGTGTCTTACTTTGCTGATGTGCAGATCATT
TACGACAAGGGAACAGGCAAGAGTTGTGGACAGGGGAACTGGTTTTGACATCGATCGCCTTGGCCAGCTCTTCAGGTACG
CCCGAACTCTCACGT-----------------------TCTCATAGGTGAGCCTTCTTAGTTCTAACAGGTGGCTGGATT
GATCGTTATACTCATTAATTGTTGAGCATGCAGTTGTAACTTCTTGATAAACCCTGAAATAATTTAAATATGTTTGTTAT
CAAGACTGGTTGTATTGCTTCCTCGCCTTATCTAGGCTATTCATGCAGTGCGCAGTTCTGTTT-CATCGGTGCTCTTTGT
ATGGGTTTTCTCTATGCTCT-AAA-ACAGTGTCTACTTTGGTGATGTACAGATCATTTACGACAAGGGAACAGGCAAGAG
TTGTGGACAGGGAAACTGGCTGAGTATGCTGTGCAGAATTTCCATCTGTGTGTGAGTATATTTCATAAATGATAACTTGA
TAT--GAC-AAATGTCCTTAATTAAGTTTAGAAGGGACTTGTTATCCTATGATCATGTCTTAGCAGTGCAGCTAATGTGC
TCATAGTTAAAGCACTATGGTTGCAGTATGGTTGGAATGTCTTCCCCCAGTTTGCATTTGCATACGTTTCATGTATATGT
AACACGGAGTATGTTCCTTTGGTAATATGATGCAGTACTTGTTTCTGGTTTGCATGCAAAGTTAATCTTTTTCATGACTG
TGCTCTTAGTTTCTGATTTAGGGAACATCTAAATCTGAACACAAGCCAACCTAATTGCCCTCGCCGTTCTTCTAATTTGT
TTATACTAGGGTGTTCCTTGACCTTTTAGCTGTTATTACTTCTTGAGGTCAGTATCATGTGCAATTTGTGCACCTCGGTT
TACCGAGACAATCGGCGCCACAGCTGTTCTGTCAGTTGCCAAGTATATGATGGCACGCTTTCTTGTAAATATTCTTCTCT
CTTCTATAAAGCTAAGGTATGCCTTTGGCGTACTCTCGAAAAAAAGTTTGAGGTTTGCAGGCTTGGAAGGGACGCAA---
--ACTGCGAGTTTGAGTTGGAAGATAGGAATGAACACGGTGAGGGTTTTAGGTGTTGGGTTTTGCAGGTTTTGCTA-GGA
ACATCATTAGTTTTCTTGCCATGCTTCTCTCTCTTTCTAATGTT---TACTACCTCCG--TAGCTGATAGTGTCATAATT
ATTTTACAGATTTATCATGA---TTTTATTTTCATAAATCCTACTCCCTCCGTCCCAAAATAAGTGTCTTA-------AC
TAGCTTTAGTACGCACGTACTAAAGCTAGTTAAGACACTTATTTTGGGACGGAGGGAGTATAAGTTTTCATCAACATCTG
ATGTCCAACAAAATAGCCGTTAAGTTTGTCGTGGAAACATCTCACGATCCTGTAAATGCTTACCATCTTTAGAGATTATA
TTTCAGG
>chr7D_3
--CCATCGAACTCCAGATCTGGCAT-CCCACCACGACTAAGATGCCGAAGGAGGAAATCATACCTGCCATCCATCAACCA
CTAACCCAGCACACATTCCGTCTTCCAGATGTTGTTGATGCAGACCACAATCTGCATTCGCTCCTGAACTACCTCCCAAG
CTCCACACCGACGCTGGAGCAGACGTCATCGCAACGGCAGAGCCCGAGGACACAAGTCCACCACAAGGTGTCGACACCAC
CACGACATCCCTGCTTGAACAGACTGGTTCCCAAATCCATCACCGACCATAGAGGCAATTGCCTCGCCGGAGAAGAATCC
GGAGCTTCTTTATTCAGCATCGTCGTCGCCGCTGCCGAAGCCAAGACGTCGAATGATCCAAAAACCTAAGCTATTAGGGC
CATAGAACATAAAGCTAAAATGATCCGCACGCGCGGGATCCGGCGACCCCCTTCACCACAGATGACCAAGAGGTCGTCGG
CGGAGGGGAGCCGCCGGAAGAGTTGGTTCTCTTGGC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>chr5B_654
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------GTATCCTCGTGATATTAATATATTCACCTTGTCAAAAAAAAGCTCGCGTGGAGGTCTGCCCACGT
GTAGGTATCCTGTGGCGTACCATTCGAAAATTCAAAATTTCGAGAACCAGAGCGGGCGGTCGAAAGCAGCCGCCC--CCG
AGCTGCCAAACTGGTGGGCCCCACATCGTCTGCGCAGTCAGCCATCGGATGCCGCGGTCGCGCCGCCTCCCTCCTCCAAT
CGTTGGCCGGCCACTTTCCCCGCCTCGCCCAGCCCGTTCATCCGCTACCCAGCTCGCCGCGCTCCCCTCTTCTCCCTTCC
CGGCGGTAAAAACGGAAACCCACGGGCCGCCGCAGCGGCATCGCGCTCCTCGGAGGATGGGCCCGCCGCCGCCCGACGTG
GTGGTGATCAGCTCCGACGAGGGCGAAGGCTCCCCGAGGCGGTCTGTCTCGCCCGGCTCCCTCGGGTGGGTCGCGTTGCT
CGGGGACTCGCCGCCGCCGCTGCCAGCGCCGCGGAGGAAGAAGGGCAAGTCCCGCGGCGTTCGCGCCAGAAAGGACAACG
ACGACGACGAC---GACGACGACTGCGTGATCCTGGACGGCGACCCTGACGGGCCGGCTGTGGTCGAGGGCGCCAAGGGG
AGGAGCGCGGGGGACGGCGCGTCAGACGAGGTGGAGATCGTCGCGGCCAAAGGCGAGGTACAGATTGGTCTGCTCCCTTC
CGTTTCGATCCACGCAATTTTTGTGCATTTCACTGAAGCAGTGCG-AACCTTGTTACGCTGCCTGGAGTCCGTGCATAGA
GATGATCAAGCCACTGATTTCATCAGAAATTTCGTTCTGAATCGAGCCGTAGCTCAGAGAGCATATGCTTTAATT-----
---------------------------------------TAA----GTGTTGCACGTTCACTGCTTCAGAACGTACTTTT
CCCGATAGACTTTCATTGTTCAGCCTGTAACATGGAAGTGGTCTGCTGAAGTATCTGTCCATGTTATCCATCCTTACTGT
CGATGAGCATCTTCAGTTTTACTGCAGTTTGCCTGTGGACTGTGTTGGCATTCTAAATTTCAGCTACTACA---TGGCAT
GCTTCTGCAGATAGCGTGCAAGGATTTCCCTCACCCGCGGCATTTATGTTCTGAATTGCCCTTTAGCACCACTCCTCACC
CAAAGCATTGTAAAATGGTAAGTCACAAGCATTGTCACCCCCTGTCCCTGATTCTGTTGGTAATACGATTACAATAGCAG
AGTTGACAACAGAGCTTTTGTAATGCGACCTCGTTGCTGTTCTTTTTTC---CAAATGCAGTGCTACTGTTATGTGTGTG
ATGCTCCAGCTCCATGCAAGCAATGGGGCAAAGGGCTCTTGAATGGTGGTCATTGTCATGCCACCGACAAGGAAACGAAG
TGGAAAATACTGAGGCAAGCATTCAAGTGCAACTTTGAGCCGGGCGAGGAGGCCACTGTGTCCGCTGGGAACCTACCCTA
TGGCTTTGACATCGAGCGCCTTCGCCAGCTCTTCAGGTACGCCCCAACTCTCACGTTCTCATAGGTGAGCCTTCTTAGTT
CTCACAGGCGGCTGGATTGATC-GTTATACTCATCAATTGTTGAGCATGCAGTTGTAACTTCTTGATAAACCCTGAAATA
ATGTAAATATGTTTCTTATCAAGACTGATTGCATTGCT-CCTCGCCTTATCTA---GGCTATTCATGCAGTGCGAGGTTC
TGTTTCGTCGGTGTTC-TTTGTATGGGTTTTCTCTATGTTCTAAAACATAGTGTCTTACTTCGCTGATGTGCAGATCATT
TACGACAAGGGAACAGGCAAGAGTTGTGGACAGGGGAACTGGTTTTGACATCGATCGCCTTGGCCAGCTCTTCAGGTACG
CCCAAACTCTCACGT-----------------------TCTCA-----------------------CAGGCGGCTGGATT
GATCGTTATACTCATTAGTTGTTTAGCATGCAGTTGTAACTCCTTGATAAACCTTGAAATAATTTAAATATTTTTCTTAT
CAAGACTGGTTGCATTGCTTCCTCGCCTTATCTAGGCTATTCATGCAGTGCGCGGTTCTGTTT-CGTCGGTGTTCTTTGT
ATGGATTCTCTCTATGTTCT-AAACACAGTGTCTACTTTGCTGATGTGCAGATCATTTACGACAAGGGAAGAGGCAAGAG
CTGTGGACGGGGAAACTGGCTGAGTATGCTGTGCAGAATTTCCATCTGCGTGTGAGTATATTTCGTAAATGATAACTTGA
TAT--GAAAAAATGTCCTTAATTAAATTTAGAAGGGACTTGTTCTCCTATGATCATGTCTTAGCTGTGCAGCTCATGTGC
TCATAGTTAAAGCACTATGGTTGGAATGTCA-----------TCCCCCAGTTTGCATTTGCATACCATTCACGTATATGT
AA-------TATGTTCCTATGGTAATATGATGCGGTACTTGTTTCTGGTTTGCATACAAAGTTAATCTTTTTCACGACTG
TGCTCTTAGTTTCTGATTTAGGGAACACCTAAATCGGAACACAAGCCAACCTAATTGCTCTCTTCGTCCTTCTAATTTGT
TT--ACTATGGTGTTCCTTGACCTTTTAGCTGTTATTACTTCTTGAGGTCAGTATTATGTGCAATTTGTGTACCTCGGTT
TACCAAGATAATCGGCGCCACAGCTGTTCTGTCGGTTGCCAAGTATATGATGGCACACTTTCATGTTTTG----------
--------------------------------------------AGTTTGAGGTTTGCAGGCTTGGAAGGGACGCAACGC
AAACTGCGAGTTTGAGTTGCAAGATAGGGATGAACACCGTGAGGGTTTTAGGTGTTGGGTTTTGCAGGTTTCGCTAGGGA
ACATCATTAGTTTTCTTGCCATGGCT-TCTCTCTTTCTAATC-T---TACTGCCTCCG--TAGCTGATAGTGTCAAAATT
ATTTTACAGATTTATCATGA---TTTT-TTTTCATAAATCCTATTCCCTCTGTCACAAAATAAGTGTCTCAACTTTGTAC
TAGCTATAGTACAAATTTGTACTAAGCTC--AAGACACTTATTTTGGGACGGAGGGAGTATAAGTTTTCATCAACAGCTG
ATGTCCAACAAAATAACCGTTAAGTTTGTCATGGAAACATCTCACGATCCTGTAAATGCTTACCATCTTTAGAGATTATA
TTTCAGG
>chr5D_695
--------------------------------------------------------------------------------
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--------------------------------------------------------G-TCGTGTGGAGGTCTGTCCACGT
GTACGTATCCTGTGGCGTACCCCCCGAAAATTCAAAATTTCGAGAACCGGAGCGGGCGGGCGAAAGCAGCCGCCC--CCG
AGCTGCCAAACGGGTGGGCCCCACATCGTCTGCGCAGTCACCCATCGGATGCCGCGGTCGCGCCGCCTCCCTCCTCCAAT
CGCTGGCCGGCCACTTTCCCCGCCTCGCCCAGCCTGTTCGTCCGCTTCCCAGCTCGCCGCGC----------TCCCCTCC
CGGCGGTCAAACCCGAAGCCCACGGGCCGCCTTGCCGGCATCGCGCTCCTCGGCGGATGGGGCCGCCGCCGGGCGACGTG
GTGGTGATCAGCTCCGACGAGGACGAGGGCTCCCCGAGGCGGTCTGTCTCGCCCGGCTCCCTCGGATGGGTCGCGTTGCG
CGGGGACTCGCCGCCGCCGGTGCCAGTGCCGCGGAGGAAGAAGGGCAAGTCCCGCGGCGTTCGCGCCAGAAAGGACAACG
ACGACA---AC---GACGACGACTGCGTGATCCTGGACGGCGACCCTGACGGGCCGGCTGTGGTTGCGTGCGCCAAGGGG
AGGGGCGCGGGGGACGGCGCGTCAGACGAGGTGGAGATCGTCGCGGTCAAAGGCAAGGTACAGATTGGTTTGCTCCCTTC
CGCTTCGATCCACGCAATTTTTGCGCATTTCACTGAAGCAGTGCG-AACCTTGTTACGCTG----GAGTCCGTGCCTAGA
GATGAGCAGACCACTGATTTCGTCGGAAATTTCATTTCGAATCGAACCGTGGCTCAGACTCGGAATCACAACCTTGGCTC
AGACTCAGAGAACATAGAGAAAACCCATACCAAGGAGTATAA----GTATTGCACGTTCACTGCTTCAGAATATAC-TTT
CCCGAAAGACTTTCACTGTTCAACCTGTAACATGGAGGTGGTCTGCTGAAGTATCTGTCCATGTTATTCATCCTTACTGT
CGATGAGCATCTTCAGTTTTACTGCAGTTTGCCTGTGGACTGTGTTGGCATTCTAAATCGCAGCTACTACA---TGCCAT
CCTTCTGCAGATAGCGTGCAAGGATTTCCCTCACCCGCGGCATTTATGTTCTGAATTGCCCTTTAGCACCACTCCTCACC
CAAAGCATTGTAAAATGGTAAGTCACAGGCATTGTCACCCCCTGTCCCTGATTCTGTTGGTAATATGATTACAGTAGCAG
AGTTGACAGCATAGCTTTTGTAATGCGGCCCCGTTGCTGTTCTTTTTCTTTTCAAATGCAGTGCTACTGTTATGTGTGTG
ATGCTCCAGCTCCATGCAAGCAATGGGGCAAAGGCCTCTTGAATGGTGGTCATTGTCATGCCACCGACAAGGACACAAAG
TGGGTAACACTGAGGCAATCATTCAAGCGCAACTTTGAGCCGGGCGAGGAGGCCACTGTGTCCGCTGGGAACCTACCCTA
TGGCTTTGACACCGAGCGCCTTCGCCAGTTCTTCAGGTACTCCTGAACTCTCACGTTCTCATAGGTGAGCCTTCTTAGTT
CTCACAGGTGGCTGGATTGATTGGTTATACGCATTACTTGTTGAGCATGCAGTTGTAACTTCTTGATAAACCCTGAAATA
ATGTAAATATGTTTCTTATCAAGACTGATTGCATTGCTTCCTCGCCTTATCTAGGT---TATTCATGCAGTGCGTGGTTC
TGTTTCGTCGGTGTTC-TTTGTATGGTTTTTCTCTATGTTCTAAAACACAGTGTCTTACTTTGCTGATGTTCAGATCATT
TACAACAAGGGAACAGGCAAGAGTTGTGGACAGGGGAACTGGTTTTGACATCGAGCGCCTTGGCCAGCTCTTCAGGTACG
CCCAAACTCTCACGTTCTCATAGGCGAACCTTCTTAGTTCTCA-----------------------CAGGCGGCTGGATT
GATCGTTATACTCATTAATTGTTGAGCATGCAGTTTTAAGTTCTTGTTAAACCCTGAAATAATTTAAATATGTTTCTTAT
CAAGACTGATTGTATTGCTTCCTCGCCTTATCTAGGCTATTCTTGCAGTGCGCGGTTCTGTTTCCGTCGGTGTTCTTTGT
ATGGGTTTTCTCTATGTTCTAAAACACAGTGTCTACTTTGCTGATGTGCAGATCATTTACAACACGGGAACAGGCAAGAG
TTGTGGACAGGGAAACTGGCTGAGTATGTTGTGCAGAATTTCCATCTGCGTGTGAGTATGTTTCATAAATGATAACTTGA
TATATGAC-AAATGTCCTTAATTAAATTTAGAAGGGACTTGTTCTCCTATGATCATGTCTTAGCTGTGCAGCTCATGTGC
TCATAGTTAAAGCACTATGGTTGGAATGTCTG-----------CCCCCAGTTTGCATTTGCATACCTTTCATGTATATGT
AA-------TATGTTCCTATGGTAATATGATGCGGTACATGTTTCTGGTTTGCATACAAAGTTAATCTTTTTCACAACTG
TGCTCTTAGTTTCTGATTTAGGGAACACCTAAATCTGAACACAAGCCAACCTAATTGCCCTCTTCGTTCTTCTAATTTGT
TT--ACTAGGGTGTTCCTTGACCTTTTAGCTGTTATTACTTCTTGAGGTCAGTATTATGTGCAACTTGTGTACCTCGGTT
TACCGAGATAATCGGCGCCACAGCTGTTCTGTCGGTTGCCAAGTATATGATGGCACACTTTCATGTTTTG----------
--------------------------------------------AGTTTGAGGTTTGCAGGCTTGGAAGGGACGCAA---
-AACTGCGAGTTTGAGTCCCAAGATAGGAATGAACACTGAGAGGGTTTTAGGTGTTGGGTTTTGCAGGTTTCGCTAGG-A
ACATCATTAGTTTTCTTGCCATGCTTCTCTCTCTTTCTAATGTTACTTACTACCTCCGTATAGCTGATAATGCCATAACT
ATTTTACAGACTTATCATGTTTCTTTT-TCTTCATAAATCC---------------------------------------
----------------------------------------------------------TATAAGTTTTCATCAACAGCTG
ATGTCCAACAAAATAACCATTTAGTTTGTCATGGAAGCATCTCATGATCCTGTAAATGCTTACCATCTTTAGAGATTATA
TTTCAGG
>SNPs
SS-----S---S-S----------SS---------S--------------S------S---------S------------
SS--S---S----SS---------S-------SS-SSS---------S------------------------S-------
------S-S----S-------S---S-SS---------S---S-SS---S----S--S-----S-S-S-----S-S-SS-
--S--------SS-----------------S----------S-SS---S-----S-SS-S-S------S----------S
----------------S------S----S--S---S-----------------SS--S---------------S------
SS--S---SS------S---S--------------------------------------S--S------------SS--S
--S------------S----S-----S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---------SS---------------------------------------S--------------
---S-S-----------------S---------------------------------------------------SS---
-----------------------------------------S--------S-----S-----------S-----------
----S-S----------------------S--------------------------------------------------
-----S---------------------S----------------------------------------------------
----------------------------------S----SS-------------------------S-------------
------S----S--------------------------------------------------------------------
-------S--SSSS----------------------------------------------------S-------------
------------------------------------------------------------------------S-------
-----S-----S---------------------------------S----------------------------------
-----------------------------------------------S---------S---------S-S----------
------------------------------------------SSSS----------------------------------
------------------------------------------------------------S---------S---------
--------------------------S--------------------------------------------SSS------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------SSS-------------------------S-------------------------------
----------------------------------------S----S----------------------------------
---------------------------------------S----------------------------------------
----------SS--------------------------------------------------------------------
--S---------------------------------------S-----------SS------------------S-----
----------------S----------------------S----------------------------------------
--------------------------------------------------------------------------------
---S---------------------------------------SSSSSSSSSSSSSSSSSSSSSSS----S---------
---------------------------------------------------------------------------S----
-----------------------------------------------------S-----------S------S-------
----------------S-----------------------S------S--------------------------------
------------------------------------------------S-------------------------------
-------------------------S-----------------S--------------------S--------S------
-----------------------S-S-S-SSSSSSSSSSSSS-----------------------S--------------
--SSSSSSS---------S--------------S---------------------S------------------S-----
---------------------------S----------------------------------SS----------------
--SS---------------------------------------------------S--------------S---------
--------S------------------------S----------------------S-----S---SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------
-------------------S-----------------S---------------------------------S--------
--------------------------------------------------------------------------------
---------------------------S---------------S------S---S--------------S----------
-----S------SS-SS-SSSSS-SSSSSSS---------------------------------------------S---
---------------S--------------S-------------------------------------------------
-------
>forward_228
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GTCACATGTGCACCAGAGGA------------
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>reverse_1353
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTCCCTTC
CGCTTTGATCCG--------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_851
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------CCGCAGTCACACATCGGATA-----------------------------
--------------------------------------------------------------------------------
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>reverse_2626
--------------------------------------------------------------------------------
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-----------------------------------------------------------------ACAGGTGGCTGGATT
GATCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>forward_885
--------------------------------------------------------------------------------
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-----------------------------------------------------------------CCTTCCTCCTCCAAT
CGCTC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2786
--------------------------------------------------------------------------------
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-----------------------------------------------------------------ATCGGTGCTCTTTGT
ATGGGT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_2023
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---CTCCAGCTCCATGCAAGAGT---------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------
>reverse_3461
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------GCCTTTGGCGTACTCTCGAA----------------------------------------
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