Multiple sequence alignment - TraesCS5A01G277500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G277500 chr5A 100.000 3185 0 0 1 3185 487367259 487364075 0.000000e+00 5882.0
1 TraesCS5A01G277500 chr5B 88.922 2338 147 52 850 3138 462884162 462881888 0.000000e+00 2780.0
2 TraesCS5A01G277500 chr5D 89.899 2089 119 44 770 2818 385605543 385603507 0.000000e+00 2604.0
3 TraesCS5A01G277500 chr5D 81.148 732 100 18 2 727 385606768 385606069 1.290000e-153 553.0
4 TraesCS5A01G277500 chr5D 82.673 404 58 10 124 522 385606069 385605673 6.540000e-92 348.0
5 TraesCS5A01G277500 chr5D 90.535 243 13 5 2900 3138 385603486 385603250 2.390000e-81 313.0
6 TraesCS5A01G277500 chr5D 77.517 298 46 11 1 294 385606348 385606068 3.290000e-35 159.0
7 TraesCS5A01G277500 chr7D 77.536 276 54 4 1641 1912 228985954 228985683 3.290000e-35 159.0
8 TraesCS5A01G277500 chr7D 77.632 152 21 9 1634 1774 535658933 535658784 2.630000e-11 80.5
9 TraesCS5A01G277500 chr7B 80.465 215 36 3 1641 1852 199855835 199855624 3.290000e-35 159.0
10 TraesCS5A01G277500 chr7B 78.808 151 21 9 1634 1774 577372570 577372421 1.220000e-14 91.6
11 TraesCS5A01G277500 chr7A 80.465 215 36 3 1641 1852 240956805 240956594 3.290000e-35 159.0
12 TraesCS5A01G277500 chr7A 76.974 152 22 9 1634 1774 617949370 617949519 1.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G277500 chr5A 487364075 487367259 3184 True 5882.0 5882 100.0000 1 3185 1 chr5A.!!$R1 3184
1 TraesCS5A01G277500 chr5B 462881888 462884162 2274 True 2780.0 2780 88.9220 850 3138 1 chr5B.!!$R1 2288
2 TraesCS5A01G277500 chr5D 385603250 385606768 3518 True 795.4 2604 84.3544 1 3138 5 chr5D.!!$R1 3137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.031857 CCAGCGAATGTTTGTTGGCA 59.968 50.0 3.35 0.00 36.36 4.92 F
1204 1710 0.103208 CGGGTTCTTCATCGAGGAGG 59.897 60.0 2.38 2.38 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 2150 0.539438 AGCCCGTTCCTGCAAAATCA 60.539 50.0 0.0 0.0 0.0 2.57 R
2828 3371 0.038618 GGGGTAAAGCAAGCGGTTTG 60.039 55.0 0.0 0.0 42.6 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 9.017669 CATAGTTTTCTAGATGTACACGTAACC 57.982 37.037 0.00 0.00 35.72 2.85
54 55 5.990120 AGATGTACACGTAACCCTAAACT 57.010 39.130 0.00 0.00 0.00 2.66
79 80 1.460743 CGACGCACAATATAGCATGGG 59.539 52.381 0.00 0.00 0.00 4.00
82 83 1.198408 CGCACAATATAGCATGGGCAG 59.802 52.381 9.89 1.37 46.29 4.85
93 94 4.348863 AGCATGGGCAGATTAGTAGAAG 57.651 45.455 0.00 0.00 44.61 2.85
94 95 3.713764 AGCATGGGCAGATTAGTAGAAGT 59.286 43.478 0.00 0.00 44.61 3.01
95 96 4.061596 GCATGGGCAGATTAGTAGAAGTC 58.938 47.826 0.00 0.00 40.72 3.01
96 97 4.443457 GCATGGGCAGATTAGTAGAAGTCA 60.443 45.833 0.00 0.00 40.72 3.41
97 98 5.744300 GCATGGGCAGATTAGTAGAAGTCAT 60.744 44.000 0.00 0.00 40.72 3.06
98 99 5.957771 TGGGCAGATTAGTAGAAGTCATT 57.042 39.130 0.00 0.00 0.00 2.57
114 115 6.817140 AGAAGTCATTATTAACTCACGGAACC 59.183 38.462 0.00 0.00 0.00 3.62
133 134 4.667519 ACCATCCGTTGATCTAGGTTAC 57.332 45.455 0.00 0.00 0.00 2.50
139 140 4.954202 TCCGTTGATCTAGGTTACTGACAT 59.046 41.667 0.00 0.00 0.00 3.06
147 148 6.268825 TCTAGGTTACTGACATGTTCTCAC 57.731 41.667 0.00 0.00 0.00 3.51
153 154 2.700371 ACTGACATGTTCTCACACTCCA 59.300 45.455 0.00 0.00 35.03 3.86
170 171 0.031857 CCAGCGAATGTTTGTTGGCA 59.968 50.000 3.35 0.00 36.36 4.92
172 173 0.317770 AGCGAATGTTTGTTGGCACG 60.318 50.000 0.00 0.00 35.57 5.34
174 175 1.862008 GCGAATGTTTGTTGGCACGAA 60.862 47.619 0.00 0.00 33.65 3.85
176 177 2.467305 CGAATGTTTGTTGGCACGAAAG 59.533 45.455 0.00 0.00 0.00 2.62
185 186 3.129462 TGTTGGCACGAAAGTTTGAATCA 59.871 39.130 0.00 0.00 46.40 2.57
237 239 8.342634 CCAAATTAAAGTTGACGATACCATAGG 58.657 37.037 0.00 0.00 0.00 2.57
241 243 8.851541 TTAAAGTTGACGATACCATAGGTTTT 57.148 30.769 0.00 0.00 37.09 2.43
242 244 6.980051 AAGTTGACGATACCATAGGTTTTC 57.020 37.500 0.00 0.00 37.09 2.29
243 245 5.107133 AGTTGACGATACCATAGGTTTTCG 58.893 41.667 15.28 15.28 42.07 3.46
249 466 4.447724 CGATACCATAGGTTTTCGGATGTG 59.552 45.833 11.22 0.00 36.87 3.21
251 468 2.290641 ACCATAGGTTTTCGGATGTGCA 60.291 45.455 0.00 0.00 27.29 4.57
252 469 2.752354 CCATAGGTTTTCGGATGTGCAA 59.248 45.455 0.00 0.00 0.00 4.08
266 483 2.866351 TGTGCAAGTAACCCTAAACCC 58.134 47.619 0.00 0.00 0.00 4.11
268 485 3.651904 TGTGCAAGTAACCCTAAACCCTA 59.348 43.478 0.00 0.00 0.00 3.53
275 492 2.259014 ACCCTAAACCCTACCGACAT 57.741 50.000 0.00 0.00 0.00 3.06
276 493 1.835531 ACCCTAAACCCTACCGACATG 59.164 52.381 0.00 0.00 0.00 3.21
277 494 1.474498 CCCTAAACCCTACCGACATGC 60.474 57.143 0.00 0.00 0.00 4.06
295 512 6.020360 CGACATGCGATATAACATGGACATAG 60.020 42.308 17.36 3.65 46.35 2.23
310 527 8.548877 ACATGGACATAGTAGTAAAAGGTCATT 58.451 33.333 0.00 0.00 0.00 2.57
337 554 2.667473 AACTAACGGAACATCCCTCG 57.333 50.000 0.00 0.00 31.13 4.63
349 566 4.383931 ACATCCCTCGCTCTAGGTTATA 57.616 45.455 0.00 0.00 34.56 0.98
365 738 6.859112 AGGTTATAGACATGTTCTCACACT 57.141 37.500 0.00 0.00 35.03 3.55
381 754 2.668457 CACACTCTAGCGGATGTTTGTC 59.332 50.000 0.00 0.00 0.00 3.18
384 757 0.459585 TCTAGCGGATGTTTGTCGGC 60.460 55.000 0.00 0.00 42.67 5.54
385 758 0.739462 CTAGCGGATGTTTGTCGGCA 60.739 55.000 8.73 0.00 44.18 5.69
387 760 1.226379 GCGGATGTTTGTCGGCATG 60.226 57.895 0.00 0.00 42.14 4.06
388 761 1.429021 CGGATGTTTGTCGGCATGG 59.571 57.895 0.00 0.00 0.00 3.66
390 763 1.666209 GGATGTTTGTCGGCATGGGG 61.666 60.000 0.00 0.00 0.00 4.96
391 764 0.679640 GATGTTTGTCGGCATGGGGA 60.680 55.000 0.00 0.00 0.00 4.81
394 767 0.455815 GTTTGTCGGCATGGGGATTC 59.544 55.000 0.00 0.00 0.00 2.52
404 777 2.560504 CATGGGGATTCGAATCGTTCA 58.439 47.619 27.21 23.55 36.27 3.18
408 781 2.866762 GGGGATTCGAATCGTTCAAGAG 59.133 50.000 27.21 0.00 36.27 2.85
414 787 4.252971 TCGAATCGTTCAAGAGGTTTCT 57.747 40.909 1.52 0.00 34.29 2.52
430 803 7.936584 AGAGGTTTCTTGAGAGAGATAATACG 58.063 38.462 0.00 0.00 32.44 3.06
450 823 4.719040 ACGAAATTAAAGTTGATGACGCC 58.281 39.130 0.00 0.00 0.00 5.68
452 825 5.150683 CGAAATTAAAGTTGATGACGCCAA 58.849 37.500 0.00 0.00 0.00 4.52
458 831 3.626028 AGTTGATGACGCCAAAGTTTC 57.374 42.857 0.00 0.00 0.00 2.78
459 832 2.293399 AGTTGATGACGCCAAAGTTTCC 59.707 45.455 0.00 0.00 0.00 3.13
460 833 2.270352 TGATGACGCCAAAGTTTCCT 57.730 45.000 0.00 0.00 0.00 3.36
461 834 2.151202 TGATGACGCCAAAGTTTCCTC 58.849 47.619 0.00 0.00 0.00 3.71
462 835 2.151202 GATGACGCCAAAGTTTCCTCA 58.849 47.619 0.00 0.00 0.00 3.86
474 847 6.148811 CCAAAGTTTCCTCAACGTACACATAT 59.851 38.462 0.00 0.00 40.75 1.78
475 848 6.721571 AAGTTTCCTCAACGTACACATATG 57.278 37.500 0.00 0.00 40.75 1.78
487 860 5.306160 ACGTACACATATGCCTAAACCCTAT 59.694 40.000 1.58 0.00 0.00 2.57
496 869 2.606272 GCCTAAACCCTATCGACAAACG 59.394 50.000 0.00 0.00 44.09 3.60
511 884 6.100668 TCGACAAACGATATAACATGGACAA 58.899 36.000 0.00 0.00 46.45 3.18
539 912 7.016153 AGTACAAAGTCATGATTAACTCCCA 57.984 36.000 0.00 0.00 0.00 4.37
543 916 7.433680 ACAAAGTCATGATTAACTCCCAAAAC 58.566 34.615 0.00 0.00 0.00 2.43
546 919 5.476945 AGTCATGATTAACTCCCAAAACCAC 59.523 40.000 0.00 0.00 0.00 4.16
550 923 0.483770 TAACTCCCAAAACCACCCCC 59.516 55.000 0.00 0.00 0.00 5.40
556 929 1.971695 CAAAACCACCCCCTCGCTC 60.972 63.158 0.00 0.00 0.00 5.03
575 948 4.497507 CGCTCTAGGTTATCGACATGTTCA 60.498 45.833 0.00 0.00 0.00 3.18
576 949 5.348986 GCTCTAGGTTATCGACATGTTCAA 58.651 41.667 0.00 0.00 0.00 2.69
577 950 5.810587 GCTCTAGGTTATCGACATGTTCAAA 59.189 40.000 0.00 0.00 0.00 2.69
581 954 5.305585 AGGTTATCGACATGTTCAAACACT 58.694 37.500 0.00 0.85 42.51 3.55
583 956 5.390567 GGTTATCGACATGTTCAAACACTCC 60.391 44.000 0.00 0.00 42.51 3.85
587 960 3.617669 GACATGTTCAAACACTCCAACG 58.382 45.455 0.00 0.00 42.51 4.10
589 962 2.116827 TGTTCAAACACTCCAACGGT 57.883 45.000 0.00 0.00 33.17 4.83
604 977 0.109039 ACGGTTGTTTGTTGGTGTGC 60.109 50.000 0.00 0.00 0.00 4.57
606 979 1.670087 CGGTTGTTTGTTGGTGTGCAA 60.670 47.619 0.00 0.00 0.00 4.08
610 983 3.393089 TGTTTGTTGGTGTGCAAGTTT 57.607 38.095 0.00 0.00 0.00 2.66
611 984 3.062763 TGTTTGTTGGTGTGCAAGTTTG 58.937 40.909 0.00 0.00 0.00 2.93
614 987 3.883830 TGTTGGTGTGCAAGTTTGAAT 57.116 38.095 0.00 0.00 0.00 2.57
620 994 2.713976 GTGTGCAAGTTTGAATCGTTCG 59.286 45.455 0.00 0.00 0.00 3.95
643 1017 5.588648 CGAGAGGTTTCTTGAGAGAGATACT 59.411 44.000 0.00 0.00 37.04 2.12
650 1024 8.261522 GGTTTCTTGAGAGAGATACTACCAAAT 58.738 37.037 0.00 0.00 32.44 2.32
651 1025 9.092876 GTTTCTTGAGAGAGATACTACCAAATG 57.907 37.037 0.00 0.00 32.44 2.32
660 1034 9.606631 GAGAGATACTACCAAATGAAAGTTGAT 57.393 33.333 0.00 0.00 46.37 2.57
674 1048 6.329496 TGAAAGTTGATGACACCAAAGTTTC 58.671 36.000 10.07 10.07 33.62 2.78
675 1049 4.918810 AGTTGATGACACCAAAGTTTCC 57.081 40.909 0.00 0.00 0.00 3.13
679 1053 0.547075 TGACACCAAAGTTTCCCCGA 59.453 50.000 0.00 0.00 0.00 5.14
683 1057 0.758123 ACCAAAGTTTCCCCGACGTA 59.242 50.000 0.00 0.00 0.00 3.57
704 1078 0.178894 ACGTACCCCTAAACCCCACT 60.179 55.000 0.00 0.00 0.00 4.00
716 1090 1.668826 ACCCCACTGACACACCATAT 58.331 50.000 0.00 0.00 0.00 1.78
718 1092 2.771943 ACCCCACTGACACACCATATAG 59.228 50.000 0.00 0.00 0.00 1.31
721 1095 3.370421 CCCACTGACACACCATATAGCAA 60.370 47.826 0.00 0.00 0.00 3.91
724 1098 3.118261 ACTGACACACCATATAGCAAGGG 60.118 47.826 0.00 0.00 0.00 3.95
733 1107 4.524328 ACCATATAGCAAGGGCAAATTAGC 59.476 41.667 0.00 0.00 44.61 3.09
740 1114 2.299867 CAAGGGCAAATTAGCACAAGGT 59.700 45.455 0.00 0.00 41.46 3.50
741 1115 2.171003 AGGGCAAATTAGCACAAGGTC 58.829 47.619 0.00 0.00 41.46 3.85
742 1116 1.892474 GGGCAAATTAGCACAAGGTCA 59.108 47.619 0.00 0.00 38.00 4.02
743 1117 2.497273 GGGCAAATTAGCACAAGGTCAT 59.503 45.455 0.00 0.00 38.00 3.06
744 1118 3.514645 GGCAAATTAGCACAAGGTCATG 58.485 45.455 0.00 0.00 35.83 3.07
745 1119 3.514645 GCAAATTAGCACAAGGTCATGG 58.485 45.455 0.00 0.00 0.00 3.66
746 1120 3.056607 GCAAATTAGCACAAGGTCATGGT 60.057 43.478 0.00 0.00 0.00 3.55
747 1121 4.561326 GCAAATTAGCACAAGGTCATGGTT 60.561 41.667 0.00 0.00 0.00 3.67
748 1122 5.336372 GCAAATTAGCACAAGGTCATGGTTA 60.336 40.000 0.00 0.00 0.00 2.85
749 1123 6.686630 CAAATTAGCACAAGGTCATGGTTAA 58.313 36.000 0.00 0.00 0.00 2.01
750 1124 5.897377 ATTAGCACAAGGTCATGGTTAAC 57.103 39.130 0.00 0.00 0.00 2.01
751 1125 2.514803 AGCACAAGGTCATGGTTAACC 58.485 47.619 18.27 18.27 35.69 2.85
752 1126 1.544246 GCACAAGGTCATGGTTAACCC 59.456 52.381 21.97 6.14 36.11 4.11
772 1146 2.240667 CCACAGAACCATCCCTGATTCT 59.759 50.000 0.00 0.00 34.65 2.40
819 1306 0.584396 GCGGATGTTTGTTCGACACA 59.416 50.000 0.00 0.00 0.00 3.72
899 1386 1.812571 GTAGAGTGGTGCATTGGGTTG 59.187 52.381 0.00 0.00 0.00 3.77
901 1388 0.314935 GAGTGGTGCATTGGGTTGTG 59.685 55.000 0.00 0.00 0.00 3.33
1024 1530 4.522114 CCATTTCTTCCTCTTTCCTCTCC 58.478 47.826 0.00 0.00 0.00 3.71
1062 1568 1.008079 GTTGCTGCTGAGTTGGTGC 60.008 57.895 0.00 0.00 0.00 5.01
1199 1705 1.153901 GCGACGGGTTCTTCATCGA 60.154 57.895 0.00 0.00 34.77 3.59
1200 1706 1.140407 GCGACGGGTTCTTCATCGAG 61.140 60.000 0.00 0.00 34.77 4.04
1201 1707 0.525668 CGACGGGTTCTTCATCGAGG 60.526 60.000 0.00 0.00 34.77 4.63
1202 1708 0.815734 GACGGGTTCTTCATCGAGGA 59.184 55.000 0.00 0.00 0.00 3.71
1203 1709 0.818296 ACGGGTTCTTCATCGAGGAG 59.182 55.000 0.00 0.00 0.00 3.69
1204 1710 0.103208 CGGGTTCTTCATCGAGGAGG 59.897 60.000 2.38 2.38 0.00 4.30
1205 1711 1.486211 GGGTTCTTCATCGAGGAGGA 58.514 55.000 7.89 7.89 0.00 3.71
1206 1712 1.410882 GGGTTCTTCATCGAGGAGGAG 59.589 57.143 11.77 2.25 0.00 3.69
1207 1713 1.410882 GGTTCTTCATCGAGGAGGAGG 59.589 57.143 11.77 0.00 0.00 4.30
1221 1727 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1242 1748 3.844090 GAGGCGGAGGAGGTGCTC 61.844 72.222 0.00 0.00 0.00 4.26
1293 1799 3.219928 TCGAGCTCCTCCATCGGC 61.220 66.667 8.47 0.00 37.08 5.54
1418 1924 2.082231 CTTGCCCATCAAGTGAGTCAG 58.918 52.381 0.00 0.00 45.48 3.51
1420 1926 1.002430 TGCCCATCAAGTGAGTCAGAC 59.998 52.381 0.00 0.00 0.00 3.51
1518 2025 0.941542 TTTGCAAAAGCGCGAGTAGT 59.058 45.000 12.10 0.00 33.35 2.73
1519 2026 1.785768 TTGCAAAAGCGCGAGTAGTA 58.214 45.000 12.10 0.00 33.35 1.82
1520 2027 1.346365 TGCAAAAGCGCGAGTAGTAG 58.654 50.000 12.10 0.00 33.35 2.57
1571 2085 2.611518 GAGTTGTCATCGGTTCCTCAG 58.388 52.381 0.00 0.00 0.00 3.35
1582 2096 2.489329 CGGTTCCTCAGTTGCAATTGAT 59.511 45.455 22.97 0.00 0.00 2.57
1590 2104 6.209986 TCCTCAGTTGCAATTGATTTTGATCT 59.790 34.615 22.97 0.00 0.00 2.75
1606 2122 4.098914 TGATCTAGAGAGGAAGAGGAGC 57.901 50.000 0.00 0.00 0.00 4.70
1630 2147 5.041951 TGGAAATTGATCCTTCGTTTTCG 57.958 39.130 0.00 0.00 41.43 3.46
1633 2150 5.432885 AAATTGATCCTTCGTTTTCGTGT 57.567 34.783 0.00 0.00 44.46 4.49
1677 2195 1.411493 GCTTCTACGCCGGAAAGTCG 61.411 60.000 5.05 0.00 0.00 4.18
1683 2201 1.372499 CGCCGGAAAGTCGAAGTCA 60.372 57.895 5.05 0.00 0.00 3.41
1941 2459 2.852075 AAGAACGGGTGGGAGGCA 60.852 61.111 0.00 0.00 0.00 4.75
2019 2537 3.612247 GAAGGGCGGCAGCTTCAGA 62.612 63.158 18.70 0.00 44.37 3.27
2028 2546 1.591059 CAGCTTCAGATCGCCGAGG 60.591 63.158 0.00 0.00 0.00 4.63
2031 2549 1.066587 CTTCAGATCGCCGAGGTCC 59.933 63.158 0.00 0.00 0.00 4.46
2034 2552 0.818445 TCAGATCGCCGAGGTCCTAC 60.818 60.000 0.00 0.00 0.00 3.18
2055 2573 3.380004 ACTCGCTCTCAGATCTTCGAAAT 59.620 43.478 0.00 0.00 0.00 2.17
2061 2579 0.305922 CAGATCTTCGAAATGGCGGC 59.694 55.000 0.00 0.00 0.00 6.53
2067 2585 4.943591 CGAAATGGCGGCGATGCG 62.944 66.667 12.98 1.59 35.06 4.73
2070 2588 4.529219 AATGGCGGCGATGCGAGA 62.529 61.111 12.98 0.00 35.06 4.04
2073 2591 3.106407 GGCGGCGATGCGAGATAC 61.106 66.667 12.98 0.00 35.06 2.24
2076 2594 1.846648 CGGCGATGCGAGATACAAC 59.153 57.895 0.00 0.00 0.00 3.32
2204 2723 7.327761 TGTGTAAGTGTCTAAGCTAAATTCGTC 59.672 37.037 0.00 0.00 0.00 4.20
2219 2738 2.251869 TCGTCGTGTTCTTGTATCCG 57.748 50.000 0.00 0.00 0.00 4.18
2249 2768 2.432628 CGTTGACCTCGCTCACCC 60.433 66.667 0.00 0.00 0.00 4.61
2250 2769 2.432628 GTTGACCTCGCTCACCCG 60.433 66.667 0.00 0.00 0.00 5.28
2251 2770 2.599281 TTGACCTCGCTCACCCGA 60.599 61.111 0.00 0.00 35.68 5.14
2252 2771 2.927580 TTGACCTCGCTCACCCGAC 61.928 63.158 0.00 0.00 33.12 4.79
2253 2772 4.131088 GACCTCGCTCACCCGACC 62.131 72.222 0.00 0.00 33.12 4.79
2286 2805 0.940126 CATGTATGAACTGCTCCGGC 59.060 55.000 0.00 0.00 39.26 6.13
2350 2869 4.819105 AACTAATGATGAACCGTCCTCA 57.181 40.909 0.00 0.00 33.58 3.86
2384 2906 4.402474 AGTTAGTTTAATGGCATTGCTCCC 59.598 41.667 22.57 10.89 0.00 4.30
2390 2912 2.595754 GGCATTGCTCCCGATCCC 60.596 66.667 8.82 0.00 0.00 3.85
2393 2915 0.753111 GCATTGCTCCCGATCCCTTT 60.753 55.000 0.16 0.00 0.00 3.11
2396 2918 0.322456 TTGCTCCCGATCCCTTTGTG 60.322 55.000 0.00 0.00 0.00 3.33
2397 2919 1.299976 GCTCCCGATCCCTTTGTGT 59.700 57.895 0.00 0.00 0.00 3.72
2398 2920 0.539986 GCTCCCGATCCCTTTGTGTA 59.460 55.000 0.00 0.00 0.00 2.90
2399 2921 1.742750 GCTCCCGATCCCTTTGTGTAC 60.743 57.143 0.00 0.00 0.00 2.90
2400 2922 1.553248 CTCCCGATCCCTTTGTGTACA 59.447 52.381 0.00 0.00 0.00 2.90
2402 2924 2.372504 TCCCGATCCCTTTGTGTACAAA 59.627 45.455 9.56 9.56 42.90 2.83
2403 2925 2.486592 CCCGATCCCTTTGTGTACAAAC 59.513 50.000 6.11 0.00 40.55 2.93
2450 2978 2.038952 TGATTTGCTGGATAGGGGATCG 59.961 50.000 0.00 0.00 35.12 3.69
2452 2980 0.764369 TTGCTGGATAGGGGATCGCT 60.764 55.000 9.90 0.00 35.12 4.93
2467 2995 2.890109 CGCTCTCCGCCATGATTGC 61.890 63.158 0.00 0.00 34.21 3.56
2473 3001 2.633657 CGCCATGATTGCGCTACC 59.366 61.111 9.73 0.00 46.01 3.18
2474 3002 2.179547 CGCCATGATTGCGCTACCA 61.180 57.895 9.73 0.00 46.01 3.25
2476 3004 2.024918 CCATGATTGCGCTACCACC 58.975 57.895 9.73 0.00 0.00 4.61
2477 3005 0.747644 CCATGATTGCGCTACCACCA 60.748 55.000 9.73 0.00 0.00 4.17
2478 3006 0.659427 CATGATTGCGCTACCACCAG 59.341 55.000 9.73 0.00 0.00 4.00
2479 3007 0.464373 ATGATTGCGCTACCACCAGG 60.464 55.000 9.73 0.00 42.21 4.45
2482 3010 3.899981 TTGCGCTACCACCAGGCAG 62.900 63.158 9.73 0.00 39.06 4.85
2498 3026 4.371417 AGGTCGGTAGGTCGCCCA 62.371 66.667 0.00 0.00 29.63 5.36
2500 3028 2.106332 GTCGGTAGGTCGCCCATG 59.894 66.667 0.00 0.00 0.00 3.66
2502 3030 2.106332 CGGTAGGTCGCCCATGAC 59.894 66.667 0.00 0.00 38.17 3.06
2511 3039 3.061848 GCCCATGACCGGTGGTTG 61.062 66.667 14.63 6.41 35.25 3.77
2512 3040 2.753701 CCCATGACCGGTGGTTGA 59.246 61.111 14.63 0.00 35.25 3.18
2515 3043 1.003355 CATGACCGGTGGTTGAGCT 60.003 57.895 14.63 0.00 35.25 4.09
2516 3044 0.249120 CATGACCGGTGGTTGAGCTA 59.751 55.000 14.63 0.00 35.25 3.32
2519 3047 1.078426 ACCGGTGGTTGAGCTATGC 60.078 57.895 6.12 0.00 27.29 3.14
2520 3048 1.819632 CCGGTGGTTGAGCTATGCC 60.820 63.158 0.00 0.00 0.00 4.40
2521 3049 1.221840 CGGTGGTTGAGCTATGCCT 59.778 57.895 0.00 0.00 0.00 4.75
2522 3050 0.811616 CGGTGGTTGAGCTATGCCTC 60.812 60.000 0.00 0.00 0.00 4.70
2524 3052 1.153369 TGGTTGAGCTATGCCTCGC 60.153 57.895 0.00 0.00 34.56 5.03
2525 3053 1.889573 GGTTGAGCTATGCCTCGCC 60.890 63.158 0.00 0.00 34.56 5.54
2526 3054 1.144936 GTTGAGCTATGCCTCGCCT 59.855 57.895 0.00 0.00 34.56 5.52
2527 3055 0.462759 GTTGAGCTATGCCTCGCCTT 60.463 55.000 0.00 0.00 34.56 4.35
2532 3066 1.524621 CTATGCCTCGCCTTGTGGG 60.525 63.158 0.00 0.00 38.36 4.61
2544 3080 2.689983 GCCTTGTGGGAGTATGAAATGG 59.310 50.000 0.00 0.00 37.23 3.16
2555 3091 5.452356 GGAGTATGAAATGGCTTGAAATGGG 60.452 44.000 0.00 0.00 0.00 4.00
2578 3114 2.028020 ACCAACGAGGAAGAATCAGACC 60.028 50.000 5.70 0.00 41.22 3.85
2579 3115 2.622436 CAACGAGGAAGAATCAGACCC 58.378 52.381 0.00 0.00 0.00 4.46
2581 3117 1.273324 ACGAGGAAGAATCAGACCCCT 60.273 52.381 0.00 0.00 0.00 4.79
2599 3137 4.166919 ACCCCTAATCAATCCCAAGAAGAG 59.833 45.833 0.00 0.00 0.00 2.85
2635 3174 2.779506 GCTTTTGCAGGTGGTAGTACT 58.220 47.619 0.00 0.00 46.58 2.73
2651 3194 3.740115 AGTACTGGTAACTTTGTGCCTG 58.260 45.455 0.00 0.00 37.61 4.85
2665 3208 4.547859 CCTGGAAAGGCAGATCCG 57.452 61.111 0.00 0.00 38.63 4.18
2666 3209 1.153086 CCTGGAAAGGCAGATCCGG 60.153 63.158 0.00 0.00 41.05 5.14
2668 3211 2.517166 GGAAAGGCAGATCCGGGC 60.517 66.667 0.00 0.00 40.77 6.13
2669 3212 2.272146 GAAAGGCAGATCCGGGCA 59.728 61.111 0.00 0.00 40.77 5.36
2671 3214 1.152881 AAAGGCAGATCCGGGCATC 60.153 57.895 0.00 0.00 40.77 3.91
2672 3215 2.631012 AAAGGCAGATCCGGGCATCC 62.631 60.000 0.00 0.00 40.77 3.51
2673 3216 3.877450 GGCAGATCCGGGCATCCA 61.877 66.667 0.00 0.00 0.00 3.41
2674 3217 2.433446 GCAGATCCGGGCATCCAT 59.567 61.111 0.00 0.00 0.00 3.41
2675 3218 1.228367 GCAGATCCGGGCATCCATT 60.228 57.895 0.00 0.00 0.00 3.16
2676 3219 0.825010 GCAGATCCGGGCATCCATTT 60.825 55.000 0.00 0.00 0.00 2.32
2677 3220 0.956633 CAGATCCGGGCATCCATTTG 59.043 55.000 0.00 0.00 0.00 2.32
2678 3221 0.825010 AGATCCGGGCATCCATTTGC 60.825 55.000 0.00 0.00 42.01 3.68
2739 3282 1.300697 ACCACGGCGACAGTTTCTC 60.301 57.895 16.62 0.00 0.00 2.87
2775 3318 0.388520 GAAAGTTGCGCCCCATGTTC 60.389 55.000 4.18 0.00 0.00 3.18
2809 3352 1.543871 GGCAAGAACAGGAACGGGTTA 60.544 52.381 0.00 0.00 31.50 2.85
2816 3359 0.602562 CAGGAACGGGTTACCACGTA 59.397 55.000 15.83 0.00 43.31 3.57
2817 3360 0.603065 AGGAACGGGTTACCACGTAC 59.397 55.000 15.83 12.52 43.31 3.67
2818 3361 0.316841 GGAACGGGTTACCACGTACA 59.683 55.000 15.83 0.00 43.31 2.90
2819 3362 1.066929 GGAACGGGTTACCACGTACAT 60.067 52.381 15.83 3.75 43.31 2.29
2820 3363 2.165437 GGAACGGGTTACCACGTACATA 59.835 50.000 15.83 0.00 43.31 2.29
2821 3364 3.367910 GGAACGGGTTACCACGTACATAA 60.368 47.826 15.83 0.00 43.31 1.90
2822 3365 3.951775 ACGGGTTACCACGTACATAAA 57.048 42.857 14.38 0.00 42.15 1.40
2823 3366 3.584834 ACGGGTTACCACGTACATAAAC 58.415 45.455 14.38 0.00 42.15 2.01
2824 3367 3.006323 ACGGGTTACCACGTACATAAACA 59.994 43.478 14.38 0.00 42.15 2.83
2825 3368 3.993081 CGGGTTACCACGTACATAAACAA 59.007 43.478 2.98 0.00 36.13 2.83
2826 3369 4.450419 CGGGTTACCACGTACATAAACAAA 59.550 41.667 2.98 0.00 36.13 2.83
2827 3370 5.049818 CGGGTTACCACGTACATAAACAAAA 60.050 40.000 2.98 0.00 36.13 2.44
2828 3371 6.142139 GGGTTACCACGTACATAAACAAAAC 58.858 40.000 2.98 0.00 36.50 2.43
2829 3372 6.238593 GGGTTACCACGTACATAAACAAAACA 60.239 38.462 2.98 0.00 36.50 2.83
2830 3373 7.192232 GGTTACCACGTACATAAACAAAACAA 58.808 34.615 0.00 0.00 0.00 2.83
2848 3401 0.178973 AAACCGCTTGCTTTACCCCT 60.179 50.000 0.00 0.00 0.00 4.79
2868 3421 1.438651 AACACGACGTGGATCCATTG 58.561 50.000 29.86 16.14 37.94 2.82
2873 3426 3.868661 CACGACGTGGATCCATTGATTAA 59.131 43.478 19.62 0.00 0.00 1.40
2876 3429 4.991056 CGACGTGGATCCATTGATTAATCT 59.009 41.667 19.62 0.00 0.00 2.40
2885 3438 3.243975 CCATTGATTAATCTGGGGCTTGC 60.244 47.826 16.24 0.00 0.00 4.01
2895 3448 3.435186 GGGCTTGCTCCGCTTGTC 61.435 66.667 0.00 0.00 0.00 3.18
2896 3449 2.359230 GGCTTGCTCCGCTTGTCT 60.359 61.111 0.00 0.00 0.00 3.41
2897 3450 1.079127 GGCTTGCTCCGCTTGTCTA 60.079 57.895 0.00 0.00 0.00 2.59
2898 3451 0.462759 GGCTTGCTCCGCTTGTCTAT 60.463 55.000 0.00 0.00 0.00 1.98
2921 3479 0.695347 CTCTTGGCCTGGGAGAAGTT 59.305 55.000 3.32 0.00 0.00 2.66
2937 3495 4.304939 AGAAGTTGGTGAAACGTAGTAGC 58.695 43.478 0.00 0.00 45.00 3.58
2938 3496 3.738830 AGTTGGTGAAACGTAGTAGCA 57.261 42.857 0.00 0.00 45.00 3.49
2939 3497 3.650139 AGTTGGTGAAACGTAGTAGCAG 58.350 45.455 0.00 0.00 45.00 4.24
2940 3498 3.069158 AGTTGGTGAAACGTAGTAGCAGT 59.931 43.478 0.00 0.00 45.00 4.40
2955 3513 9.738405 CGTAGTAGCAGTAGTAGTAATAAATCG 57.262 37.037 0.00 0.00 0.00 3.34
2993 3551 3.487202 CACGGCGACAATGTCCCG 61.487 66.667 28.69 28.69 45.11 5.14
3003 3561 0.173255 CAATGTCCCGTTTGGCATCC 59.827 55.000 0.00 0.00 32.03 3.51
3008 3566 2.485122 CCGTTTGGCATCCGAAGC 59.515 61.111 7.76 0.00 0.00 3.86
3087 3645 0.445436 GCTTGTCTTGTGATGGCTCG 59.555 55.000 0.00 0.00 0.00 5.03
3119 3681 5.897377 TTCTTTTCTCCGGGATTTTGATC 57.103 39.130 0.00 0.00 0.00 2.92
3124 3686 2.700897 TCTCCGGGATTTTGATCTCTCC 59.299 50.000 0.00 0.00 0.00 3.71
3138 3700 2.182030 CTCCCGGCGACAAGTCTC 59.818 66.667 9.30 0.00 0.00 3.36
3139 3701 3.685214 CTCCCGGCGACAAGTCTCG 62.685 68.421 9.30 2.84 36.70 4.04
3147 3709 2.949714 CGACAAGTCTCGCATTGTTT 57.050 45.000 0.00 0.00 39.66 2.83
3148 3710 2.563976 CGACAAGTCTCGCATTGTTTG 58.436 47.619 0.00 0.00 39.66 2.93
3149 3711 2.032894 CGACAAGTCTCGCATTGTTTGT 60.033 45.455 0.00 0.00 39.66 2.83
3150 3712 3.291585 GACAAGTCTCGCATTGTTTGTG 58.708 45.455 0.00 0.00 39.66 3.33
3151 3713 2.682856 ACAAGTCTCGCATTGTTTGTGT 59.317 40.909 0.00 0.00 36.23 3.72
3152 3714 3.242739 ACAAGTCTCGCATTGTTTGTGTC 60.243 43.478 0.00 0.00 36.23 3.67
3153 3715 2.560504 AGTCTCGCATTGTTTGTGTCA 58.439 42.857 0.00 0.00 37.14 3.58
3154 3716 2.287915 AGTCTCGCATTGTTTGTGTCAC 59.712 45.455 0.00 0.00 37.14 3.67
3155 3717 2.287915 GTCTCGCATTGTTTGTGTCACT 59.712 45.455 4.27 0.00 37.14 3.41
3156 3718 2.287644 TCTCGCATTGTTTGTGTCACTG 59.712 45.455 4.27 0.00 37.14 3.66
3157 3719 2.013400 TCGCATTGTTTGTGTCACTGT 58.987 42.857 4.27 0.00 37.14 3.55
3158 3720 2.110990 CGCATTGTTTGTGTCACTGTG 58.889 47.619 4.27 0.17 0.00 3.66
3159 3721 2.477694 CGCATTGTTTGTGTCACTGTGT 60.478 45.455 7.79 0.00 0.00 3.72
3160 3722 2.853594 GCATTGTTTGTGTCACTGTGTG 59.146 45.455 7.79 0.00 34.45 3.82
3161 3723 3.673052 GCATTGTTTGTGTCACTGTGTGT 60.673 43.478 7.79 0.00 34.79 3.72
3172 3734 0.250467 ACTGTGTGTGATGTGGAGGC 60.250 55.000 0.00 0.00 0.00 4.70
3173 3735 0.957395 CTGTGTGTGATGTGGAGGCC 60.957 60.000 0.00 0.00 0.00 5.19
3174 3736 1.376466 GTGTGTGATGTGGAGGCCT 59.624 57.895 3.86 3.86 0.00 5.19
3175 3737 0.613260 GTGTGTGATGTGGAGGCCTA 59.387 55.000 4.42 0.00 0.00 3.93
3176 3738 0.613260 TGTGTGATGTGGAGGCCTAC 59.387 55.000 8.55 8.55 0.00 3.18
3177 3739 0.460284 GTGTGATGTGGAGGCCTACG 60.460 60.000 11.35 0.00 0.00 3.51
3178 3740 1.521681 GTGATGTGGAGGCCTACGC 60.522 63.158 22.54 22.54 0.00 4.42
3179 3741 1.685765 TGATGTGGAGGCCTACGCT 60.686 57.895 28.61 14.59 34.44 5.07
3180 3742 1.227380 GATGTGGAGGCCTACGCTG 60.227 63.158 28.61 0.00 34.44 5.18
3181 3743 2.650813 GATGTGGAGGCCTACGCTGG 62.651 65.000 28.61 0.00 34.44 4.85
3182 3744 3.391382 GTGGAGGCCTACGCTGGT 61.391 66.667 22.05 0.00 34.44 4.00
3183 3745 2.056223 GTGGAGGCCTACGCTGGTA 61.056 63.158 22.05 0.00 34.44 3.25
3184 3746 2.056223 TGGAGGCCTACGCTGGTAC 61.056 63.158 11.35 0.00 34.44 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.268268 AGAAAACTATGACATCGTGAACTTTTA 57.732 29.630 0.00 0.00 0.00 1.52
18 19 7.823665 ACGTGTACATCTAGAAAACTATGACA 58.176 34.615 0.00 0.00 0.00 3.58
19 20 9.778993 TTACGTGTACATCTAGAAAACTATGAC 57.221 33.333 0.00 0.00 0.00 3.06
93 94 6.018180 GGATGGTTCCGTGAGTTAATAATGAC 60.018 42.308 0.00 0.00 30.72 3.06
94 95 6.053005 GGATGGTTCCGTGAGTTAATAATGA 58.947 40.000 0.00 0.00 30.72 2.57
95 96 6.300354 GGATGGTTCCGTGAGTTAATAATG 57.700 41.667 0.00 0.00 30.72 1.90
109 110 2.434702 ACCTAGATCAACGGATGGTTCC 59.565 50.000 0.00 0.00 36.49 3.62
114 115 5.163550 TGTCAGTAACCTAGATCAACGGATG 60.164 44.000 0.00 0.00 32.67 3.51
119 120 7.324178 AGAACATGTCAGTAACCTAGATCAAC 58.676 38.462 0.00 0.00 0.00 3.18
133 134 3.324117 CTGGAGTGTGAGAACATGTCAG 58.676 50.000 0.00 0.00 0.00 3.51
139 140 0.750249 TTCGCTGGAGTGTGAGAACA 59.250 50.000 0.00 0.00 0.00 3.18
147 148 2.605338 CCAACAAACATTCGCTGGAGTG 60.605 50.000 0.00 0.00 36.10 3.51
153 154 0.317770 CGTGCCAACAAACATTCGCT 60.318 50.000 0.00 0.00 0.00 4.93
170 171 5.696724 ACTCTCGAATGATTCAAACTTTCGT 59.303 36.000 15.75 0.00 41.84 3.85
172 173 8.286097 AGAAACTCTCGAATGATTCAAACTTTC 58.714 33.333 5.95 5.42 0.00 2.62
174 175 7.736447 AGAAACTCTCGAATGATTCAAACTT 57.264 32.000 5.95 0.00 0.00 2.66
176 177 7.576236 TCAAGAAACTCTCGAATGATTCAAAC 58.424 34.615 5.95 0.00 0.00 2.93
185 186 9.959749 GTATTATCTCTCAAGAAACTCTCGAAT 57.040 33.333 0.00 0.00 34.49 3.34
237 239 3.561503 GGTTACTTGCACATCCGAAAAC 58.438 45.455 0.00 0.00 0.00 2.43
241 243 0.981183 AGGGTTACTTGCACATCCGA 59.019 50.000 0.00 0.00 0.00 4.55
242 244 2.684001 TAGGGTTACTTGCACATCCG 57.316 50.000 0.00 0.00 0.00 4.18
243 245 3.442625 GGTTTAGGGTTACTTGCACATCC 59.557 47.826 0.00 0.00 0.00 3.51
249 466 3.614092 GGTAGGGTTTAGGGTTACTTGC 58.386 50.000 0.00 0.00 0.00 4.01
251 468 3.515502 GTCGGTAGGGTTTAGGGTTACTT 59.484 47.826 0.00 0.00 0.00 2.24
252 469 3.099905 GTCGGTAGGGTTTAGGGTTACT 58.900 50.000 0.00 0.00 0.00 2.24
266 483 4.562789 CCATGTTATATCGCATGTCGGTAG 59.437 45.833 14.47 0.00 40.42 3.18
268 485 3.006430 TCCATGTTATATCGCATGTCGGT 59.994 43.478 14.47 5.33 40.42 4.69
275 492 7.462571 ACTACTATGTCCATGTTATATCGCA 57.537 36.000 0.00 0.00 0.00 5.10
276 493 9.850628 TTTACTACTATGTCCATGTTATATCGC 57.149 33.333 0.00 0.00 0.00 4.58
310 527 9.768662 GAGGGATGTTCCGTTAGTTAATTAATA 57.231 33.333 0.31 0.00 37.43 0.98
311 528 7.440255 CGAGGGATGTTCCGTTAGTTAATTAAT 59.560 37.037 0.31 0.00 37.43 1.40
312 529 6.757947 CGAGGGATGTTCCGTTAGTTAATTAA 59.242 38.462 0.00 0.00 37.43 1.40
313 530 6.275335 CGAGGGATGTTCCGTTAGTTAATTA 58.725 40.000 0.00 0.00 37.43 1.40
314 531 5.114081 CGAGGGATGTTCCGTTAGTTAATT 58.886 41.667 0.00 0.00 37.43 1.40
324 541 0.312416 CTAGAGCGAGGGATGTTCCG 59.688 60.000 0.00 0.00 37.43 4.30
331 548 3.393609 TGTCTATAACCTAGAGCGAGGGA 59.606 47.826 7.21 0.00 41.36 4.20
337 554 7.142680 GTGAGAACATGTCTATAACCTAGAGC 58.857 42.308 0.00 0.00 36.41 4.09
349 566 3.119673 CGCTAGAGTGTGAGAACATGTCT 60.120 47.826 0.00 0.00 40.25 3.41
365 738 0.459585 GCCGACAAACATCCGCTAGA 60.460 55.000 0.00 0.00 0.00 2.43
381 754 1.568612 CGATTCGAATCCCCATGCCG 61.569 60.000 27.91 13.60 31.68 5.69
384 757 2.560504 TGAACGATTCGAATCCCCATG 58.439 47.619 27.91 17.66 31.68 3.66
385 758 3.118408 TCTTGAACGATTCGAATCCCCAT 60.118 43.478 27.91 14.14 31.68 4.00
387 760 2.866762 CTCTTGAACGATTCGAATCCCC 59.133 50.000 27.91 18.38 31.68 4.81
388 761 2.866762 CCTCTTGAACGATTCGAATCCC 59.133 50.000 27.91 18.68 31.68 3.85
390 763 5.348997 AGAAACCTCTTGAACGATTCGAATC 59.651 40.000 25.18 25.18 0.00 2.52
391 764 5.238583 AGAAACCTCTTGAACGATTCGAAT 58.761 37.500 11.20 11.20 0.00 3.34
394 767 4.992381 AAGAAACCTCTTGAACGATTCG 57.008 40.909 4.14 4.14 40.54 3.34
404 777 8.410141 CGTATTATCTCTCTCAAGAAACCTCTT 58.590 37.037 0.00 0.00 42.96 2.85
408 781 8.928270 TTTCGTATTATCTCTCTCAAGAAACC 57.072 34.615 0.00 0.00 0.00 3.27
430 803 6.640907 ACTTTGGCGTCATCAACTTTAATTTC 59.359 34.615 0.00 0.00 0.00 2.17
444 817 1.673920 GTTGAGGAAACTTTGGCGTCA 59.326 47.619 0.00 0.00 44.43 4.35
448 821 2.614983 TGTACGTTGAGGAAACTTTGGC 59.385 45.455 0.00 0.00 44.43 4.52
450 823 4.868450 TGTGTACGTTGAGGAAACTTTG 57.132 40.909 0.00 0.00 44.43 2.77
452 825 5.121768 GCATATGTGTACGTTGAGGAAACTT 59.878 40.000 4.29 0.00 44.43 2.66
458 831 3.179443 AGGCATATGTGTACGTTGAGG 57.821 47.619 4.29 0.00 0.00 3.86
459 832 5.006358 GGTTTAGGCATATGTGTACGTTGAG 59.994 44.000 4.29 0.00 0.00 3.02
460 833 4.871557 GGTTTAGGCATATGTGTACGTTGA 59.128 41.667 4.29 0.00 0.00 3.18
461 834 4.034742 GGGTTTAGGCATATGTGTACGTTG 59.965 45.833 4.29 0.00 0.00 4.10
462 835 4.080751 AGGGTTTAGGCATATGTGTACGTT 60.081 41.667 4.29 0.00 0.00 3.99
474 847 3.602483 GTTTGTCGATAGGGTTTAGGCA 58.398 45.455 0.00 0.00 0.00 4.75
475 848 2.606272 CGTTTGTCGATAGGGTTTAGGC 59.394 50.000 0.00 0.00 42.86 3.93
500 873 9.562408 TGACTTTGTACTAATTTGTCCATGTTA 57.438 29.630 0.00 0.00 0.00 2.41
519 892 6.868339 GGTTTTGGGAGTTAATCATGACTTTG 59.132 38.462 0.00 0.00 0.00 2.77
522 895 5.476945 GTGGTTTTGGGAGTTAATCATGACT 59.523 40.000 0.00 0.00 0.00 3.41
537 910 2.989253 GCGAGGGGGTGGTTTTGG 60.989 66.667 0.00 0.00 0.00 3.28
539 912 0.838987 TAGAGCGAGGGGGTGGTTTT 60.839 55.000 0.00 0.00 0.00 2.43
543 916 2.840102 CCTAGAGCGAGGGGGTGG 60.840 72.222 0.00 0.00 32.39 4.61
546 919 1.258676 GATAACCTAGAGCGAGGGGG 58.741 60.000 7.21 0.00 41.36 5.40
550 923 3.251245 ACATGTCGATAACCTAGAGCGAG 59.749 47.826 0.00 0.00 0.00 5.03
556 929 6.590292 AGTGTTTGAACATGTCGATAACCTAG 59.410 38.462 0.00 0.00 41.59 3.02
575 948 2.559231 ACAAACAACCGTTGGAGTGTTT 59.441 40.909 15.60 13.07 41.35 2.83
576 949 2.164338 ACAAACAACCGTTGGAGTGTT 58.836 42.857 15.60 3.44 36.56 3.32
577 950 1.828979 ACAAACAACCGTTGGAGTGT 58.171 45.000 15.60 12.20 34.86 3.55
583 956 1.989165 CACACCAACAAACAACCGTTG 59.011 47.619 9.80 9.80 41.73 4.10
587 960 1.999024 CTTGCACACCAACAAACAACC 59.001 47.619 0.00 0.00 0.00 3.77
589 962 3.393089 AACTTGCACACCAACAAACAA 57.607 38.095 0.00 0.00 0.00 2.83
600 973 2.609916 TCGAACGATTCAAACTTGCACA 59.390 40.909 0.00 0.00 0.00 4.57
601 974 3.059868 TCTCGAACGATTCAAACTTGCAC 60.060 43.478 0.00 0.00 0.00 4.57
604 977 3.741344 ACCTCTCGAACGATTCAAACTTG 59.259 43.478 0.00 0.00 0.00 3.16
606 979 3.662247 ACCTCTCGAACGATTCAAACT 57.338 42.857 0.00 0.00 0.00 2.66
610 983 3.936372 AGAAACCTCTCGAACGATTCA 57.064 42.857 9.15 0.00 0.00 2.57
611 984 4.235360 TCAAGAAACCTCTCGAACGATTC 58.765 43.478 0.00 0.00 0.00 2.52
614 987 2.882761 TCTCAAGAAACCTCTCGAACGA 59.117 45.455 0.00 0.00 0.00 3.85
620 994 7.012989 GGTAGTATCTCTCTCAAGAAACCTCTC 59.987 44.444 0.00 0.00 0.00 3.20
643 1017 5.830457 TGGTGTCATCAACTTTCATTTGGTA 59.170 36.000 0.00 0.00 31.63 3.25
650 1024 5.913137 AACTTTGGTGTCATCAACTTTCA 57.087 34.783 0.00 0.00 31.63 2.69
651 1025 5.748630 GGAAACTTTGGTGTCATCAACTTTC 59.251 40.000 14.63 14.63 31.50 2.62
660 1034 0.547075 TCGGGGAAACTTTGGTGTCA 59.453 50.000 0.00 0.00 31.50 3.58
683 1057 0.473501 TGGGGTTTAGGGGTACGTGT 60.474 55.000 0.00 0.00 0.00 4.49
704 1078 2.421388 GCCCTTGCTATATGGTGTGTCA 60.421 50.000 0.00 0.00 33.53 3.58
716 1090 2.801483 TGTGCTAATTTGCCCTTGCTA 58.199 42.857 9.41 0.00 38.71 3.49
718 1092 2.340337 CTTGTGCTAATTTGCCCTTGC 58.660 47.619 9.41 0.00 38.26 4.01
721 1095 2.171003 GACCTTGTGCTAATTTGCCCT 58.829 47.619 9.41 0.00 0.00 5.19
724 1098 3.056607 ACCATGACCTTGTGCTAATTTGC 60.057 43.478 4.83 4.83 0.00 3.68
733 1107 2.870175 TGGGTTAACCATGACCTTGTG 58.130 47.619 25.71 0.00 46.80 3.33
744 1118 2.443416 GGATGGTTCTGTGGGTTAACC 58.557 52.381 16.85 16.85 42.49 2.85
745 1119 2.041216 AGGGATGGTTCTGTGGGTTAAC 59.959 50.000 0.00 0.00 0.00 2.01
746 1120 2.041081 CAGGGATGGTTCTGTGGGTTAA 59.959 50.000 0.00 0.00 0.00 2.01
747 1121 1.633432 CAGGGATGGTTCTGTGGGTTA 59.367 52.381 0.00 0.00 0.00 2.85
748 1122 0.405585 CAGGGATGGTTCTGTGGGTT 59.594 55.000 0.00 0.00 0.00 4.11
749 1123 0.475632 TCAGGGATGGTTCTGTGGGT 60.476 55.000 0.00 0.00 33.13 4.51
750 1124 0.921896 ATCAGGGATGGTTCTGTGGG 59.078 55.000 0.00 0.00 33.13 4.61
751 1125 2.240667 AGAATCAGGGATGGTTCTGTGG 59.759 50.000 3.05 0.00 33.13 4.17
752 1126 3.641434 AGAATCAGGGATGGTTCTGTG 57.359 47.619 3.05 0.00 33.13 3.66
753 1127 3.713764 CCTAGAATCAGGGATGGTTCTGT 59.286 47.826 12.81 0.00 33.36 3.41
754 1128 3.713764 ACCTAGAATCAGGGATGGTTCTG 59.286 47.826 12.81 1.58 40.29 3.02
755 1129 4.014273 ACCTAGAATCAGGGATGGTTCT 57.986 45.455 8.66 8.66 40.29 3.01
756 1130 4.779993 AACCTAGAATCAGGGATGGTTC 57.220 45.455 0.00 0.00 40.29 3.62
759 1133 4.772624 TCGATAACCTAGAATCAGGGATGG 59.227 45.833 0.00 0.00 40.29 3.51
772 1146 4.096382 GTGTAAGAACCGGTCGATAACCTA 59.904 45.833 8.04 0.00 46.87 3.08
785 1272 0.524862 TCCGCTCGAGTGTAAGAACC 59.475 55.000 23.55 0.00 0.00 3.62
819 1306 5.187186 TGCCTCTAGAACTATTCGGACTTTT 59.813 40.000 0.00 0.00 34.02 2.27
899 1386 2.707529 GATCCTCTGCGGCCTAGCAC 62.708 65.000 0.00 0.00 42.92 4.40
901 1388 2.341911 GATCCTCTGCGGCCTAGC 59.658 66.667 0.00 0.00 37.71 3.42
1024 1530 5.708948 CAACTTGTGTAAGAGAGAGAGAGG 58.291 45.833 0.00 0.00 37.36 3.69
1199 1705 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1200 1706 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1201 1707 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1202 1708 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1203 1709 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1204 1710 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1205 1711 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1206 1712 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1207 1713 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1221 1727 4.467107 ACCTCCTCCGCCTCCTCC 62.467 72.222 0.00 0.00 0.00 4.30
1323 1829 4.444081 ACCTCCTCGTCCTCCCCG 62.444 72.222 0.00 0.00 0.00 5.73
1418 1924 3.492756 GGAAGCATATTCAGAGAAGCGTC 59.507 47.826 0.00 0.00 0.00 5.19
1420 1926 3.726607 AGGAAGCATATTCAGAGAAGCG 58.273 45.455 0.00 0.00 0.00 4.68
1551 2065 2.028930 ACTGAGGAACCGATGACAACTC 60.029 50.000 0.00 0.00 0.00 3.01
1556 2070 1.079503 GCAACTGAGGAACCGATGAC 58.920 55.000 0.00 0.00 0.00 3.06
1571 2085 7.914346 CCTCTCTAGATCAAAATCAATTGCAAC 59.086 37.037 0.00 0.00 34.07 4.17
1582 2096 5.362430 GCTCCTCTTCCTCTCTAGATCAAAA 59.638 44.000 0.00 0.00 0.00 2.44
1590 2104 2.515853 TCCATGCTCCTCTTCCTCTCTA 59.484 50.000 0.00 0.00 0.00 2.43
1606 2122 5.512788 CGAAAACGAAGGATCAATTTCCATG 59.487 40.000 0.00 0.00 38.32 3.66
1630 2147 1.335872 CCCGTTCCTGCAAAATCACAC 60.336 52.381 0.00 0.00 0.00 3.82
1633 2150 0.539438 AGCCCGTTCCTGCAAAATCA 60.539 50.000 0.00 0.00 0.00 2.57
1677 2195 1.363744 CGAGGCTGGTGAATGACTTC 58.636 55.000 0.00 0.00 0.00 3.01
1866 2384 2.042843 TCCTCCTCGCCTTCCTCC 60.043 66.667 0.00 0.00 0.00 4.30
1869 2387 2.754658 TCGTCCTCCTCGCCTTCC 60.755 66.667 0.00 0.00 0.00 3.46
1965 2483 1.021390 CCATCTGGGTGTTCACGCTC 61.021 60.000 17.97 0.44 0.00 5.03
2003 2521 3.397613 GATCTGAAGCTGCCGCCCT 62.398 63.158 0.00 0.00 36.60 5.19
2019 2537 4.160928 GAGTAGGACCTCGGCGAT 57.839 61.111 11.27 0.00 0.00 4.58
2028 2546 2.846193 AGATCTGAGAGCGAGTAGGAC 58.154 52.381 0.00 0.00 0.00 3.85
2031 2549 3.127589 TCGAAGATCTGAGAGCGAGTAG 58.872 50.000 0.00 0.00 0.00 2.57
2034 2552 3.412981 TTTCGAAGATCTGAGAGCGAG 57.587 47.619 0.00 0.00 35.04 5.03
2037 2555 2.543430 GCCATTTCGAAGATCTGAGAGC 59.457 50.000 0.00 0.00 35.04 4.09
2040 2558 1.863454 CCGCCATTTCGAAGATCTGAG 59.137 52.381 0.00 0.00 35.04 3.35
2055 2573 3.601685 TATCTCGCATCGCCGCCA 61.602 61.111 0.00 0.00 0.00 5.69
2061 2579 2.209838 ACTGGTTGTATCTCGCATCG 57.790 50.000 0.00 0.00 0.00 3.84
2067 2585 2.099263 TCGCAGCTACTGGTTGTATCTC 59.901 50.000 0.00 0.00 31.21 2.75
2070 2588 3.543680 ATTCGCAGCTACTGGTTGTAT 57.456 42.857 0.00 0.00 31.21 2.29
2073 2591 1.061131 CGAATTCGCAGCTACTGGTTG 59.939 52.381 15.93 0.00 31.21 3.77
2160 2678 3.125829 ACACATGCTCTTGCGATTACTTG 59.874 43.478 0.00 0.00 43.34 3.16
2204 2723 2.942710 ACTGACGGATACAAGAACACG 58.057 47.619 0.00 0.00 0.00 4.49
2219 2738 1.439679 GTCAACGGGATCCAACTGAC 58.560 55.000 15.23 17.10 0.00 3.51
2249 2768 1.585521 GTCTGCGTACATCGGGTCG 60.586 63.158 0.00 0.00 40.26 4.79
2250 2769 0.102481 ATGTCTGCGTACATCGGGTC 59.898 55.000 0.00 0.00 35.08 4.46
2251 2770 0.179111 CATGTCTGCGTACATCGGGT 60.179 55.000 1.00 0.00 38.01 5.28
2252 2771 0.179111 ACATGTCTGCGTACATCGGG 60.179 55.000 0.00 0.00 38.01 5.14
2253 2772 2.485266 TACATGTCTGCGTACATCGG 57.515 50.000 0.00 0.00 38.01 4.18
2254 2773 3.628017 TCATACATGTCTGCGTACATCG 58.372 45.455 0.00 1.45 38.01 3.84
2343 2862 9.804758 AAACTAACTAATCTTATCTTGAGGACG 57.195 33.333 0.00 0.00 0.00 4.79
2378 2900 1.299648 CACAAAGGGATCGGGAGCA 59.700 57.895 0.00 0.00 0.00 4.26
2384 2906 6.677781 ATATGTTTGTACACAAAGGGATCG 57.322 37.500 7.75 0.00 45.36 3.69
2423 2950 4.202284 CCCCTATCCAGCAAATCAAATTGG 60.202 45.833 0.00 0.00 0.00 3.16
2476 3004 2.893398 GACCTACCGACCTGCCTG 59.107 66.667 0.00 0.00 0.00 4.85
2477 3005 2.754658 CGACCTACCGACCTGCCT 60.755 66.667 0.00 0.00 0.00 4.75
2478 3006 4.509737 GCGACCTACCGACCTGCC 62.510 72.222 0.00 0.00 0.00 4.85
2479 3007 4.509737 GGCGACCTACCGACCTGC 62.510 72.222 0.00 0.00 0.00 4.85
2498 3026 1.134401 CATAGCTCAACCACCGGTCAT 60.134 52.381 2.59 0.00 33.12 3.06
2500 3028 1.090052 GCATAGCTCAACCACCGGTC 61.090 60.000 2.59 0.00 33.12 4.79
2502 3030 1.819632 GGCATAGCTCAACCACCGG 60.820 63.158 0.00 0.00 0.00 5.28
2504 3032 0.811616 CGAGGCATAGCTCAACCACC 60.812 60.000 0.00 0.00 0.00 4.61
2505 3033 1.432270 GCGAGGCATAGCTCAACCAC 61.432 60.000 0.00 0.00 0.00 4.16
2508 3036 0.462759 AAGGCGAGGCATAGCTCAAC 60.463 55.000 2.95 0.00 0.00 3.18
2511 3039 1.144936 ACAAGGCGAGGCATAGCTC 59.855 57.895 2.95 0.00 0.00 4.09
2512 3040 1.153289 CACAAGGCGAGGCATAGCT 60.153 57.895 2.95 0.00 0.00 3.32
2515 3043 1.971505 CTCCCACAAGGCGAGGCATA 61.972 60.000 0.00 0.00 34.51 3.14
2516 3044 3.329889 TCCCACAAGGCGAGGCAT 61.330 61.111 0.00 0.00 34.51 4.40
2519 3047 0.179073 CATACTCCCACAAGGCGAGG 60.179 60.000 0.00 0.00 36.86 4.63
2520 3048 0.824109 TCATACTCCCACAAGGCGAG 59.176 55.000 0.00 0.00 37.87 5.03
2521 3049 1.271856 TTCATACTCCCACAAGGCGA 58.728 50.000 0.00 0.00 34.51 5.54
2522 3050 2.107950 TTTCATACTCCCACAAGGCG 57.892 50.000 0.00 0.00 34.51 5.52
2524 3052 2.689983 GCCATTTCATACTCCCACAAGG 59.310 50.000 0.00 0.00 0.00 3.61
2525 3053 3.624777 AGCCATTTCATACTCCCACAAG 58.375 45.455 0.00 0.00 0.00 3.16
2526 3054 3.737559 AGCCATTTCATACTCCCACAA 57.262 42.857 0.00 0.00 0.00 3.33
2527 3055 3.010027 TCAAGCCATTTCATACTCCCACA 59.990 43.478 0.00 0.00 0.00 4.17
2532 3066 5.594926 CCCATTTCAAGCCATTTCATACTC 58.405 41.667 0.00 0.00 0.00 2.59
2544 3080 0.667184 CGTTGGTGCCCATTTCAAGC 60.667 55.000 0.00 0.00 31.53 4.01
2555 3091 1.734465 CTGATTCTTCCTCGTTGGTGC 59.266 52.381 0.00 0.00 37.07 5.01
2578 3114 5.367937 TCTCTCTTCTTGGGATTGATTAGGG 59.632 44.000 0.00 0.00 0.00 3.53
2579 3115 6.491714 TCTCTCTTCTTGGGATTGATTAGG 57.508 41.667 0.00 0.00 0.00 2.69
2581 3117 8.150827 TCTTTCTCTCTTCTTGGGATTGATTA 57.849 34.615 0.00 0.00 0.00 1.75
2599 3137 3.839051 AAAGCGCCATCTTTCTTTCTC 57.161 42.857 2.29 0.00 31.07 2.87
2627 3166 3.999001 GGCACAAAGTTACCAGTACTACC 59.001 47.826 0.00 0.00 0.00 3.18
2628 3167 4.689345 CAGGCACAAAGTTACCAGTACTAC 59.311 45.833 0.00 0.00 0.00 2.73
2629 3168 4.262721 CCAGGCACAAAGTTACCAGTACTA 60.263 45.833 0.00 0.00 0.00 1.82
2630 3169 3.496160 CCAGGCACAAAGTTACCAGTACT 60.496 47.826 0.00 0.00 0.00 2.73
2631 3170 2.812011 CCAGGCACAAAGTTACCAGTAC 59.188 50.000 0.00 0.00 0.00 2.73
2632 3171 2.706723 TCCAGGCACAAAGTTACCAGTA 59.293 45.455 0.00 0.00 0.00 2.74
2635 3174 2.738587 TTCCAGGCACAAAGTTACCA 57.261 45.000 0.00 0.00 0.00 3.25
2651 3194 2.517166 GCCCGGATCTGCCTTTCC 60.517 66.667 0.73 0.00 0.00 3.13
2665 3208 2.202783 GCGTGCAAATGGATGCCC 60.203 61.111 7.79 0.00 45.83 5.36
2668 3211 2.642139 AAGAAGCGTGCAAATGGATG 57.358 45.000 0.00 0.00 0.00 3.51
2669 3212 2.094545 GGAAAGAAGCGTGCAAATGGAT 60.095 45.455 0.00 0.00 0.00 3.41
2671 3214 1.669795 GGGAAAGAAGCGTGCAAATGG 60.670 52.381 0.00 0.00 0.00 3.16
2672 3215 1.669795 GGGGAAAGAAGCGTGCAAATG 60.670 52.381 0.00 0.00 0.00 2.32
2673 3216 0.603065 GGGGAAAGAAGCGTGCAAAT 59.397 50.000 0.00 0.00 0.00 2.32
2674 3217 1.791103 CGGGGAAAGAAGCGTGCAAA 61.791 55.000 0.00 0.00 0.00 3.68
2675 3218 2.258013 CGGGGAAAGAAGCGTGCAA 61.258 57.895 0.00 0.00 0.00 4.08
2676 3219 2.668212 CGGGGAAAGAAGCGTGCA 60.668 61.111 0.00 0.00 0.00 4.57
2677 3220 3.431725 CCGGGGAAAGAAGCGTGC 61.432 66.667 0.00 0.00 0.00 5.34
2678 3221 3.431725 GCCGGGGAAAGAAGCGTG 61.432 66.667 2.18 0.00 0.00 5.34
2704 3247 0.525668 GGTGACAGATCTACGCACCG 60.526 60.000 19.09 0.00 39.53 4.94
2800 3343 2.368655 ATGTACGTGGTAACCCGTTC 57.631 50.000 0.00 0.00 38.43 3.95
2809 3352 6.035217 GGTTTGTTTTGTTTATGTACGTGGT 58.965 36.000 0.00 0.00 0.00 4.16
2816 3359 4.033472 GCAAGCGGTTTGTTTTGTTTATGT 59.967 37.500 0.00 0.00 39.08 2.29
2817 3360 4.269844 AGCAAGCGGTTTGTTTTGTTTATG 59.730 37.500 0.00 0.00 39.08 1.90
2818 3361 4.438148 AGCAAGCGGTTTGTTTTGTTTAT 58.562 34.783 0.00 0.00 39.08 1.40
2819 3362 3.851098 AGCAAGCGGTTTGTTTTGTTTA 58.149 36.364 0.00 0.00 39.08 2.01
2820 3363 2.694213 AGCAAGCGGTTTGTTTTGTTT 58.306 38.095 0.00 0.00 39.08 2.83
2821 3364 2.378445 AGCAAGCGGTTTGTTTTGTT 57.622 40.000 0.00 0.00 39.08 2.83
2822 3365 2.378445 AAGCAAGCGGTTTGTTTTGT 57.622 40.000 0.00 0.00 36.94 2.83
2823 3366 3.000825 GGTAAAGCAAGCGGTTTGTTTTG 59.999 43.478 22.67 0.93 45.83 2.44
2825 3368 2.482316 GGGTAAAGCAAGCGGTTTGTTT 60.482 45.455 0.00 3.75 42.60 2.83
2826 3369 1.067974 GGGTAAAGCAAGCGGTTTGTT 59.932 47.619 0.00 0.00 42.60 2.83
2827 3370 0.671796 GGGTAAAGCAAGCGGTTTGT 59.328 50.000 0.00 0.00 42.60 2.83
2828 3371 0.038618 GGGGTAAAGCAAGCGGTTTG 60.039 55.000 0.00 0.00 42.60 2.93
2829 3372 0.178973 AGGGGTAAAGCAAGCGGTTT 60.179 50.000 0.00 0.00 44.68 3.27
2830 3373 0.694196 TAGGGGTAAAGCAAGCGGTT 59.306 50.000 0.00 0.00 0.00 4.44
2848 3401 2.231721 TCAATGGATCCACGTCGTGTTA 59.768 45.455 18.99 11.83 0.00 2.41
2868 3421 2.234143 GGAGCAAGCCCCAGATTAATC 58.766 52.381 7.41 7.41 0.00 1.75
2885 3438 4.358851 CAAGAGAGAATAGACAAGCGGAG 58.641 47.826 0.00 0.00 0.00 4.63
2894 3447 2.023015 TCCCAGGCCAAGAGAGAATAGA 60.023 50.000 5.01 0.00 0.00 1.98
2895 3448 2.368221 CTCCCAGGCCAAGAGAGAATAG 59.632 54.545 5.01 0.00 0.00 1.73
2896 3449 2.023015 TCTCCCAGGCCAAGAGAGAATA 60.023 50.000 5.01 0.00 32.92 1.75
2897 3450 1.211456 CTCCCAGGCCAAGAGAGAAT 58.789 55.000 5.01 0.00 0.00 2.40
2898 3451 0.117140 TCTCCCAGGCCAAGAGAGAA 59.883 55.000 5.01 0.00 32.92 2.87
2921 3479 3.822735 ACTACTGCTACTACGTTTCACCA 59.177 43.478 0.00 0.00 0.00 4.17
2955 3513 5.613360 CGTGATTGCGATCCATGATTTACTC 60.613 44.000 11.55 0.00 0.00 2.59
2987 3545 2.359354 CGGATGCCAAACGGGACA 60.359 61.111 0.00 0.00 40.01 4.02
2993 3551 2.438868 AAAAGCTTCGGATGCCAAAC 57.561 45.000 11.77 0.00 0.00 2.93
3003 3561 3.423645 CGAGAGCAAGGTTAAAAGCTTCG 60.424 47.826 0.00 2.08 44.21 3.79
3087 3645 2.162408 CGGAGAAAAGAATGGTTGAGGC 59.838 50.000 0.00 0.00 0.00 4.70
3119 3681 2.182030 GACTTGTCGCCGGGAGAG 59.818 66.667 2.18 2.94 0.00 3.20
3138 3700 2.110990 CACAGTGACACAAACAATGCG 58.889 47.619 8.59 0.00 36.93 4.73
3139 3701 2.853594 CACACAGTGACACAAACAATGC 59.146 45.455 7.81 0.00 36.93 3.56
3140 3702 4.095410 ACACACAGTGACACAAACAATG 57.905 40.909 7.81 0.00 38.90 2.82
3153 3715 0.250467 GCCTCCACATCACACACAGT 60.250 55.000 0.00 0.00 0.00 3.55
3154 3716 0.957395 GGCCTCCACATCACACACAG 60.957 60.000 0.00 0.00 0.00 3.66
3155 3717 1.073025 GGCCTCCACATCACACACA 59.927 57.895 0.00 0.00 0.00 3.72
3156 3718 0.613260 TAGGCCTCCACATCACACAC 59.387 55.000 9.68 0.00 0.00 3.82
3157 3719 0.613260 GTAGGCCTCCACATCACACA 59.387 55.000 9.68 0.00 0.00 3.72
3158 3720 0.460284 CGTAGGCCTCCACATCACAC 60.460 60.000 9.68 0.00 0.00 3.82
3159 3721 1.897423 CGTAGGCCTCCACATCACA 59.103 57.895 9.68 0.00 0.00 3.58
3160 3722 1.521681 GCGTAGGCCTCCACATCAC 60.522 63.158 9.68 0.00 0.00 3.06
3161 3723 1.685765 AGCGTAGGCCTCCACATCA 60.686 57.895 9.68 0.00 41.24 3.07
3162 3724 1.227380 CAGCGTAGGCCTCCACATC 60.227 63.158 9.68 0.00 41.24 3.06
3163 3725 2.735772 CCAGCGTAGGCCTCCACAT 61.736 63.158 9.68 0.00 41.24 3.21
3164 3726 2.791613 TACCAGCGTAGGCCTCCACA 62.792 60.000 9.68 0.00 41.24 4.17
3165 3727 2.056223 TACCAGCGTAGGCCTCCAC 61.056 63.158 9.68 0.68 41.24 4.02
3166 3728 2.056223 GTACCAGCGTAGGCCTCCA 61.056 63.158 9.68 0.00 41.24 3.86
3167 3729 2.813200 GTACCAGCGTAGGCCTCC 59.187 66.667 9.68 0.00 41.24 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.