Multiple sequence alignment - TraesCS5A01G271300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G271300 chr5A 100.000 2939 0 0 1 2939 481897362 481894424 0.000000e+00 5428
1 TraesCS5A01G271300 chr5B 91.698 2939 177 25 1 2923 457128809 457125922 0.000000e+00 4013
2 TraesCS5A01G271300 chr5D 94.462 1932 89 7 993 2923 381028997 381027083 0.000000e+00 2959
3 TraesCS5A01G271300 chr5D 89.974 379 15 13 556 924 381029393 381029028 4.440000e-128 468
4 TraesCS5A01G271300 chr5D 91.457 199 15 2 1 198 381029893 381029696 3.730000e-69 272
5 TraesCS5A01G271300 chr5D 90.000 210 16 2 335 539 381029665 381029456 1.740000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G271300 chr5A 481894424 481897362 2938 True 5428.0 5428 100.00000 1 2939 1 chr5A.!!$R1 2938
1 TraesCS5A01G271300 chr5B 457125922 457128809 2887 True 4013.0 4013 91.69800 1 2923 1 chr5B.!!$R1 2922
2 TraesCS5A01G271300 chr5D 381027083 381029893 2810 True 991.5 2959 91.47325 1 2923 4 chr5D.!!$R1 2922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 502 0.17668 CGAGACCCAGCTGCAGTAAT 59.823 55.0 16.64 0.0 0.0 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2248 2320 0.809385 CTTGGCTGAGCTCACCATTG 59.191 55.0 27.66 21.49 32.39 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 3.070015 CCAGGCAGAATTGGTTTTGTTCT 59.930 43.478 0.00 0.00 32.70 3.01
116 117 9.694137 TTCTGTTTCTCTTTTCTAGTAGCTTAC 57.306 33.333 0.00 0.00 0.00 2.34
119 120 8.088981 TGTTTCTCTTTTCTAGTAGCTTACAGG 58.911 37.037 0.00 0.00 0.00 4.00
193 194 4.030452 GCAGCCACTGTTGTCGCC 62.030 66.667 0.00 0.00 33.43 5.54
204 205 0.818040 GTTGTCGCCACCTTCCTTGT 60.818 55.000 0.00 0.00 0.00 3.16
223 224 5.391950 CCTTGTTCCATGTAAACATCCTTCG 60.392 44.000 10.63 0.00 36.57 3.79
224 225 4.900684 TGTTCCATGTAAACATCCTTCGA 58.099 39.130 6.77 0.00 33.61 3.71
237 238 1.623311 TCCTTCGAAACTGCTCATGGA 59.377 47.619 0.00 0.00 0.00 3.41
244 245 5.060506 TCGAAACTGCTCATGGACTTTTAA 58.939 37.500 0.00 0.00 0.00 1.52
251 252 6.204882 ACTGCTCATGGACTTTTAAACACTAC 59.795 38.462 0.00 0.00 0.00 2.73
255 256 3.742385 TGGACTTTTAAACACTACCGGG 58.258 45.455 6.32 0.00 0.00 5.73
257 258 3.748048 GGACTTTTAAACACTACCGGGTC 59.252 47.826 6.32 0.00 0.00 4.46
258 259 3.392882 ACTTTTAAACACTACCGGGTCG 58.607 45.455 6.32 0.00 0.00 4.79
267 268 1.589716 CTACCGGGTCGACGAGGTTT 61.590 60.000 29.78 14.73 38.12 3.27
274 275 0.653636 GTCGACGAGGTTTTGTTGCA 59.346 50.000 0.00 0.00 0.00 4.08
278 279 2.529894 CGACGAGGTTTTGTTGCAAAAG 59.470 45.455 0.00 0.01 0.00 2.27
288 289 1.474478 TGTTGCAAAAGGAAACTCGCA 59.526 42.857 0.00 0.00 42.68 5.10
291 292 1.680735 TGCAAAAGGAAACTCGCATGT 59.319 42.857 0.00 0.00 42.68 3.21
315 316 5.065988 TCGATCAATGTCTCAGTGTCGAATA 59.934 40.000 15.69 2.72 38.17 1.75
318 319 5.402398 TCAATGTCTCAGTGTCGAATACTG 58.598 41.667 19.69 19.69 45.30 2.74
325 326 4.986622 TCAGTGTCGAATACTGTGATGAG 58.013 43.478 22.88 4.32 44.49 2.90
335 336 5.803237 ATACTGTGATGAGCTGATGATGA 57.197 39.130 0.00 0.00 0.00 2.92
348 349 4.270084 GCTGATGATGATGCACAAATTTGG 59.730 41.667 21.74 11.81 0.00 3.28
410 411 4.470446 CGATGTCGTCGTGCATATATTC 57.530 45.455 6.28 0.00 45.19 1.75
501 502 0.176680 CGAGACCCAGCTGCAGTAAT 59.823 55.000 16.64 0.00 0.00 1.89
503 504 0.176680 AGACCCAGCTGCAGTAATCG 59.823 55.000 16.64 2.06 0.00 3.34
554 606 2.036089 GAGGACGTTCACTCAAAGACCT 59.964 50.000 0.00 0.00 40.33 3.85
600 657 2.265739 GCTGGACAGTGATGCCGA 59.734 61.111 0.00 0.00 0.00 5.54
693 750 6.538742 ACCATGTGTATCATTGTAGCAACTAC 59.461 38.462 0.00 0.00 34.74 2.73
694 751 6.292328 CCATGTGTATCATTGTAGCAACTACG 60.292 42.308 0.69 0.00 35.87 3.51
695 752 4.565166 TGTGTATCATTGTAGCAACTACGC 59.435 41.667 0.69 0.00 39.58 4.42
696 753 4.565166 GTGTATCATTGTAGCAACTACGCA 59.435 41.667 0.69 0.00 39.58 5.24
697 754 4.803613 TGTATCATTGTAGCAACTACGCAG 59.196 41.667 0.69 0.00 39.58 5.18
718 775 5.616866 GCAGTACGCACTATTGAACAATGTT 60.617 40.000 0.00 0.00 41.79 2.71
738 795 7.856145 ATGTTTAACAGCAAGAGGAATAGAG 57.144 36.000 3.63 0.00 0.00 2.43
740 797 7.224297 TGTTTAACAGCAAGAGGAATAGAGTT 58.776 34.615 0.00 0.00 0.00 3.01
753 810 6.118852 AGGAATAGAGTTCAGAAAGATTGGC 58.881 40.000 0.00 0.00 0.00 4.52
784 841 4.159321 TGTTGAATTCACAGTGCTGGAAAA 59.841 37.500 7.89 0.00 34.19 2.29
849 913 4.385244 ACTGTATTTTCTTCGACGTTGC 57.615 40.909 0.00 0.00 0.00 4.17
855 919 2.163818 TTCTTCGACGTTGCCTGAAT 57.836 45.000 0.00 0.00 0.00 2.57
871 942 3.557595 CCTGAATTATTCTGACGGTCAGC 59.442 47.826 28.92 15.72 43.95 4.26
872 943 4.183865 CTGAATTATTCTGACGGTCAGCA 58.816 43.478 28.92 21.37 43.95 4.41
903 975 4.454678 TGCAATTCTGAACTCTGAACTGT 58.545 39.130 8.80 0.00 34.83 3.55
924 996 7.146648 ACTGTACTACTAGCAAAAGACAGTTC 58.853 38.462 8.94 0.00 42.63 3.01
932 1004 2.223249 GCAAAAGACAGTTCGAAGTGCA 60.223 45.455 28.64 0.00 32.54 4.57
944 1016 2.292569 TCGAAGTGCACGTAAGAAGAGT 59.707 45.455 12.01 0.00 43.62 3.24
948 1020 2.059541 GTGCACGTAAGAAGAGTCACC 58.940 52.381 0.00 0.00 43.62 4.02
1065 1137 2.910479 ACGACGCCTCAGACCACA 60.910 61.111 0.00 0.00 0.00 4.17
1073 1145 4.631740 TCAGACCACAGGCGGGGA 62.632 66.667 4.65 0.00 0.00 4.81
1152 1224 3.043999 GCTCCCCGTGCCTACCATT 62.044 63.158 0.00 0.00 0.00 3.16
1383 1455 4.394712 CTGGACGGCGCCTTCCTT 62.395 66.667 41.37 16.11 35.64 3.36
1686 1758 3.050275 GTGTTCACCAGCTCGGCC 61.050 66.667 0.00 0.00 39.03 6.13
1824 1896 1.522580 GAGGCTCGGCATTGAGGTC 60.523 63.158 0.00 0.00 36.47 3.85
1939 2011 4.218417 GGTTTAGTGCTGGTTCACATTGAT 59.782 41.667 0.00 0.00 39.35 2.57
1941 2013 6.095440 GGTTTAGTGCTGGTTCACATTGATAT 59.905 38.462 0.00 0.00 39.35 1.63
1942 2014 6.682423 TTAGTGCTGGTTCACATTGATATG 57.318 37.500 0.00 0.00 39.35 1.78
1943 2015 4.847198 AGTGCTGGTTCACATTGATATGA 58.153 39.130 0.00 0.00 39.35 2.15
1944 2016 5.443283 AGTGCTGGTTCACATTGATATGAT 58.557 37.500 0.00 0.00 39.35 2.45
1945 2017 6.594744 AGTGCTGGTTCACATTGATATGATA 58.405 36.000 0.00 0.00 39.35 2.15
1946 2018 6.709397 AGTGCTGGTTCACATTGATATGATAG 59.291 38.462 0.00 0.00 39.35 2.08
1947 2019 5.999600 TGCTGGTTCACATTGATATGATAGG 59.000 40.000 0.00 0.00 35.65 2.57
1948 2020 5.106396 GCTGGTTCACATTGATATGATAGGC 60.106 44.000 0.00 0.00 35.65 3.93
1949 2021 4.996758 TGGTTCACATTGATATGATAGGCG 59.003 41.667 0.00 0.00 35.65 5.52
1950 2022 5.221621 TGGTTCACATTGATATGATAGGCGA 60.222 40.000 0.00 0.00 35.65 5.54
1951 2023 5.700832 GGTTCACATTGATATGATAGGCGAA 59.299 40.000 0.00 0.00 35.65 4.70
1952 2024 6.372659 GGTTCACATTGATATGATAGGCGAAT 59.627 38.462 0.00 0.00 35.65 3.34
1987 2059 6.737254 AACTTTCTTTCTTCGAGTCACAAA 57.263 33.333 0.00 0.00 0.00 2.83
1990 2062 7.189512 ACTTTCTTTCTTCGAGTCACAAATTG 58.810 34.615 0.00 0.00 0.00 2.32
2069 2141 4.896482 ACCAACCTGTCACCTAGATATCTC 59.104 45.833 8.95 0.00 0.00 2.75
2110 2182 3.640967 TGCATTCTACCAACCAAGCTTTT 59.359 39.130 0.00 0.00 0.00 2.27
2127 2199 7.328493 CCAAGCTTTTTACCTGTTAATAACTGC 59.672 37.037 0.00 0.00 0.00 4.40
2135 2207 4.870426 ACCTGTTAATAACTGCGATCACAG 59.130 41.667 9.21 9.21 43.59 3.66
2146 2218 1.382522 CGATCACAGAAATGGGGTGG 58.617 55.000 0.00 0.00 33.45 4.61
2177 2249 6.783708 TTCTTGATCTTCCTCCTCTAGAAC 57.216 41.667 0.00 0.00 29.81 3.01
2182 2254 3.354467 TCTTCCTCCTCTAGAACGTTCC 58.646 50.000 24.22 7.13 0.00 3.62
2215 2287 6.238842 GCTTATATGAGAAGCTGGATTTGCAA 60.239 38.462 0.00 0.00 44.83 4.08
2248 2320 1.340248 TCACCACTTCCAGTTCGAGAC 59.660 52.381 0.00 0.00 0.00 3.36
2262 2334 1.203287 TCGAGACAATGGTGAGCTCAG 59.797 52.381 18.89 7.58 32.73 3.35
2366 2438 4.256983 TGTGATAGGGACAGTCAGAGAT 57.743 45.455 2.17 0.00 0.00 2.75
2374 2446 3.571590 GGACAGTCAGAGATCCAGGTAT 58.428 50.000 2.17 0.00 0.00 2.73
2381 2454 5.365314 AGTCAGAGATCCAGGTATTCCTTTC 59.635 44.000 0.00 0.00 43.07 2.62
2388 2461 5.552870 TCCAGGTATTCCTTTCTAGCATC 57.447 43.478 0.00 0.00 43.07 3.91
2405 2478 5.579753 AGCATCCCTCTTGATGACATTAT 57.420 39.130 5.26 0.00 43.94 1.28
2616 2689 2.165167 CACATTGCATCACCTGTCCTT 58.835 47.619 0.00 0.00 0.00 3.36
2619 2692 0.770499 TTGCATCACCTGTCCTTGGA 59.230 50.000 0.00 0.00 0.00 3.53
2628 2701 4.043310 TCACCTGTCCTTGGAAAATCTGAT 59.957 41.667 0.00 0.00 0.00 2.90
2661 2734 1.801771 GCATGCTGCATTTGCTTCAAA 59.198 42.857 18.29 0.00 44.26 2.69
2663 2736 1.868469 TGCTGCATTTGCTTCAAACC 58.132 45.000 0.00 0.00 42.66 3.27
2667 2740 2.036217 CTGCATTTGCTTCAAACCCTCA 59.964 45.455 3.94 0.00 42.66 3.86
2677 2751 8.593945 TTGCTTCAAACCCTCAATCTATTATT 57.406 30.769 0.00 0.00 0.00 1.40
2709 2783 7.822161 TGCCATGTACTTGAATATGCTATTT 57.178 32.000 10.20 0.00 0.00 1.40
2757 2831 6.549736 GTCCTGCAATTAATGGTACCCTAAAT 59.450 38.462 10.07 3.20 0.00 1.40
2923 2997 6.812160 CGAAAAGCTACAGGTAATACAGAACT 59.188 38.462 0.00 0.00 0.00 3.01
2924 2998 7.201444 CGAAAAGCTACAGGTAATACAGAACTG 60.201 40.741 0.00 0.00 35.40 3.16
2925 2999 6.607004 AAGCTACAGGTAATACAGAACTGT 57.393 37.500 12.10 12.10 46.87 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 8.088981 CCTGTAAGCTACTAGAAAAGAGAAACA 58.911 37.037 0.00 0.00 0.00 2.83
142 143 6.210185 AGCATATTCAAAAGGCTGAAAGTTCT 59.790 34.615 0.00 0.00 38.75 3.01
204 205 6.001460 AGTTTCGAAGGATGTTTACATGGAA 58.999 36.000 0.00 0.00 36.57 3.53
223 224 6.417930 GTGTTTAAAAGTCCATGAGCAGTTTC 59.582 38.462 0.00 0.00 0.00 2.78
224 225 6.096846 AGTGTTTAAAAGTCCATGAGCAGTTT 59.903 34.615 0.00 0.00 0.00 2.66
237 238 3.069443 TCGACCCGGTAGTGTTTAAAAGT 59.931 43.478 0.00 0.00 0.00 2.66
244 245 1.580845 CTCGTCGACCCGGTAGTGTT 61.581 60.000 10.58 0.00 0.00 3.32
251 252 2.025418 CAAAACCTCGTCGACCCGG 61.025 63.158 10.58 12.83 0.00 5.73
255 256 0.653636 TGCAACAAAACCTCGTCGAC 59.346 50.000 5.18 5.18 0.00 4.20
257 258 2.181426 TTTGCAACAAAACCTCGTCG 57.819 45.000 0.00 0.00 0.00 5.12
258 259 2.857748 CCTTTTGCAACAAAACCTCGTC 59.142 45.455 0.00 0.00 0.00 4.20
267 268 2.094494 TGCGAGTTTCCTTTTGCAACAA 60.094 40.909 0.00 0.00 0.00 2.83
274 275 2.489971 TCGACATGCGAGTTTCCTTTT 58.510 42.857 7.93 0.00 45.59 2.27
288 289 4.428209 GACACTGAGACATTGATCGACAT 58.572 43.478 0.00 0.00 0.00 3.06
291 292 2.747446 TCGACACTGAGACATTGATCGA 59.253 45.455 0.00 0.00 35.18 3.59
315 316 4.381411 CATCATCATCAGCTCATCACAGT 58.619 43.478 0.00 0.00 0.00 3.55
318 319 3.058846 GTGCATCATCATCAGCTCATCAC 60.059 47.826 0.00 0.00 0.00 3.06
325 326 4.270084 CCAAATTTGTGCATCATCATCAGC 59.730 41.667 16.73 0.00 0.00 4.26
335 336 3.770933 AGGTCTATGCCAAATTTGTGCAT 59.229 39.130 31.54 31.54 42.99 3.96
348 349 2.223758 GGACGGTCAAGTAGGTCTATGC 60.224 54.545 10.76 0.00 0.00 3.14
503 504 1.718757 AATGCCAAGATTCGAGCGGC 61.719 55.000 0.00 0.00 43.28 6.53
554 606 5.124617 CGACCAAGCTATCTATCTATCTGCA 59.875 44.000 0.00 0.00 0.00 4.41
600 657 5.650266 CACATACTTCAGGAGAGTAGTCACT 59.350 44.000 0.00 0.00 37.87 3.41
694 751 4.142902 ACATTGTTCAATAGTGCGTACTGC 60.143 41.667 17.04 3.22 46.70 4.40
695 752 5.530519 ACATTGTTCAATAGTGCGTACTG 57.469 39.130 17.04 0.34 37.78 2.74
696 753 6.554334 AAACATTGTTCAATAGTGCGTACT 57.446 33.333 11.87 11.87 40.99 2.73
697 754 7.799447 TGTTAAACATTGTTCAATAGTGCGTAC 59.201 33.333 1.83 0.00 0.00 3.67
698 755 7.862648 TGTTAAACATTGTTCAATAGTGCGTA 58.137 30.769 1.83 0.00 0.00 4.42
718 775 7.004555 TGAACTCTATTCCTCTTGCTGTTAA 57.995 36.000 0.00 0.00 0.00 2.01
738 795 3.596214 TCTACCGCCAATCTTTCTGAAC 58.404 45.455 0.00 0.00 0.00 3.18
740 797 4.191544 CAATCTACCGCCAATCTTTCTGA 58.808 43.478 0.00 0.00 0.00 3.27
753 810 5.621422 CACTGTGAATTCAACAATCTACCG 58.379 41.667 10.35 0.78 0.00 4.02
784 841 5.537674 AGCAGACAAGATCAAAACTGGAAAT 59.462 36.000 0.00 0.00 0.00 2.17
789 846 4.781071 GTCAGCAGACAAGATCAAAACTG 58.219 43.478 4.10 0.74 44.34 3.16
815 878 6.407202 AGAAAATACAGTAGGCTGGTAAGTG 58.593 40.000 0.00 0.00 46.62 3.16
817 880 6.255887 CGAAGAAAATACAGTAGGCTGGTAAG 59.744 42.308 0.00 0.00 46.62 2.34
872 943 4.558538 GTTCAGAATTGCAGTGAACACT 57.441 40.909 19.98 1.32 46.18 3.55
883 954 8.085296 AGTAGTACAGTTCAGAGTTCAGAATTG 58.915 37.037 2.52 7.79 35.98 2.32
884 955 8.184304 AGTAGTACAGTTCAGAGTTCAGAATT 57.816 34.615 2.52 0.00 0.00 2.17
903 975 6.564709 TCGAACTGTCTTTTGCTAGTAGTA 57.435 37.500 0.00 0.00 0.00 1.82
924 996 2.657372 GACTCTTCTTACGTGCACTTCG 59.343 50.000 16.19 4.23 0.00 3.79
932 1004 1.811359 CTCCGGTGACTCTTCTTACGT 59.189 52.381 0.00 0.00 0.00 3.57
944 1016 3.138468 TCTGAAGGATATCTCTCCGGTGA 59.862 47.826 6.00 6.00 40.46 4.02
948 1020 5.709631 TCTGAATCTGAAGGATATCTCTCCG 59.290 44.000 2.05 0.00 40.46 4.63
1073 1145 3.534056 CGTATCCTTCCCCGCCGT 61.534 66.667 0.00 0.00 0.00 5.68
1146 1218 2.899838 GCGCGGATGGCAATGGTA 60.900 61.111 8.83 0.00 43.84 3.25
1317 1389 4.821589 GTGAAGGGGAGCGCGGAG 62.822 72.222 8.83 0.00 0.00 4.63
1692 1764 4.120755 CCCTTGAGCAGCCCCTCC 62.121 72.222 0.00 0.00 0.00 4.30
1752 1824 4.082523 ACGACCATGTCCGGCCAG 62.083 66.667 2.24 0.00 0.00 4.85
1824 1896 2.276120 CTCGAGCTCACGACGTCG 60.276 66.667 34.58 34.58 46.33 5.12
1890 1962 9.565213 CTGGAGCTAATTTTAAATTGTTGAGAG 57.435 33.333 12.62 2.85 0.00 3.20
1902 1974 6.374333 CAGCACTAAACCTGGAGCTAATTTTA 59.626 38.462 0.00 0.00 0.00 1.52
1987 2059 3.657398 TCATTCCATCAGGCTGACAAT 57.343 42.857 21.37 14.90 33.74 2.71
1990 2062 2.715046 TGTTCATTCCATCAGGCTGAC 58.285 47.619 21.37 4.73 33.74 3.51
2069 2141 6.932356 ATGCAGATTTACAGTACATTCTGG 57.068 37.500 12.39 0.00 39.48 3.86
2110 2182 6.399743 TGTGATCGCAGTTATTAACAGGTAA 58.600 36.000 4.45 0.00 0.00 2.85
2127 2199 1.340017 ACCACCCCATTTCTGTGATCG 60.340 52.381 0.00 0.00 31.66 3.69
2135 2207 3.448469 TGGTTCACCACCCCATTTC 57.552 52.632 0.00 0.00 46.68 2.17
2146 2218 4.637977 GGAGGAAGATCAAGAATGGTTCAC 59.362 45.833 0.00 0.00 0.00 3.18
2163 2235 3.453059 AGGAACGTTCTAGAGGAGGAA 57.547 47.619 26.32 0.00 0.00 3.36
2182 2254 5.321983 GCTTCTCATATAAGCACGTCAAG 57.678 43.478 4.19 0.00 46.85 3.02
2215 2287 3.498774 AGTGGTGAAGCTGAGATTTGT 57.501 42.857 0.00 0.00 0.00 2.83
2248 2320 0.809385 CTTGGCTGAGCTCACCATTG 59.191 55.000 27.66 21.49 32.39 2.82
2321 2393 6.214191 TGATATCCACACTCAAGAAGTCTC 57.786 41.667 0.00 0.00 35.45 3.36
2374 2446 4.104086 TCAAGAGGGATGCTAGAAAGGAA 58.896 43.478 0.00 0.00 0.00 3.36
2381 2454 4.620589 ATGTCATCAAGAGGGATGCTAG 57.379 45.455 0.00 0.00 43.44 3.42
2388 2461 7.969536 ACGATAAATAATGTCATCAAGAGGG 57.030 36.000 0.00 0.00 0.00 4.30
2405 2478 4.760878 TGCTTGCAGGTATGTACGATAAA 58.239 39.130 0.00 0.00 0.00 1.40
2418 2491 3.194116 ACCATAGTTCATTTGCTTGCAGG 59.806 43.478 0.00 0.00 0.00 4.85
2619 2692 4.939439 GCCTTGCAATTGGAATCAGATTTT 59.061 37.500 13.13 0.00 0.00 1.82
2661 2734 9.686683 GCATGGTAATAATAATAGATTGAGGGT 57.313 33.333 0.00 0.00 0.00 4.34
2663 2736 9.685276 TGGCATGGTAATAATAATAGATTGAGG 57.315 33.333 0.00 0.00 0.00 3.86
2677 2751 9.230122 CATATTCAAGTACATGGCATGGTAATA 57.770 33.333 29.49 20.43 33.60 0.98
2715 2789 1.680338 GACCAAGTGTTGCTTCCTGT 58.320 50.000 0.00 0.00 34.69 4.00
2757 2831 0.391228 TCTTGCACGACCTTAGCACA 59.609 50.000 0.00 0.00 38.11 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.